@cornerstonejs/tools 0.17.4 → 0.18.0

package/dist/cjs/utilities/segmentation/thresholdVolumeByRange.d.ts

@@ -1,24 +1,10 @@
 import type { Types } from '@cornerstonejs/core';
-import { ToolGroupSpecificRepresentation } from '../../types/SegmentationStateTypes';
+import { BoundsIJK } from '../../types';
 export declare type ThresholdRangeOptions = {
-    higherThreshold: number;
-    lowerThreshold: number;
-    numSlicesToProject?: number;
+    upper: number;
+    lower: number;
+    boundsIJK: BoundsIJK;
     overwrite: boolean;
 };
-export declare type AnnotationForThresholding = {
-    metadata: {
-        enabledElement: Types.IEnabledElement;
-    };
-    data: {
-        handles: {
-            points: Types.Point3[];
-        };
-        cachedStats?: {
-            projectionPoints?: Types.Point3[][];
-        };
-    };
-};
-declare function thresholdVolumeByRange(annotations: AnnotationForThresholding[], referenceVolumes: Types.IImageVolume[], segmentationRepresentation: ToolGroupSpecificRepresentation, options: ThresholdRangeOptions): Types.IImageVolume;
-export declare function extendBoundingBoxInSliceAxisIfNecessary(boundsIJK: [Types.Point2, Types.Point2, Types.Point2], numSlicesToProject: number): [Types.Point2, Types.Point2, Types.Point2];
+declare function thresholdVolumeByRange(segmentationVolume: Types.IImageVolume, referenceVolume: Types.IImageVolume, options: ThresholdRangeOptions): Types.IImageVolume;
 export default thresholdVolumeByRange;

package/dist/cjs/utilities/segmentation/thresholdVolumeByRange.js

@@ -1,84 +1,28 @@
 "use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    Object.defineProperty(o, k2, { enumerable: true, get: function() { return m[k]; } });
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.extendBoundingBoxInSliceAxisIfNecessary = void 0;
-const core_1 = require("@cornerstonejs/core");
-const segmentation_1 = require("../segmentation");
 const utilities_1 = require("../../utilities");
 const triggerSegmentationEvents_1 = require("../../stateManagement/segmentation/triggerSegmentationEvents");
-const SegmentationState = __importStar(require("../../stateManagement/segmentation/segmentationState"));
-const { transformWorldToIndex } = core_1.utilities;
-function thresholdVolumeByRange(annotations, referenceVolumes, segmentationRepresentation, options) {
-    if (referenceVolumes.length > 1) {
-        throw new Error('thresholding more than one volumes is not supported yet');
-    }
-    const segmentation = SegmentationState.getSegmentation(segmentationRepresentation.segmentationId);
-    const { segmentationId } = segmentationRepresentation;
-    if (!segmentation) {
-        throw new Error('No Segmentation Found');
-    }
-    const { type, representationData } = segmentation;
-    const { volumeId } = representationData[type];
-    const segmentationVolume = core_1.cache.getVolume(volumeId);
+function thresholdVolumeByRange(segmentationVolume, referenceVolume, options) {
     const { scalarData, imageData: segmentationImageData } = segmentationVolume;
-    const { lowerThreshold, higherThreshold, numSlicesToProject, overwrite } = options;
+    const { overwrite, boundsIJK, upper, lower } = options;
+    const { imageData } = referenceVolume;
+    const referenceValues = imageData.getPointData().getScalars().getData();
     if (overwrite) {
         for (let i = 0; i < scalarData.length; i++) {
             scalarData[i] = 0;
         }
     }
-    annotations.forEach((annotation) => {
-        var _a, _b;
-        const { data } = annotation;
-        const { points } = data.handles;
-        const referenceVolume = referenceVolumes[0];
-        const { imageData, dimensions } = referenceVolume;
-        const values = imageData.getPointData().getScalars().getData();
-        let pointsToUse = points;
-        if ((_a = data.cachedStats) === null || _a === void 0 ? void 0 : _a.projectionPoints) {
-            const { projectionPoints } = data.cachedStats;
-            pointsToUse = [].concat(...projectionPoints);
+    const callback = ({ index, pointIJK }) => {
+        const offset = imageData.computeOffsetIndex(pointIJK);
+        const value = referenceValues[offset];
+        if (value <= lower || value >= upper) {
+            return;
         }
-        const rectangleCornersIJK = pointsToUse.map((world) => transformWorldToIndex(imageData, world));
-        let boundsIJK = (0, segmentation_1.getBoundingBoxAroundShape)(rectangleCornersIJK, dimensions);
-        if (numSlicesToProject && !((_b = data.cachedStats) === null || _b === void 0 ? void 0 : _b.projectionPoints)) {
-            boundsIJK = extendBoundingBoxInSliceAxisIfNecessary(boundsIJK, numSlicesToProject);
-        }
-        const callback = ({ index, pointIJK }) => {
-            const offset = imageData.computeOffsetIndex(pointIJK);
-            const value = values[offset];
-            if (value <= lowerThreshold || value >= higherThreshold) {
-                return;
-            }
-            scalarData[index] = 1;
-        };
-        (0, utilities_1.pointInShapeCallback)(segmentationImageData, () => true, callback, boundsIJK);
-    });
-    (0, triggerSegmentationEvents_1.triggerSegmentationDataModified)(segmentationId);
+        scalarData[index] = 1;
+    };
+    (0, utilities_1.pointInShapeCallback)(segmentationImageData, () => true, callback, boundsIJK);
+    (0, triggerSegmentationEvents_1.triggerSegmentationDataModified)(segmentationVolume.volumeId);
     return segmentationVolume;
 }
-function extendBoundingBoxInSliceAxisIfNecessary(boundsIJK, numSlicesToProject) {
-    const extendedBoundsIJK = (0, segmentation_1.extend2DBoundingBoxInViewAxis)(boundsIJK, numSlicesToProject);
-    return extendedBoundsIJK;
-}
-exports.extendBoundingBoxInSliceAxisIfNecessary = extendBoundingBoxInSliceAxisIfNecessary;
 exports.default = thresholdVolumeByRange;
 //# sourceMappingURL=thresholdVolumeByRange.js.map

package/dist/cjs/utilities/segmentation/thresholdVolumeByRange.js.map

@@ -1 +1 @@
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package/dist/esm/enums/Events.d.ts

@@ -10,6 +10,7 @@ declare enum Events {
     SEGMENTATION_MODIFIED = "CORNERSTONE_TOOLS_SEGMENTATION_MODIFIED",
     SEGMENTATION_RENDERED = "CORNERSTONE_TOOLS_SEGMENTATION_RENDERED",
     SEGMENTATION_REPRESENTATION_MODIFIED = "CORNERSTONE_TOOLS_SEGMENTATION_REPRESENTATION_MODIFIED",
+    SEGMENTATION_REMOVED = "CORNERSTONE_TOOLS_SEGMENTATION_REMOVED",
     SEGMENTATION_REPRESENTATION_REMOVED = "CORNERSTONE_TOOLS_SEGMENTATION_REPRESENTATION_REMOVED",
     SEGMENTATION_DATA_MODIFIED = "CORNERSTONE_TOOLS_SEGMENTATION_DATA_MODIFIED",
     KEY_DOWN = "CORNERSTONE_TOOLS_KEY_DOWN",

package/dist/esm/enums/Events.js

@@ -11,6 +11,7 @@ var Events;
     Events["SEGMENTATION_MODIFIED"] = "CORNERSTONE_TOOLS_SEGMENTATION_MODIFIED";
     Events["SEGMENTATION_RENDERED"] = "CORNERSTONE_TOOLS_SEGMENTATION_RENDERED";
     Events["SEGMENTATION_REPRESENTATION_MODIFIED"] = "CORNERSTONE_TOOLS_SEGMENTATION_REPRESENTATION_MODIFIED";
+    Events["SEGMENTATION_REMOVED"] = "CORNERSTONE_TOOLS_SEGMENTATION_REMOVED";
     Events["SEGMENTATION_REPRESENTATION_REMOVED"] = "CORNERSTONE_TOOLS_SEGMENTATION_REPRESENTATION_REMOVED";
     Events["SEGMENTATION_DATA_MODIFIED"] = "CORNERSTONE_TOOLS_SEGMENTATION_DATA_MODIFIED";
     Events["KEY_DOWN"] = "CORNERSTONE_TOOLS_KEY_DOWN";

package/dist/esm/enums/Events.js.map

@@ -1 +1 @@
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package/dist/esm/eventListeners/segmentation/segmentationRepresentationRemovedEventListener.js.map

@@ -1 +1 @@
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package/dist/esm/stateManagement/segmentation/SegmentationStateManager.d.ts

@@ -14,6 +14,7 @@ export default class SegmentationStateManager {
     getGlobalConfig(): SegmentationRepresentationConfig;
     setGlobalConfig(config: SegmentationRepresentationConfig): void;
     getSegmentationRepresentationByUID(toolGroupId: string, segmentationRepresentationUID: string): ToolGroupSpecificRepresentation | undefined;
+    removeSegmentation(segmentationId: string): void;
     removeSegmentationRepresentation(toolGroupId: string, segmentationRepresentationUID: string): void;
     setActiveSegmentationRepresentation(toolGroupId: string, segmentationRepresentationUID: string): void;
     getToolGroupSpecificConfig(toolGroupId: string): SegmentationRepresentationConfig | undefined;

package/dist/esm/stateManagement/segmentation/SegmentationStateManager.js

@@ -69,6 +69,9 @@ export default class SegmentationStateManager {
             segmentationRepresentationUID);
         return segmentationData;
     }
+    removeSegmentation(segmentationId) {
+        this.state.segmentations = this.state.segmentations.filter((segmentation) => segmentation.segmentationId !== segmentationId);
+    }
     removeSegmentationRepresentation(toolGroupId, segmentationRepresentationUID) {
         const toolGroupSegmentationRepresentations = this.getSegmentationRepresentations(toolGroupId);
         if (!toolGroupSegmentationRepresentations ||

package/dist/esm/stateManagement/segmentation/SegmentationStateManager.js.map

@@ -1 +1 @@
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package/dist/esm/stateManagement/segmentation/helpers/normalizeSegmentationInput.js

@@ -3,7 +3,7 @@ function normalizeSegmentationInput(segmentationInput) {
     return {
         segmentationId,
         cachedStats: {},
-        label: segmentationId,
+        label: null,
         segmentsLocked: new Set(),
         type: representation.type,
         activeSegmentIndex: 1,

package/dist/esm/stateManagement/segmentation/helpers/normalizeSegmentationInput.js.map

@@ -1 +1 @@
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+{"version":3,"file":"normalizeSegmentationInput.js","sourceRoot":"","sources":["../../../../../src/stateManagement/segmentation/helpers/normalizeSegmentationInput.ts"],"names":[],"mappings":"AAWA,SAAS,0BAA0B,CACjC,iBAA0C;IAE1C,MAAM,EAAE,cAAc,EAAE,cAAc,EAAE,GAAG,iBAAiB,CAAC;IAI7D,OAAO;QACL,cAAc;QACd,WAAW,EAAE,EAAE;QACf,KAAK,EAAE,IAAI;QACX,cAAc,EAAE,IAAI,GAAG,EAAE;QACzB,IAAI,EAAE,cAAc,CAAC,IAAI;QACzB,kBAAkB,EAAE,CAAC;QACrB,kBAAkB,EAAE;YAClB,CAAC,cAAc,CAAC,IAAI,CAAC,EAAE;gBACrB,GAAG,cAAc,CAAC,IAAI;aACvB;SACF;KACF,CAAC;AACJ,CAAC;AAED,eAAe,0BAA0B,CAAC"}

package/dist/esm/stateManagement/segmentation/segmentationState.d.ts

@@ -11,7 +11,8 @@ declare function addSegmentationRepresentation(toolGroupId: string, segmentation
 declare function getGlobalConfig(): SegmentationRepresentationConfig;
 declare function setGlobalConfig(config: SegmentationRepresentationConfig, suppressEvents?: boolean): void;
 declare function getSegmentationRepresentationByUID(toolGroupId: string, segmentationRepresentationUID: string): ToolGroupSpecificRepresentation | undefined;
+declare function removeSegmentation(segmentationId: string): void;
 declare function removeSegmentationRepresentation(toolGroupId: string, segmentationRepresentationUID: string): void;
 declare function getColorLUT(index: number): ColorLUT | undefined;
 declare function addColorLUT(colorLUT: ColorLUT, index: number): void;
-export { getDefaultSegmentationStateManager, getSegmentation, getSegmentations, addSegmentation, getSegmentationRepresentations, addSegmentationRepresentation, removeSegmentationRepresentation, getToolGroupSpecificConfig, setToolGroupSpecificConfig, getGlobalConfig, setGlobalConfig, getToolGroupsWithSegmentation, getSegmentationRepresentationByUID, addColorLUT, getColorLUT, };
+export { getDefaultSegmentationStateManager, getSegmentation, getSegmentations, addSegmentation, removeSegmentation, getSegmentationRepresentations, addSegmentationRepresentation, removeSegmentationRepresentation, getToolGroupSpecificConfig, setToolGroupSpecificConfig, getGlobalConfig, setGlobalConfig, getToolGroupsWithSegmentation, getSegmentationRepresentationByUID, addColorLUT, getColorLUT, };

package/dist/esm/stateManagement/segmentation/segmentationState.js

@@ -1,5 +1,5 @@
 import { defaultSegmentationStateManager } from './SegmentationStateManager';
-import { triggerSegmentationRepresentationModified, triggerSegmentationModified, triggerSegmentationRepresentationRemoved, } from './triggerSegmentationEvents';
+import { triggerSegmentationRepresentationModified, triggerSegmentationModified, triggerSegmentationRepresentationRemoved, triggerSegmentationRemoved, } from './triggerSegmentationEvents';
 import { getDefaultRepresentationConfig } from '../../utilities/segmentation';
 import normalizeSegmentationInput from './helpers/normalizeSegmentationInput';
 function getDefaultSegmentationStateManager() {
@@ -75,6 +75,11 @@ function getSegmentationRepresentationByUID(toolGroupId, segmentationRepresentat
     const segmentationStateManager = getDefaultSegmentationStateManager();
     return segmentationStateManager.getSegmentationRepresentationByUID(toolGroupId, segmentationRepresentationUID);
 }
+function removeSegmentation(segmentationId) {
+    const segmentationStateManager = getDefaultSegmentationStateManager();
+    segmentationStateManager.removeSegmentation(segmentationId);
+    triggerSegmentationRemoved(segmentationId);
+}
 function removeSegmentationRepresentation(toolGroupId, segmentationRepresentationUID) {
     const segmentationStateManager = getDefaultSegmentationStateManager();
     segmentationStateManager.removeSegmentationRepresentation(toolGroupId, segmentationRepresentationUID);
@@ -99,5 +104,5 @@ function _initializeDefaultConfig(segmentation) {
     };
     setGlobalConfig(newGlobalConfig, suppressEvents);
 }
-export { getDefaultSegmentationStateManager, getSegmentation, getSegmentations, addSegmentation, getSegmentationRepresentations, addSegmentationRepresentation, removeSegmentationRepresentation, getToolGroupSpecificConfig, setToolGroupSpecificConfig, getGlobalConfig, setGlobalConfig, getToolGroupsWithSegmentation, getSegmentationRepresentationByUID, addColorLUT, getColorLUT, };
+export { getDefaultSegmentationStateManager, getSegmentation, getSegmentations, addSegmentation, removeSegmentation, getSegmentationRepresentations, addSegmentationRepresentation, removeSegmentationRepresentation, getToolGroupSpecificConfig, setToolGroupSpecificConfig, getGlobalConfig, setGlobalConfig, getToolGroupsWithSegmentation, getSegmentationRepresentationByUID, addColorLUT, getColorLUT, };
 //# sourceMappingURL=segmentationState.js.map

package/dist/esm/stateManagement/segmentation/segmentationState.js.map

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package/dist/esm/stateManagement/segmentation/triggerSegmentationEvents.d.ts

@@ -1,5 +1,6 @@
+declare function triggerSegmentationRemoved(segmentationId: string): void;
 declare function triggerSegmentationRepresentationRemoved(toolGroupId: string, segmentationRepresentationUID: string): void;
 declare function triggerSegmentationRepresentationModified(toolGroupId: string, segmentationRepresentationUID?: string): void;
 declare function triggerSegmentationModified(segmentationId?: string): void;
 declare function triggerSegmentationDataModified(segmentationId: string, modifiedSlicesToUse?: number[]): void;
-export { triggerSegmentationRepresentationModified, triggerSegmentationRepresentationRemoved, triggerSegmentationDataModified, triggerSegmentationModified, };
+export { triggerSegmentationRepresentationModified, triggerSegmentationRepresentationRemoved, triggerSegmentationDataModified, triggerSegmentationModified, triggerSegmentationRemoved, };

package/dist/esm/stateManagement/segmentation/triggerSegmentationEvents.js

@@ -1,6 +1,12 @@
 import { triggerEvent, eventTarget } from '@cornerstonejs/core';
 import { Events } from '../../enums';
 import { getSegmentationRepresentations, getSegmentations, } from '../../stateManagement/segmentation/segmentationState';
+function triggerSegmentationRemoved(segmentationId) {
+    const eventDetail = {
+        segmentationId,
+    };
+    triggerEvent(eventTarget, Events.SEGMENTATION_REMOVED, eventDetail);
+}
 function triggerSegmentationRepresentationRemoved(toolGroupId, segmentationRepresentationUID) {
     const eventDetail = {
         toolGroupId,
@@ -49,5 +55,5 @@ function triggerSegmentationDataModified(segmentationId, modifiedSlicesToUse) {
     };
     triggerEvent(eventTarget, Events.SEGMENTATION_DATA_MODIFIED, eventDetail);
 }
-export { triggerSegmentationRepresentationModified, triggerSegmentationRepresentationRemoved, triggerSegmentationDataModified, triggerSegmentationModified, };
+export { triggerSegmentationRepresentationModified, triggerSegmentationRepresentationRemoved, triggerSegmentationDataModified, triggerSegmentationModified, triggerSegmentationRemoved, };
 //# sourceMappingURL=triggerSegmentationEvents.js.map

package/dist/esm/stateManagement/segmentation/triggerSegmentationEvents.js.map

@@ -1 +1 @@
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package/dist/esm/synchronizers/callbacks/voiSyncCallback.js

@@ -1,4 +1,4 @@
-import { getRenderingEngine, StackViewport, VolumeViewport, } from '@cornerstonejs/core';
+import { getRenderingEngine, StackViewport, triggerEvent, Enums, VolumeViewport, } from '@cornerstonejs/core';
 export default function voiSyncCallback(synchronizerInstance, sourceViewport, targetViewport, voiModifiedEvent) {
     const eventDetail = voiModifiedEvent.detail;
     const { volumeId, range } = eventDetail;
@@ -9,13 +9,23 @@ export default function voiSyncCallback(synchronizerInstance, sourceViewport, ta
     const tViewport = renderingEngine.getViewport(targetViewport.viewportId);
     if (tViewport instanceof VolumeViewport) {
         const actorEntry = tViewport.getActor(volumeId);
-        if (actorEntry) {
-            const volumeActor = actorEntry.actor;
-            volumeActor
-                .getProperty()
-                .getRGBTransferFunction(0)
-                .setRange(range.lower, range.upper);
+        if (!actorEntry) {
+            return;
         }
+        const volumeActor = actorEntry.actor;
+        volumeActor
+            .getProperty()
+            .getRGBTransferFunction(0)
+            .setRange(range.lower, range.upper);
+        const { element } = tViewport;
+        triggerEvent(element, Enums.Events.VOI_MODIFIED, {
+            volumeId,
+            viewportId: tViewport.id,
+            range: {
+                lower: range.lower,
+                upper: range.upper,
+            },
+        });
     }
     else if (tViewport instanceof StackViewport) {
         tViewport.setProperties({

package/dist/esm/synchronizers/callbacks/voiSyncCallback.js.map

@@ -1 +1 @@
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package/dist/esm/tools/CrosshairsTool.js

@@ -211,11 +211,12 @@ export default class CrosshairsTool extends AnnotationTool {
                 }
             }
             if (this.configuration.autoPan?.enabled) {
-                const viewports = csUtils.getVolumeViewportsContainingSameVolumes(viewport, renderingEngine.id);
-                viewports.forEach(({ id: viewportId }) => {
-                    if (viewportId !== viewport.id) {
-                        this._autoPanViewportIfNecessary(viewportId, renderingEngine);
-                    }
+                const toolGroup = getToolGroupForViewport(viewport.id, renderingEngine.id);
+                const otherViewportIds = toolGroup
+                    .getViewportIds()
+                    .filter((id) => id !== viewport.id);
+                otherViewportIds.forEach((viewportId) => {
+                    this._autoPanViewportIfNecessary(viewportId, renderingEngine);
                 });
             }
             triggerAnnotationRenderForViewportIds(renderingEngine, viewportIdsToRender);