@cornerstonejs/nifti-volume-loader 2.1.10 → 2.1.11

package/package.json

@@ -1,8 +1,7 @@
 {
   "name": "@cornerstonejs/nifti-volume-loader",
-  "version": "2.1.10",
+  "version": "2.1.11",
   "description": "Nifti Image Loader for Cornerstone3D",
-  "main": "./dist/umd/index.js",
   "module": "./dist/esm/index.js",
   "types": "./dist/esm/index.d.ts",
   "repository": "https://github.com/cornerstonejs/cornerstone3D",
@@ -63,7 +62,7 @@
     "nifti-reader-js": "^0.6.8"
   },
   "peerDependencies": {
-    "@cornerstonejs/core": "^2.1.10"
+    "@cornerstonejs/core": "^2.1.11"
   },
   "contributors": [
     {
@@ -76,5 +75,5 @@
     "type": "individual",
     "url": "https://ohif.org/donate"
   },
-  "gitHead": "bc2cfc38e87991cc71b974af55a7b75186d8d6ca"
+  "gitHead": "ee9c95b4cb88c5c1517c0a39ad76480a25726789"
 }

package/dist/umd/index.js

@@ -1,2 +0,0 @@
-!function(t,e){"object"==typeof exports&&"object"==typeof module?module.exports=e(require("@cornerstonejs/core"),require("gl-matrix")):"function"==typeof define&&define.amd?define(["@cornerstonejs/core","gl-matrix"],e):"object"==typeof exports?exports.cornerstoneNiftiVolumeLoader=e(require("@cornerstonejs/core"),require("gl-matrix")):t.cornerstoneNiftiVolumeLoader=e(t.cornerstone3D,t.window)}(self,((t,e)=>(()=>{"use strict";var i={237:(t,e)=>{Object.defineProperty(e,"__esModule",{value:!0}),e.NIFTIEXTENSION=void 0,e.NIFTIEXTENSION=class{esize;ecode;edata;littleEndian;constructor(t,e,i,n){if(t%16!=0)throw new Error("This does not appear to be a NIFTI extension");this.esize=t,this.ecode=e,this.edata=i,this.littleEndian=n}toArrayBuffer(){let t=new Uint8Array(this.esize),e=new Uint8Array(this.edata);t.set(e,8);let i=new DataView(t.buffer);return i.setInt32(0,this.esize,this.littleEndian),i.setInt32(4,this.ecode,this.littleEndian),t.buffer}}},130:function(t,e,i){var n=this&&this.__createBinding||(Object.create?function(t,e,i,n){void 0===n&&(n=i);var s=Object.getOwnPropertyDescriptor(e,i);s&&!("get"in s?!e.__esModule:s.writable||s.configurable)||(s={enumerable:!0,get:function(){return e[i]}}),Object.defineProperty(t,n,s)}:function(t,e,i,n){void 0===n&&(n=i),t[n]=e[i]}),s=this&&this.__setModuleDefault||(Object.create?function(t,e){Object.defineProperty(t,"default",{enumerable:!0,value:e})}:function(t,e){t.default=e}),r=this&&this.__importStar||function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)"default"!==i&&Object.prototype.hasOwnProperty.call(t,i)&&n(e,t,i);return s(e,t),e};Object.defineProperty(e,"__esModule",{value:!0}),e.readExtensionData=e.readExtension=e.readImage=e.hasExtension=e.readHeader=e.decompress=e.isCompressed=e.isNIFTI=e.isNIFTI2=e.isNIFTI1=e.NIFTIEXTENSION=e.Utils=e.NIFTI2=e.NIFTI1=void 0;const a=r(i(876)),o=i(232),l=i(103),h=i(517);var f=i(232);Object.defineProperty(e,"NIFTI1",{enumerable:!0,get:function(){return f.NIFTI1}});var c=i(103);Object.defineProperty(e,"NIFTI2",{enumerable:!0,get:function(){return c.NIFTI2}});var u=i(517);Object.defineProperty(e,"Utils",{enumerable:!0,get:function(){return u.Utils}});var d=i(237);function p(t,e=!1){var i,n,s,r;return!(t.byteLength<o.NIFTI1.STANDARD_HEADER_SIZE||((i=new DataView(t))&&(n=i.getUint8(o.NIFTI1.MAGIC_NUMBER_LOCATION)),s=i.getUint8(o.NIFTI1.MAGIC_NUMBER_LOCATION+1),r=i.getUint8(o.NIFTI1.MAGIC_NUMBER_LOCATION+2),!(e&&n===o.NIFTI1.MAGIC_NUMBER2[0]&&s===o.NIFTI1.MAGIC_NUMBER2[1]&&r===o.NIFTI1.MAGIC_NUMBER2[2]||n===o.NIFTI1.MAGIC_NUMBER[0]&&s===o.NIFTI1.MAGIC_NUMBER[1]&&r===o.NIFTI1.MAGIC_NUMBER[2])))}function g(t,e=!1){var i,n,s,r;return!(t.byteLength<o.NIFTI1.STANDARD_HEADER_SIZE||(n=(i=new DataView(t)).getUint8(l.NIFTI2.MAGIC_NUMBER_LOCATION),s=i.getUint8(l.NIFTI2.MAGIC_NUMBER_LOCATION+1),r=i.getUint8(l.NIFTI2.MAGIC_NUMBER_LOCATION+2),!(e&&n===l.NIFTI2.MAGIC_NUMBER2[0]&&s===l.NIFTI2.MAGIC_NUMBER2[1]&&r===l.NIFTI2.MAGIC_NUMBER2[2]||n===l.NIFTI2.MAGIC_NUMBER[0]&&s===l.NIFTI2.MAGIC_NUMBER[1]&&r===l.NIFTI2.MAGIC_NUMBER[2])))}function m(t){var e,i,n;if(t){if(i=(e=new DataView(t)).getUint8(0),n=e.getUint8(1),i===h.Utils.GUNZIP_MAGIC_COOKIE1)return!0;if(n===h.Utils.GUNZIP_MAGIC_COOKIE2)return!0}return!1}function _(t){return a.decompressSync(new Uint8Array(t)).buffer}Object.defineProperty(e,"NIFTIEXTENSION",{enumerable:!0,get:function(){return d.NIFTIEXTENSION}}),e.isNIFTI1=p,e.isNIFTI2=g,e.isNIFTI=function(t,e=!1){return p(t,e)||g(t,e)},e.isCompressed=m,e.decompress=_,e.readHeader=function(t,e=!1){var i=null;return m(t)&&(t=_(t)),p(t,e)?i=new o.NIFTI1:g(t,e)&&(i=new l.NIFTI2),i?i.readHeader(t):console.error("That file does not appear to be NIFTI!"),i},e.hasExtension=function(t){return 0!=t.extensionFlag[0]},e.readImage=function(t,e){var i=t.vox_offset,n=1,s=1;t.dims[4]&&(n=t.dims[4]),t.dims[5]&&(s=t.dims[5]);var r=t.dims[1]*t.dims[2]*t.dims[3]*n*s*(t.numBitsPerVoxel/8);return e.slice(i,i+r)},e.readExtension=function(t,e){var i=t.getExtensionLocation(),n=t.extensionSize;return e.slice(i,i+n)},e.readExtensionData=function(t,e){var i=t.getExtensionLocation(),n=t.extensionSize;return e.slice(i+8,i+n)}},232:(t,e,i)=>{Object.defineProperty(e,"__esModule",{value:!0}),e.NIFTI1=void 0;const n=i(517);class s{littleEndian=!1;dim_info=0;dims=[];intent_p1=0;intent_p2=0;intent_p3=0;intent_code=0;datatypeCode=0;numBitsPerVoxel=0;slice_start=0;slice_end=0;slice_code=0;pixDims=[];vox_offset=0;scl_slope=1;scl_inter=0;xyzt_units=0;cal_max=0;cal_min=0;slice_duration=0;toffset=0;description="";aux_file="";intent_name="";qform_code=0;sform_code=0;quatern_a=0;quatern_b=0;quatern_c=0;quatern_d=0;qoffset_x=0;qoffset_y=0;qoffset_z=0;affine=[[1,0,0,0],[0,1,0,0],[0,0,1,0],[0,0,0,1]];qfac=1;quatern_R;magic="0";isHDR=!1;extensionFlag=[0,0,0,0];extensionSize=0;extensionCode=0;extensions=[];static TYPE_NONE=0;static TYPE_BINARY=1;static TYPE_UINT8=2;static TYPE_INT16=4;static TYPE_INT32=8;static TYPE_FLOAT32=16;static TYPE_COMPLEX64=32;static TYPE_FLOAT64=64;static TYPE_RGB24=128;static TYPE_INT8=256;static TYPE_UINT16=512;static TYPE_UINT32=768;static TYPE_INT64=1024;static TYPE_UINT64=1280;static TYPE_FLOAT128=1536;static TYPE_COMPLEX128=1792;static TYPE_COMPLEX256=2048;static XFORM_UNKNOWN=0;static XFORM_SCANNER_ANAT=1;static XFORM_ALIGNED_ANAT=2;static XFORM_TALAIRACH=3;static XFORM_MNI_152=4;static SPATIAL_UNITS_MASK=7;static TEMPORAL_UNITS_MASK=56;static UNITS_UNKNOWN=0;static UNITS_METER=1;static UNITS_MM=2;static UNITS_MICRON=3;static UNITS_SEC=8;static UNITS_MSEC=16;static UNITS_USEC=24;static UNITS_HZ=32;static UNITS_PPM=40;static UNITS_RADS=48;static MAGIC_COOKIE=348;static STANDARD_HEADER_SIZE=348;static MAGIC_NUMBER_LOCATION=344;static MAGIC_NUMBER=[110,43,49];static MAGIC_NUMBER2=[110,105,49];static EXTENSION_HEADER_SIZE=8;readHeader(t){var e,i,r,a,o=new DataView(t),l=n.Utils.getIntAt(o,0,this.littleEndian);if(l!==s.MAGIC_COOKIE&&(this.littleEndian=!0,l=n.Utils.getIntAt(o,0,this.littleEndian)),l!==s.MAGIC_COOKIE)throw new Error("This does not appear to be a NIFTI file!");for(this.dim_info=n.Utils.getByteAt(o,39),e=0;e<8;e+=1)a=40+2*e,this.dims[e]=n.Utils.getShortAt(o,a,this.littleEndian);for(this.intent_p1=n.Utils.getFloatAt(o,56,this.littleEndian),this.intent_p2=n.Utils.getFloatAt(o,60,this.littleEndian),this.intent_p3=n.Utils.getFloatAt(o,64,this.littleEndian),this.intent_code=n.Utils.getShortAt(o,68,this.littleEndian),this.datatypeCode=n.Utils.getShortAt(o,70,this.littleEndian),this.numBitsPerVoxel=n.Utils.getShortAt(o,72,this.littleEndian),this.slice_start=n.Utils.getShortAt(o,74,this.littleEndian),e=0;e<8;e+=1)a=76+4*e,this.pixDims[e]=n.Utils.getFloatAt(o,a,this.littleEndian);if(this.vox_offset=n.Utils.getFloatAt(o,108,this.littleEndian),this.scl_slope=n.Utils.getFloatAt(o,112,this.littleEndian),this.scl_inter=n.Utils.getFloatAt(o,116,this.littleEndian),this.slice_end=n.Utils.getShortAt(o,120,this.littleEndian),this.slice_code=n.Utils.getByteAt(o,122),this.xyzt_units=n.Utils.getByteAt(o,123),this.cal_max=n.Utils.getFloatAt(o,124,this.littleEndian),this.cal_min=n.Utils.getFloatAt(o,128,this.littleEndian),this.slice_duration=n.Utils.getFloatAt(o,132,this.littleEndian),this.toffset=n.Utils.getFloatAt(o,136,this.littleEndian),this.description=n.Utils.getStringAt(o,148,228),this.aux_file=n.Utils.getStringAt(o,228,252),this.qform_code=n.Utils.getShortAt(o,252,this.littleEndian),this.sform_code=n.Utils.getShortAt(o,254,this.littleEndian),this.quatern_b=n.Utils.getFloatAt(o,256,this.littleEndian),this.quatern_c=n.Utils.getFloatAt(o,260,this.littleEndian),this.quatern_d=n.Utils.getFloatAt(o,264,this.littleEndian),this.quatern_a=Math.sqrt(1-(Math.pow(this.quatern_b,2)+Math.pow(this.quatern_c,2)+Math.pow(this.quatern_d,2))),this.qoffset_x=n.Utils.getFloatAt(o,268,this.littleEndian),this.qoffset_y=n.Utils.getFloatAt(o,272,this.littleEndian),this.qoffset_z=n.Utils.getFloatAt(o,276,this.littleEndian),this.qform_code<1&&this.sform_code<1&&(this.affine[0][0]=this.pixDims[1],this.affine[1][1]=this.pixDims[2],this.affine[2][2]=this.pixDims[3]),this.qform_code>0&&this.sform_code<this.qform_code){const t=this.quatern_a,e=this.quatern_b,n=this.quatern_c,s=this.quatern_d;for(this.qfac=0===this.pixDims[0]?1:this.pixDims[0],this.quatern_R=[[t*t+e*e-n*n-s*s,2*e*n-2*t*s,2*e*s+2*t*n],[2*e*n+2*t*s,t*t+n*n-e*e-s*s,2*n*s-2*t*e],[2*e*s-2*t*n,2*n*s+2*t*e,t*t+s*s-n*n-e*e]],i=0;i<3;i+=1)for(r=0;r<3;r+=1)this.affine[i][r]=this.quatern_R[i][r]*this.pixDims[r+1],2===r&&(this.affine[i][r]*=this.qfac);this.affine[0][3]=this.qoffset_x,this.affine[1][3]=this.qoffset_y,this.affine[2][3]=this.qoffset_z}else if(this.sform_code>0)for(i=0;i<3;i+=1)for(r=0;r<4;r+=1)a=280+4*(4*i+r),this.affine[i][r]=n.Utils.getFloatAt(o,a,this.littleEndian);if(this.affine[3][0]=0,this.affine[3][1]=0,this.affine[3][2]=0,this.affine[3][3]=1,this.intent_name=n.Utils.getStringAt(o,328,344),this.magic=n.Utils.getStringAt(o,344,348),this.isHDR=this.magic===String.fromCharCode.apply(null,s.MAGIC_NUMBER2),o.byteLength>s.MAGIC_COOKIE){this.extensionFlag[0]=n.Utils.getByteAt(o,348),this.extensionFlag[1]=n.Utils.getByteAt(o,349),this.extensionFlag[2]=n.Utils.getByteAt(o,350),this.extensionFlag[3]=n.Utils.getByteAt(o,351);let t=!0;!this.isHDR&&this.vox_offset<=352&&(t=!1),o.byteLength<=368&&(t=!1),t&&this.extensionFlag[0]&&(this.extensions=n.Utils.getExtensionsAt(o,this.getExtensionLocation(),this.littleEndian,this.vox_offset),this.extensionSize=this.extensions[0].esize,this.extensionCode=this.extensions[0].ecode)}}toFormattedString(){var t=n.Utils.formatNumber,e="";return e+="Dim Info = "+this.dim_info+"\n",e+="Image Dimensions (1-8): "+this.dims[0]+", "+this.dims[1]+", "+this.dims[2]+", "+this.dims[3]+", "+this.dims[4]+", "+this.dims[5]+", "+this.dims[6]+", "+this.dims[7]+"\n",e+="Intent Parameters (1-3): "+this.intent_p1+", "+this.intent_p2+", "+this.intent_p3+"\n",e+="Intent Code = "+this.intent_code+"\n",e+="Datatype = "+this.datatypeCode+" ("+this.getDatatypeCodeString(this.datatypeCode)+")\n",e+="Bits Per Voxel = "+this.numBitsPerVoxel+"\n",e+="Slice Start = "+this.slice_start+"\n",e+="Voxel Dimensions (1-8): "+t(this.pixDims[0])+", "+t(this.pixDims[1])+", "+t(this.pixDims[2])+", "+t(this.pixDims[3])+", "+t(this.pixDims[4])+", "+t(this.pixDims[5])+", "+t(this.pixDims[6])+", "+t(this.pixDims[7])+"\n",e+="Image Offset = "+this.vox_offset+"\n",e+="Data Scale:  Slope = "+t(this.scl_slope)+"  Intercept = "+t(this.scl_inter)+"\n",e+="Slice End = "+this.slice_end+"\n",e+="Slice Code = "+this.slice_code+"\n",e+="Units Code = "+this.xyzt_units+" ("+this.getUnitsCodeString(s.SPATIAL_UNITS_MASK&this.xyzt_units)+", "+this.getUnitsCodeString(s.TEMPORAL_UNITS_MASK&this.xyzt_units)+")\n",e+="Display Range:  Max = "+t(this.cal_max)+"  Min = "+t(this.cal_min)+"\n",e+="Slice Duration = "+this.slice_duration+"\n",e+="Time Axis Shift = "+this.toffset+"\n",e+='Description: "'+this.description+'"\n',e+='Auxiliary File: "'+this.aux_file+'"\n',e+="Q-Form Code = "+this.qform_code+" ("+this.getTransformCodeString(this.qform_code)+")\n",e+="S-Form Code = "+this.sform_code+" ("+this.getTransformCodeString(this.sform_code)+")\n",e+="Quaternion Parameters:  b = "+t(this.quatern_b)+"  c = "+t(this.quatern_c)+"  d = "+t(this.quatern_d)+"\n",e+="Quaternion Offsets:  x = "+this.qoffset_x+"  y = "+this.qoffset_y+"  z = "+this.qoffset_z+"\n",e+="S-Form Parameters X: "+t(this.affine[0][0])+", "+t(this.affine[0][1])+", "+t(this.affine[0][2])+", "+t(this.affine[0][3])+"\n",e+="S-Form Parameters Y: "+t(this.affine[1][0])+", "+t(this.affine[1][1])+", "+t(this.affine[1][2])+", "+t(this.affine[1][3])+"\n",e+="S-Form Parameters Z: "+t(this.affine[2][0])+", "+t(this.affine[2][1])+", "+t(this.affine[2][2])+", "+t(this.affine[2][3])+"\n",e+='Intent Name: "'+this.intent_name+'"\n',this.extensionFlag[0]&&(e+="Extension: Size = "+this.extensionSize+"  Code = "+this.extensionCode+"\n"),e}getDatatypeCodeString=function(t){return t===s.TYPE_UINT8?"1-Byte Unsigned Integer":t===s.TYPE_INT16?"2-Byte Signed Integer":t===s.TYPE_INT32?"4-Byte Signed Integer":t===s.TYPE_FLOAT32?"4-Byte Float":t===s.TYPE_FLOAT64?"8-Byte Float":t===s.TYPE_RGB24?"RGB":t===s.TYPE_INT8?"1-Byte Signed Integer":t===s.TYPE_UINT16?"2-Byte Unsigned Integer":t===s.TYPE_UINT32?"4-Byte Unsigned Integer":t===s.TYPE_INT64?"8-Byte Signed Integer":t===s.TYPE_UINT64?"8-Byte Unsigned Integer":"Unknown"};getTransformCodeString=function(t){return t===s.XFORM_SCANNER_ANAT?"Scanner":t===s.XFORM_ALIGNED_ANAT?"Aligned":t===s.XFORM_TALAIRACH?"Talairach":t===s.XFORM_MNI_152?"MNI":"Unknown"};getUnitsCodeString=function(t){return t===s.UNITS_METER?"Meters":t===s.UNITS_MM?"Millimeters":t===s.UNITS_MICRON?"Microns":t===s.UNITS_SEC?"Seconds":t===s.UNITS_MSEC?"Milliseconds":t===s.UNITS_USEC?"Microseconds":t===s.UNITS_HZ?"Hz":t===s.UNITS_PPM?"PPM":t===s.UNITS_RADS?"Rads":"Unknown"};getQformMat(){return this.convertNiftiQFormToNiftiSForm(this.quatern_b,this.quatern_c,this.quatern_d,this.qoffset_x,this.qoffset_y,this.qoffset_z,this.pixDims[1],this.pixDims[2],this.pixDims[3],this.pixDims[0])}convertNiftiQFormToNiftiSForm(t,e,i,n,s,r,a,o,l,h){var f,c,u,d,p=[[0,0,0,0],[0,0,0,0],[0,0,0,0],[0,0,0,0]],g=t,m=e,_=i;return p[3][0]=p[3][1]=p[3][2]=0,p[3][3]=1,(f=1-(g*g+m*m+_*_))<1e-7?(g*=f=1/Math.sqrt(g*g+m*m+_*_),m*=f,_*=f,f=0):f=Math.sqrt(f),c=a>0?a:1,u=o>0?o:1,d=l>0?l:1,h<0&&(d=-d),p[0][0]=(f*f+g*g-m*m-_*_)*c,p[0][1]=2*(g*m-f*_)*u,p[0][2]=2*(g*_+f*m)*d,p[1][0]=2*(g*m+f*_)*c,p[1][1]=(f*f+m*m-g*g-_*_)*u,p[1][2]=2*(m*_-f*g)*d,p[2][0]=2*(g*_-f*m)*c,p[2][1]=2*(m*_+f*g)*u,p[2][2]=(f*f+_*_-m*m-g*g)*d,p[0][3]=n,p[1][3]=s,p[2][3]=r,p}convertNiftiSFormToNEMA(t){var e,i,n,s,r,a,o,l,h,f,c,u,d,p,g,m,_,v,I,E,y,A,T,x,N,U,b,F,w,S,M,C,D;if(p=0,U=[[0,0,0],[0,0,0],[0,0,0]],b=[[0,0,0],[0,0,0],[0,0,0]],e=t[0][0],i=t[0][1],n=t[0][2],s=t[1][0],r=t[1][1],a=t[1][2],o=t[2][0],l=t[2][1],h=t[2][2],0===(f=Math.sqrt(e*e+s*s+o*o)))return null;if(e/=f,s/=f,o/=f,0===(f=Math.sqrt(i*i+r*r+l*l)))return null;if(f=e*(i/=f)+s*(r/=f)+o*(l/=f),Math.abs(f)>1e-4){if(i-=f*e,r-=f*s,l-=f*o,0===(f=Math.sqrt(i*i+r*r+l*l)))return null;i/=f,r/=f,l/=f}if(0===(f=Math.sqrt(n*n+a*a+h*h))?(n=s*l-o*r,a=o*i-l*e,h=e*r-s*i):(n/=f,a/=f,h/=f),f=e*n+s*a+o*h,Math.abs(f)>1e-4){if(n-=f*e,a-=f*s,h-=f*o,0===(f=Math.sqrt(n*n+a*a+h*h)))return null;n/=f,a/=f,h/=f}if(f=i*n+r*a+l*h,Math.abs(f)>1e-4){if(n-=f*i,a-=f*r,h-=f*l,0===(f=Math.sqrt(n*n+a*a+h*h)))return null;n/=f,a/=f,h/=f}if(U[0][0]=e,U[0][1]=i,U[0][2]=n,U[1][0]=s,U[1][1]=r,U[1][2]=a,U[2][0]=o,U[2][1]=l,U[2][2]=h,0===(c=this.nifti_mat33_determ(U)))return null;for(N=-666,v=y=A=T=1,I=2,E=3,u=1;u<=3;u+=1)for(d=1;d<=3;d+=1)if(u!==d)for(p=1;p<=3;p+=1)if(u!==p&&d!==p)for(b[0][0]=b[0][1]=b[0][2]=b[1][0]=b[1][1]=b[1][2]=b[2][0]=b[2][1]=b[2][2]=0,g=-1;g<=1;g+=2)for(m=-1;m<=1;m+=2)for(_=-1;_<=1;_+=2)b[0][u-1]=g,b[1][d-1]=m,b[2][p-1]=_,this.nifti_mat33_determ(b)*c>0&&(f=(x=this.nifti_mat33_mul(b,U))[0][0]+x[1][1]+x[2][2])>N&&(N=f,v=u,I=d,E=p,y=g,A=m,T=_);switch(F=w=S=M=C=D="",v*y){case 1:F="X",M="+";break;case-1:F="X",M="-";break;case 2:F="Y",M="+";break;case-2:F="Y",M="-";break;case 3:F="Z",M="+";break;case-3:F="Z",M="-"}switch(I*A){case 1:w="X",C="+";break;case-1:w="X",C="-";break;case 2:w="Y",C="+";break;case-2:w="Y",C="-";break;case 3:w="Z",C="+";break;case-3:w="Z",C="-"}switch(E*T){case 1:S="X",D="+";break;case-1:S="X",D="-";break;case 2:S="Y",D="+";break;case-2:S="Y",D="-";break;case 3:S="Z",D="+";break;case-3:S="Z",D="-"}return F+w+S+M+C+D}nifti_mat33_mul=function(t,e){var i,n,s=[[0,0,0],[0,0,0],[0,0,0]];for(i=0;i<3;i+=1)for(n=0;n<3;n+=1)s[i][n]=t[i][0]*e[0][n]+t[i][1]*e[1][n]+t[i][2]*e[2][n];return s};nifti_mat33_determ=function(t){var e,i,n,s,r,a,o,l,h;return e=t[0][0],i=t[0][1],n=t[0][2],s=t[1][0],r=t[1][1],a=t[1][2],o=t[2][0],l=t[2][1],e*r*(h=t[2][2])-e*l*a-s*i*h+s*l*n+o*i*a-o*r*n};getExtensionLocation(){return s.MAGIC_COOKIE+4}getExtensionSize(t){return n.Utils.getIntAt(t,this.getExtensionLocation(),this.littleEndian)}getExtensionCode(t){return n.Utils.getIntAt(t,this.getExtensionLocation()+4,this.littleEndian)}addExtension(t,e=-1){-1==e?this.extensions.push(t):this.extensions.splice(e,0,t),this.vox_offset+=t.esize}removeExtension(t){let e=this.extensions[t];e&&(this.vox_offset-=e.esize),this.extensions.splice(t,1)}toArrayBuffer(t=!1){let e=352;if(t)for(let t of this.extensions)e+=t.esize;let i=new Uint8Array(e),n=new DataView(i.buffer);n.setInt32(0,348,this.littleEndian),n.setUint8(39,this.dim_info);for(let t=0;t<8;t++)n.setUint16(40+2*t,this.dims[t],this.littleEndian);n.setFloat32(56,this.intent_p1,this.littleEndian),n.setFloat32(60,this.intent_p2,this.littleEndian),n.setFloat32(64,this.intent_p3,this.littleEndian),n.setInt16(68,this.intent_code,this.littleEndian),n.setInt16(70,this.datatypeCode,this.littleEndian),n.setInt16(72,this.numBitsPerVoxel,this.littleEndian),n.setInt16(74,this.slice_start,this.littleEndian);for(let t=0;t<8;t++)n.setFloat32(76+4*t,this.pixDims[t],this.littleEndian);n.setFloat32(108,this.vox_offset,this.littleEndian),n.setFloat32(112,this.scl_slope,this.littleEndian),n.setFloat32(116,this.scl_inter,this.littleEndian),n.setInt16(120,this.slice_end,this.littleEndian),n.setUint8(122,this.slice_code),n.setUint8(123,this.xyzt_units),n.setFloat32(124,this.cal_max,this.littleEndian),n.setFloat32(128,this.cal_min,this.littleEndian),n.setFloat32(132,this.slice_duration,this.littleEndian),n.setFloat32(136,this.toffset,this.littleEndian),i.set(Buffer.from(this.description),148),i.set(Buffer.from(this.aux_file),228),n.setInt16(252,this.qform_code,this.littleEndian),n.setInt16(254,this.sform_code,this.littleEndian),n.setFloat32(256,this.quatern_b,this.littleEndian),n.setFloat32(260,this.quatern_c,this.littleEndian),n.setFloat32(264,this.quatern_d,this.littleEndian),n.setFloat32(268,this.qoffset_x,this.littleEndian),n.setFloat32(272,this.qoffset_y,this.littleEndian),n.setFloat32(276,this.qoffset_z,this.littleEndian);const s=this.affine.flat();for(let t=0;t<12;t++)n.setFloat32(280+4*t,s[t],this.littleEndian);if(i.set(Buffer.from(this.intent_name),328),i.set(Buffer.from(this.magic),344),t){i.set(Uint8Array.from([1,0,0,0]),348);let t=this.getExtensionLocation();for(const e of this.extensions)n.setInt32(t,e.esize,e.littleEndian),n.setInt32(t+4,e.ecode,e.littleEndian),i.set(new Uint8Array(e.edata),t+8),t+=e.esize}else i.set(new Uint8Array(4).fill(0),348);return i.buffer}}e.NIFTI1=s},103:(t,e,i)=>{Object.defineProperty(e,"__esModule",{value:!0}),e.NIFTI2=void 0;const n=i(232),s=i(517);class r{littleEndian=!1;dim_info=0;dims=[];intent_p1=0;intent_p2=0;intent_p3=0;intent_code=0;datatypeCode=0;numBitsPerVoxel=0;slice_start=0;slice_end=0;slice_code=0;pixDims=[];vox_offset=0;scl_slope=1;scl_inter=0;xyzt_units=0;cal_max=0;cal_min=0;slice_duration=0;toffset=0;description="";aux_file="";intent_name="";qform_code=0;sform_code=0;quatern_b=0;quatern_c=0;quatern_d=0;qoffset_x=0;qoffset_y=0;qoffset_z=0;affine=[[1,0,0,0],[0,1,0,0],[0,0,1,0],[0,0,0,1]];magic="0";extensionFlag=[0,0,0,0];extensions=[];extensionSize=0;extensionCode=0;static MAGIC_COOKIE=540;static MAGIC_NUMBER_LOCATION=4;static MAGIC_NUMBER=[110,43,50,0,13,10,26,10];static MAGIC_NUMBER2=[110,105,50,0,13,10,26,10];readHeader(t){var e,i,n,a,o=new DataView(t),l=s.Utils.getIntAt(o,0,this.littleEndian);if(l!==r.MAGIC_COOKIE&&(this.littleEndian=!0,l=s.Utils.getIntAt(o,0,this.littleEndian)),l!==r.MAGIC_COOKIE)throw new Error("This does not appear to be a NIFTI file!");for(this.magic=s.Utils.getStringAt(o,4,12),this.datatypeCode=s.Utils.getShortAt(o,12,this.littleEndian),this.numBitsPerVoxel=s.Utils.getShortAt(o,14,this.littleEndian),e=0;e<8;e+=1)a=16+8*e,this.dims[e]=s.Utils.getLongAt(o,a,this.littleEndian);for(this.intent_p1=s.Utils.getDoubleAt(o,80,this.littleEndian),this.intent_p2=s.Utils.getDoubleAt(o,88,this.littleEndian),this.intent_p3=s.Utils.getDoubleAt(o,96,this.littleEndian),e=0;e<8;e+=1)a=104+8*e,this.pixDims[e]=s.Utils.getDoubleAt(o,a,this.littleEndian);for(this.vox_offset=s.Utils.getLongAt(o,168,this.littleEndian),this.scl_slope=s.Utils.getDoubleAt(o,176,this.littleEndian),this.scl_inter=s.Utils.getDoubleAt(o,184,this.littleEndian),this.cal_max=s.Utils.getDoubleAt(o,192,this.littleEndian),this.cal_min=s.Utils.getDoubleAt(o,200,this.littleEndian),this.slice_duration=s.Utils.getDoubleAt(o,208,this.littleEndian),this.toffset=s.Utils.getDoubleAt(o,216,this.littleEndian),this.slice_start=s.Utils.getLongAt(o,224,this.littleEndian),this.slice_end=s.Utils.getLongAt(o,232,this.littleEndian),this.description=s.Utils.getStringAt(o,240,320),this.aux_file=s.Utils.getStringAt(o,320,344),this.qform_code=s.Utils.getIntAt(o,344,this.littleEndian),this.sform_code=s.Utils.getIntAt(o,348,this.littleEndian),this.quatern_b=s.Utils.getDoubleAt(o,352,this.littleEndian),this.quatern_c=s.Utils.getDoubleAt(o,360,this.littleEndian),this.quatern_d=s.Utils.getDoubleAt(o,368,this.littleEndian),this.qoffset_x=s.Utils.getDoubleAt(o,376,this.littleEndian),this.qoffset_y=s.Utils.getDoubleAt(o,384,this.littleEndian),this.qoffset_z=s.Utils.getDoubleAt(o,392,this.littleEndian),i=0;i<3;i+=1)for(n=0;n<4;n+=1)a=400+8*(4*i+n),this.affine[i][n]=s.Utils.getDoubleAt(o,a,this.littleEndian);this.affine[3][0]=0,this.affine[3][1]=0,this.affine[3][2]=0,this.affine[3][3]=1,this.slice_code=s.Utils.getIntAt(o,496,this.littleEndian),this.xyzt_units=s.Utils.getIntAt(o,500,this.littleEndian),this.intent_code=s.Utils.getIntAt(o,504,this.littleEndian),this.intent_name=s.Utils.getStringAt(o,508,524),this.dim_info=s.Utils.getByteAt(o,524),o.byteLength>r.MAGIC_COOKIE&&(this.extensionFlag[0]=s.Utils.getByteAt(o,540),this.extensionFlag[1]=s.Utils.getByteAt(o,541),this.extensionFlag[2]=s.Utils.getByteAt(o,542),this.extensionFlag[3]=s.Utils.getByteAt(o,543),this.extensionFlag[0]&&(this.extensions=s.Utils.getExtensionsAt(o,this.getExtensionLocation(),this.littleEndian,this.vox_offset),this.extensionSize=this.extensions[0].esize,this.extensionCode=this.extensions[0].ecode))}toFormattedString(){var t=s.Utils.formatNumber,e="";return e+="Datatype = "+ +this.datatypeCode+" ("+this.getDatatypeCodeString(this.datatypeCode)+")\n",e+="Bits Per Voxel =  = "+this.numBitsPerVoxel+"\n",e+="Image Dimensions (1-8): "+this.dims[0]+", "+this.dims[1]+", "+this.dims[2]+", "+this.dims[3]+", "+this.dims[4]+", "+this.dims[5]+", "+this.dims[6]+", "+this.dims[7]+"\n",e+="Intent Parameters (1-3): "+this.intent_p1+", "+this.intent_p2+", "+this.intent_p3+"\n",e+="Voxel Dimensions (1-8): "+t(this.pixDims[0])+", "+t(this.pixDims[1])+", "+t(this.pixDims[2])+", "+t(this.pixDims[3])+", "+t(this.pixDims[4])+", "+t(this.pixDims[5])+", "+t(this.pixDims[6])+", "+t(this.pixDims[7])+"\n",e+="Image Offset = "+this.vox_offset+"\n",e+="Data Scale:  Slope = "+t(this.scl_slope)+"  Intercept = "+t(this.scl_inter)+"\n",e+="Display Range:  Max = "+t(this.cal_max)+"  Min = "+t(this.cal_min)+"\n",e+="Slice Duration = "+this.slice_duration+"\n",e+="Time Axis Shift = "+this.toffset+"\n",e+="Slice Start = "+this.slice_start+"\n",e+="Slice End = "+this.slice_end+"\n",e+='Description: "'+this.description+'"\n',e+='Auxiliary File: "'+this.aux_file+'"\n',e+="Q-Form Code = "+this.qform_code+" ("+this.getTransformCodeString(this.qform_code)+")\n",e+="S-Form Code = "+this.sform_code+" ("+this.getTransformCodeString(this.sform_code)+")\n",e+="Quaternion Parameters:  b = "+t(this.quatern_b)+"  c = "+t(this.quatern_c)+"  d = "+t(this.quatern_d)+"\n",e+="Quaternion Offsets:  x = "+this.qoffset_x+"  y = "+this.qoffset_y+"  z = "+this.qoffset_z+"\n",e+="S-Form Parameters X: "+t(this.affine[0][0])+", "+t(this.affine[0][1])+", "+t(this.affine[0][2])+", "+t(this.affine[0][3])+"\n",e+="S-Form Parameters Y: "+t(this.affine[1][0])+", "+t(this.affine[1][1])+", "+t(this.affine[1][2])+", "+t(this.affine[1][3])+"\n",e+="S-Form Parameters Z: "+t(this.affine[2][0])+", "+t(this.affine[2][1])+", "+t(this.affine[2][2])+", "+t(this.affine[2][3])+"\n",e+="Slice Code = "+this.slice_code+"\n",e+="Units Code = "+this.xyzt_units+" ("+this.getUnitsCodeString(n.NIFTI1.SPATIAL_UNITS_MASK&this.xyzt_units)+", "+this.getUnitsCodeString(n.NIFTI1.TEMPORAL_UNITS_MASK&this.xyzt_units)+")\n",e+="Intent Code = "+this.intent_code+"\n",(e+='Intent Name: "'+this.intent_name+'"\n')+"Dim Info = "+this.dim_info+"\n"}getExtensionLocation=function(){return r.MAGIC_COOKIE+4};getExtensionSize=n.NIFTI1.prototype.getExtensionSize;getExtensionCode=n.NIFTI1.prototype.getExtensionCode;addExtension=n.NIFTI1.prototype.addExtension;removeExtension=n.NIFTI1.prototype.removeExtension;getDatatypeCodeString=n.NIFTI1.prototype.getDatatypeCodeString;getTransformCodeString=n.NIFTI1.prototype.getTransformCodeString;getUnitsCodeString=n.NIFTI1.prototype.getUnitsCodeString;getQformMat=n.NIFTI1.prototype.getQformMat;convertNiftiQFormToNiftiSForm=n.NIFTI1.prototype.convertNiftiQFormToNiftiSForm;convertNiftiSFormToNEMA=n.NIFTI1.prototype.convertNiftiSFormToNEMA;nifti_mat33_mul=n.NIFTI1.prototype.nifti_mat33_mul;nifti_mat33_determ=n.NIFTI1.prototype.nifti_mat33_determ;toArrayBuffer(t=!1){let e=544;if(t)for(let t of this.extensions)e+=t.esize;let i=new Uint8Array(e),n=new DataView(i.buffer);n.setInt32(0,540,this.littleEndian),i.set(Buffer.from(this.magic),4),n.setInt16(12,this.datatypeCode,this.littleEndian),n.setInt16(14,this.numBitsPerVoxel,this.littleEndian);for(let t=0;t<8;t++)n.setBigInt64(16+8*t,BigInt(this.dims[t]),this.littleEndian);n.setFloat64(80,this.intent_p1,this.littleEndian),n.setFloat64(88,this.intent_p2,this.littleEndian),n.setFloat64(96,this.intent_p3,this.littleEndian);for(let t=0;t<8;t++)n.setFloat64(104+8*t,this.pixDims[t],this.littleEndian);n.setBigInt64(168,BigInt(this.vox_offset),this.littleEndian),n.setFloat64(176,this.scl_slope,this.littleEndian),n.setFloat64(184,this.scl_inter,this.littleEndian),n.setFloat64(192,this.cal_max,this.littleEndian),n.setFloat64(200,this.cal_min,this.littleEndian),n.setFloat64(208,this.slice_duration,this.littleEndian),n.setFloat64(216,this.toffset,this.littleEndian),n.setBigInt64(224,BigInt(this.slice_start),this.littleEndian),n.setBigInt64(232,BigInt(this.slice_end),this.littleEndian),i.set(Buffer.from(this.description),240),i.set(Buffer.from(this.aux_file),320),n.setInt32(344,this.qform_code,this.littleEndian),n.setInt32(348,this.sform_code,this.littleEndian),n.setFloat64(352,this.quatern_b,this.littleEndian),n.setFloat64(360,this.quatern_c,this.littleEndian),n.setFloat64(368,this.quatern_d,this.littleEndian),n.setFloat64(376,this.qoffset_x,this.littleEndian),n.setFloat64(384,this.qoffset_y,this.littleEndian),n.setFloat64(392,this.qoffset_z,this.littleEndian);const s=this.affine.flat();for(let t=0;t<12;t++)n.setFloat64(400+8*t,s[t],this.littleEndian);if(n.setInt32(496,this.slice_code,this.littleEndian),n.setInt32(500,this.xyzt_units,this.littleEndian),n.setInt32(504,this.intent_code,this.littleEndian),i.set(Buffer.from(this.intent_name),508),n.setUint8(524,this.dim_info),t){i.set(Uint8Array.from([1,0,0,0]),540);let t=this.getExtensionLocation();for(const e of this.extensions)n.setInt32(t,e.esize,e.littleEndian),n.setInt32(t+4,e.ecode,e.littleEndian),i.set(new Uint8Array(e.edata),t+8),t+=e.esize}else i.set(new Uint8Array(4).fill(0),540);return i.buffer}}e.NIFTI2=r},517:(t,e,i)=>{Object.defineProperty(e,"__esModule",{value:!0}),e.Utils=void 0;const n=i(237);class s{static crcTable=null;static GUNZIP_MAGIC_COOKIE1=31;static GUNZIP_MAGIC_COOKIE2=139;static getStringAt(t,e,i){var n,s,r="";for(n=e;n<i;n+=1)0!==(s=t.getUint8(n))&&(r+=String.fromCharCode(s));return r}static getByteAt=function(t,e){return t.getInt8(e)};static getShortAt=function(t,e,i){return t.getInt16(e,i)};static getIntAt(t,e,i){return t.getInt32(e,i)}static getFloatAt(t,e,i){return t.getFloat32(e,i)}static getDoubleAt(t,e,i){return t.getFloat64(e,i)}static getLongAt(t,e,i){var n,r=[],a=0;for(n=0;n<8;n+=1)r[n]=s.getByteAt(t,e+n);for(n=r.length-1;n>=0;n--)a=256*a+r[n];return a}static getExtensionsAt(t,e,i,r){let a=[],o=e;for(;o<r;){let e=i,l=s.getIntAt(t,o,i);if(!l)break;if(l+o>r&&(e=!e,l=s.getIntAt(t,o,e),l+o>r))throw new Error("This does not appear to be a valid NIFTI extension");if(l%16!=0)throw new Error("This does not appear to be a NIFTI extension");let h=s.getIntAt(t,o+4,e),f=t.buffer.slice(o+8,o+l);console.log("extensionByteIndex: "+(o+8)+" esize: "+l),console.log(f);let c=new n.NIFTIEXTENSION(l,h,f,e);a.push(c),o+=l}return a}static toArrayBuffer(t){var e,i,n;for(e=new ArrayBuffer(t.length),i=new Uint8Array(e),n=0;n<t.length;n+=1)i[n]=t[n];return e}static isString(t){return"string"==typeof t||t instanceof String}static formatNumber(t,e=void 0){let i;return i=s.isString(t)?Number(t):t,i=e?i.toPrecision(5):i.toPrecision(7),parseFloat(i)}static makeCRCTable(){let t,e=[];for(var i=0;i<256;i++){t=i;for(var n=0;n<8;n++)t=1&t?3988292384^t>>>1:t>>>1;e[i]=t}return e}static crc32(t){s.crcTable||(s.crcTable=s.makeCRCTable());const e=s.crcTable;let i=-1;for(var n=0;n<t.byteLength;n++)i=i>>>8^e[255&(i^t.getUint8(n))];return~i>>>0}}e.Utils=s},953:e=>{e.exports=t},976:t=>{t.exports=e},876:(t,e,i)=>{var n=i(735),s=Uint8Array,r=Uint16Array,a=Uint32Array,o=new s([0,0,0,0,0,0,0,0,1,1,1,1,2,2,2,2,3,3,3,3,4,4,4,4,5,5,5,5,0,0,0,0]),l=new s([0,0,0,0,1,1,2,2,3,3,4,4,5,5,6,6,7,7,8,8,9,9,10,10,11,11,12,12,13,13,0,0]),h=new s([16,17,18,0,8,7,9,6,10,5,11,4,12,3,13,2,14,1,15]),f=function(t,e){for(var i=new r(31),n=0;n<31;++n)i[n]=e+=1<<t[n-1];var s=new a(i[30]);for(n=1;n<30;++n)for(var o=i[n];o<i[n+1];++o)s[o]=o-i[n]<<5|n;return[i,s]},c=f(o,2),u=c[0],d=c[1];u[28]=258,d[258]=28;for(var p=f(l,0),g=p[0],m=p[1],_=new 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