@cornerstonejs/labelmap-interpolation 3.0.0-beta.3
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- package/LICENSE +21 -0
- package/README.md +60 -0
- package/package.json +55 -0
package/LICENSE
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MIT License
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Copyright (c) 2019 Open Health Imaging Foundation
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in all
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copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.
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package/README.md
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# Cornerstone Segmentation Labelmap Interpolation
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This package provides a utility for interpolating labelmaps in 3D medical imaging. It leverages the power of `itk-wasm` and `@itk-wasm/morphological-contour-interpolation` to perform morphological contour interpolation between segmented slices.
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## Overview
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When creating segmentations in 3D medical imaging, it's often time-consuming to manually segment every slice. This package allows you to segment only a subset of slices and then automatically interpolate the segmentation between those slices, significantly reducing the time required for complete 3D segmentation.
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## Installation
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```bash
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npm install @cornerstonejs/labelmap-interpolation
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```
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## Usage
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### Basic Usage
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```typescript
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import { interpolate } from '@cornerstonejs/labelmap-interpolation';
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// Run interpolation on a specific segment
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interpolate({
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segmentationId: 'MY_SEGMENTATION_ID',
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segmentIndex: 1, // The segment index to interpolate
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});
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```
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### With Configuration Options
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```typescript
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import { interpolate } from '@cornerstonejs/labelmap-interpolation';
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// Run interpolation with custom configuration
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interpolate({
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segmentationId: 'MY_SEGMENTATION_ID',
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segmentIndex: 1,
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configuration: {
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axis: 2, // Axis along which to perform interpolation (0=X, 1=Y, 2=Z)
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noHeuristicAlignment: false, // Whether to disable heuristic alignment
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noUseDistanceTransform: false, // Whether to disable distance transform
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useCustomSlicePositions: false, // Whether to use custom slice positions
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preview: false // Whether to preview the interpolation result
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}
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});
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```
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## How It Works
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The interpolation process works by:
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1. Taking a segmentation volume with segments on non-adjacent slices
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2. Using morphological contour interpolation to fill in the missing slices
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3. Updating the segmentation volume with the interpolated data
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The package uses web workers to perform the interpolation in a background thread, preventing UI freezes during computation.
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## License
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MIT
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package/package.json
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{
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"name": "@cornerstonejs/labelmap-interpolation",
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"version": "3.0.0-beta.3",
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"description": "Labelmap Interpolation utility for Cornerstone3D",
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"files": [
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"dist"
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],
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"module": "./dist/esm/index.js",
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"types": "./dist/esm/index.d.ts",
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"directories": {
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"build": "dist"
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},
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"exports": {
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".": {
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"import": "./dist/esm/index.js",
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"types": "./dist/esm/index.d.ts"
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}
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},
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"publishConfig": {
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"access": "public"
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},
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"scripts": {
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"test": "jest --testTimeout 60000",
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"clean": "rimraf dist",
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"build": "yarn run build:esm",
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"build:esm": "tsc --project ./tsconfig.json",
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"build:esm:watch": "tsc --project ./tsconfig.json --watch",
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"dev": "tsc --project ./tsconfig.json --watch",
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"build:all": "yarn run build:esm",
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"build:update-api": "yarn run build:esm && api-extractor run --local",
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"start": "tsc --project ./tsconfig.json --watch",
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"format": "prettier --write 'src/**/*.js' 'test/**/*.js'",
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"lint": "eslint --fix ."
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},
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"repository": {
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"type": "git",
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"url": "git+https://github.com/cornerstonejs/cornerstone3D.git"
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},
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"author": "@cornerstonejs",
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"license": "MIT",
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"bugs": {
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"url": "https://github.com/cornerstonejs/cornerstone3D/issues"
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},
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"homepage": "https://github.com/cornerstonejs/cornerstone3D/blob/main/packages/labelmap-interpolation/README.md",
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"dependencies": {
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"@itk-wasm/morphological-contour-interpolation": "1.1.0",
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"itk-wasm": "1.0.0-b.165"
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},
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"peerDependencies": {
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"@cornerstonejs/core": "^3.0.0-beta.3",
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"@cornerstonejs/tools": "^3.0.0-beta.3",
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"@kitware/vtk.js": "^32.9.0"
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},
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"gitHead": "d2b29db96b3ecf98c9e9f0591978423dc9f6cb3f"
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}
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