@cornerstonejs/dicom-image-loader 1.78.1 → 2.0.0-beta.10

package/dist/esm/src/shared/decodeImageFrame.js

@@ -0,0 +1,269 @@
+import { ByteArray } from 'dicom-parser';
+import bilinear from './scaling/bilinear';
+import replicate from './scaling/replicate';
+import { expose } from 'comlink';
+import decodeLittleEndian from './decoders/decodeLittleEndian';
+import decodeBigEndian from './decoders/decodeBigEndian';
+import decodeRLE from './decoders/decodeRLE';
+import decodeJPEGBaseline8Bit from './decoders/decodeJPEGBaseline8Bit';
+import decodeJPEGBaseline12Bit from './decoders/decodeJPEGBaseline12Bit-js';
+import decodeJPEGLossless from './decoders/decodeJPEGLossless';
+import decodeJPEGLS from './decoders/decodeJPEGLS';
+import decodeJPEG2000 from './decoders/decodeJPEG2000';
+import decodeHTJ2K from './decoders/decodeHTJ2K';
+import applyModalityLUT from './scaling/scaleArray';
+import { ImageFrame, LoaderDecodeOptions, PixelDataTypedArray } from '../types';
+import getMinMax from './getMinMax';
+import getPixelDataTypeFromMinMax from './getPixelDataTypeFromMinMax';
+import isColorImage from './isColorImage';
+const imageUtils = {
+    bilinear,
+    replicate,
+};
+async function decodeImageFrame(imageFrame, transferSyntax, pixelData, decodeConfig, options, callbackFn) {
+    const start = new Date().getTime();
+    let decodePromise = null;
+    let opts;
+    switch (transferSyntax) {
+        case '1.2.840.10008.1.2':
+        case '1.2.840.10008.1.2.1':
+            decodePromise = decodeLittleEndian(imageFrame, pixelData);
+            break;
+        case '1.2.840.10008.1.2.2':
+            decodePromise = decodeBigEndian(imageFrame, pixelData);
+            break;
+        case '1.2.840.10008.1.2.1.99':
+            decodePromise = decodeLittleEndian(imageFrame, pixelData);
+            break;
+        case '1.2.840.10008.1.2.5':
+            decodePromise = decodeRLE(imageFrame, pixelData);
+            break;
+        case '1.2.840.10008.1.2.4.50':
+            opts = {
+                ...imageFrame,
+            };
+            decodePromise = decodeJPEGBaseline8Bit(pixelData, opts);
+            break;
+        case '1.2.840.10008.1.2.4.51':
+            decodePromise = decodeJPEGBaseline12Bit(imageFrame, pixelData);
+            break;
+        case '1.2.840.10008.1.2.4.57':
+            decodePromise = decodeJPEGLossless(imageFrame, pixelData);
+            break;
+        case '1.2.840.10008.1.2.4.70':
+            decodePromise = decodeJPEGLossless(imageFrame, pixelData);
+            break;
+        case '1.2.840.10008.1.2.4.80':
+            opts = {
+                signed: imageFrame.pixelRepresentation === 1,
+                bytesPerPixel: imageFrame.bitsAllocated <= 8 ? 1 : 2,
+                ...imageFrame,
+            };
+            decodePromise = decodeJPEGLS(pixelData, opts);
+            break;
+        case '1.2.840.10008.1.2.4.81':
+            opts = {
+                signed: imageFrame.pixelRepresentation === 1,
+                bytesPerPixel: imageFrame.bitsAllocated <= 8 ? 1 : 2,
+                ...imageFrame,
+            };
+            decodePromise = decodeJPEGLS(pixelData, opts);
+            break;
+        case '1.2.840.10008.1.2.4.90':
+            opts = {
+                ...imageFrame,
+            };
+            decodePromise = decodeJPEG2000(pixelData, opts);
+            break;
+        case '1.2.840.10008.1.2.4.91':
+            opts = {
+                ...imageFrame,
+            };
+            decodePromise = decodeJPEG2000(pixelData, opts);
+            break;
+        case '3.2.840.10008.1.2.4.96':
+        case '1.2.840.10008.1.2.4.201':
+        case '1.2.840.10008.1.2.4.202':
+        case '1.2.840.10008.1.2.4.203':
+            opts = {
+                ...imageFrame,
+            };
+            decodePromise = decodeHTJ2K(pixelData, opts);
+            break;
+        default:
+            throw new Error(`no decoder for transfer syntax ${transferSyntax}`);
+    }
+    if (!decodePromise) {
+        throw new Error('decodePromise not defined');
+    }
+    const decodedFrame = await decodePromise;
+    const postProcessed = postProcessDecodedPixels(decodedFrame, options, start, decodeConfig);
+    callbackFn?.(postProcessed);
+    return postProcessed;
+}
+function postProcessDecodedPixels(imageFrame, options, start, decodeConfig) {
+    const { use16BitDataType } = decodeConfig || {};
+    const shouldShift = imageFrame.pixelRepresentation !== undefined &&
+        imageFrame.pixelRepresentation === 1;
+    const shift = shouldShift && imageFrame.bitsStored !== undefined
+        ? 32 - imageFrame.bitsStored
+        : undefined;
+    if (shouldShift && shift !== undefined) {
+        for (let i = 0; i < imageFrame.pixelData.length; i++) {
+            imageFrame.pixelData[i] = (imageFrame.pixelData[i] << shift) >> shift;
+        }
+    }
+    let pixelDataArray = imageFrame.pixelData;
+    imageFrame.pixelDataLength = imageFrame.pixelData.length;
+    const { min: minBeforeScale, max: maxBeforeScale } = getMinMax(imageFrame.pixelData);
+    const typedArrayConstructors = {
+        Uint8Array,
+        Uint16Array: use16BitDataType ? Uint16Array : undefined,
+        Int16Array: use16BitDataType ? Int16Array : undefined,
+        Float32Array,
+    };
+    const type = options.targetBuffer?.type;
+    const canRenderFloat = typeof options.allowFloatRendering !== 'undefined'
+        ? options.allowFloatRendering
+        : true;
+    const invalidType = isColorImage(imageFrame.photometricInterpretation) &&
+        options.targetBuffer?.offset === undefined;
+    const willScale = options.preScale?.enabled;
+    const hasFloatRescale = willScale &&
+        Object.values(options.preScale.scalingParameters).some((v) => typeof v === 'number' && !Number.isInteger(v));
+    const disableScale = !options.preScale.enabled || (!canRenderFloat && hasFloatRescale);
+    if (type && !invalidType) {
+        pixelDataArray = _handleTargetBuffer(options, imageFrame, typedArrayConstructors, pixelDataArray);
+    }
+    else if (options.preScale.enabled && !disableScale) {
+        pixelDataArray = _handlePreScaleSetup(options, minBeforeScale, maxBeforeScale, imageFrame);
+    }
+    else {
+        pixelDataArray = _getDefaultPixelDataArray(minBeforeScale, maxBeforeScale, imageFrame);
+    }
+    let minAfterScale = minBeforeScale;
+    let maxAfterScale = maxBeforeScale;
+    if (options.preScale.enabled && !disableScale) {
+        const scalingParameters = options.preScale.scalingParameters;
+        _validateScalingParameters(scalingParameters);
+        const { rescaleSlope, rescaleIntercept } = scalingParameters;
+        const isSlopeAndInterceptNumbers = typeof rescaleSlope === 'number' && typeof rescaleIntercept === 'number';
+        if (isSlopeAndInterceptNumbers) {
+            applyModalityLUT(pixelDataArray, scalingParameters);
+            imageFrame.preScale = {
+                ...options.preScale,
+                scaled: true,
+            };
+            const { rescaleIntercept, rescaleSlope, suvbw } = scalingParameters;
+            minAfterScale = rescaleSlope * minBeforeScale + rescaleIntercept;
+            maxAfterScale = rescaleSlope * maxBeforeScale + rescaleIntercept;
+            if (suvbw) {
+                minAfterScale = minAfterScale * suvbw;
+                maxAfterScale = maxAfterScale * suvbw;
+            }
+        }
+    }
+    else if (disableScale) {
+        imageFrame.preScale = {
+            enabled: true,
+            scaled: false,
+        };
+        minAfterScale = minBeforeScale;
+        maxAfterScale = maxBeforeScale;
+    }
+    const hasTargetBuffer = options.targetBuffer !== undefined;
+    if (!hasTargetBuffer || !options.isSharedArrayBuffer) {
+        imageFrame.pixelData = pixelDataArray;
+    }
+    imageFrame.minAfterScale = minAfterScale;
+    imageFrame.maxAfterScale = maxAfterScale;
+    const end = new Date().getTime();
+    imageFrame.decodeTimeInMS = end - start;
+    return imageFrame;
+}
+function _handleTargetBuffer(options, imageFrame, typedArrayConstructors, pixelDataArray) {
+    const { arrayBuffer, type, offset: rawOffset = 0, length: rawLength, rows, } = options.targetBuffer;
+    const TypedArrayConstructor = typedArrayConstructors[type];
+    if (!TypedArrayConstructor) {
+        throw new Error(`target array ${type} is not supported, you need to set use16BitDataType to true if you want to use Uint16Array or Int16Array.`);
+    }
+    if (rows && rows != imageFrame.rows) {
+        scaleImageFrame(imageFrame, options.targetBuffer, TypedArrayConstructor);
+    }
+    const imageFrameLength = imageFrame.pixelDataLength;
+    const offset = rawOffset;
+    const length = rawLength !== null && rawLength !== undefined
+        ? rawLength
+        : imageFrameLength - offset;
+    const imageFramePixelData = imageFrame.pixelData;
+    if (length !== imageFramePixelData.length) {
+        throw new Error(`target array for image does not have the same length (${length}) as the decoded image length (${imageFramePixelData.length}).`);
+    }
+    const typedArray = arrayBuffer
+        ? new TypedArrayConstructor(arrayBuffer, offset, length)
+        : new TypedArrayConstructor(length);
+    typedArray.set(imageFramePixelData, 0);
+    pixelDataArray = typedArray;
+    return pixelDataArray;
+}
+function _handlePreScaleSetup(options, minBeforeScale, maxBeforeScale, imageFrame) {
+    const scalingParameters = options.preScale.scalingParameters;
+    _validateScalingParameters(scalingParameters);
+    const { rescaleSlope, rescaleIntercept } = scalingParameters;
+    const areSlopeAndInterceptNumbers = typeof rescaleSlope === 'number' && typeof rescaleIntercept === 'number';
+    let scaledMin = minBeforeScale;
+    let scaledMax = maxBeforeScale;
+    if (areSlopeAndInterceptNumbers) {
+        scaledMin = rescaleSlope * minBeforeScale + rescaleIntercept;
+        scaledMax = rescaleSlope * maxBeforeScale + rescaleIntercept;
+    }
+    return _getDefaultPixelDataArray(scaledMin, scaledMax, imageFrame);
+}
+function _getDefaultPixelDataArray(min, max, imageFrame) {
+    const TypedArrayConstructor = getPixelDataTypeFromMinMax(min, max);
+    const typedArray = new TypedArrayConstructor(imageFrame.pixelData.length);
+    typedArray.set(imageFrame.pixelData, 0);
+    return typedArray;
+}
+function _validateScalingParameters(scalingParameters) {
+    if (!scalingParameters) {
+        throw new Error('options.preScale.scalingParameters must be defined if preScale.enabled is true, and scalingParameters cannot be derived from the metadata providers.');
+    }
+}
+function createDestinationImage(imageFrame, targetBuffer, TypedArrayConstructor) {
+    const { samplesPerPixel } = imageFrame;
+    const { rows, columns } = targetBuffer;
+    const typedLength = rows * columns * samplesPerPixel;
+    const pixelData = new TypedArrayConstructor(typedLength);
+    const bytesPerPixel = pixelData.byteLength / typedLength;
+    return {
+        pixelData,
+        rows,
+        columns,
+        frameInfo: {
+            ...imageFrame.frameInfo,
+            rows,
+            columns,
+        },
+        imageInfo: {
+            ...imageFrame.imageInfo,
+            rows,
+            columns,
+            bytesPerPixel,
+        },
+    };
+}
+function scaleImageFrame(imageFrame, targetBuffer, TypedArrayConstructor) {
+    const dest = createDestinationImage(imageFrame, targetBuffer, TypedArrayConstructor);
+    const { scalingType = 'replicate' } = targetBuffer;
+    imageUtils[scalingType](imageFrame, dest);
+    Object.assign(imageFrame, dest);
+    return imageFrame;
+}
+const obj = {
+    decodeTask({ imageFrame, transferSyntax, decodeConfig, options, pixelData, callbackFn, }) {
+        return decodeImageFrame(imageFrame, transferSyntax, pixelData, decodeConfig, options, callbackFn);
+    },
+};
+expose(obj);
+//# sourceMappingURL=decodeImageFrame.js.map

package/dist/esm/src/shared/decodeImageFrame.js.map

@@ -0,0 +1 @@
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package/dist/esm/src/shared/decoders/decodeBigEndian.js

@@ -0,0 +1,29 @@
+function swap16(val) {
+    return ((val & 0xff) << 8) | ((val >> 8) & 0xff);
+}
+async function decodeBigEndian(imageFrame, pixelData) {
+    if (imageFrame.bitsAllocated === 16) {
+        let arrayBuffer = pixelData.buffer;
+        let offset = pixelData.byteOffset;
+        const length = pixelData.length;
+        if (offset % 2) {
+            arrayBuffer = arrayBuffer.slice(offset);
+            offset = 0;
+        }
+        if (imageFrame.pixelRepresentation === 0) {
+            imageFrame.pixelData = new Uint16Array(arrayBuffer, offset, length / 2);
+        }
+        else {
+            imageFrame.pixelData = new Int16Array(arrayBuffer, offset, length / 2);
+        }
+        for (let i = 0; i < imageFrame.pixelData.length; i++) {
+            imageFrame.pixelData[i] = swap16(imageFrame.pixelData[i]);
+        }
+    }
+    else if (imageFrame.bitsAllocated === 8) {
+        imageFrame.pixelData = pixelData;
+    }
+    return imageFrame;
+}
+export default decodeBigEndian;
+//# sourceMappingURL=decodeBigEndian.js.map

package/dist/esm/src/shared/decoders/decodeBigEndian.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"decodeBigEndian.js","sourceRoot":"","sources":["../../../../../src/shared/decoders/decodeBigEndian.ts"],"names":[],"mappings":"AAIA,SAAS,MAAM,CAAC,GAAG;IACjB,OAAO,CAAC,CAAC,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC;AACnD,CAAC;AAED,KAAK,UAAU,eAAe,CAC5B,UAAsB,EACtB,SAAoB;IAEpB,IAAI,UAAU,CAAC,aAAa,KAAK,EAAE,EAAE,CAAC;QACpC,IAAI,WAAW,GAAG,SAAS,CAAC,MAAM,CAAC;QAEnC,IAAI,MAAM,GAAG,SAAS,CAAC,UAAU,CAAC;QAClC,MAAM,MAAM,GAAG,SAAS,CAAC,MAAM,CAAC;QAIhC,IAAI,MAAM,GAAG,CAAC,EAAE,CAAC;YACf,WAAW,GAAG,WAAW,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC;YACxC,MAAM,GAAG,CAAC,CAAC;QACb,CAAC;QAED,IAAI,UAAU,CAAC,mBAAmB,KAAK,CAAC,EAAE,CAAC;YACzC,UAAU,CAAC,SAAS,GAAG,IAAI,WAAW,CAAC,WAAW,EAAE,MAAM,EAAE,MAAM,GAAG,CAAC,CAAC,CAAC;QAC1E,CAAC;aAAM,CAAC;YACN,UAAU,CAAC,SAAS,GAAG,IAAI,UAAU,CAAC,WAAW,EAAE,MAAM,EAAE,MAAM,GAAG,CAAC,CAAC,CAAC;QACzE,CAAC;QAED,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,SAAS,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;YACrD,UAAU,CAAC,SAAS,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,UAAU,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC;QAC5D,CAAC;IACH,CAAC;SAAM,IAAI,UAAU,CAAC,aAAa,KAAK,CAAC,EAAE,CAAC;QAC1C,UAAU,CAAC,SAAS,GAAG,SAAS,CAAC;IACnC,CAAC;IAED,OAAO,UAAU,CAAC;AACpB,CAAC;AAED,eAAe,eAAe,CAAC"}

package/dist/esm/src/shared/decoders/decodeHTJ2K.js

@@ -0,0 +1,110 @@
+import openJphFactory from '@cornerstonejs/codec-openjph/wasmjs';
+import openjphWasm from '@cornerstonejs/codec-openjph/wasm';
+const local = {
+    codec: undefined,
+    decoder: undefined,
+    decodeConfig: {},
+};
+function calculateSizeAtDecompositionLevel(decompositionLevel, frameWidth, frameHeight) {
+    const result = { width: frameWidth, height: frameHeight };
+    while (decompositionLevel > 0) {
+        result.width = Math.ceil(result.width / 2);
+        result.height = Math.ceil(result.height / 2);
+        decompositionLevel--;
+    }
+    return result;
+}
+export function initialize(decodeConfig) {
+    local.decodeConfig = decodeConfig;
+    if (local.codec) {
+        return Promise.resolve();
+    }
+    const openJphModule = openJphFactory({
+        locateFile: (f) => {
+            if (f.endsWith('.wasm')) {
+                return openjphWasm;
+            }
+            return f;
+        },
+    });
+    return new Promise((resolve, reject) => {
+        openJphModule.then((instance) => {
+            local.codec = instance;
+            local.decoder = new instance.HTJ2KDecoder();
+            resolve();
+        }, reject);
+    });
+}
+async function decodeAsync(compressedImageFrame, imageInfo) {
+    await initialize();
+    const decoder = new local.codec.HTJ2KDecoder();
+    const encodedBufferInWASM = decoder.getEncodedBuffer(compressedImageFrame.length);
+    encodedBufferInWASM.set(compressedImageFrame);
+    const decodeLevel = imageInfo.decodeLevel || 0;
+    decoder.decodeSubResolution(decodeLevel);
+    const frameInfo = decoder.getFrameInfo();
+    if (imageInfo.decodeLevel > 0) {
+        const { width, height } = calculateSizeAtDecompositionLevel(imageInfo.decodeLevel, frameInfo.width, frameInfo.height);
+        frameInfo.width = width;
+        frameInfo.height = height;
+    }
+    const decodedBufferInWASM = decoder.getDecodedBuffer();
+    const imageFrame = new Uint8Array(decodedBufferInWASM.length);
+    imageFrame.set(decodedBufferInWASM);
+    const imageOffset = `x: ${decoder.getImageOffset().x}, y: ${decoder.getImageOffset().y}`;
+    const numDecompositions = decoder.getNumDecompositions();
+    const numLayers = decoder.getNumLayers();
+    const progessionOrder = ['unknown', 'LRCP', 'RLCP', 'RPCL', 'PCRL', 'CPRL'][decoder.getProgressionOrder() + 1];
+    const reversible = decoder.getIsReversible();
+    const blockDimensions = `${decoder.getBlockDimensions().width} x ${decoder.getBlockDimensions().height}`;
+    const tileSize = `${decoder.getTileSize().width} x ${decoder.getTileSize().height}`;
+    const tileOffset = `${decoder.getTileOffset().x}, ${decoder.getTileOffset().y}`;
+    const decodedSize = `${decodedBufferInWASM.length.toLocaleString()} bytes`;
+    const compressionRatio = `${(decodedBufferInWASM.length / encodedBufferInWASM.length).toFixed(2)}:1`;
+    const encodedImageInfo = {
+        columns: frameInfo.width,
+        rows: frameInfo.height,
+        bitsPerPixel: frameInfo.bitsPerSample,
+        signed: frameInfo.isSigned,
+        bytesPerPixel: imageInfo.bytesPerPixel,
+        componentsPerPixel: frameInfo.componentCount,
+    };
+    let pixelData = getPixelData(frameInfo, decodedBufferInWASM);
+    const { buffer: b, byteOffset, byteLength } = pixelData;
+    const pixelDataArrayBuffer = b.slice(byteOffset, byteOffset + byteLength);
+    pixelData = new pixelData.constructor(pixelDataArrayBuffer);
+    const encodeOptions = {
+        imageOffset,
+        numDecompositions,
+        numLayers,
+        progessionOrder,
+        reversible,
+        blockDimensions,
+        tileSize,
+        tileOffset,
+        decodedSize,
+        compressionRatio,
+    };
+    return {
+        ...imageInfo,
+        pixelData,
+        imageInfo: encodedImageInfo,
+        encodeOptions,
+        ...encodeOptions,
+        ...encodedImageInfo,
+    };
+}
+function getPixelData(frameInfo, decodedBuffer) {
+    if (frameInfo.bitsPerSample > 8) {
+        if (frameInfo.isSigned) {
+            return new Int16Array(decodedBuffer.buffer, decodedBuffer.byteOffset, decodedBuffer.byteLength / 2);
+        }
+        return new Uint16Array(decodedBuffer.buffer, decodedBuffer.byteOffset, decodedBuffer.byteLength / 2);
+    }
+    if (frameInfo.isSigned) {
+        return new Int8Array(decodedBuffer.buffer, decodedBuffer.byteOffset, decodedBuffer.byteLength);
+    }
+    return new Uint8Array(decodedBuffer.buffer, decodedBuffer.byteOffset, decodedBuffer.byteLength);
+}
+export default decodeAsync;
+//# sourceMappingURL=decodeHTJ2K.js.map

package/dist/esm/src/shared/decoders/decodeHTJ2K.js.map

@@ -0,0 +1 @@
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package/dist/esm/src/shared/decoders/decodeJPEG2000.js

@@ -0,0 +1,94 @@
+import openJpegFactory from '@cornerstonejs/codec-openjpeg/decodewasmjs';
+import openjpegWasm from '@cornerstonejs/codec-openjpeg/decodewasm';
+const local = {
+    codec: undefined,
+    decoder: undefined,
+    decodeConfig: {},
+};
+export function initialize(decodeConfig) {
+    local.decodeConfig = decodeConfig;
+    if (local.codec) {
+        return Promise.resolve();
+    }
+    const openJpegModule = openJpegFactory({
+        locateFile: (f) => {
+            if (f.endsWith('.wasm')) {
+                return openjpegWasm.toString();
+            }
+            return f;
+        },
+    });
+    return new Promise((resolve, reject) => {
+        openJpegModule.then((instance) => {
+            local.codec = instance;
+            local.decoder = new instance.J2KDecoder();
+            resolve();
+        }, reject);
+    });
+}
+async function decodeAsync(compressedImageFrame, imageInfo) {
+    await initialize();
+    const decoder = local.decoder;
+    const encodedBufferInWASM = decoder.getEncodedBuffer(compressedImageFrame.length);
+    encodedBufferInWASM.set(compressedImageFrame);
+    decoder.decode();
+    const frameInfo = decoder.getFrameInfo();
+    const decodedBufferInWASM = decoder.getDecodedBuffer();
+    const imageFrame = new Uint8Array(decodedBufferInWASM.length);
+    imageFrame.set(decodedBufferInWASM);
+    const imageOffset = `x: ${decoder.getImageOffset().x}, y: ${decoder.getImageOffset().y}`;
+    const numDecompositions = decoder.getNumDecompositions();
+    const numLayers = decoder.getNumLayers();
+    const progessionOrder = ['unknown', 'LRCP', 'RLCP', 'RPCL', 'PCRL', 'CPRL'][decoder.getProgressionOrder() + 1];
+    const reversible = decoder.getIsReversible();
+    const blockDimensions = `${decoder.getBlockDimensions().width} x ${decoder.getBlockDimensions().height}`;
+    const tileSize = `${decoder.getTileSize().width} x ${decoder.getTileSize().height}`;
+    const tileOffset = `${decoder.getTileOffset().x}, ${decoder.getTileOffset().y}`;
+    const colorTransform = decoder.getColorSpace();
+    const decodedSize = `${decodedBufferInWASM.length.toLocaleString()} bytes`;
+    const compressionRatio = `${(decodedBufferInWASM.length / encodedBufferInWASM.length).toFixed(2)}:1`;
+    const encodedImageInfo = {
+        columns: frameInfo.width,
+        rows: frameInfo.height,
+        bitsPerPixel: frameInfo.bitsPerSample,
+        signed: frameInfo.isSigned,
+        bytesPerPixel: imageInfo.bytesPerPixel,
+        componentsPerPixel: frameInfo.componentCount,
+    };
+    const pixelData = getPixelData(frameInfo, decodedBufferInWASM);
+    const encodeOptions = {
+        imageOffset,
+        numDecompositions,
+        numLayers,
+        progessionOrder,
+        reversible,
+        blockDimensions,
+        tileSize,
+        tileOffset,
+        colorTransform,
+        decodedSize,
+        compressionRatio,
+    };
+    return {
+        ...imageInfo,
+        pixelData,
+        imageInfo: encodedImageInfo,
+        encodeOptions,
+        ...encodeOptions,
+        ...encodedImageInfo,
+    };
+}
+function getPixelData(frameInfo, decodedBuffer) {
+    if (frameInfo.bitsPerSample > 8) {
+        if (frameInfo.isSigned) {
+            return new Int16Array(decodedBuffer.buffer, decodedBuffer.byteOffset, decodedBuffer.byteLength / 2);
+        }
+        return new Uint16Array(decodedBuffer.buffer, decodedBuffer.byteOffset, decodedBuffer.byteLength / 2);
+    }
+    if (frameInfo.isSigned) {
+        return new Int8Array(decodedBuffer.buffer, decodedBuffer.byteOffset, decodedBuffer.byteLength);
+    }
+    return new Uint8Array(decodedBuffer.buffer, decodedBuffer.byteOffset, decodedBuffer.byteLength);
+}
+export default decodeAsync;
+//# sourceMappingURL=decodeJPEG2000.js.map

package/dist/esm/src/shared/decoders/decodeJPEG2000.js.map

@@ -0,0 +1 @@
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package/dist/esm/src/shared/decoders/decodeJPEGBaseline12Bit-js.js

@@ -0,0 +1,35 @@
+const local = {
+    JpegImage: undefined,
+    decodeConfig: {},
+};
+export function initialize(decodeConfig) {
+    local.decodeConfig = decodeConfig;
+    if (local.JpegImage) {
+        return Promise.resolve();
+    }
+    return new Promise((resolve, reject) => {
+        import('../../../codecs/jpeg').then(({ JpegImage }) => {
+            local.JpegImage = JpegImage;
+            resolve();
+        }, reject);
+    });
+}
+async function decodeJPEGBaseline12BitAsync(imageFrame, pixelData) {
+    await initialize();
+    if (typeof local.JpegImage === 'undefined') {
+        throw new Error('No JPEG Baseline decoder loaded');
+    }
+    const jpeg = new local.JpegImage();
+    jpeg.parse(pixelData);
+    jpeg.colorTransform = false;
+    if (imageFrame.bitsAllocated === 8) {
+        imageFrame.pixelData = jpeg.getData(imageFrame.columns, imageFrame.rows);
+        return imageFrame;
+    }
+    else if (imageFrame.bitsAllocated === 16) {
+        imageFrame.pixelData = jpeg.getData16(imageFrame.columns, imageFrame.rows);
+        return imageFrame;
+    }
+}
+export default decodeJPEGBaseline12BitAsync;
+//# sourceMappingURL=decodeJPEGBaseline12Bit-js.js.map

package/dist/esm/src/shared/decoders/decodeJPEGBaseline12Bit-js.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"decodeJPEGBaseline12Bit-js.js","sourceRoot":"","sources":["../../../../../src/shared/decoders/decodeJPEGBaseline12Bit-js.ts"],"names":[],"mappings":"AAGA,MAAM,KAAK,GAAG;IACZ,SAAS,EAAE,SAAS;IACpB,YAAY,EAAE,EAA2B;CAC1C,CAAC;AAEF,MAAM,UAAU,UAAU,CACxB,YAAoC;IAEpC,KAAK,CAAC,YAAY,GAAG,YAAY,CAAC;IAElC,IAAI,KAAK,CAAC,SAAS,EAAE,CAAC;QACpB,OAAO,OAAO,CAAC,OAAO,EAAE,CAAC;IAC3B,CAAC;IAED,OAAO,IAAI,OAAO,CAAC,CAAC,OAAO,EAAE,MAAM,EAAE,EAAE;QAErC,MAAM,CAAC,sBAAsB,CAAC,CAAC,IAAI,CAAC,CAAC,EAAE,SAAS,EAAE,EAAE,EAAE;YACpD,KAAK,CAAC,SAAS,GAAG,SAAS,CAAC;YAC5B,OAAO,EAAE,CAAC;QACZ,CAAC,EAAE,MAAM,CAAC,CAAC;IACb,CAAC,CAAC,CAAC;AACL,CAAC;AAED,KAAK,UAAU,4BAA4B,CACzC,UAAsB,EACtB,SAAoB;IAGpB,MAAM,UAAU,EAAE,CAAC;IACnB,IAAI,OAAO,KAAK,CAAC,SAAS,KAAK,WAAW,EAAE,CAAC;QAC3C,MAAM,IAAI,KAAK,CAAC,iCAAiC,CAAC,CAAC;IACrD,CAAC;IACD,MAAM,IAAI,GAAG,IAAI,KAAK,CAAC,SAAS,EAAE,CAAC;IAEnC,IAAI,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC;IAItB,IAAI,CAAC,cAAc,GAAG,KAAK,CAAC;IAE5B,IAAI,UAAU,CAAC,aAAa,KAAK,CAAC,EAAE,CAAC;QACnC,UAAU,CAAC,SAAS,GAAG,IAAI,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO,EAAE,UAAU,CAAC,IAAI,CAAC,CAAC;QAEzE,OAAO,UAAU,CAAC;IACpB,CAAC;SAAM,IAAI,UAAU,CAAC,aAAa,KAAK,EAAE,EAAE,CAAC;QAC3C,UAAU,CAAC,SAAS,GAAG,IAAI,CAAC,SAAS,CAAC,UAAU,CAAC,OAAO,EAAE,UAAU,CAAC,IAAI,CAAC,CAAC;QAE3E,OAAO,UAAU,CAAC;IACpB,CAAC;AACH,CAAC;AAED,eAAe,4BAA4B,CAAC"}

package/dist/esm/src/shared/decoders/decodeJPEGBaseline12Bit-wasm-not-yet-working.js

@@ -0,0 +1,2 @@
+"use strict";
+//# sourceMappingURL=decodeJPEGBaseline12Bit-wasm-not-yet-working.js.map

package/dist/esm/src/shared/decoders/decodeJPEGBaseline12Bit-wasm-not-yet-working.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"decodeJPEGBaseline12Bit-wasm-not-yet-working.js","sourceRoot":"","sources":["../../../../../src/shared/decoders/decodeJPEGBaseline12Bit-wasm-not-yet-working.ts"],"names":[],"mappings":""}

package/dist/esm/src/shared/decoders/decodeJPEGBaseline8Bit.js

@@ -0,0 +1,63 @@
+import libjpegTurboFactory from '@cornerstonejs/codec-libjpeg-turbo-8bit/decodewasmjs';
+import libjpegTurboWasm from '@cornerstonejs/codec-libjpeg-turbo-8bit/decodewasm';
+const local = {
+    codec: undefined,
+    decoder: undefined,
+};
+function initLibjpegTurbo() {
+    if (local.codec) {
+        return Promise.resolve();
+    }
+    const libjpegTurboModule = libjpegTurboFactory({
+        locateFile: (f) => {
+            if (f.endsWith('.wasm')) {
+                return libjpegTurboWasm.toString();
+            }
+            return f;
+        },
+    });
+    return new Promise((resolve, reject) => {
+        libjpegTurboModule.then((instance) => {
+            local.codec = instance;
+            local.decoder = new instance.JPEGDecoder();
+            resolve();
+        }, reject);
+    });
+}
+async function decodeAsync(compressedImageFrame, imageInfo) {
+    await initLibjpegTurbo();
+    const decoder = local.decoder;
+    const encodedBufferInWASM = decoder.getEncodedBuffer(compressedImageFrame.length);
+    encodedBufferInWASM.set(compressedImageFrame);
+    decoder.decode();
+    const frameInfo = decoder.getFrameInfo();
+    const decodedPixelsInWASM = decoder.getDecodedBuffer();
+    const encodedImageInfo = {
+        columns: frameInfo.width,
+        rows: frameInfo.height,
+        bitsPerPixel: frameInfo.bitsPerSample,
+        signed: imageInfo.signed,
+        bytesPerPixel: imageInfo.bytesPerPixel,
+        componentsPerPixel: frameInfo.componentCount,
+    };
+    const pixelData = getPixelData(frameInfo, decodedPixelsInWASM);
+    const encodeOptions = {
+        frameInfo,
+    };
+    return {
+        ...imageInfo,
+        pixelData,
+        imageInfo: encodedImageInfo,
+        encodeOptions,
+        ...encodeOptions,
+        ...encodedImageInfo,
+    };
+}
+function getPixelData(frameInfo, decodedBuffer) {
+    if (frameInfo.isSigned) {
+        return new Int8Array(decodedBuffer.buffer, decodedBuffer.byteOffset, decodedBuffer.byteLength);
+    }
+    return new Uint8Array(decodedBuffer.buffer, decodedBuffer.byteOffset, decodedBuffer.byteLength);
+}
+export default decodeAsync;
+//# sourceMappingURL=decodeJPEGBaseline8Bit.js.map