@cornerstonejs/core 1.32.3 → 1.34.0

package/dist/cjs/utilities/index.js.map

@@ -1 +1 @@
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package/dist/cjs/utilities/isValidVolume.d.ts

@@ -0,0 +1,2 @@
+declare function isValidVolume(imageIds: string[]): boolean;
+export { isValidVolume };

package/dist/cjs/utilities/isValidVolume.js

@@ -0,0 +1,35 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.isValidVolume = void 0;
+const __1 = require("..");
+const isEqual_1 = __importDefault(require("./isEqual"));
+function isValidVolume(imageIds) {
+    const imageId0 = imageIds[0];
+    const { modality, seriesInstanceUID } = __1.metaData.get('generalSeriesModule', imageId0);
+    const { imageOrientationPatient, pixelSpacing, frameOfReferenceUID, columns, rows, } = __1.metaData.get('imagePlaneModule', imageId0);
+    const baseMetadata = {
+        modality,
+        imageOrientationPatient,
+        pixelSpacing,
+        frameOfReferenceUID,
+        columns,
+        rows,
+        seriesInstanceUID,
+    };
+    const validVolume = imageIds.every((imageId) => {
+        const { modality, seriesInstanceUID } = __1.metaData.get('generalSeriesModule', imageId);
+        const { imageOrientationPatient, pixelSpacing, columns, rows } = __1.metaData.get('imagePlaneModule', imageId);
+        return (seriesInstanceUID === baseMetadata.seriesInstanceUID &&
+            modality === baseMetadata.modality &&
+            columns === baseMetadata.columns &&
+            rows === baseMetadata.rows &&
+            (0, isEqual_1.default)(imageOrientationPatient, baseMetadata.imageOrientationPatient) &&
+            (0, isEqual_1.default)(pixelSpacing, baseMetadata.pixelSpacing));
+    });
+    return validVolume;
+}
+exports.isValidVolume = isValidVolume;
+//# sourceMappingURL=isValidVolume.js.map

package/dist/cjs/utilities/isValidVolume.js.map

@@ -0,0 +1 @@
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package/dist/cjs/utilities/makeVolumeMetadata.d.ts

@@ -0,0 +1,2 @@
+import { Metadata } from '../types';
+export default function makeVolumeMetadata(imageIds: Array<string>): Metadata;

package/dist/cjs/utilities/makeVolumeMetadata.js

@@ -0,0 +1,55 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+const __1 = require("../");
+function makeVolumeMetadata(imageIds) {
+    const imageId0 = imageIds[0];
+    const { pixelRepresentation, bitsAllocated, bitsStored, highBit, photometricInterpretation, samplesPerPixel, } = __1.metaData.get('imagePixelModule', imageId0);
+    const voiLut = [];
+    const voiLutModule = __1.metaData.get('voiLutModule', imageId0);
+    let voiLUTFunction;
+    if (voiLutModule) {
+        const { windowWidth, windowCenter } = voiLutModule;
+        voiLUTFunction = voiLutModule === null || voiLutModule === void 0 ? void 0 : voiLutModule.voiLUTFunction;
+        if (Array.isArray(windowWidth)) {
+            for (let i = 0; i < windowWidth.length; i++) {
+                voiLut.push({
+                    windowWidth: windowWidth[i],
+                    windowCenter: windowCenter[i],
+                });
+            }
+        }
+        else {
+            voiLut.push({
+                windowWidth: windowWidth,
+                windowCenter: windowCenter,
+            });
+        }
+    }
+    else {
+        voiLut.push({
+            windowWidth: undefined,
+            windowCenter: undefined,
+        });
+    }
+    const { modality, seriesInstanceUID } = __1.metaData.get('generalSeriesModule', imageId0);
+    const { imageOrientationPatient, pixelSpacing, frameOfReferenceUID, columns, rows, } = __1.metaData.get('imagePlaneModule', imageId0);
+    return {
+        BitsAllocated: bitsAllocated,
+        BitsStored: bitsStored,
+        SamplesPerPixel: samplesPerPixel,
+        HighBit: highBit,
+        PhotometricInterpretation: photometricInterpretation,
+        PixelRepresentation: pixelRepresentation,
+        Modality: modality,
+        ImageOrientationPatient: imageOrientationPatient,
+        PixelSpacing: pixelSpacing,
+        FrameOfReferenceUID: frameOfReferenceUID,
+        Columns: columns,
+        Rows: rows,
+        voiLut,
+        VOILUTFunction: voiLUTFunction,
+        SeriesInstanceUID: seriesInstanceUID,
+    };
+}
+exports.default = makeVolumeMetadata;
+//# sourceMappingURL=makeVolumeMetadata.js.map

package/dist/cjs/utilities/makeVolumeMetadata.js.map

@@ -0,0 +1 @@
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package/dist/cjs/utilities/sortImageIdsAndGetSpacing.d.ts

@@ -0,0 +1,9 @@
+import { vec3 } from 'gl-matrix';
+import { Point3 } from '../types';
+declare type SortedImageIdsItem = {
+    zSpacing: number;
+    origin: Point3;
+    sortedImageIds: Array<string>;
+};
+export default function sortImageIdsAndGetSpacing(imageIds: Array<string>, scanAxisNormal?: vec3): SortedImageIdsItem;
+export {};

package/dist/cjs/utilities/sortImageIdsAndGetSpacing.js

@@ -0,0 +1,82 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+const gl_matrix_1 = require("gl-matrix");
+const __1 = require("../");
+function sortImageIdsAndGetSpacing(imageIds, scanAxisNormal) {
+    const { imagePositionPatient: referenceImagePositionPatient, imageOrientationPatient, } = __1.metaData.get('imagePlaneModule', imageIds[0]);
+    if (!scanAxisNormal) {
+        const rowCosineVec = gl_matrix_1.vec3.fromValues(imageOrientationPatient[0], imageOrientationPatient[1], imageOrientationPatient[2]);
+        const colCosineVec = gl_matrix_1.vec3.fromValues(imageOrientationPatient[3], imageOrientationPatient[4], imageOrientationPatient[5]);
+        scanAxisNormal = gl_matrix_1.vec3.create();
+        gl_matrix_1.vec3.cross(scanAxisNormal, rowCosineVec, colCosineVec);
+    }
+    const refIppVec = gl_matrix_1.vec3.create();
+    const usingWadoUri = imageIds[0].split(':')[0] === 'wadouri';
+    gl_matrix_1.vec3.set(refIppVec, referenceImagePositionPatient[0], referenceImagePositionPatient[1], referenceImagePositionPatient[2]);
+    let sortedImageIds;
+    let zSpacing;
+    function getDistance(imageId) {
+        const { imagePositionPatient } = __1.metaData.get('imagePlaneModule', imageId);
+        const positionVector = gl_matrix_1.vec3.create();
+        gl_matrix_1.vec3.sub(positionVector, referenceImagePositionPatient, imagePositionPatient);
+        return gl_matrix_1.vec3.dot(positionVector, scanAxisNormal);
+    }
+    if (!usingWadoUri) {
+        const distanceImagePairs = imageIds.map((imageId) => {
+            const distance = getDistance(imageId);
+            return {
+                distance,
+                imageId,
+            };
+        });
+        distanceImagePairs.sort((a, b) => b.distance - a.distance);
+        sortedImageIds = distanceImagePairs.map((a) => a.imageId);
+        const numImages = distanceImagePairs.length;
+        zSpacing =
+            Math.abs(distanceImagePairs[numImages - 1].distance -
+                distanceImagePairs[0].distance) /
+                (numImages - 1);
+    }
+    else {
+        const prefetchedImageIds = [
+            imageIds[0],
+            imageIds[Math.floor(imageIds.length / 2)],
+        ];
+        sortedImageIds = imageIds;
+        const firstImageDistance = getDistance(prefetchedImageIds[0]);
+        const middleImageDistance = getDistance(prefetchedImageIds[1]);
+        if (firstImageDistance - middleImageDistance < 0) {
+            sortedImageIds.reverse();
+        }
+        const metadataForMiddleImage = __1.metaData.get('imagePlaneModule', prefetchedImageIds[1]);
+        if (!metadataForMiddleImage) {
+            throw new Error('Incomplete metadata required for volume construction.');
+        }
+        const positionVector = gl_matrix_1.vec3.create();
+        gl_matrix_1.vec3.sub(positionVector, referenceImagePositionPatient, metadataForMiddleImage.imagePositionPatient);
+        const distanceBetweenFirstAndMiddleImages = gl_matrix_1.vec3.dot(positionVector, scanAxisNormal);
+        zSpacing =
+            Math.abs(distanceBetweenFirstAndMiddleImages) /
+                Math.floor(imageIds.length / 2);
+    }
+    const { imagePositionPatient: origin, sliceThickness } = __1.metaData.get('imagePlaneModule', sortedImageIds[0]);
+    const { strictZSpacingForVolumeViewport } = (0, __1.getConfiguration)().rendering;
+    if (zSpacing === 0 && !strictZSpacingForVolumeViewport) {
+        if (sliceThickness) {
+            console.log('Could not calculate zSpacing. Using sliceThickness');
+            zSpacing = sliceThickness;
+        }
+        else {
+            console.log('Could not calculate zSpacing. The VolumeViewport visualization is compromised. Setting zSpacing to 1 to render');
+            zSpacing = 1;
+        }
+    }
+    const result = {
+        zSpacing,
+        origin,
+        sortedImageIds,
+    };
+    return result;
+}
+exports.default = sortImageIdsAndGetSpacing;
+//# sourceMappingURL=sortImageIdsAndGetSpacing.js.map

package/dist/cjs/utilities/sortImageIdsAndGetSpacing.js.map

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package/dist/cjs/utilities/updateVTKImageDataWithCornerstoneImage.d.ts

@@ -0,0 +1,4 @@
+import vtkImageData from '@kitware/vtk.js/Common/DataModel/ImageData';
+import { IImage } from '../types';
+declare function updateVTKImageDataWithCornerstoneImage(sourceImageData: vtkImageData, image: IImage): void;
+export { updateVTKImageDataWithCornerstoneImage };

package/dist/cjs/utilities/updateVTKImageDataWithCornerstoneImage.js

@@ -0,0 +1,27 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.updateVTKImageDataWithCornerstoneImage = void 0;
+function updateVTKImageDataWithCornerstoneImage(sourceImageData, image) {
+    const pixelData = image.getPixelData();
+    const scalarData = sourceImageData
+        .getPointData()
+        .getScalars()
+        .getData();
+    if (image.color && image.rgba) {
+        const newPixelData = new Uint8Array(image.columns * image.rows * 3);
+        for (let i = 0; i < image.columns * image.rows; i++) {
+            newPixelData[i * 3] = pixelData[i * 4];
+            newPixelData[i * 3 + 1] = pixelData[i * 4 + 1];
+            newPixelData[i * 3 + 2] = pixelData[i * 4 + 2];
+        }
+        image.rgba = false;
+        image.getPixelData = () => newPixelData;
+        scalarData.set(newPixelData);
+    }
+    else {
+        scalarData.set(pixelData);
+    }
+    sourceImageData.modified();
+}
+exports.updateVTKImageDataWithCornerstoneImage = updateVTKImageDataWithCornerstoneImage;
+//# sourceMappingURL=updateVTKImageDataWithCornerstoneImage.js.map

package/dist/cjs/utilities/updateVTKImageDataWithCornerstoneImage.js.map

@@ -0,0 +1 @@
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package/dist/esm/RenderingEngine/StackViewport.js

@@ -10,7 +10,7 @@ import vtkColorTransferFunction from '@kitware/vtk.js/Rendering/Core/ColorTransf
 import * as metaData from '../metaData';
 import Viewport from './Viewport';
 import eventTarget from '../eventTarget';
-import { triggerEvent, isEqual, invertRgbTransferFunction, createSigmoidRGBTransferFunction, windowLevel as windowLevelUtil, imageIdToURI, isImageActor, actorIsA, colormap as colormapUtils, imageRetrieveMetadataProvider, } from '../utilities';
+import { triggerEvent, isEqual, invertRgbTransferFunction, createSigmoidRGBTransferFunction, windowLevel as windowLevelUtil, imageIdToURI, isImageActor, actorIsA, colormap as colormapUtils, updateVTKImageDataWithCornerstoneImage, imageRetrieveMetadataProvider, } from '../utilities';
 import drawImageSync from './helpers/cpuFallback/drawImageSync';
 import { getColormap } from './helpers/cpuFallback/colors/index';
 import { loadAndCacheImage } from '../loaders/imageLoader';
@@ -984,7 +984,7 @@ class StackViewport extends Viewport {
         }
         return numberOfComponents;
     }
-    _getImageDataMetadata(image) {
+    getImageDataMetadata(image) {
         const { imagePlaneModule, imagePixelModule } = this.buildMetadata(image);
         let rowCosines, columnCosines;
         rowCosines = imagePlaneModule.rowCosines;
@@ -1033,19 +1033,30 @@ class StackViewport extends Viewport {
             viewUp: [viewUp[0], viewUp[1], viewUp[2]],
         };
     }
-    _createVTKImageData({ origin, direction, dimensions, spacing, numComps, pixelArray, }) {
+    createVTKImageData({ origin, direction, dimensions, spacing, numComps, pixelArray, }) {
         const values = new pixelArray.constructor(pixelArray.length);
         const scalarArray = vtkDataArray.newInstance({
             name: 'Pixels',
             numberOfComponents: numComps,
             values: values,
         });
-        this._imageData = vtkImageData.newInstance();
-        this._imageData.setDimensions(dimensions);
-        this._imageData.setSpacing(spacing);
-        this._imageData.setDirection(direction);
-        this._imageData.setOrigin(origin);
-        this._imageData.getPointData().setScalars(scalarArray);
+        const imageData = vtkImageData.newInstance();
+        imageData.setDimensions(dimensions);
+        imageData.setSpacing(spacing);
+        imageData.setDirection(direction);
+        imageData.setOrigin(origin);
+        imageData.getPointData().setScalars(scalarArray);
+        return imageData;
+    }
+    _createVTKImageData({ origin, direction, dimensions, spacing, numComps, pixelArray, }) {
+        this._imageData = this.createVTKImageData({
+            origin,
+            direction,
+            dimensions,
+            spacing,
+            numComps,
+            pixelArray,
+        });
     }
     async setStack(imageIds, currentImageIdIndex = 0) {
         this._throwIfDestroyed();
@@ -1116,27 +1127,7 @@ class StackViewport extends Viewport {
             origin = [0, 0, 0];
         }
         this._imageData.setOrigin(origin);
-        this._updatePixelData(image);
-    }
-    _updatePixelData(image) {
-        const pixelData = image.getPixelData();
-        const scalars = this._imageData.getPointData().getScalars();
-        const scalarData = scalars.getData();
-        if (image.color && image.rgba) {
-            const newPixelData = new Uint8Array(image.columns * image.rows * 3);
-            for (let i = 0; i < image.columns * image.rows; i++) {
-                newPixelData[i * 3] = pixelData[i * 4];
-                newPixelData[i * 3 + 1] = pixelData[i * 4 + 1];
-                newPixelData[i * 3 + 2] = pixelData[i * 4 + 2];
-            }
-            image.rgba = false;
-            image.getPixelData = () => newPixelData;
-            scalarData.set(newPixelData);
-        }
-        else {
-            scalarData.set(pixelData);
-        }
-        this._imageData.modified();
+        updateVTKImageDataWithCornerstoneImage(this._imageData, image);
     }
     _loadAndDisplayImage(imageId, imageIdIndex) {
         return this.useCPURendering
@@ -1318,7 +1309,7 @@ class StackViewport extends Viewport {
         });
     }
     _updateToDisplayImageCPU(image) {
-        const metadata = this._getImageDataMetadata(image);
+        const metadata = this.getImageDataMetadata(image);
         const viewport = getDefaultViewport(this.canvas, image, this.modality, this._cpuFallbackEnabledElement.viewport.colormap);
         const { windowCenter, windowWidth } = viewport.voi;
         this.voiRange = windowLevelUtil.toLowHighRange(windowWidth, windowCenter);
@@ -1335,6 +1326,29 @@ class StackViewport extends Viewport {
         this.cpuRenderingInvalidated = true;
         this._cpuFallbackEnabledElement.transform = calculateTransform(this._cpuFallbackEnabledElement);
     }
+    async addImages(stackInputs) {
+        const actors = this.getActors();
+        stackInputs.forEach((stackInput) => {
+            const image = cache.getImage(stackInput.imageId);
+            const { origin, dimensions, direction, spacing, numComps } = this.getImageDataMetadata(image);
+            const imagedata = this.createVTKImageData({
+                origin,
+                dimensions,
+                direction,
+                spacing,
+                numComps,
+                pixelArray: image.getPixelData(),
+            });
+            const imageActor = this.createActorMapper(imagedata);
+            if (imageActor) {
+                actors.push({ uid: stackInput.actorUID, actor: imageActor });
+                if (stackInput.callback) {
+                    stackInput.callback({ imageActor, imageId: stackInput.imageId });
+                }
+            }
+        });
+        this.setActors(actors);
+    }
     _updateActorToDisplayImageId(image) {
         const sameImageData = this._checkVTKImageDataMatchesCornerstoneImage(image, this._imageData);
         const activeCamera = this.getRenderer().getActiveCamera();
@@ -1356,7 +1370,7 @@ class StackViewport extends Viewport {
             this._setPropertiesFromCache();
             return;
         }
-        const { origin, direction, dimensions, spacing, numComps, imagePixelModule, } = this._getImageDataMetadata(image);
+        const { origin, direction, dimensions, spacing, numComps, imagePixelModule, } = this.getImageDataMetadata(image);
         this._createVTKImageData({
             origin,
             direction,