@cornerstonejs/core 0.1.1

package/dist/esm/RenderingEngine/Viewport.js.map

@@ -0,0 +1 @@
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package/dist/esm/RenderingEngine/VolumeViewport.d.ts

@@ -0,0 +1,31 @@
+import Viewport from './Viewport';
+import { Point2, Point3, IImageData, IVolumeInput } from '../types';
+import { ViewportInput } from '../types/IViewport';
+import { FlipDirection } from '../types';
+import type IVolumeViewport from '../types/IVolumeViewport';
+declare class VolumeViewport extends Viewport implements IVolumeViewport {
+    useCPURendering: boolean;
+    private _FrameOfReferenceUID;
+    constructor(props: ViewportInput);
+    static get useCustomRenderingPipeline(): boolean;
+    setVolumes(volumeInputArray: Array<IVolumeInput>, immediate?: boolean): Promise<void>;
+    addVolumes(volumeInputArray: Array<IVolumeInput>, immediate?: boolean): Promise<void>;
+    removeVolumeActors(actorUIDs: Array<string>, immediate?: boolean): void;
+    private _isValidVolumeInputArray;
+    getIntensityFromWorld(point: Point3): number;
+    getBounds(): number[];
+    flip(flipDirection: FlipDirection): void;
+    resetCamera(resetPanZoomForViewPlane?: boolean): boolean;
+    getFrameOfReferenceUID: () => string;
+    setSlabThickness(slabThickness: number): void;
+    getSlabThickness(): number;
+    getImageData(): IImageData | undefined;
+    getProperties: () => FlipDirection;
+    private _setVolumeActors;
+    canvasToWorld: (canvasPos: Point2) => Point3;
+    worldToCanvas: (worldPos: Point3) => Point2;
+    getCurrentImageIdIndex: () => number | undefined;
+    getCurrentImageId: () => string | undefined;
+    private _getImageIdIndex;
+}
+export default VolumeViewport;

package/dist/esm/RenderingEngine/VolumeViewport.js

@@ -0,0 +1,244 @@
+import { vec3 } from 'gl-matrix';
+import cache from '../cache';
+import ViewportType from '../enums/ViewportType';
+import Viewport from './Viewport';
+import { createVolumeActor } from './helpers';
+import { loadVolume } from '../volumeLoader';
+import vtkSlabCamera from './vtkClasses/vtkSlabCamera';
+import { getShouldUseCPURendering } from '../init';
+const EPSILON = 1e-3;
+class VolumeViewport extends Viewport {
+    constructor(props) {
+        super(props);
+        this.useCPURendering = false;
+        this.getFrameOfReferenceUID = () => {
+            return this._FrameOfReferenceUID;
+        };
+        this.getProperties = () => {
+            return {
+                flipHorizontal: this.flipHorizontal,
+                flipVertical: this.flipVertical,
+            };
+        };
+        this.canvasToWorld = (canvasPos) => {
+            const vtkCamera = this.getVtkActiveCamera();
+            const slabThicknessActive = vtkCamera.getSlabThicknessActive();
+            vtkCamera.setSlabThicknessActive(false);
+            const renderer = this.getRenderer();
+            const offscreenMultiRenderWindow = this.getRenderingEngine().offscreenMultiRenderWindow;
+            const openGLRenderWindow = offscreenMultiRenderWindow.getOpenGLRenderWindow();
+            const size = openGLRenderWindow.getSize();
+            const displayCoord = [canvasPos[0] + this.sx, canvasPos[1] + this.sy];
+            displayCoord[1] = size[1] - displayCoord[1];
+            let worldCoord = openGLRenderWindow.displayToWorld(displayCoord[0], displayCoord[1], 0, renderer);
+            vtkCamera.setSlabThicknessActive(slabThicknessActive);
+            worldCoord = this.applyFlipTx(worldCoord);
+            return worldCoord;
+        };
+        this.worldToCanvas = (worldPos) => {
+            const vtkCamera = this.getVtkActiveCamera();
+            const slabThicknessActive = vtkCamera.getSlabThicknessActive();
+            vtkCamera.setSlabThicknessActive(false);
+            const renderer = this.getRenderer();
+            const offscreenMultiRenderWindow = this.getRenderingEngine().offscreenMultiRenderWindow;
+            const openGLRenderWindow = offscreenMultiRenderWindow.getOpenGLRenderWindow();
+            const size = openGLRenderWindow.getSize();
+            const displayCoord = openGLRenderWindow.worldToDisplay(...this.applyFlipTx(worldPos), renderer);
+            displayCoord[1] = size[1] - displayCoord[1];
+            const canvasCoord = [
+                displayCoord[0] - this.sx,
+                displayCoord[1] - this.sy,
+            ];
+            vtkCamera.setSlabThicknessActive(slabThicknessActive);
+            return canvasCoord;
+        };
+        this.getCurrentImageIdIndex = () => {
+            return this._getImageIdIndex();
+        };
+        this.getCurrentImageId = () => {
+            const index = this._getImageIdIndex();
+            if (!index) {
+                return;
+            }
+            const { uid } = this.getDefaultActor();
+            const volume = cache.getVolume(uid);
+            if (!volume) {
+                return;
+            }
+            const imageIds = volume.imageIds;
+            return imageIds[index];
+        };
+        this._getImageIdIndex = () => {
+            const { viewPlaneNormal, focalPoint } = this.getCamera();
+            const { direction, origin, spacing } = this.getImageData();
+            const dir = direction.slice(direction.length - 3);
+            const dot = Math.abs(dir[0] * viewPlaneNormal[0] +
+                dir[1] * viewPlaneNormal[1] +
+                dir[2] * viewPlaneNormal[2]);
+            if (dot - 1 > EPSILON) {
+                return;
+            }
+            const spacingInNormal = spacing[2];
+            const sub = vec3.create();
+            vec3.sub(sub, focalPoint, origin);
+            const distance = vec3.dot(sub, viewPlaneNormal);
+            return Math.round(Math.abs(distance) / spacingInNormal);
+        };
+        this.useCPURendering = getShouldUseCPURendering();
+        if (this.useCPURendering) {
+            throw new Error('VolumeViewports cannot be used whilst CPU Fallback Rendering is enabled.');
+        }
+        const renderer = this.getRenderer();
+        const camera = vtkSlabCamera.newInstance();
+        renderer.setActiveCamera(camera);
+        switch (this.type) {
+            case ViewportType.ORTHOGRAPHIC:
+                camera.setParallelProjection(true);
+                break;
+            case ViewportType.PERSPECTIVE:
+                camera.setParallelProjection(false);
+                break;
+            default:
+                throw new Error(`Unrecognized viewport type: ${this.type}`);
+        }
+        const { sliceNormal, viewUp } = this.defaultOptions.orientation;
+        camera.setDirectionOfProjection(-sliceNormal[0], -sliceNormal[1], -sliceNormal[2]);
+        camera.setViewUpFrom(viewUp);
+        camera.setFreezeFocalPoint(true);
+        this.resetCamera();
+    }
+    static get useCustomRenderingPipeline() {
+        return false;
+    }
+    async setVolumes(volumeInputArray, immediate = false) {
+        const firstImageVolume = cache.getVolume(volumeInputArray[0].volumeUID);
+        if (!firstImageVolume) {
+            throw new Error(`imageVolume with uid: ${firstImageVolume.uid} does not exist`);
+        }
+        const FrameOfReferenceUID = firstImageVolume.metadata.FrameOfReferenceUID;
+        await this._isValidVolumeInputArray(volumeInputArray, FrameOfReferenceUID);
+        this._FrameOfReferenceUID = FrameOfReferenceUID;
+        const slabThicknessValues = [];
+        const volumeActors = [];
+        for (let i = 0; i < volumeInputArray.length; i++) {
+            const { volumeUID, slabThickness, actorUID } = volumeInputArray[i];
+            const volumeActor = await createVolumeActor(volumeInputArray[i]);
+            const uid = actorUID || volumeUID;
+            volumeActors.push({ uid, volumeActor, slabThickness });
+            if (slabThickness !== undefined &&
+                !slabThicknessValues.includes(slabThickness)) {
+                slabThicknessValues.push(slabThickness);
+            }
+        }
+        if (slabThicknessValues.length > 1) {
+            console.warn('Currently slab thickness for intensity projections is tied to the camera, not per volume, using the largest of the two volumes for this viewport.');
+        }
+        this._setVolumeActors(volumeActors);
+        if (immediate) {
+            this.render();
+        }
+    }
+    async addVolumes(volumeInputArray, immediate = false) {
+        const volumeActors = [];
+        await this._isValidVolumeInputArray(volumeInputArray, this._FrameOfReferenceUID);
+        for (let i = 0; i < volumeInputArray.length; i++) {
+            const { volumeUID, visibility, actorUID } = volumeInputArray[i];
+            const volumeActor = await createVolumeActor(volumeInputArray[i]);
+            if (visibility === false) {
+                volumeActor.setVisibility(false);
+            }
+            const uid = actorUID || volumeUID;
+            volumeActors.push({ uid, volumeActor });
+        }
+        this.addActors(volumeActors);
+        if (immediate) {
+            this.render();
+        }
+    }
+    removeVolumeActors(actorUIDs, immediate = false) {
+        this.removeActors(actorUIDs);
+        if (immediate) {
+            this.render();
+        }
+    }
+    async _isValidVolumeInputArray(volumeInputArray, FrameOfReferenceUID) {
+        const numVolumes = volumeInputArray.length;
+        for (let i = 1; i < numVolumes; i++) {
+            const volumeInput = volumeInputArray[i];
+            const imageVolume = await loadVolume(volumeInput.volumeUID);
+            if (!imageVolume) {
+                throw new Error(`imageVolume with uid: ${imageVolume.uid} does not exist`);
+            }
+            if (FrameOfReferenceUID !== imageVolume.metadata.FrameOfReferenceUID) {
+                throw new Error(`Volumes being added to viewport ${this.uid} do not share the same FrameOfReferenceUID. This is not yet supported`);
+            }
+        }
+        return true;
+    }
+    getIntensityFromWorld(point) {
+        const volumeActor = this.getDefaultActor().volumeActor;
+        const imageData = volumeActor.getMapper().getInputData();
+        return imageData.getScalarValueFromWorld(point);
+    }
+    getBounds() {
+        const renderer = this.getRenderer();
+        const bounds = renderer.computeVisiblePropBounds();
+        return bounds;
+    }
+    flip(flipDirection) {
+        super.flip(flipDirection);
+    }
+    resetCamera(resetPanZoomForViewPlane = false) {
+        return super.resetCamera(resetPanZoomForViewPlane);
+    }
+    setSlabThickness(slabThickness) {
+        this.setCamera({
+            slabThickness,
+        });
+    }
+    getSlabThickness() {
+        const { slabThickness } = this.getCamera();
+        return slabThickness;
+    }
+    getImageData() {
+        const actor = this.getDefaultActor();
+        if (!actor) {
+            return;
+        }
+        const { volumeActor } = actor;
+        const vtkImageData = volumeActor.getMapper().getInputData();
+        return {
+            dimensions: vtkImageData.getDimensions(),
+            spacing: vtkImageData.getSpacing(),
+            origin: vtkImageData.getOrigin(),
+            direction: vtkImageData.getDirection(),
+            scalarData: vtkImageData.getPointData().getScalars().getData(),
+            imageData: volumeActor.getMapper().getInputData(),
+            metadata: undefined,
+            scaling: undefined,
+        };
+    }
+    _setVolumeActors(volumeActorEntries) {
+        const renderer = this.getRenderer();
+        this.setActors(volumeActorEntries);
+        let slabThickness = null;
+        if (this.type === ViewportType.ORTHOGRAPHIC) {
+            volumeActorEntries.forEach((va) => {
+                if (va.slabThickness && va.slabThickness > slabThickness) {
+                    slabThickness = va.slabThickness;
+                }
+            });
+            this.resetCamera();
+            const activeCamera = renderer.getActiveCamera();
+            activeCamera.setSlabThickness(slabThickness);
+            activeCamera.setFreezeFocalPoint(true);
+        }
+        else {
+            renderer.resetCamera();
+            const activeCamera = renderer.getActiveCamera();
+            activeCamera.setFreezeFocalPoint(true);
+        }
+    }
+}
+export default VolumeViewport;
+//# sourceMappingURL=VolumeViewport.js.map

package/dist/esm/RenderingEngine/VolumeViewport.js.map

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package/dist/esm/RenderingEngine/getRenderingEngine.d.ts

@@ -0,0 +1,4 @@
+import type { IRenderingEngine } from './RenderingEngine';
+export declare function getRenderingEngine(uid: string): IRenderingEngine | undefined;
+export declare function getRenderingEngines(): IRenderingEngine[] | undefined;
+export default getRenderingEngine;

package/dist/esm/RenderingEngine/getRenderingEngine.js

@@ -0,0 +1,9 @@
+import renderingEngineCache from './renderingEngineCache';
+export function getRenderingEngine(uid) {
+    return renderingEngineCache.get(uid);
+}
+export function getRenderingEngines() {
+    return renderingEngineCache.getAll();
+}
+export default getRenderingEngine;
+//# sourceMappingURL=getRenderingEngine.js.map

package/dist/esm/RenderingEngine/getRenderingEngine.js.map

@@ -0,0 +1 @@
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package/dist/esm/RenderingEngine/helpers/addVolumesToViewports.d.ts

@@ -0,0 +1,3 @@
+import type { IVolumeInput, IRenderingEngine } from '../../types';
+declare function addVolumesToViewports(renderingEngine: IRenderingEngine, volumeInputs: Array<IVolumeInput>, viewportUIDs: Array<string>, immediateRender?: boolean): Promise<void>;
+export default addVolumesToViewports;

package/dist/esm/RenderingEngine/helpers/addVolumesToViewports.js

@@ -0,0 +1,20 @@
+import { VolumeViewport } from '../';
+async function addVolumesToViewports(renderingEngine, volumeInputs, viewportUIDs, immediateRender = false) {
+    viewportUIDs.forEach((viewportUID) => {
+        const viewport = renderingEngine.getViewport(viewportUID);
+        if (!viewport) {
+            throw new Error(`Viewport with UID ${viewportUID} does not exist`);
+        }
+        if (!(viewport instanceof VolumeViewport)) {
+            throw new Error('addVolumesToViewports only supports VolumeViewport');
+        }
+    });
+    const addVolumePromises = viewportUIDs.map(async (viewportUID) => {
+        const viewport = renderingEngine.getViewport(viewportUID);
+        await viewport.addVolumes(volumeInputs, immediateRender);
+    });
+    await Promise.all(addVolumePromises);
+    return;
+}
+export default addVolumesToViewports;
+//# sourceMappingURL=addVolumesToViewports.js.map

package/dist/esm/RenderingEngine/helpers/addVolumesToViewports.js.map

@@ -0,0 +1 @@
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package/dist/esm/RenderingEngine/helpers/cpuFallback/colors/colormap.d.ts

@@ -0,0 +1,3 @@
+import { CPUFallbackColormap, CPUFallbackColormapData } from '../../../../types';
+export declare function getColormapsList(): any[];
+export declare function getColormap(id: string, colormapData?: CPUFallbackColormapData): CPUFallbackColormap;

package/dist/esm/RenderingEngine/helpers/cpuFallback/colors/colormap.js

@@ -0,0 +1,195 @@
+import LookupTable from './lookupTable';
+import colormapsData from './colormaps';
+const COLOR_TRANSPARENT = [0, 0, 0, 0];
+function linspace(a, b, n) {
+    n = n === null ? 100 : n;
+    const increment = (b - a) / (n - 1);
+    const vector = [];
+    while (n-- > 0) {
+        vector.push(a);
+        a += increment;
+    }
+    vector[vector.length - 1] = b;
+    return vector;
+}
+function getRank(array, elem) {
+    let left = 0;
+    let right = array.length - 1;
+    while (left <= right) {
+        const mid = left + Math.floor((right - left) / 2);
+        const midElem = array[mid];
+        if (midElem === elem) {
+            return mid;
+        }
+        else if (elem < midElem) {
+            right = mid - 1;
+        }
+        else {
+            left = mid + 1;
+        }
+    }
+    return left;
+}
+function searchSorted(inputArray, values) {
+    let i;
+    const indexes = [];
+    const len = values.length;
+    inputArray.sort(function (a, b) {
+        return a - b;
+    });
+    for (i = 0; i < len; i++) {
+        indexes[i] = getRank(inputArray, values[i]);
+    }
+    return indexes;
+}
+function makeMappingArray(N, data, gamma) {
+    let i;
+    const x = [];
+    const y0 = [];
+    const y1 = [];
+    const lut = [];
+    gamma = gamma === null ? 1 : gamma;
+    for (i = 0; i < data.length; i++) {
+        const element = data[i];
+        x.push((N - 1) * element[0]);
+        y0.push(element[1]);
+        y1.push(element[1]);
+    }
+    const xLinSpace = linspace(0, 1, N);
+    for (i = 0; i < N; i++) {
+        xLinSpace[i] = (N - 1) * Math.pow(xLinSpace[i], gamma);
+    }
+    const xLinSpaceIndexes = searchSorted(x, xLinSpace);
+    for (i = 1; i < N - 1; i++) {
+        const index = xLinSpaceIndexes[i];
+        const colorPercent = (xLinSpace[i] - x[index - 1]) / (x[index] - x[index - 1]);
+        const colorDelta = y0[index] - y1[index - 1];
+        lut[i] = colorPercent * colorDelta + y1[index - 1];
+    }
+    lut[0] = y1[0];
+    lut[N - 1] = y0[data.length - 1];
+    return lut;
+}
+function createLinearSegmentedColormap(segmentedData, N, gamma) {
+    let i;
+    const lut = [];
+    N = N === null ? 256 : N;
+    gamma = gamma === null ? 1 : gamma;
+    const redLut = makeMappingArray(N, segmentedData.red, gamma);
+    const greenLut = makeMappingArray(N, segmentedData.green, gamma);
+    const blueLut = makeMappingArray(N, segmentedData.blue, gamma);
+    for (i = 0; i < N; i++) {
+        const red = Math.round(redLut[i] * 255);
+        const green = Math.round(greenLut[i] * 255);
+        const blue = Math.round(blueLut[i] * 255);
+        const rgba = [red, green, blue, 255];
+        lut.push(rgba);
+    }
+    return lut;
+}
+export function getColormapsList() {
+    const colormaps = [];
+    const keys = Object.keys(colormapsData);
+    keys.forEach(function (key) {
+        if (colormapsData.hasOwnProperty(key)) {
+            const colormap = colormapsData[key];
+            colormaps.push({
+                id: key,
+                name: colormap.name,
+            });
+        }
+    });
+    colormaps.sort(function (a, b) {
+        const aName = a.name.toLowerCase();
+        const bName = b.name.toLowerCase();
+        if (aName === bName) {
+            return 0;
+        }
+        return aName < bName ? -1 : 1;
+    });
+    return colormaps;
+}
+export function getColormap(id, colormapData) {
+    let colormap = colormapsData[id];
+    if (!colormap) {
+        colormap = colormapsData[id] = colormapData || {
+            name: '',
+            colors: [],
+        };
+    }
+    if (!colormap.colors && colormap.segmentedData) {
+        colormap.colors = createLinearSegmentedColormap(colormap.segmentedData, colormap.numColors, colormap.gamma);
+    }
+    const cpuFallbackColormap = {
+        getId() {
+            return id;
+        },
+        getColorSchemeName() {
+            return colormap.name;
+        },
+        setColorSchemeName(name) {
+            colormap.name = name;
+        },
+        getNumberOfColors() {
+            return colormap.colors.length;
+        },
+        setNumberOfColors(numColors) {
+            while (colormap.colors.length < numColors) {
+                colormap.colors.push(COLOR_TRANSPARENT);
+            }
+            colormap.colors.length = numColors;
+        },
+        getColor(index) {
+            if (this.isValidIndex(index)) {
+                return colormap.colors[index];
+            }
+            return COLOR_TRANSPARENT;
+        },
+        getColorRepeating(index) {
+            const numColors = colormap.colors.length;
+            index = numColors ? index % numColors : 0;
+            return this.getColor(index);
+        },
+        setColor(index, rgba) {
+            if (this.isValidIndex(index)) {
+                colormap.colors[index] = rgba;
+            }
+        },
+        addColor(rgba) {
+            colormap.colors.push(rgba);
+        },
+        insertColor(index, rgba) {
+            if (this.isValidIndex(index)) {
+                colormap.colors.splice(index, 1, rgba);
+            }
+        },
+        removeColor(index) {
+            if (this.isValidIndex(index)) {
+                colormap.colors.splice(index, 1);
+            }
+        },
+        clearColors() {
+            colormap.colors = [];
+        },
+        buildLookupTable(lut) {
+            if (!lut) {
+                return;
+            }
+            const numColors = colormap.colors.length;
+            lut.setNumberOfTableValues(numColors);
+            for (let i = 0; i < numColors; i++) {
+                lut.setTableValue(i, colormap.colors[i]);
+            }
+        },
+        createLookupTable() {
+            const lut = new LookupTable();
+            this.buildLookupTable(lut);
+            return lut;
+        },
+        isValidIndex(index) {
+            return index >= 0 && index < colormap.colors.length;
+        },
+    };
+    return cpuFallbackColormap;
+}
+//# sourceMappingURL=colormap.js.map

package/dist/esm/RenderingEngine/helpers/cpuFallback/colors/colormap.js.map

@@ -0,0 +1 @@
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package/dist/esm/RenderingEngine/helpers/cpuFallback/colors/colormaps.d.ts

@@ -0,0 +1,3 @@
+import { CPUFallbackColormapsData } from '../../../../types';
+declare const colormapsData: CPUFallbackColormapsData;
+export default colormapsData;