@cornerstonejs/adapters 3.0.0-beta.5 → 3.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/esm/adapters/Cornerstone/Angle.js +61 -74
- package/dist/esm/adapters/Cornerstone/ArrowAnnotate.js +76 -76
- package/dist/esm/adapters/Cornerstone/Bidirectional.js +130 -146
- package/dist/esm/adapters/Cornerstone/CircleRoi.js +96 -95
- package/dist/esm/adapters/Cornerstone/CobbAngle.js +66 -79
- package/dist/esm/adapters/Cornerstone/EllipticalRoi.js +152 -152
- package/dist/esm/adapters/Cornerstone/FreehandRoi.js +68 -69
- package/dist/esm/adapters/Cornerstone/Length.js +54 -63
- package/dist/esm/adapters/Cornerstone/MeasurementReport.js +221 -224
- package/dist/esm/adapters/Cornerstone/ParametricMap.js +88 -110
- package/dist/esm/adapters/Cornerstone/RectangleRoi.js +72 -78
- package/dist/esm/adapters/Cornerstone/Segmentation.js +7 -7
- package/dist/esm/adapters/Cornerstone/Segmentation_3X.js +113 -104
- package/dist/esm/adapters/Cornerstone/Segmentation_4X.js +434 -462
- package/dist/esm/adapters/Cornerstone/index.js +14 -14
- package/dist/esm/adapters/Cornerstone3D/Angle.d.ts +2 -5
- package/dist/esm/adapters/Cornerstone3D/Angle.js +89 -100
- package/dist/esm/adapters/Cornerstone3D/ArrowAnnotate.d.ts +5 -11
- package/dist/esm/adapters/Cornerstone3D/ArrowAnnotate.js +106 -118
- package/dist/esm/adapters/Cornerstone3D/BaseAdapter3D.d.ts +43 -0
- package/dist/esm/adapters/Cornerstone3D/BaseAdapter3D.js +92 -0
- package/dist/esm/adapters/Cornerstone3D/Bidirectional.d.ts +2 -5
- package/dist/esm/adapters/Cornerstone3D/Bidirectional.js +118 -133
- package/dist/esm/adapters/Cornerstone3D/CircleROI.d.ts +2 -7
- package/dist/esm/adapters/Cornerstone3D/CircleROI.js +85 -85
- package/dist/esm/adapters/Cornerstone3D/CobbAngle.d.ts +2 -5
- package/dist/esm/adapters/Cornerstone3D/CobbAngle.js +93 -104
- package/dist/esm/adapters/Cornerstone3D/CodingScheme.js +5 -5
- package/dist/esm/adapters/Cornerstone3D/EllipticalROI.d.ts +2 -7
- package/dist/esm/adapters/Cornerstone3D/EllipticalROI.js +148 -149
- package/dist/esm/adapters/Cornerstone3D/KeyImage.d.ts +24 -0
- package/dist/esm/adapters/Cornerstone3D/KeyImage.js +49 -0
- package/dist/esm/adapters/Cornerstone3D/Length.d.ts +2 -10
- package/dist/esm/adapters/Cornerstone3D/Length.js +83 -93
- package/dist/esm/adapters/Cornerstone3D/MeasurementReport.d.ts +23 -4
- package/dist/esm/adapters/Cornerstone3D/MeasurementReport.js +259 -240
- package/dist/esm/adapters/Cornerstone3D/ParametricMap/generateToolState.js +8 -4
- package/dist/esm/adapters/Cornerstone3D/PlanarFreehandROI.d.ts +3 -5
- package/dist/esm/adapters/Cornerstone3D/PlanarFreehandROI.js +99 -115
- package/dist/esm/adapters/Cornerstone3D/Probe.d.ts +4 -17
- package/dist/esm/adapters/Cornerstone3D/Probe.js +38 -79
- package/dist/esm/adapters/Cornerstone3D/RTStruct/RTSS.js +60 -52
- package/dist/esm/adapters/Cornerstone3D/RTStruct/index.js +3 -1
- package/dist/esm/adapters/Cornerstone3D/RTStruct/utilities/getPatientModule.js +5 -5
- package/dist/esm/adapters/Cornerstone3D/RTStruct/utilities/getReferencedFrameOfReferenceSequence.js +14 -10
- package/dist/esm/adapters/Cornerstone3D/RTStruct/utilities/getReferencedSeriesSequence.js +17 -11
- package/dist/esm/adapters/Cornerstone3D/RTStruct/utilities/getStructureSetModule.js +3 -1
- package/dist/esm/adapters/Cornerstone3D/RectangleROI.d.ts +2 -5
- package/dist/esm/adapters/Cornerstone3D/RectangleROI.js +73 -85
- package/dist/esm/adapters/Cornerstone3D/Segmentation/generateLabelMaps2DFrom3D.js +15 -13
- package/dist/esm/adapters/Cornerstone3D/Segmentation/generateSegmentation.js +15 -9
- package/dist/esm/adapters/Cornerstone3D/Segmentation/generateToolState.js +10 -10
- package/dist/esm/adapters/Cornerstone3D/Segmentation/labelmapImagesFromBuffer.js +134 -151
- package/dist/esm/adapters/Cornerstone3D/UltrasoundDirectional.d.ts +2 -5
- package/dist/esm/adapters/Cornerstone3D/UltrasoundDirectional.js +68 -84
- package/dist/esm/adapters/Cornerstone3D/index.d.ts +4 -0
- package/dist/esm/adapters/Cornerstone3D/index.js +21 -17
- package/dist/esm/adapters/VTKjs/Segmentation.js +66 -72
- package/dist/esm/adapters/VTKjs/index.js +2 -2
- package/dist/esm/adapters/helpers/checkIfPerpendicular.js +2 -2
- package/dist/esm/adapters/helpers/checkOrientation.js +8 -8
- package/dist/esm/adapters/helpers/codeMeaningEquals.js +2 -2
- package/dist/esm/adapters/helpers/compareArrays.js +4 -2
- package/dist/esm/adapters/helpers/downloadDICOMData.js +6 -4
- package/dist/esm/adapters/helpers/getDatasetsFromImages.js +20 -18
- package/dist/esm/adapters/helpers/graphicTypeEquals.js +2 -2
- package/dist/esm/adapters/helpers/toArray.js +1 -3
- package/dist/esm/adapters/index.d.ts +2 -0
- package/dist/esm/adapters/index.js +6 -5
- package/dist/esm/node_modules/@babel/runtime/helpers/esm/defineProperty.js +18 -0
- package/dist/esm/node_modules/@babel/runtime/helpers/esm/toPrimitive.js +14 -0
- package/dist/esm/node_modules/@babel/runtime/helpers/esm/toPropertyKey.js +9 -0
- package/dist/esm/node_modules/@babel/runtime/helpers/esm/typeof.js +11 -0
- package/package.json +4 -4
- package/dist/esm/_virtual/_rollupPluginBabelHelpers.js +0 -493
- package/dist/esm/adapters/Cornerstone3D/isValidCornerstoneTrackingIdentifier.js +0 -18
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import _defineProperty from '../../node_modules/@babel/runtime/helpers/esm/defineProperty.js';
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import { utilities } from 'dcmjs';
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import MeasurementReport from './MeasurementReport.js';
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import CORNERSTONE_4_TAG from './cornerstone4Tag.js';
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hasBoundingBox: true
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}
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function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
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function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
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const {
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Angle: TID300Angle
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} = utilities.TID300;
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const ANGLE = "Angle";
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class Angle {
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/**
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* Generate TID300 measurement data for a plane angle measurement - use a Angle, but label it as Angle
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*/
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static getMeasurementData(MeasurementGroup) {
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const {
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defaultState,
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NUMGroup,
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SCOORDGroup
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} = MeasurementReport.getSetupMeasurementData(MeasurementGroup);
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const state = _objectSpread(_objectSpread({}, defaultState), {}, {
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rAngle: NUMGroup.MeasuredValueSequence.NumericValue,
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toolType: Angle.toolType,
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handles: {
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start: {},
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middle: {},
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end: {},
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textBox: {
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hasMoved: false,
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movesIndependently: false,
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drawnIndependently: true,
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allowedOutsideImage: true,
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hasBoundingBox: true
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rAngle: rAngle,
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trackingIdentifierTextValue: trackingIdentifierTextValue,
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finding: finding,
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findingSites: findingSites || []
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};
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}
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}]);
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}();
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}
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});
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[state.handles.start.x, state.handles.start.y, state.handles.middle.x, state.handles.middle.y, state.handles.middle.x, state.handles.middle.y, state.handles.end.x, state.handles.end.y] = SCOORDGroup.GraphicData;
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return state;
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}
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static getTID300RepresentationArguments(tool) {
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const {
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handles,
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finding,
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findingSites
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} = tool;
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const point1 = handles.start;
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const point2 = handles.middle;
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const point3 = handles.middle;
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const point4 = handles.end;
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const rAngle = tool.rAngle;
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const trackingIdentifierTextValue = "cornerstoneTools@^4.0.0:Angle";
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return {
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point1,
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point2,
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point3,
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point4,
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trackingIdentifierTextValue,
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finding,
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findingSites: findingSites || []
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};
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}
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}
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Angle.toolType = ANGLE;
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Angle.utilityToolType = ANGLE;
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Angle.TID300Representation = TID300Angle;
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Angle.isValidCornerstoneTrackingIdentifier =
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Angle.isValidCornerstoneTrackingIdentifier = TrackingIdentifier => {
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}
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_TrackingIdentifier$s2 = _slicedToArray(_TrackingIdentifier$s, 2),
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cornerstone4Tag = _TrackingIdentifier$s2[0],
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toolType = _TrackingIdentifier$s2[1];
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const [cornerstone4Tag, toolType] = TrackingIdentifier.split(":");
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if (cornerstone4Tag !== CORNERSTONE_4_TAG) {
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return false;
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}
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import _defineProperty from '../../node_modules/@babel/runtime/helpers/esm/defineProperty.js';
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import { utilities } from 'dcmjs';
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import MeasurementReport from './MeasurementReport.js';
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import CORNERSTONE_4_TAG from './cornerstone4Tag.js';
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// use the actual endpoint.
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end: {
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x: GraphicData.length == 4 ? GraphicData[2] : GraphicData[0] + 20,
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y: GraphicData.length == 4 ? GraphicData[3] : GraphicData[1] + 20,
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}
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function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
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function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
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Point: TID300Point
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} = utilities.TID300;
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const ARROW_ANNOTATE = "ArrowAnnotate";
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const CORNERSTONEFREETEXT = "CORNERSTONEFREETEXT";
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class ArrowAnnotate {
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static getMeasurementData(MeasurementGroup) {
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} = MeasurementReport.getSetupMeasurementData(MeasurementGroup);
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const text = findingGroup.ConceptCodeSequence.CodeMeaning;
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} = SCOORDGroup;
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const state = _objectSpread(_objectSpread({}, defaultState), {}, {
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toolType: ArrowAnnotate.toolType,
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active: false,
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handles: {
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start: {
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// Use a generic offset if the stored data doesn't have the endpoint, otherwise
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end: {
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x: GraphicData.length == 4 ? GraphicData[2] : GraphicData[0] + 20,
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y: GraphicData.length == 4 ? GraphicData[3] : GraphicData[1] + 20,
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highlight: true,
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textBox: {
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movesIndependently: false,
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drawnIndependently: true,
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allowedOutsideImage: true,
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hasBoundingBox: true
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}
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},
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visible: true
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});
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return state;
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}
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static getTID300RepresentationArguments(tool) {
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points,
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ArrowAnnotate.toolType = ARROW_ANNOTATE;
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import { slicedToArray as _slicedToArray, createClass as _createClass, classCallCheck as _classCallCheck } from '../../_virtual/_rollupPluginBabelHelpers.js';
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var shortAxisNUMGroup = toArray(ContentSequence).find(function (group) {
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var shortAxisSCOORDGroup = toArray(shortAxisNUMGroup.ContentSequence).find(function (group) {
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var ReferencedSOPSequence = longAxisSCOORDGroup.ContentSequence.ReferencedSOPSequence;
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ReferencedFrameNumber = ReferencedSOPSequence.ReferencedFrameNumber;
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const {
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Bidirectional: TID300Bidirectional
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} = utilities.TID300;
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const BIDIRECTIONAL = "Bidirectional";
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const LONG_AXIS = "Long Axis";
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const SHORT_AXIS = "Short Axis";
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const FINDING = "121071";
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const FINDING_SITE = "G-C0E3";
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class Bidirectional {
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// TODO: this function is required for all Cornerstone Tool Adapters, since it is called by MeasurementReport.
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static getMeasurementData(MeasurementGroup) {
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const {
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ContentSequence
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} = MeasurementGroup;
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const findingGroup = toArray(ContentSequence).find(group => group.ConceptNameCodeSequence.CodeValue === FINDING);
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const findingSiteGroups = toArray(ContentSequence).filter(group => group.ConceptNameCodeSequence.CodeValue === FINDING_SITE);
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const longAxisNUMGroup = toArray(ContentSequence).find(group => group.ConceptNameCodeSequence.CodeMeaning === LONG_AXIS);
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const longAxisSCOORDGroup = toArray(longAxisNUMGroup.ContentSequence).find(group => group.ValueType === "SCOORD");
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const shortAxisNUMGroup = toArray(ContentSequence).find(group => group.ConceptNameCodeSequence.CodeMeaning === SHORT_AXIS);
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const shortAxisSCOORDGroup = toArray(shortAxisNUMGroup.ContentSequence).find(group => group.ValueType === "SCOORD");
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const {
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ReferencedSOPSequence
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} = longAxisSCOORDGroup.ContentSequence;
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const {
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ReferencedSOPInstanceUID,
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ReferencedFrameNumber
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} = ReferencedSOPSequence;
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},
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perpendicularStart: {
|
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|
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x: shortAxisSCOORDGroup.GraphicData[0],
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y: shortAxisSCOORDGroup.GraphicData[1],
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drawnIndependently: false,
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allowedOutsideImage: false,
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index: 2
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|
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},
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|
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perpendicularEnd: {
|
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|
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x: shortAxisSCOORDGroup.GraphicData[2],
|
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|
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y: shortAxisSCOORDGroup.GraphicData[3],
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|
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|
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drawnIndependently: false,
|
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|
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allowedOutsideImage: false,
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|
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active: false,
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|
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highlight: false,
|
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|
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index: 3
|
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|
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},
|
|
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|
-
textBox: {
|
|
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|
-
highlight: false,
|
|
98
|
-
hasMoved: true,
|
|
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|
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active: false,
|
|
100
|
-
movesIndependently: false,
|
|
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|
-
drawnIndependently: true,
|
|
102
|
-
allowedOutsideImage: true,
|
|
103
|
-
hasBoundingBox: true,
|
|
104
|
-
x: bottomRight.x + 10,
|
|
105
|
-
y: bottomRight.y + 10
|
|
106
|
-
}
|
|
37
|
+
const longestDiameter = String(longAxisNUMGroup.MeasuredValueSequence.NumericValue);
|
|
38
|
+
const shortestDiameter = String(shortAxisNUMGroup.MeasuredValueSequence.NumericValue);
|
|
39
|
+
const bottomRight = {
|
|
40
|
+
x: Math.max(longAxisSCOORDGroup.GraphicData[0], longAxisSCOORDGroup.GraphicData[2], shortAxisSCOORDGroup.GraphicData[0], shortAxisSCOORDGroup.GraphicData[2]),
|
|
41
|
+
y: Math.max(longAxisSCOORDGroup.GraphicData[1], longAxisSCOORDGroup.GraphicData[3], shortAxisSCOORDGroup.GraphicData[1], shortAxisSCOORDGroup.GraphicData[3])
|
|
42
|
+
};
|
|
43
|
+
const state = {
|
|
44
|
+
sopInstanceUid: ReferencedSOPInstanceUID,
|
|
45
|
+
frameIndex: ReferencedFrameNumber || 1,
|
|
46
|
+
toolType: Bidirectional.toolType,
|
|
47
|
+
active: false,
|
|
48
|
+
handles: {
|
|
49
|
+
start: {
|
|
50
|
+
x: longAxisSCOORDGroup.GraphicData[0],
|
|
51
|
+
y: longAxisSCOORDGroup.GraphicData[1],
|
|
52
|
+
drawnIndependently: false,
|
|
53
|
+
allowedOutsideImage: false,
|
|
54
|
+
active: false,
|
|
55
|
+
highlight: false,
|
|
56
|
+
index: 0
|
|
57
|
+
},
|
|
58
|
+
end: {
|
|
59
|
+
x: longAxisSCOORDGroup.GraphicData[2],
|
|
60
|
+
y: longAxisSCOORDGroup.GraphicData[3],
|
|
61
|
+
drawnIndependently: false,
|
|
62
|
+
allowedOutsideImage: false,
|
|
63
|
+
active: false,
|
|
64
|
+
highlight: false,
|
|
65
|
+
index: 1
|
|
107
66
|
},
|
|
108
|
-
|
|
109
|
-
|
|
110
|
-
|
|
111
|
-
|
|
112
|
-
|
|
113
|
-
|
|
114
|
-
|
|
115
|
-
|
|
116
|
-
return fsg.ConceptCodeSequence;
|
|
117
|
-
})
|
|
118
|
-
};
|
|
119
|
-
return state;
|
|
120
|
-
}
|
|
121
|
-
}, {
|
|
122
|
-
key: "getTID300RepresentationArguments",
|
|
123
|
-
value: function getTID300RepresentationArguments(tool) {
|
|
124
|
-
var _tool$handles = tool.handles,
|
|
125
|
-
start = _tool$handles.start,
|
|
126
|
-
end = _tool$handles.end,
|
|
127
|
-
perpendicularStart = _tool$handles.perpendicularStart,
|
|
128
|
-
perpendicularEnd = _tool$handles.perpendicularEnd;
|
|
129
|
-
var shortestDiameter = tool.shortestDiameter,
|
|
130
|
-
longestDiameter = tool.longestDiameter,
|
|
131
|
-
finding = tool.finding,
|
|
132
|
-
findingSites = tool.findingSites;
|
|
133
|
-
var trackingIdentifierTextValue = "cornerstoneTools@^4.0.0:Bidirectional";
|
|
134
|
-
return {
|
|
135
|
-
longAxis: {
|
|
136
|
-
point1: start,
|
|
137
|
-
point2: end
|
|
67
|
+
perpendicularStart: {
|
|
68
|
+
x: shortAxisSCOORDGroup.GraphicData[0],
|
|
69
|
+
y: shortAxisSCOORDGroup.GraphicData[1],
|
|
70
|
+
drawnIndependently: false,
|
|
71
|
+
allowedOutsideImage: false,
|
|
72
|
+
active: false,
|
|
73
|
+
highlight: false,
|
|
74
|
+
index: 2
|
|
138
75
|
},
|
|
139
|
-
|
|
140
|
-
|
|
141
|
-
|
|
76
|
+
perpendicularEnd: {
|
|
77
|
+
x: shortAxisSCOORDGroup.GraphicData[2],
|
|
78
|
+
y: shortAxisSCOORDGroup.GraphicData[3],
|
|
79
|
+
drawnIndependently: false,
|
|
80
|
+
allowedOutsideImage: false,
|
|
81
|
+
active: false,
|
|
82
|
+
highlight: false,
|
|
83
|
+
index: 3
|
|
142
84
|
},
|
|
143
|
-
|
|
144
|
-
|
|
145
|
-
|
|
146
|
-
|
|
147
|
-
|
|
148
|
-
|
|
149
|
-
|
|
150
|
-
|
|
151
|
-
|
|
85
|
+
textBox: {
|
|
86
|
+
highlight: false,
|
|
87
|
+
hasMoved: true,
|
|
88
|
+
active: false,
|
|
89
|
+
movesIndependently: false,
|
|
90
|
+
drawnIndependently: true,
|
|
91
|
+
allowedOutsideImage: true,
|
|
92
|
+
hasBoundingBox: true,
|
|
93
|
+
x: bottomRight.x + 10,
|
|
94
|
+
y: bottomRight.y + 10
|
|
95
|
+
}
|
|
96
|
+
},
|
|
97
|
+
invalidated: false,
|
|
98
|
+
isCreating: false,
|
|
99
|
+
longestDiameter,
|
|
100
|
+
shortestDiameter,
|
|
101
|
+
toolName: "Bidirectional",
|
|
102
|
+
visible: true,
|
|
103
|
+
finding: findingGroup ? findingGroup.ConceptCodeSequence : undefined,
|
|
104
|
+
findingSites: findingSiteGroups.map(fsg => fsg.ConceptCodeSequence)
|
|
105
|
+
};
|
|
106
|
+
return state;
|
|
107
|
+
}
|
|
108
|
+
static getTID300RepresentationArguments(tool) {
|
|
109
|
+
const {
|
|
110
|
+
start,
|
|
111
|
+
end,
|
|
112
|
+
perpendicularStart,
|
|
113
|
+
perpendicularEnd
|
|
114
|
+
} = tool.handles;
|
|
115
|
+
const {
|
|
116
|
+
shortestDiameter,
|
|
117
|
+
longestDiameter,
|
|
118
|
+
finding,
|
|
119
|
+
findingSites
|
|
120
|
+
} = tool;
|
|
121
|
+
const trackingIdentifierTextValue = "cornerstoneTools@^4.0.0:Bidirectional";
|
|
122
|
+
return {
|
|
123
|
+
longAxis: {
|
|
124
|
+
point1: start,
|
|
125
|
+
point2: end
|
|
126
|
+
},
|
|
127
|
+
shortAxis: {
|
|
128
|
+
point1: perpendicularStart,
|
|
129
|
+
point2: perpendicularEnd
|
|
130
|
+
},
|
|
131
|
+
longAxisLength: longestDiameter,
|
|
132
|
+
shortAxisLength: shortestDiameter,
|
|
133
|
+
trackingIdentifierTextValue,
|
|
134
|
+
finding: finding,
|
|
135
|
+
findingSites: findingSites || []
|
|
136
|
+
};
|
|
137
|
+
}
|
|
138
|
+
}
|
|
152
139
|
Bidirectional.toolType = BIDIRECTIONAL;
|
|
153
140
|
Bidirectional.utilityToolType = BIDIRECTIONAL;
|
|
154
141
|
Bidirectional.TID300Representation = TID300Bidirectional;
|
|
155
|
-
Bidirectional.isValidCornerstoneTrackingIdentifier =
|
|
142
|
+
Bidirectional.isValidCornerstoneTrackingIdentifier = TrackingIdentifier => {
|
|
156
143
|
if (!TrackingIdentifier.includes(":")) {
|
|
157
144
|
return false;
|
|
158
145
|
}
|
|
159
|
-
|
|
160
|
-
_TrackingIdentifier$s2 = _slicedToArray(_TrackingIdentifier$s, 2),
|
|
161
|
-
cornerstone4Tag = _TrackingIdentifier$s2[0],
|
|
162
|
-
toolType = _TrackingIdentifier$s2[1];
|
|
146
|
+
const [cornerstone4Tag, toolType] = TrackingIdentifier.split(":");
|
|
163
147
|
if (cornerstone4Tag !== CORNERSTONE_4_TAG) {
|
|
164
148
|
return false;
|
|
165
149
|
}
|