@copilotkit/pathfinder 1.1.0

package/README.md

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+# Pathfinder
+
+A self-hosted MCP server that provides semantic search over your documentation and code. Configure it with a YAML file, deploy with Docker, and give your AI coding agents instant access to your project's knowledge.
+
+## How It Works
+
+Pathfinder indexes your GitHub repositories — documentation (Markdown/MDX) and source code — into a PostgreSQL vector database using OpenAI embeddings. It exposes configurable search tools via the [Model Context Protocol (MCP)](https://modelcontextprotocol.io), so AI agents like Claude Code can search your docs and code semantically.
+
+## Quick Start
+
+1. **Clone and configure:**
+   ```bash
+   git clone https://github.com/CopilotKit/pathfinder.git
+   cd pathfinder
+   cp pathfinder.example.yaml pathfinder.yaml  # edit for your project
+   cp .env.example .env                        # add your OPENAI_API_KEY
+   ```
+
+2. **Start the server:**
+   ```bash
+   docker compose up
+   ```
+
+3. **Seed the index:**
+   ```bash
+   docker compose exec app npx tsx scripts/seed-index.ts
+   ```
+
+4. **Connect your AI agent:**
+   ```json
+   {
+     "mcpServers": {
+       "my-docs": { "url": "http://localhost:3001/mcp" }
+     }
+   }
+   ```
+
+## Configuration
+
+All configuration lives in `pathfinder.yaml`. See [pathfinder.example.yaml](pathfinder.example.yaml) for a minimal starting point.
+
+### Sources
+
+Each source defines what to index:
+
+```yaml
+sources:
+  - name: docs
+    type: markdown        # Built-in: markdown, code, raw-text
+    repo: https://github.com/your-org/your-repo.git
+    path: docs/
+    base_url: https://docs.your-project.com/
+    url_derivation:
+      strip_prefix: "docs/"
+      strip_suffix: ".md"
+    file_patterns: ["**/*.md"]
+    chunk:
+      target_tokens: 600
+      overlap_tokens: 50
+
+  - name: code
+    type: code
+    repo: https://github.com/your-org/your-repo.git
+    path: "."
+    file_patterns: ["**/*.ts", "**/*.py"]
+    exclude_patterns: ["**/test/**", "**/*.test.*"]
+    chunk:
+      target_lines: 80
+      overlap_lines: 10
+```
+
+### Tools
+
+Each tool maps to a source and defines the MCP tool interface:
+
+```yaml
+tools:
+  - name: search-docs
+    description: "Search documentation for relevant information."
+    source: docs
+    default_limit: 5
+    max_limit: 20
+    result_format: docs
+```
+
+### Collect Tools
+
+Collect tools let agents write structured data back to the server. Unlike search tools, they don't query anything — they validate the agent's input against a YAML-defined schema and store it as JSON in the database. Use them to gather signal from agents without writing any code.
+
+The first built-in use case is search feedback: agents report whether search results were helpful, what they tried, and what went wrong. This surfaces broken or misleading documentation quickly. But collect tools are generic — you can define any schema for any use case (e.g., broken link reporting, feature requests, error logging).
+
+```yaml
+tools:
+  - name: submit-feedback
+    type: collect
+    description: "Submit feedback on whether search results were helpful."
+    response: "Feedback recorded. Thank you."
+    schema:
+      tool_name:
+        type: string
+        description: "Which search tool was used"
+        required: true
+      rating:
+        type: enum
+        values: ["helpful", "not_helpful"]
+        description: "Whether the results were helpful"
+        required: true
+      comment:
+        type: string
+        description: "What worked or didn't work"
+        required: true
+```
+
+Each field in `schema` supports `type` (`string`, `number`, or `enum`), an optional `description` (shown to the agent), `required` (defaults to false), and `values` (required for `enum` fields). The validated input is written as JSONB to the `collected_data` table along with the tool name and a timestamp.
+
+### Bash Tool Options
+
+Bash tools expose source files as a read-only virtual filesystem that agents can explore with standard commands (`find`, `grep`, `cat`, `ls`, `head`). Several options control behavior:
+
+```yaml
+tools:
+  - name: explore-docs
+    type: bash
+    description: "Explore documentation files"
+    sources: [docs]
+    bash:
+      session_state: true       # Persistent CWD across commands (default: false)
+      grep_strategy: hybrid     # memory | vector | hybrid — enables qmd semantic search (default: memory, no qmd)
+      virtual_files: true       # Auto-generate INDEX.md, SEARCH_TIPS.md (default: false)
+```
+
+- **session_state**: When enabled, `cd` persists across commands within a session. Agents can run `cd /docs` in one tool call and then `ls` or `cat file.md` in the next without repeating the path.
+- **grep_strategy**: Controls whether the `qmd` semantic search command is available. `memory` uses pure in-memory regex only (no `qmd`). `vector` or `hybrid` enable the `qmd` command, which performs semantic search via embeddings plus text `ILIKE`. The `vector` and `hybrid` modes require an `embedding` config block.
+- **virtual_files**: Auto-generates `/INDEX.md` (file listing with descriptions) and `/SEARCH_TIPS.md` (usage guidance) at the root of the virtual filesystem.
+
+Agents can also run the `related` command inside bash tools to find semantically similar files across all mounted sources:
+
+```bash
+related /docs/concepts/coagents.mdx
+```
+
+This returns a ranked list of files from any source that are semantically related to the given file, useful for discovering cross-references between documentation and code.
+
+When `grep_strategy` is set to `vector` or `hybrid`, agents can use the `qmd` command for semantic search:
+
+```bash
+qmd "how do I configure authentication"
+```
+
+This performs a 2-pass search (semantic embeddings + text ILIKE) with dedup and filtering, and returns file:line:content results. Standard `grep` is never intercepted — it always works with standard flags as agents expect.
+
+**Note:** The virtual filesystem is read-only and shared across all MCP sessions for a given tool. Content refreshes on webhook or server restart.
+
+### Built-in Chunker Types
+
+| Type | Best For | Splits On |
+|------|----------|-----------|
+| `markdown` | .md, .mdx files | Headings (h2->h3->paragraph->line), preserves code blocks |
+| `code` | Source code files | Blank line boundaries, respects block comments/strings |
+| `raw-text` | Plain text, logs | Paragraph boundaries (double newline) |
+
+### Embedding
+
+```yaml
+embedding:
+  provider: openai
+  model: text-embedding-3-small
+  dimensions: 1536
+```
+
+### Indexing
+
+```yaml
+indexing:
+  auto_reindex: true         # Nightly full reindex
+  reindex_hour_utc: 3        # 3 AM UTC
+  stale_threshold_hours: 24
+```
+
+## Deploying to Production with Docker
+
+The simplest way to run in production:
+
+1. **Configure:**
+   ```bash
+   cp pathfinder.example.yaml pathfinder.yaml  # edit for your project
+   ```
+
+2. **Set environment variables** in `.env`:
+   ```
+   OPENAI_API_KEY=sk-...
+   POSTGRES_PASSWORD=your-secure-password
+   GITHUB_WEBHOOK_SECRET=your-webhook-secret
+   ```
+
+3. **Deploy:**
+   ```bash
+   docker compose -f docker-compose.prod.yaml up -d
+   ```
+
+4. **Verify:**
+   ```bash
+   curl http://localhost:3001/health | python3 -m json.tool
+   ```
+
+The health endpoint shows index status, chunk counts, and source states.
+
+The server automatically indexes on first boot and runs a nightly reindex at the configured hour.
+
+### GitHub Webhooks (optional)
+
+For real-time re-indexing on push:
+
+1. Add webhook config to `pathfinder.yaml`:
+   ```yaml
+   webhook:
+     repo_sources:
+       "your-org/your-repo": [docs, code]
+     path_triggers:
+       docs: ["docs/"]
+       code: []
+   ```
+
+2. Configure the webhook on GitHub:
+   - URL: `https://your-server/webhooks/github`
+   - Secret: same as `GITHUB_WEBHOOK_SECRET`
+   - Events: Just `push`
+
+## Deploying to Railway
+
+1. **Run setup:**
+   ```bash
+   ./scripts/setup.sh       # install deps, build Docker images
+   ./scripts/deploy.sh      # create Railway project, set vars, deploy
+   ```
+
+2. **Set custom domain** in Railway dashboard
+
+3. **Configure webhooks:**
+   ```bash
+   ./scripts/setup-webhooks.sh
+   ```
+
+See [OPERATIONS.md](OPERATIONS.md) for the full operations runbook.
+
+## Development
+
+```bash
+# Local setup
+./scripts/setup.sh
+
+# Start dev server (hot reload)
+docker compose up
+
+# Seed index
+docker compose exec app npx tsx scripts/seed-index.ts
+
+# Run unit tests
+npm test
+
+# Test search
+docker compose exec app npx tsx scripts/test-search.ts "your query"
+
+# Run integration tests
+npx tsx scripts/integration-test.ts
+
+# Run path filter tests
+npx tsx scripts/test-path-filter.ts
+```
+
+## Environment Variables
+
+| Variable | Required | Description |
+|----------|----------|-------------|
+| `OPENAI_API_KEY` | Yes | OpenAI API key for embeddings |
+| `DATABASE_URL` | Yes | PostgreSQL connection string |
+| `GITHUB_WEBHOOK_SECRET` | No | HMAC secret for webhook verification |
+| `GITHUB_TOKEN` | No | GitHub token for private repos |
+| `PATHFINDER_CONFIG` | No | Path to config file (default: `./pathfinder.yaml`) |
+| `PORT` | No | Server port (default: `3001`) |
+
+## License
+
+MIT — see [LICENSE](LICENSE)

package/dist/config.d.ts

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+import 'dotenv/config';
+import { type ServerConfig } from './types.js';
+export interface Config {
+    databaseUrl: string | undefined;
+    openaiApiKey: string;
+    githubToken: string;
+    githubWebhookSecret: string;
+    port: number;
+    nodeEnv: string;
+    logLevel: string;
+    cloneDir: string;
+}
+/**
+ * Check whether any search tools are configured (requires embeddings + indexing).
+ */
+export declare function hasSearchTools(): boolean;
+/**
+ * Check whether any collect tools are configured (requires database).
+ */
+export declare function hasCollectTools(): boolean;
+/**
+ * Check whether any bash tools use vector or hybrid grep (requires embeddings + database).
+ */
+export declare function hasBashSemanticSearch(): boolean;
+/**
+ * Get the set of source names that need indexing (only those referenced by search tools).
+ */
+export declare function getIndexableSourceNames(): Set<string>;
+export declare function getConfig(): Config;
+export declare const config: Config;
+export declare function getServerConfig(): ServerConfig;
+//# sourceMappingURL=config.d.ts.map

package/dist/config.d.ts.map

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package/dist/config.js

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+// Centralized configuration: env-var secrets + YAML server config.
+import 'dotenv/config';
+import { readFileSync, existsSync } from 'node:fs';
+import { resolve } from 'node:path';
+import { parse as parseYaml } from 'yaml';
+import { ServerConfigSchema } from './types.js';
+/**
+ * Check whether any search tools are configured (requires embeddings + indexing).
+ */
+export function hasSearchTools() {
+    return getServerConfig().tools.some(t => t.type === 'search');
+}
+/**
+ * Check whether any collect tools are configured (requires database).
+ */
+export function hasCollectTools() {
+    return getServerConfig().tools.some(t => t.type === 'collect');
+}
+/**
+ * Check whether any bash tools use vector or hybrid grep (requires embeddings + database).
+ */
+export function hasBashSemanticSearch() {
+    return getServerConfig().tools.some(t => t.type === 'bash' &&
+        (t.bash?.grep_strategy === 'vector' || t.bash?.grep_strategy === 'hybrid'));
+}
+/**
+ * Get the set of source names that need indexing (only those referenced by search tools).
+ */
+export function getIndexableSourceNames() {
+    const searchTools = getServerConfig().tools.filter(t => t.type === 'search');
+    return new Set(searchTools.map(t => t.source));
+}
+let cachedConfig = null;
+function parseConfig() {
+    const missing = [];
+    const needsRag = hasSearchTools();
+    const needsDb = needsRag || hasCollectTools() || hasBashSemanticSearch();
+    const databaseUrl = process.env.DATABASE_URL;
+    if (!databaseUrl && needsDb)
+        missing.push('DATABASE_URL');
+    const openaiApiKey = process.env.OPENAI_API_KEY;
+    if (!openaiApiKey && needsRag)
+        missing.push('OPENAI_API_KEY');
+    const githubWebhookSecret = process.env.GITHUB_WEBHOOK_SECRET ?? '';
+    if (missing.length > 0) {
+        throw new Error(`Missing required environment variables: ${missing.join(', ')}. ` +
+            `Set them before starting the server.`);
+    }
+    const port = parseInt(process.env.PORT || '3001', 10);
+    if (isNaN(port) || port < 0 || port > 65535) {
+        throw new Error(`Invalid PORT value: ${process.env.PORT}. Must be a number between 0 and 65535.`);
+    }
+    return {
+        databaseUrl,
+        openaiApiKey: openaiApiKey ?? '',
+        githubToken: process.env.GITHUB_TOKEN || '',
+        githubWebhookSecret: githubWebhookSecret,
+        port,
+        nodeEnv: process.env.NODE_ENV || 'development',
+        logLevel: process.env.LOG_LEVEL || 'info',
+        cloneDir: process.env.CLONE_DIR || '/tmp/mcp-repos',
+    };
+}
+export function getConfig() {
+    if (!cachedConfig) {
+        cachedConfig = parseConfig();
+    }
+    return cachedConfig;
+}
+export const config = new Proxy({}, {
+    get(_target, prop) {
+        return getConfig()[prop];
+    },
+});
+// ── YAML server configuration ─────────────────────────────────────────────────
+let cachedServerConfig = null;
+function resolveConfigPath() {
+    // Primary env var
+    const pathfinderEnv = process.env.PATHFINDER_CONFIG;
+    if (pathfinderEnv) {
+        const resolved = resolve(pathfinderEnv);
+        if (!existsSync(resolved)) {
+            throw new Error(`PATHFINDER_CONFIG points to ${resolved} but file does not exist.`);
+        }
+        return resolved;
+    }
+    // Deprecated env var
+    const mcpDocsEnv = process.env.MCP_DOCS_CONFIG;
+    if (mcpDocsEnv) {
+        console.warn('[config] MCP_DOCS_CONFIG is deprecated — use PATHFINDER_CONFIG instead.');
+        const resolved = resolve(mcpDocsEnv);
+        if (!existsSync(resolved)) {
+            throw new Error(`MCP_DOCS_CONFIG points to ${resolved} but file does not exist.`);
+        }
+        return resolved;
+    }
+    // Primary config file
+    const pathfinderPath = resolve(process.cwd(), 'pathfinder.yaml');
+    if (existsSync(pathfinderPath)) {
+        return pathfinderPath;
+    }
+    // Deprecated config file
+    const mcpDocsPath = resolve(process.cwd(), 'mcp-docs.yaml');
+    if (mcpDocsPath && existsSync(mcpDocsPath)) {
+        console.warn('[config] mcp-docs.yaml is deprecated — rename to pathfinder.yaml.');
+        return mcpDocsPath;
+    }
+    throw new Error('No pathfinder.yaml found. Set PATHFINDER_CONFIG env var or place pathfinder.yaml in the working directory.');
+}
+function loadServerConfig() {
+    const configPath = resolveConfigPath();
+    const raw = readFileSync(configPath, 'utf-8');
+    const parsed = parseYaml(raw);
+    // Default tool type to 'search' for backwards compatibility
+    if (Array.isArray(parsed?.tools)) {
+        for (const tool of parsed.tools) {
+            if (tool && typeof tool === 'object' && !('type' in tool)) {
+                console.warn(`[config] Tool "${tool.name}" has no type field — defaulting to "search". Add "type: search" explicitly to silence this warning.`);
+                tool.type = 'search';
+            }
+        }
+    }
+    const result = ServerConfigSchema.safeParse(parsed);
+    if (!result.success) {
+        const issues = result.error.issues
+            .map(i => `  - ${i.path.join('.')}: ${i.message}`)
+            .join('\n');
+        throw new Error(`Invalid config at ${configPath}:\n${issues}`);
+    }
+    // Validate source name uniqueness
+    const sourceNames = new Set(result.data.sources.map(s => s.name));
+    if (sourceNames.size !== result.data.sources.length) {
+        throw new Error('Duplicate source names found in sources configuration.');
+    }
+    // Validate tool name uniqueness
+    const toolNames = new Set(result.data.tools.map(t => t.name));
+    if (toolNames.size !== result.data.tools.length) {
+        throw new Error('Duplicate tool names found in tools configuration.');
+    }
+    // Cross-validate: every search tool's source must reference an existing source name
+    const searchTools = result.data.tools.filter(t => t.type === 'search');
+    for (const tool of searchTools) {
+        if (!sourceNames.has(tool.source)) {
+            throw new Error(`Tool "${tool.name}" references source "${tool.source}" which is not defined in sources.`);
+        }
+    }
+    // Cross-validate: webhook repo_sources and path_triggers must reference valid source names
+    if (result.data.webhook) {
+        const wh = result.data.webhook;
+        for (const [repo, sources] of Object.entries(wh.repo_sources)) {
+            for (const src of sources) {
+                if (!sourceNames.has(src)) {
+                    throw new Error(`Webhook repo_sources["${repo}"] references source "${src}" which is not defined in sources.`);
+                }
+            }
+        }
+        for (const triggerKey of Object.keys(wh.path_triggers)) {
+            if (!sourceNames.has(triggerKey)) {
+                throw new Error(`Webhook path_triggers key "${triggerKey}" does not match any defined source name.`);
+            }
+        }
+    }
+    // Validate local source paths exist
+    for (const source of result.data.sources) {
+        if (!source.repo) {
+            const resolved = resolve(source.path);
+            if (!existsSync(resolved)) {
+                throw new Error(`Source "${source.name}" references local path "${source.path}" (resolved to ${resolved}) which does not exist.`);
+            }
+        }
+    }
+    return result.data;
+}
+export function getServerConfig() {
+    if (!cachedServerConfig) {
+        cachedServerConfig = loadServerConfig();
+    }
+    return cachedServerConfig;
+}
+//# sourceMappingURL=config.js.map

package/dist/config.js.map

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package/dist/db/client.d.ts

@@ -0,0 +1,22 @@
+import pg from "pg";
+/**
+ * Returns a singleton pg Pool.
+ * For standard Postgres URLs, creates a pg.Pool on first call.
+ * For PGlite URLs (pglite://...), initializeSchema() must be called first
+ * or this will throw — PGlite requires async setup that getPool() cannot do.
+ */
+export declare function getPool(): pg.Pool;
+/**
+ * Runs migration (drop old tables) then creates the unified schema.
+ * Idempotent — all DDL uses IF NOT EXISTS / IF EXISTS.
+ * Also registers the pgvector type so vector columns are handled correctly.
+ *
+ * When DATABASE_URL starts with "pglite://", uses an in-process PGlite
+ * instance instead of connecting to an external PostgreSQL server.
+ */
+export declare function initializeSchema(): Promise<void>;
+/**
+ * Close the pool if it was initialized. Safe to call at any time.
+ */
+export declare function closePool(): Promise<void>;
+//# sourceMappingURL=client.d.ts.map

package/dist/db/client.d.ts.map

@@ -0,0 +1 @@
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package/dist/db/client.js

@@ -0,0 +1,134 @@
+import pg from "pg";
+import pgvector from "pgvector/pg";
+import { generateSchema, generateMigration } from "./schema.js";
+import { getConfig, getServerConfig } from "../config.js";
+let pool = null;
+/**
+ * Returns a singleton pg Pool.
+ * For standard Postgres URLs, creates a pg.Pool on first call.
+ * For PGlite URLs (pglite://...), initializeSchema() must be called first
+ * or this will throw — PGlite requires async setup that getPool() cannot do.
+ */
+export function getPool() {
+    if (pool)
+        return pool;
+    const databaseUrl = getConfig().databaseUrl;
+    if (!databaseUrl) {
+        throw new Error("DATABASE_URL is not set. Cannot create database pool.");
+    }
+    if (isPGliteUrl(databaseUrl)) {
+        throw new Error("PGlite pool not initialized. Call initializeSchema() first.");
+    }
+    pool = new pg.Pool({
+        connectionString: databaseUrl,
+    });
+    return pool;
+}
+function isPGliteUrl(url) {
+    return !!url && url.startsWith("pglite://");
+}
+function parsePGliteDataDir(url) {
+    return url.replace(/^pglite:\/\//, "");
+}
+async function initializePGlite() {
+    const databaseUrl = getConfig().databaseUrl;
+    if (!databaseUrl) {
+        throw new Error("DATABASE_URL is not set. Cannot initialize PGlite.");
+    }
+    const dataDir = parsePGliteDataDir(databaseUrl);
+    const dimensions = getServerConfig().embedding?.dimensions;
+    if (!dimensions)
+        throw new Error('embedding.dimensions is required for database schema initialization');
+    const { PGlite } = await import("@electric-sql/pglite");
+    const { vector } = await import("@electric-sql/pglite/vector");
+    const db = new PGlite({ dataDir, extensions: { vector } });
+    await db.waitReady;
+    // Run DDL in a transaction to avoid partial state on failure
+    await db.exec('BEGIN');
+    try {
+        await db.exec(generateMigration());
+        await db.exec(generateSchema(dimensions));
+        await db.exec('COMMIT');
+    }
+    catch (err) {
+        try {
+            await db.exec('ROLLBACK');
+        }
+        catch {
+            // ROLLBACK failed — original error is more useful
+        }
+        throw err;
+    }
+    // Build a wrapper that duck-types as pg.Pool.
+    // Supported pg.Pool surface: query(text, params?), connect() → {query, release}, end().
+    // Other pg.Pool methods (e.g. on(), totalCount, idleCount) are NOT implemented —
+    // the cast below is intentional since queries.ts only uses the supported subset.
+    const wrapper = {
+        query: (text, params) => db.query(text, params),
+        connect: async () => ({
+            query: (text, params) => db.query(text, params),
+            release: () => { },
+        }),
+        end: async () => db.close(),
+    };
+    pool = wrapper;
+}
+/**
+ * Runs migration (drop old tables) then creates the unified schema.
+ * Idempotent — all DDL uses IF NOT EXISTS / IF EXISTS.
+ * Also registers the pgvector type so vector columns are handled correctly.
+ *
+ * When DATABASE_URL starts with "pglite://", uses an in-process PGlite
+ * instance instead of connecting to an external PostgreSQL server.
+ */
+export async function initializeSchema() {
+    const databaseUrl = getConfig().databaseUrl;
+    if (!databaseUrl) {
+        throw new Error("DATABASE_URL is not set. Cannot initialize database schema.");
+    }
+    if (isPGliteUrl(databaseUrl)) {
+        await initializePGlite();
+        return;
+    }
+    const p = getPool();
+    const dimensions = getServerConfig().embedding?.dimensions;
+    if (!dimensions)
+        throw new Error('embedding.dimensions is required for database schema initialization');
+    // Ensure the vector extension exists before registering types
+    const setupClient = await p.connect();
+    try {
+        // Requires superuser or pg_extension_owner — works with the default Docker image
+        // but will fail on locked-down setups (e.g. RDS) without explicit grants
+        await setupClient.query('CREATE EXTENSION IF NOT EXISTS vector');
+        await pgvector.registerType(setupClient);
+    }
+    finally {
+        setupClient.release();
+    }
+    // Run migration + schema creation atomically
+    const migrationClient = await p.connect();
+    try {
+        await migrationClient.query('BEGIN');
+        await migrationClient.query(generateMigration());
+        await migrationClient.query(generateSchema(dimensions));
+        await migrationClient.query('COMMIT');
+    }
+    catch (err) {
+        await migrationClient.query('ROLLBACK');
+        throw err;
+    }
+    finally {
+        migrationClient.release();
+    }
+}
+/**
+ * Close the pool if it was initialized. Safe to call at any time.
+ */
+export async function closePool() {
+    if (pool) {
+        const p = pool;
+        pool = null;
+        await p.end();
+    }
+}
+//# sourceMappingURL=client.js.map

package/dist/db/client.js.map

@@ -0,0 +1 @@
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