@copilot-swarm/core 0.0.5 → 0.0.6

package/README.md

@@ -53,7 +53,7 @@ swarm -f feature-description.txt
 
 # Plan first, run later
 swarm plan "Redesign the notification system"
-swarm --plan doc/plan-latest.md
+swarm --plan .swarm/plans/plan-latest.md
 
 # Resume a failed/timed-out run
 swarm --resume
@@ -76,13 +76,13 @@ Two phases run in sequence:
 
 Output:
 
-- `doc/plan-<timestamp>.md` — Timestamped plan (never overwritten)
-- `doc/plan-latest.md` — Copy of the most recent plan
+- `.swarm/plans/plan-<timestamp>.md` — Timestamped plan (never overwritten)
+- `.swarm/plans/plan-latest.md` — Copy of the most recent plan
 
 Then feed the plan into the full pipeline:
 
 ```bash
-swarm --plan doc/plan-latest.md
+swarm --plan .swarm/plans/plan-latest.md
 ```
 
 ## Analyze Mode
@@ -93,7 +93,7 @@ Generate a comprehensive repository context document:
 swarm analyze
 ```
 
-Produces `doc/repo-analysis.md` — a structured analysis covering tech stack, architecture, key files, commands, patterns, and a step-by-step guide for implementing new features. The analysis goes through a dual-model review process:
+Produces `.swarm/analysis/repo-analysis.md` — a structured analysis covering tech stack, architecture, key files, commands, patterns, and a step-by-step guide for implementing new features. The analysis goes through a dual-model review process:
 
 1. **Architect** explores the repo and drafts the document
 2. **Senior engineer** reviews for accuracy (up to 3 iterations)
@@ -191,10 +191,10 @@ pipeline:
 | `ISSUE_BODY` | — | Task description (alternative to CLI prompt) |
 | `VERBOSE` | `false` | Enable verbose streaming output |
 | `AGENTS_DIR` | `.github/agents` | Directory for agent instruction files |
-| `DOC_DIR` | `doc` | Output directory for summaries |
-| `SESSION_TIMEOUT_MS` | `300000` | Timeout per agent session (ms) |
+| `SWARM_DIR` | `.swarm` | Root directory for all swarm output |
+| `SESSION_TIMEOUT_MS` | `1800000` | Timeout per agent session (ms) |
+| `MAX_AUTO_RESUME` | `3` | Auto-resume attempts on failure |
 | `MAX_RETRIES` | `2` | Retry attempts for failed agent responses |
-| `SUMMARY_FILE_NAME` | `swarm-summary.md` | Final summary filename |
 | `PRIMARY_MODEL` | `claude-opus-4-6-fast` | AI model for primary agents (overrides YAML) |
 | `REVIEW_MODEL` | `gpt-5.2-codex` | AI model for cross-model review (overrides YAML) |
 
@@ -234,14 +234,22 @@ Label an issue with `run-swarm` or `run-swarm-verbose` to trigger it.
 
 ## Output
 
-The orchestrator writes these files to the configured `DOC_DIR`:
+All output is organized under `.swarm/`:
 
-| File | Description |
-|---|---|
-| `<agent-name>.md` | Per-role summary with timestamp |
-| `engineer-stream-N.md` | Per-task engineering output |
-| `cross-model-review.md` | Cross-model review results (if applicable) |
-| `swarm-summary.md` | Final summary with all stream results |
+```
+.swarm/
+  plans/                    # Planning mode output
+    plan-latest.md
+    plan-<timestamp>.md
+  runs/                     # Per-run output (timestamped)
+    <runId>/
+      summary.md
+      roles/
+        pm.md, designer.md, engineer-stream-*.md, ...
+  analysis/                 # Repository analysis
+    repo-analysis.md
+  latest                    # Pointer to most recent run
+```
 
 ## Requirements
 

package/dist/analysis-engine.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"analysis-engine.d.ts","sourceRoot":"","sources":["../src/analysis-engine.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAC/C,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AAG1C,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AAoE1D,qBAAa,cAAc;IAIvB,OAAO,CAAC,QAAQ,CAAC,MAAM;IACvB,OAAO,CAAC,QAAQ,CAAC,QAAQ;IACzB,OAAO,CAAC,QAAQ,CAAC,MAAM;IALzB,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAiB;gBAGvB,MAAM,EAAE,WAAW,EACnB,QAAQ,EAAE,cAAc,EACxB,MAAM,EAAE,MAAM;IAK3B,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IAItB,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC;IAIrB,OAAO,IAAI,OAAO,CAAC,IAAI,CAAC;YAqBhB,sBAAsB;CAwDrC"}

package/dist/analysis-engine.js

@@ -1,6 +1,7 @@
 import * as fs from "node:fs/promises";
 import * as path from "node:path";
 import { msg } from "./messages.js";
+import { analysisDir } from "./paths.js";
 import { SessionManager } from "./session.js";
 import { responseContains } from "./utils.js";
 const MAX_REVIEW_ITERATIONS = 3;
@@ -90,9 +91,9 @@ export class AnalysisEngine {
             analysis = await this.runArchitectReviewLoop(this.pipeline.reviewModel, analysis);
         }
         // Save result
-        const docPath = path.join(this.config.repoRoot, this.config.docDir);
-        await fs.mkdir(docPath, { recursive: true });
-        const outputPath = path.join(docPath, "repo-analysis.md");
+        const dir = analysisDir(this.config);
+        await fs.mkdir(dir, { recursive: true });
+        const outputPath = path.join(dir, "repo-analysis.md");
         await fs.writeFile(outputPath, analysis);
         this.logger.info(msg.analyzeComplete);
         this.logger.info(msg.analyzeSaved(path.relative(this.config.repoRoot, outputPath)));

package/dist/analysis-engine.js.map

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package/dist/checkpoint.d.ts

@@ -6,6 +6,7 @@ export interface PipelineCheckpoint {
     designSpec: string;
     streamResults: string[];
     issueBody: string;
+    runId: string;
 }
 export declare function saveCheckpoint(config: SwarmConfig, checkpoint: PipelineCheckpoint): Promise<void>;
 export declare function loadCheckpoint(config: SwarmConfig): Promise<PipelineCheckpoint | null>;

package/dist/checkpoint.d.ts.map

@@ -1 +1 @@
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package/dist/checkpoint.js

@@ -1,14 +1,36 @@
 import * as fs from "node:fs/promises";
 import * as path from "node:path";
-const CHECKPOINT_FILE = ".swarm-checkpoint.json";
-function checkpointPath(config) {
-    return path.join(config.repoRoot, CHECKPOINT_FILE);
+import { latestPointerPath, runDir, swarmRoot } from "./paths.js";
+/** Resolve checkpoint path — inside the run dir for new runs, or from latest pointer on resume. */
+async function checkpointPath(config) {
+    if (config.resume) {
+        const latestRunId = await resolveLatestRunId(config);
+        if (latestRunId) {
+            return path.join(swarmRoot(config), "runs", latestRunId, "checkpoint.json");
+        }
+    }
+    return path.join(runDir(config), "checkpoint.json");
+}
+async function resolveLatestRunId(config) {
+    try {
+        return (await fs.readFile(latestPointerPath(config), "utf-8")).trim();
+    }
+    catch {
+        return null;
+    }
 }
 export async function saveCheckpoint(config, checkpoint) {
-    await fs.writeFile(checkpointPath(config), JSON.stringify(checkpoint, null, 2));
+    const dir = runDir(config);
+    await fs.mkdir(dir, { recursive: true });
+    const filePath = path.join(dir, "checkpoint.json");
+    await fs.writeFile(filePath, JSON.stringify(checkpoint, null, 2));
+    // Update latest pointer
+    const root = swarmRoot(config);
+    await fs.mkdir(root, { recursive: true });
+    await fs.writeFile(latestPointerPath(config), config.runId);
 }
 export async function loadCheckpoint(config) {
-    const filePath = checkpointPath(config);
+    const filePath = await checkpointPath(config);
     try {
         const content = await fs.readFile(filePath, "utf-8");
         return JSON.parse(content);
@@ -18,8 +40,9 @@ export async function loadCheckpoint(config) {
     }
 }
 export async function clearCheckpoint(config) {
+    const filePath = await checkpointPath(config);
     try {
-        await fs.unlink(checkpointPath(config));
+        await fs.unlink(filePath);
     }
     catch {
         // File may not exist

package/dist/checkpoint.js.map

@@ -1 +1 @@
-{"version":3,"file":"checkpoint.js","sourceRoot":"","sources":["../src/checkpoint.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,kBAAkB,CAAC;AACvC,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAGlC,MAAM,eAAe,GAAG,wBAAwB,CAAC;AAWjD,SAAS,cAAc,CAAC,MAAmB;IACzC,OAAO,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE,eAAe,CAAC,CAAC;AACrD,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,cAAc,CAAC,MAAmB,EAAE,UAA8B;IACtF,MAAM,EAAE,CAAC,SAAS,CAAC,cAAc,CAAC,MAAM,CAAC,EAAE,IAAI,CAAC,SAAS,CAAC,UAAU,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC;AAClF,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,cAAc,CAAC,MAAmB;IACtD,MAAM,QAAQ,GAAG,cAAc,CAAC,MAAM,CAAC,CAAC;IACxC,IAAI,CAAC;QACH,MAAM,OAAO,GAAG,MAAM,EAAE,CAAC,QAAQ,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;QACrD,OAAO,IAAI,CAAC,KAAK,CAAC,OAAO,CAAuB,CAAC;IACnD,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,eAAe,CAAC,MAAmB;IACvD,IAAI,CAAC;QACH,MAAM,EAAE,CAAC,MAAM,CAAC,cAAc,CAAC,MAAM,CAAC,CAAC,CAAC;IAC1C,CAAC;IAAC,MAAM,CAAC;QACP,qBAAqB;IACvB,CAAC;AACH,CAAC"}
+{"version":3,"file":"checkpoint.js","sourceRoot":"","sources":["../src/checkpoint.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,kBAAkB,CAAC;AACvC,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAElC,OAAO,EAAE,iBAAiB,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,YAAY,CAAC;AAYlE,mGAAmG;AACnG,KAAK,UAAU,cAAc,CAAC,MAAmB;IAC/C,IAAI,MAAM,CAAC,MAAM,EAAE,CAAC;QAClB,MAAM,WAAW,GAAG,MAAM,kBAAkB,CAAC,MAAM,CAAC,CAAC;QACrD,IAAI,WAAW,EAAE,CAAC;YAChB,OAAO,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,EAAE,MAAM,EAAE,WAAW,EAAE,iBAAiB,CAAC,CAAC;QAC9E,CAAC;IACH,CAAC;IACD,OAAO,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,iBAAiB,CAAC,CAAC;AACtD,CAAC;AAED,KAAK,UAAU,kBAAkB,CAAC,MAAmB;IACnD,IAAI,CAAC;QACH,OAAO,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,iBAAiB,CAAC,MAAM,CAAC,EAAE,OAAO,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;IACxE,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,cAAc,CAAC,MAAmB,EAAE,UAA8B;IACtF,MAAM,GAAG,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC;IAC3B,MAAM,EAAE,CAAC,KAAK,CAAC,GAAG,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IACzC,MAAM,QAAQ,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,iBAAiB,CAAC,CAAC;IACnD,MAAM,EAAE,CAAC,SAAS,CAAC,QAAQ,EAAE,IAAI,CAAC,SAAS,CAAC,UAAU,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC;IAElE,wBAAwB;IACxB,MAAM,IAAI,GAAG,SAAS,CAAC,MAAM,CAAC,CAAC;IAC/B,MAAM,EAAE,CAAC,KAAK,CAAC,IAAI,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IAC1C,MAAM,EAAE,CAAC,SAAS,CAAC,iBAAiB,CAAC,MAAM,CAAC,EAAE,MAAM,CAAC,KAAK,CAAC,CAAC;AAC9D,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,cAAc,CAAC,MAAmB;IACtD,MAAM,QAAQ,GAAG,MAAM,cAAc,CAAC,MAAM,CAAC,CAAC;IAC9C,IAAI,CAAC;QACH,MAAM,OAAO,GAAG,MAAM,EAAE,CAAC,QAAQ,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;QACrD,OAAO,IAAI,CAAC,KAAK,CAAC,OAAO,CAAuB,CAAC;IACnD,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,eAAe,CAAC,MAAmB;IACvD,MAAM,QAAQ,GAAG,MAAM,cAAc,CAAC,MAAM,CAAC,CAAC;IAC9C,IAAI,CAAC;QACH,MAAM,EAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC;IAC5B,CAAC;IAAC,MAAM,CAAC;QACP,qBAAqB;IACvB,CAAC;AACH,CAAC"}

package/dist/config.d.ts

@@ -11,11 +11,11 @@ export interface SwarmConfig {
     readonly resume: boolean;
     readonly issueBody: string;
     readonly agentsDir: string;
-    readonly docDir: string;
+    readonly swarmDir: string;
+    readonly runId: string;
     readonly sessionTimeoutMs: number;
     readonly maxRetries: number;
     readonly maxAutoResume: number;
-    readonly summaryFileName: string;
 }
 export declare function loadConfig(): SwarmConfig;
 //# sourceMappingURL=config.d.ts.map

package/dist/config.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"config.d.ts","sourceRoot":"","sources":["../src/config.ts"],"names":[],"mappings":"AAgCA,MAAM,MAAM,YAAY,GAAG,KAAK,GAAG,MAAM,GAAG,SAAS,CAAC;AA2HtD;;;;GAIG;AACH,MAAM,WAAW,WAAW;IAC1B,QAAQ,CAAC,OAAO,EAAE,YAAY,CAAC;IAC/B,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAC;IAC1B,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,MAAM,EAAE,OAAO,CAAC;IACzB,QAAQ,CAAC,SAAS,EAAE,MAAM,CAAC;IAC3B,QAAQ,CAAC,SAAS,EAAE,MAAM,CAAC;IAC3B,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAC;IACxB,QAAQ,CAAC,gBAAgB,EAAE,MAAM,CAAC;IAClC,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC;IAC5B,QAAQ,CAAC,aAAa,EAAE,MAAM,CAAC;IAC/B,QAAQ,CAAC,eAAe,EAAE,MAAM,CAAC;CAClC;AAED,wBAAgB,UAAU,IAAI,WAAW,CA+BxC"}
+{"version":3,"file":"config.d.ts","sourceRoot":"","sources":["../src/config.ts"],"names":[],"mappings":"AAgCA,MAAM,MAAM,YAAY,GAAG,KAAK,GAAG,MAAM,GAAG,SAAS,CAAC;AA2HtD;;;;GAIG;AACH,MAAM,WAAW,WAAW;IAC1B,QAAQ,CAAC,OAAO,EAAE,YAAY,CAAC;IAC/B,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAC;IAC1B,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,MAAM,EAAE,OAAO,CAAC;IACzB,QAAQ,CAAC,SAAS,EAAE,MAAM,CAAC;IAC3B,QAAQ,CAAC,SAAS,EAAE,MAAM,CAAC;IAC3B,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAC;IAC1B,QAAQ,CAAC,KAAK,EAAE,MAAM,CAAC;IACvB,QAAQ,CAAC,gBAAgB,EAAE,MAAM,CAAC;IAClC,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC;IAC5B,QAAQ,CAAC,aAAa,EAAE,MAAM,CAAC;CAChC;AAED,wBAAgB,UAAU,IAAI,WAAW,CAkCxC"}

package/dist/config.js

@@ -57,7 +57,7 @@ Examples:
   swarm plan -f requirements.md
   swarm run -v "Fix the login bug"
   swarm run --resume                   Resume a failed/timed-out run
-  swarm --plan doc/plan-latest.md
+  swarm --plan .swarm/plans/plan-latest.md
   swarm analyze
 
 Environment variables override defaults; CLI args override env vars.
@@ -144,6 +144,8 @@ export function loadConfig() {
         console.error(`Error: No prompt provided. Pass it as an argument, use --plan, or set ISSUE_BODY.\n\n${HELP_TEXT}`);
         process.exit(1);
     }
+    const swarmDir = readEnvString("SWARM_DIR", ".swarm");
+    const runId = new Date().toISOString().replace(/[:.]/g, "-");
     return {
         command: cli.command,
         repoRoot,
@@ -151,11 +153,11 @@ export function loadConfig() {
         resume: cli.resume,
         issueBody: issueBody ?? "",
         agentsDir: readEnvString("AGENTS_DIR", ".github/agents"),
-        docDir: readEnvString("DOC_DIR", "doc"),
+        swarmDir,
+        runId,
         sessionTimeoutMs: readEnvPositiveInt("SESSION_TIMEOUT_MS", 1_800_000),
         maxRetries: readEnvPositiveInt("MAX_RETRIES", 2),
         maxAutoResume: readEnvPositiveInt("MAX_AUTO_RESUME", 3),
-        summaryFileName: readEnvString("SUMMARY_FILE_NAME", "swarm-summary.md"),
     };
 }
 //# sourceMappingURL=config.js.map

package/dist/config.js.map

@@ -1 +1 @@
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package/dist/paths.d.ts

@@ -0,0 +1,14 @@
+import type { SwarmConfig } from "./config.js";
+/** Root .swarm directory. */
+export declare function swarmRoot(config: SwarmConfig): string;
+/** Per-run directory: .swarm/runs/<runId>/ */
+export declare function runDir(config: SwarmConfig): string;
+/** Role summaries inside a run: .swarm/runs/<runId>/roles/ */
+export declare function rolesDir(config: SwarmConfig): string;
+/** Plans directory: .swarm/plans/ */
+export declare function plansDir(config: SwarmConfig): string;
+/** Analysis directory: .swarm/analysis/ */
+export declare function analysisDir(config: SwarmConfig): string;
+/** Pointer to the latest run directory: .swarm/latest */
+export declare function latestPointerPath(config: SwarmConfig): string;
+//# sourceMappingURL=paths.d.ts.map

package/dist/paths.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"paths.d.ts","sourceRoot":"","sources":["../src/paths.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAE/C,6BAA6B;AAC7B,wBAAgB,SAAS,CAAC,MAAM,EAAE,WAAW,GAAG,MAAM,CAErD;AAED,8CAA8C;AAC9C,wBAAgB,MAAM,CAAC,MAAM,EAAE,WAAW,GAAG,MAAM,CAElD;AAED,8DAA8D;AAC9D,wBAAgB,QAAQ,CAAC,MAAM,EAAE,WAAW,GAAG,MAAM,CAEpD;AAED,qCAAqC;AACrC,wBAAgB,QAAQ,CAAC,MAAM,EAAE,WAAW,GAAG,MAAM,CAEpD;AAED,2CAA2C;AAC3C,wBAAgB,WAAW,CAAC,MAAM,EAAE,WAAW,GAAG,MAAM,CAEvD;AAED,yDAAyD;AACzD,wBAAgB,iBAAiB,CAAC,MAAM,EAAE,WAAW,GAAG,MAAM,CAE7D"}

package/dist/paths.js

@@ -0,0 +1,26 @@
+import * as path from "node:path";
+/** Root .swarm directory. */
+export function swarmRoot(config) {
+    return path.join(config.repoRoot, config.swarmDir);
+}
+/** Per-run directory: .swarm/runs/<runId>/ */
+export function runDir(config) {
+    return path.join(swarmRoot(config), "runs", config.runId);
+}
+/** Role summaries inside a run: .swarm/runs/<runId>/roles/ */
+export function rolesDir(config) {
+    return path.join(runDir(config), "roles");
+}
+/** Plans directory: .swarm/plans/ */
+export function plansDir(config) {
+    return path.join(swarmRoot(config), "plans");
+}
+/** Analysis directory: .swarm/analysis/ */
+export function analysisDir(config) {
+    return path.join(swarmRoot(config), "analysis");
+}
+/** Pointer to the latest run directory: .swarm/latest */
+export function latestPointerPath(config) {
+    return path.join(swarmRoot(config), "latest");
+}
+//# sourceMappingURL=paths.js.map

package/dist/paths.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"paths.js","sourceRoot":"","sources":["../src/paths.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAGlC,6BAA6B;AAC7B,MAAM,UAAU,SAAS,CAAC,MAAmB;IAC3C,OAAO,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE,MAAM,CAAC,QAAQ,CAAC,CAAC;AACrD,CAAC;AAED,8CAA8C;AAC9C,MAAM,UAAU,MAAM,CAAC,MAAmB;IACxC,OAAO,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,EAAE,MAAM,EAAE,MAAM,CAAC,KAAK,CAAC,CAAC;AAC5D,CAAC;AAED,8DAA8D;AAC9D,MAAM,UAAU,QAAQ,CAAC,MAAmB;IAC1C,OAAO,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,OAAO,CAAC,CAAC;AAC5C,CAAC;AAED,qCAAqC;AACrC,MAAM,UAAU,QAAQ,CAAC,MAAmB;IAC1C,OAAO,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,EAAE,OAAO,CAAC,CAAC;AAC/C,CAAC;AAED,2CAA2C;AAC3C,MAAM,UAAU,WAAW,CAAC,MAAmB;IAC7C,OAAO,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,EAAE,UAAU,CAAC,CAAC;AAClD,CAAC;AAED,yDAAyD;AACzD,MAAM,UAAU,iBAAiB,CAAC,MAAmB;IACnD,OAAO,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,EAAE,QAAQ,CAAC,CAAC;AAChD,CAAC"}

package/dist/pipeline-engine.d.ts

@@ -6,6 +6,7 @@ export declare class PipelineEngine {
     private readonly pipeline;
     private readonly logger;
     private readonly sessions;
+    private effectiveConfig;
     constructor(config: SwarmConfig, pipeline: PipelineConfig, logger: Logger);
     start(): Promise<void>;
     stop(): Promise<void>;

package/dist/pipeline-engine.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"pipeline-engine.d.ts","sourceRoot":"","sources":["../src/pipeline-engine.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAC/C,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AAE1C,OAAO,KAAK,EAKV,cAAc,EAGf,MAAM,qBAAqB,CAAC;AAY7B,qBAAa,cAAc;IAIvB,OAAO,CAAC,QAAQ,CAAC,MAAM;IACvB,OAAO,CAAC,QAAQ,CAAC,QAAQ;IACzB,OAAO,CAAC,QAAQ,CAAC,MAAM;IALzB,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAiB;gBAGvB,MAAM,EAAE,WAAW,EACnB,QAAQ,EAAE,cAAc,EACxB,MAAM,EAAE,MAAM;IAK3B,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IAItB,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC;IAIrB,OAAO,IAAI,OAAO,CAAC,IAAI,CAAC;YA6EhB,WAAW;YAiBX,gBAAgB;YAoBhB,aAAa;YA6Eb,gBAAgB;YAiHhB,uBAAuB;YAgDvB,aAAa;CAwB5B"}
+{"version":3,"file":"pipeline-engine.d.ts","sourceRoot":"","sources":["../src/pipeline-engine.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAC/C,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AAG1C,OAAO,KAAK,EAKV,cAAc,EAGf,MAAM,qBAAqB,CAAC;AAY7B,qBAAa,cAAc;IAKvB,OAAO,CAAC,QAAQ,CAAC,MAAM;IACvB,OAAO,CAAC,QAAQ,CAAC,QAAQ;IACzB,OAAO,CAAC,QAAQ,CAAC,MAAM;IANzB,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAiB;IAC1C,OAAO,CAAC,eAAe,CAAc;gBAGlB,MAAM,EAAE,WAAW,EACnB,QAAQ,EAAE,cAAc,EACxB,MAAM,EAAE,MAAM;IAM3B,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IAItB,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC;IAIrB,OAAO,IAAI,OAAO,CAAC,IAAI,CAAC;YAuFhB,WAAW;YAiBX,gBAAgB;YAoBhB,aAAa;YA6Eb,gBAAgB;YAmHhB,uBAAuB;YAgDvB,aAAa;CAwB5B"}

package/dist/pipeline-engine.js

@@ -2,6 +2,7 @@ import * as fs from "node:fs/promises";
 import * as path from "node:path";
 import { clearCheckpoint, loadCheckpoint, saveCheckpoint } from "./checkpoint.js";
 import { msg } from "./messages.js";
+import { latestPointerPath, runDir, swarmRoot } from "./paths.js";
 import { SessionManager } from "./session.js";
 import { hasFrontendWork, isFrontendTask, parseJsonArray, responseContains, writeRoleSummary } from "./utils.js";
 export class PipelineEngine {
@@ -9,10 +10,12 @@ export class PipelineEngine {
     pipeline;
     logger;
     sessions;
+    effectiveConfig;
     constructor(config, pipeline, logger) {
         this.config = config;
         this.pipeline = pipeline;
         this.logger = logger;
+        this.effectiveConfig = config;
         this.sessions = new SessionManager(config, pipeline, logger);
     }
     async start() {
@@ -29,6 +32,10 @@ export class PipelineEngine {
         if (this.config.resume) {
             const checkpoint = await loadCheckpoint(this.config);
             if (checkpoint) {
+                // Use the same runId so files go to the same run directory
+                if (checkpoint.runId) {
+                    this.effectiveConfig = { ...this.config, runId: checkpoint.runId };
+                }
                 ctx = {
                     spec: checkpoint.spec,
                     tasks: checkpoint.tasks,
@@ -66,13 +73,14 @@ export class PipelineEngine {
                     break;
             }
             completedPhases.add(phaseKey);
-            await saveCheckpoint(this.config, {
+            await saveCheckpoint(this.effectiveConfig, {
                 completedPhases: [...completedPhases],
                 spec: ctx.spec,
                 tasks: ctx.tasks,
                 designSpec: ctx.designSpec,
                 streamResults: ctx.streamResults,
-                issueBody: this.config.issueBody,
+                issueBody: this.effectiveConfig.issueBody,
+                runId: this.effectiveConfig.runId,
             });
             this.logger.info(msg.checkpointSaved(phase.phase));
         }
@@ -81,11 +89,15 @@ export class PipelineEngine {
         const timestamp = new Date().toISOString();
         const summary = `# Swarm Run Summary\n\n**Timestamp:** ${timestamp}\n**Tasks:** ${ctx.tasks.length}\n\n` +
             `${ctx.streamResults.map((r, i) => `## Stream ${i + 1}\n\n${r}`).join("\n\n---\n\n")}\n`;
-        const docPath = path.join(this.config.repoRoot, this.config.docDir);
-        await fs.mkdir(docPath, { recursive: true });
-        await fs.writeFile(path.join(docPath, this.config.summaryFileName), summary);
+        const dir = runDir(this.effectiveConfig);
+        await fs.mkdir(dir, { recursive: true });
+        await fs.writeFile(path.join(dir, "summary.md"), summary);
+        // Update latest pointer
+        const root = swarmRoot(this.effectiveConfig);
+        await fs.mkdir(root, { recursive: true });
+        await fs.writeFile(latestPointerPath(this.effectiveConfig), this.effectiveConfig.runId);
         // Clean up checkpoint on successful completion
-        await clearCheckpoint(this.config);
+        await clearCheckpoint(this.effectiveConfig);
     }
     // --- SPEC PHASE ---
     async executeSpec(phase) {
@@ -96,7 +108,7 @@ export class PipelineEngine {
             this.logger.info(msg.reviewPhase(review.agent));
             spec = await this.runReviewLoop(review, spec, phase.agent, (content) => `Review this specification:\n${content}`);
         }
-        await writeRoleSummary(this.config, phase.agent, `## Final Specification\n\n${spec}`);
+        await writeRoleSummary(this.effectiveConfig, phase.agent, `## Final Specification\n\n${spec}`);
         return spec;
     }
     // --- DECOMPOSE PHASE ---
@@ -108,7 +120,7 @@ export class PipelineEngine {
         const raw = await this.sessions.callIsolated(phase.agent, prompt);
         const tasks = parseJsonArray(raw);
         this.logger.info(msg.tasksResult(tasks));
-        await writeRoleSummary(this.config, `${phase.agent}-tasks`, `## Decomposed Tasks\n\n${tasks.map((t, i) => `${i + 1}. ${t}`).join("\n")}`);
+        await writeRoleSummary(this.effectiveConfig, `${phase.agent}-tasks`, `## Decomposed Tasks\n\n${tasks.map((t, i) => `${i + 1}. ${t}`).join("\n")}`);
         return tasks;
     }
     // --- DESIGN PHASE ---
@@ -151,7 +163,7 @@ export class PipelineEngine {
                     }
                 }
             }
-            await writeRoleSummary(this.config, phase.agent, design);
+            await writeRoleSummary(this.effectiveConfig, phase.agent, design);
             return design;
         }
         finally {
@@ -208,16 +220,17 @@ export class PipelineEngine {
                         code = await this.sessions.send(session, `QA Report:\n${testReport}\n\nFix all reported issues.`, `${phase.agent} (${label}) is fixing defects…`);
                     }
                 }
-                await writeRoleSummary(this.config, `engineer-stream-${idx + 1}`, code);
+                await writeRoleSummary(this.effectiveConfig, `engineer-stream-${idx + 1}`, code);
                 // Save intermediate progress so completed streams survive a crash
                 results[idx] = code;
-                await saveCheckpoint(this.config, {
+                await saveCheckpoint(this.effectiveConfig, {
                     completedPhases: [],
                     spec: ctx.spec,
                     tasks: ctx.tasks,
                     designSpec: ctx.designSpec,
                     streamResults: results,
-                    issueBody: this.config.issueBody,
+                    issueBody: this.effectiveConfig.issueBody,
+                    runId: this.effectiveConfig.runId,
                 });
                 return code;
             }
@@ -231,13 +244,14 @@ export class PipelineEngine {
             if (failures.length > 0) {
                 this.logger.warn(msg.partialStreamFailure(failures.length, settled.length));
                 // Save partial results before re-throwing so --resume can pick up completed streams
-                await saveCheckpoint(this.config, {
+                await saveCheckpoint(this.effectiveConfig, {
                     completedPhases: [],
                     spec: ctx.spec,
                     tasks: ctx.tasks,
                     designSpec: ctx.designSpec,
                     streamResults: results,
-                    issueBody: this.config.issueBody,
+                    issueBody: this.effectiveConfig.issueBody,
+                    runId: this.effectiveConfig.runId,
                 });
                 throw new Error(`${failures.length}/${settled.length} streams failed. Use --resume to retry failed streams.`);
             }
@@ -274,7 +288,7 @@ export class PipelineEngine {
             }
             return current;
         }));
-        await writeRoleSummary(this.config, "cross-model-review", reviewed.map((r, i) => `## Stream ${i + 1}\n\n${r}`).join("\n\n---\n\n"));
+        await writeRoleSummary(this.effectiveConfig, "cross-model-review", reviewed.map((r, i) => `## Stream ${i + 1}\n\n${r}`).join("\n\n---\n\n"));
         return reviewed;
     }
     // --- GENERIC REVIEW LOOP ---

package/dist/pipeline-engine.js.map

@@ -1 +1 @@
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package/dist/planning-engine.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"planning-engine.d.ts","sourceRoot":"","sources":["../src/planning-engine.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAE/C,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AAE1C,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AAuC1D,qBAAa,cAAc;IAIvB,OAAO,CAAC,QAAQ,CAAC,MAAM;IAEvB,OAAO,CAAC,QAAQ,CAAC,MAAM;IALzB,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAiB;gBAGvB,MAAM,EAAE,WAAW,EACpC,QAAQ,EAAE,cAAc,EACP,MAAM,EAAE,MAAM;IAK3B,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IAItB,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC;IAIrB,OAAO,IAAI,OAAO,CAAC,IAAI,CAAC;YAgChB,mBAAmB;YAuDnB,eAAe;CAmB9B"}
+{"version":3,"file":"planning-engine.d.ts","sourceRoot":"","sources":["../src/planning-engine.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAE/C,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AAG1C,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AAuC1D,qBAAa,cAAc;IAIvB,OAAO,CAAC,QAAQ,CAAC,MAAM;IAEvB,OAAO,CAAC,QAAQ,CAAC,MAAM;IALzB,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAiB;gBAGvB,MAAM,EAAE,WAAW,EACpC,QAAQ,EAAE,cAAc,EACP,MAAM,EAAE,MAAM;IAK3B,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IAItB,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC;IAIrB,OAAO,IAAI,OAAO,CAAC,IAAI,CAAC;YAgChB,mBAAmB;YAuDnB,eAAe;CAmB9B"}

package/dist/planning-engine.js

@@ -3,6 +3,7 @@ import * as path from "node:path";
 import * as readline from "node:readline/promises";
 import { ResponseKeyword } from "./constants.js";
 import { msg } from "./messages.js";
+import { plansDir } from "./paths.js";
 import { SessionManager } from "./session.js";
 import { responseContains } from "./utils.js";
 const MAX_CLARIFICATION_ROUNDS = 10;
@@ -65,10 +66,10 @@ export class PlanningEngine {
             `## Original Request\n\n${this.config.issueBody}\n\n` +
             `## Refined Requirements\n\n${spec}\n\n` +
             `## Technical Analysis\n\n${analysis}\n`;
-        const docPath = path.join(this.config.repoRoot, this.config.docDir);
-        await fs.mkdir(docPath, { recursive: true });
-        const timestampedPath = path.join(docPath, `plan-${fileTimestamp}.md`);
-        const latestPath = path.join(docPath, "plan-latest.md");
+        const dir = plansDir(this.config);
+        await fs.mkdir(dir, { recursive: true });
+        const timestampedPath = path.join(dir, `plan-${fileTimestamp}.md`);
+        const latestPath = path.join(dir, "plan-latest.md");
         await fs.writeFile(timestampedPath, plan);
         await fs.copyFile(timestampedPath, latestPath);
         this.logger.info(msg.planningComplete);

package/dist/planning-engine.js.map

@@ -1 +1 @@
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package/dist/utils.d.ts

@@ -1,7 +1,7 @@
 import type { SwarmConfig } from "./config.js";
 /** Extract a JSON array from a response that may contain surrounding prose. */
 export declare function parseJsonArray(raw: string): string[];
-/** Write a timestamped role summary to the doc directory. */
+/** Write a timestamped role summary to the run's roles directory. */
 export declare function writeRoleSummary(config: SwarmConfig, role: string, content: string): Promise<void>;
 /** Check whether any task in the list involves frontend work. */
 export declare function hasFrontendWork(tasks: readonly string[]): boolean;

package/dist/utils.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"utils.d.ts","sourceRoot":"","sources":["../src/utils.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAG/C,+EAA+E;AAC/E,wBAAgB,cAAc,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,EAAE,CAWpD;AAED,6DAA6D;AAC7D,wBAAsB,gBAAgB,CAAC,MAAM,EAAE,WAAW,EAAE,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAMxG;AAED,iEAAiE;AACjE,wBAAgB,eAAe,CAAC,KAAK,EAAE,SAAS,MAAM,EAAE,GAAG,OAAO,CAKjE;AAED,uDAAuD;AACvD,wBAAgB,cAAc,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAEpD;AAED,8EAA8E;AAC9E,wBAAgB,gBAAgB,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,CAE3E"}
+{"version":3,"file":"utils.d.ts","sourceRoot":"","sources":["../src/utils.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAI/C,+EAA+E;AAC/E,wBAAgB,cAAc,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,EAAE,CAWpD;AAED,qEAAqE;AACrE,wBAAsB,gBAAgB,CAAC,MAAM,EAAE,WAAW,EAAE,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAMxG;AAED,iEAAiE;AACjE,wBAAgB,eAAe,CAAC,KAAK,EAAE,SAAS,MAAM,EAAE,GAAG,OAAO,CAKjE;AAED,uDAAuD;AACvD,wBAAgB,cAAc,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAEpD;AAED,8EAA8E;AAC9E,wBAAgB,gBAAgB,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,CAE3E"}

package/dist/utils.js

@@ -1,6 +1,7 @@
 import * as fs from "node:fs/promises";
 import * as path from "node:path";
 import { FRONTEND_KEYWORDS, FRONTEND_MARKER } from "./constants.js";
+import { rolesDir } from "./paths.js";
 /** Extract a JSON array from a response that may contain surrounding prose. */
 export function parseJsonArray(raw) {
     const start = raw.indexOf("[");
@@ -14,13 +15,13 @@ export function parseJsonArray(raw) {
     }
     return parsed;
 }
-/** Write a timestamped role summary to the doc directory. */
+/** Write a timestamped role summary to the run's roles directory. */
 export async function writeRoleSummary(config, role, content) {
-    const docPath = path.join(config.repoRoot, config.docDir);
+    const dir = rolesDir(config);
     const timestamp = new Date().toISOString();
     const summary = `# ${role} Summary\n\n**Timestamp:** ${timestamp}\n\n${content}\n`;
-    await fs.mkdir(docPath, { recursive: true });
-    await fs.writeFile(path.join(docPath, `${role}.md`), summary);
+    await fs.mkdir(dir, { recursive: true });
+    await fs.writeFile(path.join(dir, `${role}.md`), summary);
 }
 /** Check whether any task in the list involves frontend work. */
 export function hasFrontendWork(tasks) {

package/dist/utils.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@copilot-swarm/core",
-  "version": "0.0.5",
+  "version": "0.0.6",
   "description": "Multi-agent orchestrator for GitHub Copilot — coordinates PM, designer, engineer, reviewer, and tester agents through a declarative pipeline",
   "license": "MIT",
   "type": "module",