@comunica/actor-query-source-identify-hypermedia-sparql 5.1.0 → 5.1.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (3) hide show
  1. package/lib/QuerySourceSparql.js +0 -4
  2. package/lib/QuerySourceSparql.js.map +1 -1
  3. package/package.json +2 -2
package/lib/QuerySourceSparql.js CHANGED
@@ -157,7 +157,6 @@ class QuerySourceSparql {
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  this.lastSourceContext = this.context.merge(context);
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  const query = context.get(context_entries_1.KeysInitQuery.queryString) ?? await this.operationToQuery(operation);
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  const rawStream = await this.endpointFetcher.fetchTriples(this.url, query);
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- this.lastSourceContext = undefined;
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  return rawStream;
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  })(), { autoStart: false, maxBufferSize: Number.POSITIVE_INFINITY });
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  this.attachMetadata(quads, context, Promise.resolve(operation.input));
@@ -172,14 +171,12 @@ class QuerySourceSparql {
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  this.lastSourceContext = this.context.merge(context);
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  const query = context.get(context_entries_1.KeysInitQuery.queryString) ?? await this.operationToQuery(operation);
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  const promise = this.endpointFetcher.fetchAsk(this.url, query);
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- this.lastSourceContext = undefined;
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  return promise;
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  }
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  async queryVoid(operation, context) {
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  this.lastSourceContext = this.context.merge(context);
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  const query = context.get(context_entries_1.KeysInitQuery.queryString) ?? await this.operationToQuery(operation);
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  const promise = this.endpointFetcher.fetchUpdate(this.url, query);
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- this.lastSourceContext = undefined;
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  return promise;
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  }
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  attachMetadata(target, context, operationPromise) {
@@ -459,7 +456,6 @@ class QuerySourceSparql {
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  const undefVariablesSet = new Set(undefVariables.map(v => v.value));
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  this.lastSourceContext = this.context.merge(context);
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  const rawStream = await this.endpointFetcher.fetchBindings(endpoint, query);
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- this.lastSourceContext = undefined;
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  const wrapped = (0, asynciterator_1.wrap)(rawStream, { autoStart: false, maxBufferSize: Number.POSITIVE_INFINITY });
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  return wrapped.map((rawData) => {
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  const bindings = variables.map((variable) => {
package/lib/QuerySourceSparql.js.map CHANGED
@@ -1 +1 @@
1
- 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type { MediatorHttp } from '@comunica/bus-http';\nimport type { MediatorQuerySerialize } from '@comunica/bus-query-serialize';\nimport { KeysInitQuery } from '@comunica/context-entries';\nimport { Actor } from '@comunica/core';\nimport type {\n Bindings,\n BindingsStream,\n ComunicaDataFactory,\n FragmentSelectorShape,\n IActionContext,\n IDataset,\n IQueryBindingsOptions,\n IQuerySource,\n MetadataBindings,\n MetadataVariable,\n QueryResultCardinality,\n} from '@comunica/types';\nimport type { AlgebraFactory } from '@comunica/utils-algebra';\nimport { Algebra, algebraUtils, isKnownOperation } from '@comunica/utils-algebra';\nimport type { BindingsFactory } from '@comunica/utils-bindings-factory';\nimport { MetadataValidationState } from '@comunica/utils-metadata';\nimport { estimateCardinality } from '@comunica/utils-query-operation';\nimport type * as RDF from '@rdfjs/types';\nimport type { AsyncIterator } from 'asynciterator';\nimport { TransformIterator, wrap } from 'asynciterator';\nimport { SparqlEndpointFetcher } from 'fetch-sparql-endpoint';\nimport { LRUCache } from 'lru-cache';\nimport { uniqTerms } from 'rdf-terms';\nimport type { BindMethod } from './ActorQuerySourceIdentifyHypermediaSparql';\n\nexport class QuerySourceSparql implements IQuerySource {\n public readonly referenceValue: string;\n private url: string;\n private readonly urlBackup: string;\n private readonly context: IActionContext;\n private readonly mediatorHttp: MediatorHttp;\n private readonly mediatorQuerySerialize: MediatorQuerySerialize;\n private readonly bindMethod: BindMethod;\n private readonly countTimeout: number;\n private readonly cardinalityCountQueries: boolean;\n private readonly cardinalityEstimateConstruction: boolean;\n private readonly defaultGraph?: string;\n private readonly unionDefaultGraph: boolean;\n private readonly propertyFeatures?: Set<string>;\n private readonly datasets?: IDataset[];\n public readonly extensionFunctions?: string[];\n private readonly dataFactory: ComunicaDataFactory;\n private readonly algebraFactory: AlgebraFactory;\n private readonly bindingsFactory: BindingsFactory;\n\n private readonly endpointFetcher: SparqlEndpointFetcher;\n private readonly cache: LRUCache<string, QueryResultCardinality> | undefined;\n\n private lastSourceContext: IActionContext | undefined;\n\n public constructor(\n url: string,\n urlBackup: string,\n context: IActionContext,\n mediatorHttp: MediatorHttp,\n mediatorQuerySerialize: MediatorQuerySerialize,\n bindMethod: BindMethod,\n dataFactory: ComunicaDataFactory,\n algebraFactory: AlgebraFactory,\n bindingsFactory: BindingsFactory,\n forceHttpGet: boolean,\n cacheSize: number,\n countTimeout: number,\n cardinalityCountQueries: boolean,\n cardinalityEstimateConstruction: boolean,\n forceGetIfUrlLengthBelow: number,\n parseUnsupportedVersions: boolean,\n metadata: Record<string, any>,\n ) {\n this.referenceValue = urlBackup;\n this.url = url;\n this.urlBackup = urlBackup;\n this.context = context;\n this.mediatorHttp = mediatorHttp;\n this.mediatorQuerySerialize = mediatorQuerySerialize;\n this.bindMethod = bindMethod;\n this.dataFactory = dataFactory;\n this.algebraFactory = algebraFactory;\n this.bindingsFactory = bindingsFactory;\n this.endpointFetcher = new SparqlEndpointFetcher({\n method: forceHttpGet ? 'GET' : 'POST',\n fetch: async(input: Request | string, init?: RequestInit) => {\n const response = await this.mediatorHttp.mediate(\n { input, init, context: this.lastSourceContext! },\n );\n // If we encounter a 404, try our backup URL.\n // After retrying the request with the new URL, we replace the URL for future requests.\n if (response.status === 404 && this.url !== this.urlBackup) {\n Actor.getContextLogger(this.context)?.warn(`Encountered a 404 when requesting ${this.url} according to the service description of ${this.urlBackup}. This is a server configuration issue. Retrying the current and modifying future requests to ${this.urlBackup} instead.`);\n input = (<string> input).replace(this.url, this.urlBackup);\n this.url = this.urlBackup;\n return await this.mediatorHttp.mediate(\n { input, init, context: this.lastSourceContext! },\n );\n }\n return response;\n },\n prefixVariableQuestionMark: true,\n dataFactory,\n forceGetIfUrlLengthBelow,\n directPost: metadata.postAccepted && !metadata.postAccepted.includes('application/x-www-form-urlencoded'),\n parseUnsupportedVersions,\n });\n this.cache = cacheSize > 0 ?\n new LRUCache<string, QueryResultCardinality>({ max: cacheSize }) :\n undefined;\n this.countTimeout = countTimeout;\n this.cardinalityCountQueries = cardinalityCountQueries;\n this.cardinalityEstimateConstruction = cardinalityEstimateConstruction;\n this.defaultGraph = metadata.defaultGraph;\n this.unionDefaultGraph = metadata.unionDefaultGraph ?? false;\n this.datasets = metadata.datasets;\n this.extensionFunctions = metadata.extensionFunctions;\n this.propertyFeatures = metadata.propertyFeatures ? new Set(metadata.propertyFeatures) : undefined;\n }\n\n public async getFilterFactor(): Promise<number> {\n return 1;\n }\n\n public async getSelectorShape(): Promise<FragmentSelectorShape> {\n const innerDisjunction: FragmentSelectorShape = {\n type: 'disjunction',\n children: [\n {\n type: 'operation',\n operation: { operationType: 'wildcard' },\n joinBindings: true,\n },\n ],\n };\n if (this.extensionFunctions) {\n innerDisjunction.children.push({\n type: 'operation',\n operation: {\n operationType: 'type',\n type: Algebra.Types.EXPRESSION,\n extensionFunctions: this.extensionFunctions,\n },\n joinBindings: true,\n });\n }\n return {\n type: 'conjunction',\n children: [\n innerDisjunction,\n {\n // DISTINCT CONSTRUCT is not allowed in SPARQL 1.1, so we explicitly disallowed it.\n type: 'negation',\n child: {\n type: 'operation',\n operation: { operationType: 'type', type: Algebra.Types.DISTINCT },\n children: [\n {\n type: 'operation',\n operation: { operationType: 'type', type: Algebra.Types.CONSTRUCT },\n children: [\n {\n type: 'operation',\n operation: { operationType: 'wildcard' },\n joinBindings: true,\n },\n ],\n },\n ],\n },\n },\n ],\n };\n }\n\n public queryBindings(\n operationIn: Algebra.Operation,\n context: IActionContext,\n options?: IQueryBindingsOptions,\n ): BindingsStream {\n // If bindings are passed, modify the operations\n let operationPromise: Promise<Algebra.Operation>;\n if (options?.joinBindings) {\n operationPromise = QuerySourceSparql.addBindingsToOperation(\n this.algebraFactory,\n this.bindMethod,\n operationIn,\n options.joinBindings,\n );\n } else {\n operationPromise = Promise.resolve(operationIn);\n }\n\n const bindings: BindingsStream = new TransformIterator(async() => {\n // Prepare queries\n const operation = await operationPromise;\n const variables: RDF.Variable[] = algebraUtils.inScopeVariables(operation);\n const queryString = context.get<string>(KeysInitQuery.queryString);\n const queryFormat: RDF.QueryFormat = context.getSafe(KeysInitQuery.queryFormat);\n const selectQuery: string = !options?.joinBindings && queryString && queryFormat.language === 'sparql' ?\n queryString :\n await this.operationToSelectQuery(this.algebraFactory, operation, variables);\n const undefVariables = QuerySourceSparql.getOperationUndefs(operation);\n\n return this.queryBindingsRemote(this.url, selectQuery, variables, context, undefVariables);\n }, { autoStart: false });\n this.attachMetadata(bindings, context, operationPromise);\n\n return bindings;\n }\n\n public queryQuads(operation: Algebra.Operation, context: IActionContext): AsyncIterator<RDF.Quad> {\n const quads = wrap<any>((async() => {\n this.lastSourceContext = this.context.merge(context);\n const query: string = context.get(KeysInitQuery.queryString) ?? await this.operationToQuery(operation);\n const rawStream = await this.endpointFetcher.fetchTriples(this.url, query);\n this.lastSourceContext = undefined;\n return rawStream;\n })(), { autoStart: false, maxBufferSize: Number.POSITIVE_INFINITY });\n this.attachMetadata(quads, context, Promise.resolve((<Algebra.Operation & { input: any }>operation).input));\n return quads;\n }\n\n public async queryBoolean(operation: Algebra.Ask, context: IActionContext): Promise<boolean> {\n // Shortcut the ASK query to return true when supported propertyFeature predicates are used in it.\n if (this.operationUsesPropertyFeatures(operation)) {\n return true;\n }\n // Without propertyFeature overlap, perform the actual ASK query.\n this.lastSourceContext = this.context.merge(context);\n const query: string = context.get(KeysInitQuery.queryString) ?? await this.operationToQuery(operation);\n const promise = this.endpointFetcher.fetchAsk(this.url, query);\n this.lastSourceContext = undefined;\n return promise;\n }\n\n public async queryVoid(operation: Algebra.Operation, context: IActionContext): Promise<void> {\n this.lastSourceContext = this.context.merge(context);\n const query: string = context.get(KeysInitQuery.queryString) ?? await this.operationToQuery(operation);\n const promise = this.endpointFetcher.fetchUpdate(this.url, query);\n this.lastSourceContext = undefined;\n return promise;\n }\n\n protected attachMetadata(\n target: AsyncIterator<any>,\n context: IActionContext,\n operationPromise: Promise<Algebra.Operation>,\n ): void {\n // Emit metadata containing the estimated count\n let variablesCount: MetadataVariable[] = [];\n // eslint-disable-next-line no-async-promise-executor,ts/no-misused-promises\n new Promise<QueryResultCardinality>(async(resolve, reject) => {\n try {\n const operation = await operationPromise;\n const variablesScoped = algebraUtils.inScopeVariables(operation);\n const countQuery = await this.operationToNormalizedCountQuery(operation);\n\n const undefVariables = QuerySourceSparql.getOperationUndefs(operation);\n variablesCount = variablesScoped.map(variable => ({\n variable,\n canBeUndef: undefVariables.some(undefVariable => undefVariable.equals(variable)),\n }));\n\n const cachedCardinality = this.cache?.get(countQuery);\n if (cachedCardinality) {\n return resolve(cachedCardinality);\n }\n\n // Attempt to estimate locally prior to sending a COUNT request, as this should be much faster.\n // The estimates may be off by varying amounts, so this is set behind a configuration flag.\n if (this.cardinalityEstimateConstruction) {\n const localEstimate = await this.estimateOperationCardinality(operation);\n if (Number.isFinite(localEstimate.value)) {\n this.cache?.set(countQuery, localEstimate);\n return resolve(localEstimate);\n }\n }\n\n // Don't send count queries if disabled.\n if (!this.cardinalityCountQueries) {\n return resolve({ type: 'estimate', value: Number.POSITIVE_INFINITY, dataset: this.url });\n }\n\n const timeoutHandler = setTimeout(() => resolve({\n type: 'estimate',\n value: Number.POSITIVE_INFINITY,\n dataset: this.url,\n }), this.countTimeout);\n const varCount = this.dataFactory.variable('count');\n const bindingsStream: BindingsStream = await this\n .queryBindingsRemote(this.url, countQuery, [ varCount ], context, []);\n bindingsStream\n .on('data', (bindings: Bindings) => {\n clearTimeout(timeoutHandler);\n const count = bindings.get(varCount);\n const cardinality: QueryResultCardinality = {\n type: 'estimate',\n value: Number.POSITIVE_INFINITY,\n dataset: this.url,\n };\n if (count) {\n const cardinalityValue: number = Number.parseInt(count.value, 10);\n if (!Number.isNaN(cardinalityValue)) {\n cardinality.type = 'exact';\n cardinality.value = cardinalityValue;\n this.cache?.set(countQuery, cardinality);\n }\n }\n return resolve(cardinality);\n })\n .on('error', () => {\n clearTimeout(timeoutHandler);\n resolve({ type: 'estimate', value: Number.POSITIVE_INFINITY, dataset: this.url });\n })\n .on('end', () => {\n clearTimeout(timeoutHandler);\n resolve({ type: 'estimate', value: Number.POSITIVE_INFINITY, dataset: this.url });\n });\n } catch (error: unknown) {\n reject(error);\n }\n })\n .then(cardinality => target.setProperty('metadata', {\n state: new MetadataValidationState(),\n cardinality,\n variables: variablesCount,\n }))\n .catch(() => target.setProperty('metadata', {\n state: new MetadataValidationState(),\n cardinality: { type: 'estimate', value: Number.POSITIVE_INFINITY, dataset: this.url },\n variables: variablesCount,\n }));\n }\n\n /**\n * Convert an algebra operation into a query string, and if the operation is a simple triple pattern,\n * then also replace any variables with s, p, and o to increase the chance of cache hits.\n * @param {Algebra.Operation} operation The operation to convert into a query string.\n * @returns {string} Query string for a COUNT query over the operation.\n */\n public async operationToNormalizedCountQuery(operation: Algebra.Operation): Promise<string> {\n const normalizedOperation = isKnownOperation(operation, Algebra.Types.PATTERN) ?\n this.algebraFactory.createPattern(\n operation.subject.termType === 'Variable' ? this.dataFactory.variable('s') : operation.subject,\n operation.predicate.termType === 'Variable' ? this.dataFactory.variable('p') : operation.predicate,\n operation.object.termType === 'Variable' ? this.dataFactory.variable('o') : operation.object,\n ) :\n operation;\n return await this.operationToCountQuery(\n this.dataFactory,\n this.algebraFactory,\n normalizedOperation,\n );\n }\n\n /**\n * Performs local cardinality estimation for the specified SPARQL algebra operation, which should\n * result in better estimation performance at the expense of accuracy.\n * @param {Algebra.Operation} operation A query operation.\n */\n public async estimateOperationCardinality(operation: Algebra.Operation): Promise<QueryResultCardinality> {\n if (this.operationUsesPropertyFeatures(operation)) {\n return { type: 'estimate', value: 1, dataset: this.url };\n }\n\n const dataset: IDataset = {\n getCardinality: async(operation: Algebra.Operation): Promise<QueryResultCardinality | undefined> => {\n const queryString = await this.operationToNormalizedCountQuery(operation);\n\n const cachedCardinality = this.cache?.get(queryString);\n if (cachedCardinality) {\n return cachedCardinality;\n }\n\n if (this.datasets) {\n const cardinalities = await Promise.all(this.datasets\n .filter(ds => this.unionDefaultGraph || (this.defaultGraph && ds.uri.endsWith(this.defaultGraph)))\n .map(ds => estimateCardinality(operation, ds)));\n\n const cardinality: QueryResultCardinality = {\n type: cardinalities.some(card => card.type === 'estimate') ? 'estimate' : 'exact',\n value: cardinalities.length > 0 ? cardinalities.reduce((acc, card) => acc + card.value, 0) : 0,\n dataset: this.url,\n };\n\n return cardinality;\n }\n },\n source: this.url,\n uri: this.url,\n };\n\n return estimateCardinality(operation, dataset);\n }\n\n /**\n * Checks whether the provided operation makes use of this endpoint's property features,\n * if the endpoint has property features detected.\n * @param {Algebra.Operation} operation The operation to check.\n * @returns {boolean} Whether the operation makes use of property features.\n */\n public operationUsesPropertyFeatures(operation: Algebra.Operation): boolean {\n let propertyFeaturesUsed = false;\n if (this.propertyFeatures) {\n algebraUtils.visitOperation(operation, {\n [Algebra.Types.PATTERN]: {\n visitor: (subOp) => {\n if (subOp.predicate.termType === 'NamedNode' && this.propertyFeatures!.has(subOp.predicate.value)) {\n propertyFeaturesUsed = true;\n }\n return false;\n },\n },\n [Algebra.Types.LINK]: {\n visitor: (subOp) => {\n if (this.propertyFeatures!.has(subOp.iri.value)) {\n propertyFeaturesUsed = true;\n }\n return false;\n },\n },\n [Algebra.Types.NPS]: {\n visitor: (subOp) => {\n if (subOp.iris.some(iri => this.propertyFeatures!.has(iri.value))) {\n propertyFeaturesUsed = true;\n }\n return false;\n },\n },\n });\n }\n return propertyFeaturesUsed;\n }\n\n /**\n * Create an operation that includes the bindings from the given bindings stream.\n * @param algebraFactory The algebra factory.\n * @param bindMethod A method for adding bindings to an operation.\n * @param operation The operation to bind to.\n * @param addBindings The bindings to add.\n * @param addBindings.bindings The bindings stream.\n * @param addBindings.metadata The bindings metadata.\n */\n public static async addBindingsToOperation(\n algebraFactory: AlgebraFactory,\n bindMethod: BindMethod,\n operation: Algebra.Operation,\n addBindings: { bindings: BindingsStream; metadata: MetadataBindings },\n ): Promise<Algebra.Operation> {\n const bindings = await addBindings.bindings.toArray();\n\n switch (bindMethod) {\n case 'values':\n return algebraFactory.createJoin([\n algebraFactory.createValues(\n addBindings.metadata.variables.map(v => v.variable),\n bindings.map(binding => Object.fromEntries([ ...binding ]\n .map(([ key, value ]) => [ key.value, <RDF.Literal | RDF.NamedNode> value ]))),\n ),\n operation,\n ], false);\n case 'union': { throw new Error('Not implemented yet: \"union\" case'); }\n case 'filter': { throw new Error('Not implemented yet: \"filter\" case'); }\n }\n }\n\n /**\n * Convert an operation to a select query for this pattern.\n * @param algebraFactory The algebra factory.\n * @param {Algebra.Operation} operation A query operation.\n * @param {RDF.Variable[]} variables The variables in scope for the operation.\n * @return {string} A select query string.\n */\n public operationToSelectQuery(\n algebraFactory: AlgebraFactory,\n operation: Algebra.Operation,\n variables: RDF.Variable[],\n ): Promise<string> {\n return this.operationToQuery(algebraFactory.createProject(operation, variables));\n }\n\n /**\n * Convert an operation to a count query for the number of matching triples for this pattern.\n * @param dataFactory The data factory.\n * @param algebraFactory The algebra factory.\n * @param {Algebra.Operation} operation A query operation.\n * @return {string} A count query string.\n */\n public operationToCountQuery(\n dataFactory: ComunicaDataFactory,\n algebraFactory: AlgebraFactory,\n operation: Algebra.Operation,\n ): Promise<string> {\n return this.operationToQuery(algebraFactory.createProject(\n algebraFactory.createExtend(\n algebraFactory.createGroup(\n operation,\n [],\n [ algebraFactory.createBoundAggregate(\n dataFactory.variable('var0'),\n 'count',\n algebraFactory.createWildcardExpression(),\n false,\n ) ],\n ),\n dataFactory.variable('count'),\n algebraFactory.createTermExpression(dataFactory.variable('var0')),\n ),\n [ dataFactory.variable('count') ],\n ));\n }\n\n /**\n * Convert an operation to a query for this pattern.\n * @param {Algebra.Operation} operation A query operation.\n * @return {string} A query string.\n */\n public async operationToQuery(operation: Algebra.Operation): Promise<string> {\n return (await this.mediatorQuerySerialize.mediate({\n queryFormat: { language: 'sparql', version: '1.2' },\n operation,\n newlines: false,\n indentWidth: 0,\n context: this.context,\n })).query;\n }\n\n /**\n * Check if the given operation may produce undefined values.\n * @param operation\n */\n public static getOperationUndefs(operation: Algebra.Operation): RDF.Variable[] {\n const variables: RDF.Variable[] = [];\n algebraUtils.visitOperation(operation, {\n [Algebra.Types.LEFT_JOIN]: { preVisitor: (subOperation) => {\n const left = algebraUtils.inScopeVariables(subOperation.input[0]);\n const right = algebraUtils.inScopeVariables(subOperation.input[1]);\n for (const varRight of right) {\n if (!left.some(varLeft => varLeft.equals(varRight))) {\n variables.push(varRight);\n }\n }\n return { continue: false };\n } },\n [Algebra.Types.VALUES]: { preVisitor: (values) => {\n for (const variable of values.variables) {\n if (values.bindings.some(bindings => !(variable.value in bindings))) {\n variables.push(variable);\n }\n }\n return { continue: false };\n } },\n [Algebra.Types.UNION]: { preVisitor: (union) => {\n // Determine variables in scope of the union branches that are not occurring in every branch\n const scopedVariables = union.input.map(op => algebraUtils.inScopeVariables(op));\n for (const variable of uniqTerms(scopedVariables.flat())) {\n if (!scopedVariables.every(input => input.some(inputVar => inputVar.equals(variable)))) {\n variables.push(variable);\n }\n }\n return {};\n } },\n });\n return uniqTerms(variables);\n }\n\n /**\n * Send a SPARQL query to a SPARQL endpoint and retrieve its bindings as a stream.\n * @param {string} endpoint A SPARQL endpoint URL.\n * @param {string} query A SPARQL query string.\n * @param {RDF.Variable[]} variables The expected variables.\n * @param {IActionContext} context The source context.\n * @param undefVariables Variables that may have undefs.\n * @return {BindingsStream} A stream of bindings.\n */\n public async queryBindingsRemote(\n endpoint: string,\n query: string,\n variables: RDF.Variable[],\n context: IActionContext,\n undefVariables: RDF.Variable[],\n ): Promise<BindingsStream> {\n // Index undef variables\n const undefVariablesSet = new Set(undefVariables.map(v => v.value));\n\n this.lastSourceContext = this.context.merge(context);\n const rawStream = await this.endpointFetcher.fetchBindings(endpoint, query);\n this.lastSourceContext = undefined;\n\n const wrapped = wrap<any>(rawStream, { autoStart: false, maxBufferSize: Number.POSITIVE_INFINITY });\n return wrapped.map<RDF.Bindings>((rawData: Record<string, RDF.Term>) => {\n const bindings = variables.map((variable) => {\n const value = rawData[`?${variable.value}`];\n if (!undefVariablesSet.has(variable.value) && !value) {\n Actor.getContextLogger(this.context)?.warn(`The endpoint ${endpoint} failed to provide a binding for ${variable.value}.`);\n }\n return <[RDF.Variable, RDF.Term]>[ variable, value ];\n }).filter(([ _, v ]) => Boolean(v));\n return this.bindingsFactory.bindings(bindings);\n });\n }\n\n public toString(): string {\n return `QuerySourceSparql(${this.url})`;\n }\n}\n"]}
1
+ 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type { MediatorHttp } from '@comunica/bus-http';\nimport type { MediatorQuerySerialize } from '@comunica/bus-query-serialize';\nimport { KeysInitQuery } from '@comunica/context-entries';\nimport { Actor } from '@comunica/core';\nimport type {\n Bindings,\n BindingsStream,\n ComunicaDataFactory,\n FragmentSelectorShape,\n IActionContext,\n IDataset,\n IQueryBindingsOptions,\n IQuerySource,\n MetadataBindings,\n MetadataVariable,\n QueryResultCardinality,\n} from '@comunica/types';\nimport type { AlgebraFactory } from '@comunica/utils-algebra';\nimport { Algebra, algebraUtils, isKnownOperation } from '@comunica/utils-algebra';\nimport type { BindingsFactory } from '@comunica/utils-bindings-factory';\nimport { MetadataValidationState } from '@comunica/utils-metadata';\nimport { estimateCardinality } from '@comunica/utils-query-operation';\nimport type * as RDF from '@rdfjs/types';\nimport type { AsyncIterator } from 'asynciterator';\nimport { TransformIterator, wrap } from 'asynciterator';\nimport { SparqlEndpointFetcher } from 'fetch-sparql-endpoint';\nimport { LRUCache } from 'lru-cache';\nimport { uniqTerms } from 'rdf-terms';\nimport type { BindMethod } from './ActorQuerySourceIdentifyHypermediaSparql';\n\nexport class QuerySourceSparql implements IQuerySource {\n public readonly referenceValue: string;\n private url: string;\n private readonly urlBackup: string;\n private readonly context: IActionContext;\n private readonly mediatorHttp: MediatorHttp;\n private readonly mediatorQuerySerialize: MediatorQuerySerialize;\n private readonly bindMethod: BindMethod;\n private readonly countTimeout: number;\n private readonly cardinalityCountQueries: boolean;\n private readonly cardinalityEstimateConstruction: boolean;\n private readonly defaultGraph?: string;\n private readonly unionDefaultGraph: boolean;\n private readonly propertyFeatures?: Set<string>;\n private readonly datasets?: IDataset[];\n public readonly extensionFunctions?: string[];\n private readonly dataFactory: ComunicaDataFactory;\n private readonly algebraFactory: AlgebraFactory;\n private readonly bindingsFactory: BindingsFactory;\n\n private readonly endpointFetcher: SparqlEndpointFetcher;\n private readonly cache: LRUCache<string, QueryResultCardinality> | undefined;\n\n private lastSourceContext: IActionContext | undefined;\n\n public constructor(\n url: string,\n urlBackup: string,\n context: IActionContext,\n mediatorHttp: MediatorHttp,\n mediatorQuerySerialize: MediatorQuerySerialize,\n bindMethod: BindMethod,\n dataFactory: ComunicaDataFactory,\n algebraFactory: AlgebraFactory,\n bindingsFactory: BindingsFactory,\n forceHttpGet: boolean,\n cacheSize: number,\n countTimeout: number,\n cardinalityCountQueries: boolean,\n cardinalityEstimateConstruction: boolean,\n forceGetIfUrlLengthBelow: number,\n parseUnsupportedVersions: boolean,\n metadata: Record<string, any>,\n ) {\n this.referenceValue = urlBackup;\n this.url = url;\n this.urlBackup = urlBackup;\n this.context = context;\n this.mediatorHttp = mediatorHttp;\n this.mediatorQuerySerialize = mediatorQuerySerialize;\n this.bindMethod = bindMethod;\n this.dataFactory = dataFactory;\n this.algebraFactory = algebraFactory;\n this.bindingsFactory = bindingsFactory;\n this.endpointFetcher = new SparqlEndpointFetcher({\n method: forceHttpGet ? 'GET' : 'POST',\n fetch: async(input: Request | string, init?: RequestInit) => {\n const response = await this.mediatorHttp.mediate(\n { input, init, context: this.lastSourceContext! },\n );\n // If we encounter a 404, try our backup URL.\n // After retrying the request with the new URL, we replace the URL for future requests.\n if (response.status === 404 && this.url !== this.urlBackup) {\n Actor.getContextLogger(this.context)?.warn(`Encountered a 404 when requesting ${this.url} according to the service description of ${this.urlBackup}. This is a server configuration issue. Retrying the current and modifying future requests to ${this.urlBackup} instead.`);\n input = (<string> input).replace(this.url, this.urlBackup);\n this.url = this.urlBackup;\n return await this.mediatorHttp.mediate(\n { input, init, context: this.lastSourceContext! },\n );\n }\n return response;\n },\n prefixVariableQuestionMark: true,\n dataFactory,\n forceGetIfUrlLengthBelow,\n directPost: metadata.postAccepted && !metadata.postAccepted.includes('application/x-www-form-urlencoded'),\n parseUnsupportedVersions,\n });\n this.cache = cacheSize > 0 ?\n new LRUCache<string, QueryResultCardinality>({ max: cacheSize }) :\n undefined;\n this.countTimeout = countTimeout;\n this.cardinalityCountQueries = cardinalityCountQueries;\n this.cardinalityEstimateConstruction = cardinalityEstimateConstruction;\n this.defaultGraph = metadata.defaultGraph;\n this.unionDefaultGraph = metadata.unionDefaultGraph ?? false;\n this.datasets = metadata.datasets;\n this.extensionFunctions = metadata.extensionFunctions;\n this.propertyFeatures = metadata.propertyFeatures ? new Set(metadata.propertyFeatures) : undefined;\n }\n\n public async getFilterFactor(): Promise<number> {\n return 1;\n }\n\n public async getSelectorShape(): Promise<FragmentSelectorShape> {\n const innerDisjunction: FragmentSelectorShape = {\n type: 'disjunction',\n children: [\n {\n type: 'operation',\n operation: { operationType: 'wildcard' },\n joinBindings: true,\n },\n ],\n };\n if (this.extensionFunctions) {\n innerDisjunction.children.push({\n type: 'operation',\n operation: {\n operationType: 'type',\n type: Algebra.Types.EXPRESSION,\n extensionFunctions: this.extensionFunctions,\n },\n joinBindings: true,\n });\n }\n return {\n type: 'conjunction',\n children: [\n innerDisjunction,\n {\n // DISTINCT CONSTRUCT is not allowed in SPARQL 1.1, so we explicitly disallowed it.\n type: 'negation',\n child: {\n type: 'operation',\n operation: { operationType: 'type', type: Algebra.Types.DISTINCT },\n children: [\n {\n type: 'operation',\n operation: { operationType: 'type', type: Algebra.Types.CONSTRUCT },\n children: [\n {\n type: 'operation',\n operation: { operationType: 'wildcard' },\n joinBindings: true,\n },\n ],\n },\n ],\n },\n },\n ],\n };\n }\n\n public queryBindings(\n operationIn: Algebra.Operation,\n context: IActionContext,\n options?: IQueryBindingsOptions,\n ): BindingsStream {\n // If bindings are passed, modify the operations\n let operationPromise: Promise<Algebra.Operation>;\n if (options?.joinBindings) {\n operationPromise = QuerySourceSparql.addBindingsToOperation(\n this.algebraFactory,\n this.bindMethod,\n operationIn,\n options.joinBindings,\n );\n } else {\n operationPromise = Promise.resolve(operationIn);\n }\n\n const bindings: BindingsStream = new TransformIterator(async() => {\n // Prepare queries\n const operation = await operationPromise;\n const variables: RDF.Variable[] = algebraUtils.inScopeVariables(operation);\n const queryString = context.get<string>(KeysInitQuery.queryString);\n const queryFormat: RDF.QueryFormat = context.getSafe(KeysInitQuery.queryFormat);\n const selectQuery: string = !options?.joinBindings && queryString && queryFormat.language === 'sparql' ?\n queryString :\n await this.operationToSelectQuery(this.algebraFactory, operation, variables);\n const undefVariables = QuerySourceSparql.getOperationUndefs(operation);\n\n return this.queryBindingsRemote(this.url, selectQuery, variables, context, undefVariables);\n }, { autoStart: false });\n this.attachMetadata(bindings, context, operationPromise);\n\n return bindings;\n }\n\n public queryQuads(operation: Algebra.Operation, context: IActionContext): AsyncIterator<RDF.Quad> {\n const quads = wrap<any>((async() => {\n this.lastSourceContext = this.context.merge(context);\n const query: string = context.get(KeysInitQuery.queryString) ?? await this.operationToQuery(operation);\n const rawStream = await this.endpointFetcher.fetchTriples(this.url, query);\n return rawStream;\n })(), { autoStart: false, maxBufferSize: Number.POSITIVE_INFINITY });\n this.attachMetadata(quads, context, Promise.resolve((<Algebra.Operation & { input: any }>operation).input));\n return quads;\n }\n\n public async queryBoolean(operation: Algebra.Ask, context: IActionContext): Promise<boolean> {\n // Shortcut the ASK query to return true when supported propertyFeature predicates are used in it.\n if (this.operationUsesPropertyFeatures(operation)) {\n return true;\n }\n // Without propertyFeature overlap, perform the actual ASK query.\n this.lastSourceContext = this.context.merge(context);\n const query: string = context.get(KeysInitQuery.queryString) ?? await this.operationToQuery(operation);\n const promise = this.endpointFetcher.fetchAsk(this.url, query);\n return promise;\n }\n\n public async queryVoid(operation: Algebra.Operation, context: IActionContext): Promise<void> {\n this.lastSourceContext = this.context.merge(context);\n const query: string = context.get(KeysInitQuery.queryString) ?? await this.operationToQuery(operation);\n const promise = this.endpointFetcher.fetchUpdate(this.url, query);\n return promise;\n }\n\n protected attachMetadata(\n target: AsyncIterator<any>,\n context: IActionContext,\n operationPromise: Promise<Algebra.Operation>,\n ): void {\n // Emit metadata containing the estimated count\n let variablesCount: MetadataVariable[] = [];\n // eslint-disable-next-line no-async-promise-executor,ts/no-misused-promises\n new Promise<QueryResultCardinality>(async(resolve, reject) => {\n try {\n const operation = await operationPromise;\n const variablesScoped = algebraUtils.inScopeVariables(operation);\n const countQuery = await this.operationToNormalizedCountQuery(operation);\n\n const undefVariables = QuerySourceSparql.getOperationUndefs(operation);\n variablesCount = variablesScoped.map(variable => ({\n variable,\n canBeUndef: undefVariables.some(undefVariable => undefVariable.equals(variable)),\n }));\n\n const cachedCardinality = this.cache?.get(countQuery);\n if (cachedCardinality) {\n return resolve(cachedCardinality);\n }\n\n // Attempt to estimate locally prior to sending a COUNT request, as this should be much faster.\n // The estimates may be off by varying amounts, so this is set behind a configuration flag.\n if (this.cardinalityEstimateConstruction) {\n const localEstimate = await this.estimateOperationCardinality(operation);\n if (Number.isFinite(localEstimate.value)) {\n this.cache?.set(countQuery, localEstimate);\n return resolve(localEstimate);\n }\n }\n\n // Don't send count queries if disabled.\n if (!this.cardinalityCountQueries) {\n return resolve({ type: 'estimate', value: Number.POSITIVE_INFINITY, dataset: this.url });\n }\n\n const timeoutHandler = setTimeout(() => resolve({\n type: 'estimate',\n value: Number.POSITIVE_INFINITY,\n dataset: this.url,\n }), this.countTimeout);\n const varCount = this.dataFactory.variable('count');\n const bindingsStream: BindingsStream = await this\n .queryBindingsRemote(this.url, countQuery, [ varCount ], context, []);\n bindingsStream\n .on('data', (bindings: Bindings) => {\n clearTimeout(timeoutHandler);\n const count = bindings.get(varCount);\n const cardinality: QueryResultCardinality = {\n type: 'estimate',\n value: Number.POSITIVE_INFINITY,\n dataset: this.url,\n };\n if (count) {\n const cardinalityValue: number = Number.parseInt(count.value, 10);\n if (!Number.isNaN(cardinalityValue)) {\n cardinality.type = 'exact';\n cardinality.value = cardinalityValue;\n this.cache?.set(countQuery, cardinality);\n }\n }\n return resolve(cardinality);\n })\n .on('error', () => {\n clearTimeout(timeoutHandler);\n resolve({ type: 'estimate', value: Number.POSITIVE_INFINITY, dataset: this.url });\n })\n .on('end', () => {\n clearTimeout(timeoutHandler);\n resolve({ type: 'estimate', value: Number.POSITIVE_INFINITY, dataset: this.url });\n });\n } catch (error: unknown) {\n reject(error);\n }\n })\n .then(cardinality => target.setProperty('metadata', {\n state: new MetadataValidationState(),\n cardinality,\n variables: variablesCount,\n }))\n .catch(() => target.setProperty('metadata', {\n state: new MetadataValidationState(),\n cardinality: { type: 'estimate', value: Number.POSITIVE_INFINITY, dataset: this.url },\n variables: variablesCount,\n }));\n }\n\n /**\n * Convert an algebra operation into a query string, and if the operation is a simple triple pattern,\n * then also replace any variables with s, p, and o to increase the chance of cache hits.\n * @param {Algebra.Operation} operation The operation to convert into a query string.\n * @returns {string} Query string for a COUNT query over the operation.\n */\n public async operationToNormalizedCountQuery(operation: Algebra.Operation): Promise<string> {\n const normalizedOperation = isKnownOperation(operation, Algebra.Types.PATTERN) ?\n this.algebraFactory.createPattern(\n operation.subject.termType === 'Variable' ? this.dataFactory.variable('s') : operation.subject,\n operation.predicate.termType === 'Variable' ? this.dataFactory.variable('p') : operation.predicate,\n operation.object.termType === 'Variable' ? this.dataFactory.variable('o') : operation.object,\n ) :\n operation;\n return await this.operationToCountQuery(\n this.dataFactory,\n this.algebraFactory,\n normalizedOperation,\n );\n }\n\n /**\n * Performs local cardinality estimation for the specified SPARQL algebra operation, which should\n * result in better estimation performance at the expense of accuracy.\n * @param {Algebra.Operation} operation A query operation.\n */\n public async estimateOperationCardinality(operation: Algebra.Operation): Promise<QueryResultCardinality> {\n if (this.operationUsesPropertyFeatures(operation)) {\n return { type: 'estimate', value: 1, dataset: this.url };\n }\n\n const dataset: IDataset = {\n getCardinality: async(operation: Algebra.Operation): Promise<QueryResultCardinality | undefined> => {\n const queryString = await this.operationToNormalizedCountQuery(operation);\n\n const cachedCardinality = this.cache?.get(queryString);\n if (cachedCardinality) {\n return cachedCardinality;\n }\n\n if (this.datasets) {\n const cardinalities = await Promise.all(this.datasets\n .filter(ds => this.unionDefaultGraph || (this.defaultGraph && ds.uri.endsWith(this.defaultGraph)))\n .map(ds => estimateCardinality(operation, ds)));\n\n const cardinality: QueryResultCardinality = {\n type: cardinalities.some(card => card.type === 'estimate') ? 'estimate' : 'exact',\n value: cardinalities.length > 0 ? cardinalities.reduce((acc, card) => acc + card.value, 0) : 0,\n dataset: this.url,\n };\n\n return cardinality;\n }\n },\n source: this.url,\n uri: this.url,\n };\n\n return estimateCardinality(operation, dataset);\n }\n\n /**\n * Checks whether the provided operation makes use of this endpoint's property features,\n * if the endpoint has property features detected.\n * @param {Algebra.Operation} operation The operation to check.\n * @returns {boolean} Whether the operation makes use of property features.\n */\n public operationUsesPropertyFeatures(operation: Algebra.Operation): boolean {\n let propertyFeaturesUsed = false;\n if (this.propertyFeatures) {\n algebraUtils.visitOperation(operation, {\n [Algebra.Types.PATTERN]: {\n visitor: (subOp) => {\n if (subOp.predicate.termType === 'NamedNode' && this.propertyFeatures!.has(subOp.predicate.value)) {\n propertyFeaturesUsed = true;\n }\n return false;\n },\n },\n [Algebra.Types.LINK]: {\n visitor: (subOp) => {\n if (this.propertyFeatures!.has(subOp.iri.value)) {\n propertyFeaturesUsed = true;\n }\n return false;\n },\n },\n [Algebra.Types.NPS]: {\n visitor: (subOp) => {\n if (subOp.iris.some(iri => this.propertyFeatures!.has(iri.value))) {\n propertyFeaturesUsed = true;\n }\n return false;\n },\n },\n });\n }\n return propertyFeaturesUsed;\n }\n\n /**\n * Create an operation that includes the bindings from the given bindings stream.\n * @param algebraFactory The algebra factory.\n * @param bindMethod A method for adding bindings to an operation.\n * @param operation The operation to bind to.\n * @param addBindings The bindings to add.\n * @param addBindings.bindings The bindings stream.\n * @param addBindings.metadata The bindings metadata.\n */\n public static async addBindingsToOperation(\n algebraFactory: AlgebraFactory,\n bindMethod: BindMethod,\n operation: Algebra.Operation,\n addBindings: { bindings: BindingsStream; metadata: MetadataBindings },\n ): Promise<Algebra.Operation> {\n const bindings = await addBindings.bindings.toArray();\n\n switch (bindMethod) {\n case 'values':\n return algebraFactory.createJoin([\n algebraFactory.createValues(\n addBindings.metadata.variables.map(v => v.variable),\n bindings.map(binding => Object.fromEntries([ ...binding ]\n .map(([ key, value ]) => [ key.value, <RDF.Literal | RDF.NamedNode> value ]))),\n ),\n operation,\n ], false);\n case 'union': { throw new Error('Not implemented yet: \"union\" case'); }\n case 'filter': { throw new Error('Not implemented yet: \"filter\" case'); }\n }\n }\n\n /**\n * Convert an operation to a select query for this pattern.\n * @param algebraFactory The algebra factory.\n * @param {Algebra.Operation} operation A query operation.\n * @param {RDF.Variable[]} variables The variables in scope for the operation.\n * @return {string} A select query string.\n */\n public operationToSelectQuery(\n algebraFactory: AlgebraFactory,\n operation: Algebra.Operation,\n variables: RDF.Variable[],\n ): Promise<string> {\n return this.operationToQuery(algebraFactory.createProject(operation, variables));\n }\n\n /**\n * Convert an operation to a count query for the number of matching triples for this pattern.\n * @param dataFactory The data factory.\n * @param algebraFactory The algebra factory.\n * @param {Algebra.Operation} operation A query operation.\n * @return {string} A count query string.\n */\n public operationToCountQuery(\n dataFactory: ComunicaDataFactory,\n algebraFactory: AlgebraFactory,\n operation: Algebra.Operation,\n ): Promise<string> {\n return this.operationToQuery(algebraFactory.createProject(\n algebraFactory.createExtend(\n algebraFactory.createGroup(\n operation,\n [],\n [ algebraFactory.createBoundAggregate(\n dataFactory.variable('var0'),\n 'count',\n algebraFactory.createWildcardExpression(),\n false,\n ) ],\n ),\n dataFactory.variable('count'),\n algebraFactory.createTermExpression(dataFactory.variable('var0')),\n ),\n [ dataFactory.variable('count') ],\n ));\n }\n\n /**\n * Convert an operation to a query for this pattern.\n * @param {Algebra.Operation} operation A query operation.\n * @return {string} A query string.\n */\n public async operationToQuery(operation: Algebra.Operation): Promise<string> {\n return (await this.mediatorQuerySerialize.mediate({\n queryFormat: { language: 'sparql', version: '1.2' },\n operation,\n newlines: false,\n indentWidth: 0,\n context: this.context,\n })).query;\n }\n\n /**\n * Check if the given operation may produce undefined values.\n * @param operation\n */\n public static getOperationUndefs(operation: Algebra.Operation): RDF.Variable[] {\n const variables: RDF.Variable[] = [];\n algebraUtils.visitOperation(operation, {\n [Algebra.Types.LEFT_JOIN]: { preVisitor: (subOperation) => {\n const left = algebraUtils.inScopeVariables(subOperation.input[0]);\n const right = algebraUtils.inScopeVariables(subOperation.input[1]);\n for (const varRight of right) {\n if (!left.some(varLeft => varLeft.equals(varRight))) {\n variables.push(varRight);\n }\n }\n return { continue: false };\n } },\n [Algebra.Types.VALUES]: { preVisitor: (values) => {\n for (const variable of values.variables) {\n if (values.bindings.some(bindings => !(variable.value in bindings))) {\n variables.push(variable);\n }\n }\n return { continue: false };\n } },\n [Algebra.Types.UNION]: { preVisitor: (union) => {\n // Determine variables in scope of the union branches that are not occurring in every branch\n const scopedVariables = union.input.map(op => algebraUtils.inScopeVariables(op));\n for (const variable of uniqTerms(scopedVariables.flat())) {\n if (!scopedVariables.every(input => input.some(inputVar => inputVar.equals(variable)))) {\n variables.push(variable);\n }\n }\n return {};\n } },\n });\n return uniqTerms(variables);\n }\n\n /**\n * Send a SPARQL query to a SPARQL endpoint and retrieve its bindings as a stream.\n * @param {string} endpoint A SPARQL endpoint URL.\n * @param {string} query A SPARQL query string.\n * @param {RDF.Variable[]} variables The expected variables.\n * @param {IActionContext} context The source context.\n * @param undefVariables Variables that may have undefs.\n * @return {BindingsStream} A stream of bindings.\n */\n public async queryBindingsRemote(\n endpoint: string,\n query: string,\n variables: RDF.Variable[],\n context: IActionContext,\n undefVariables: RDF.Variable[],\n ): Promise<BindingsStream> {\n // Index undef variables\n const undefVariablesSet = new Set(undefVariables.map(v => v.value));\n\n this.lastSourceContext = this.context.merge(context);\n const rawStream = await this.endpointFetcher.fetchBindings(endpoint, query);\n\n const wrapped = wrap<any>(rawStream, { autoStart: false, maxBufferSize: Number.POSITIVE_INFINITY });\n return wrapped.map<RDF.Bindings>((rawData: Record<string, RDF.Term>) => {\n const bindings = variables.map((variable) => {\n const value = rawData[`?${variable.value}`];\n if (!undefVariablesSet.has(variable.value) && !value) {\n Actor.getContextLogger(this.context)?.warn(`The endpoint ${endpoint} failed to provide a binding for ${variable.value}.`);\n }\n return <[RDF.Variable, RDF.Term]>[ variable, value ];\n }).filter(([ _, v ]) => Boolean(v));\n return this.bindingsFactory.bindings(bindings);\n });\n }\n\n public toString(): string {\n return `QuerySourceSparql(${this.url})`;\n }\n}\n"]}
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@comunica/actor-query-source-identify-hypermedia-sparql",
3
- "version": "5.1.0",
3
+ "version": "5.1.2",
4
4
  "description": "A sparql query-source-identify-hypermedia actor",
5
5
  "lsd:module": true,
6
6
  "license": "MIT",
@@ -58,5 +58,5 @@
58
58
  "lru-cache": "^11.2.2",
59
59
  "rdf-terms": "^2.0.0"
60
60
  },
61
- "gitHead": "e13930973fd305fd6b233e2535ed4e636de7ebeb"
61
+ "gitHead": "4231cf8254902322f6144a42233dc3fbcc4baec2"
62
62
  }