@complat/react-spectra-editor 1.7.0 → 1.8.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +28 -0
- package/LICENSE +21 -662
- package/README.md +5 -0
- package/dist/__tests__/fixtures/lc_ms_jcamp.js +2329 -0
- package/dist/__tests__/fixtures/lc_ms_jcamp_2.js +2874 -0
- package/dist/__tests__/fixtures/lc_ms_jcamp_mz_chemstation.js +3242 -0
- package/dist/__tests__/fixtures/lc_ms_jcamp_tic_chemstation.js +854 -0
- package/dist/__tests__/fixtures/lc_ms_jcamp_tic_neg.js +1233 -0
- package/dist/__tests__/fixtures/lc_ms_jcamp_tic_pos.js +1233 -0
- package/dist/__tests__/fixtures/lc_ms_jcamp_uvvis.js +48908 -0
- package/dist/__tests__/fixtures/lc_ms_jcamp_uvvis_chemstation.js +15424 -0
- package/dist/__tests__/units/components/cmd_bar/r05_submit_btn.test.js +158 -3
- package/dist/__tests__/units/components/d3_line_rect.test.js +85 -0
- package/dist/__tests__/units/components/d3_multi/multi_focus.test.js +43 -0
- package/dist/__tests__/units/components/hplc_viewer.test.js +123 -0
- package/dist/__tests__/units/components/panel/info.test.js +55 -15
- package/dist/__tests__/units/features/lc-ms/parsing/lcmsCategory.test.js +73 -0
- package/dist/__tests__/units/features/lc-ms/submit/peaks.test.js +310 -0
- package/dist/actions/curve.js +5 -2
- package/dist/actions/hplc_ms.js +66 -0
- package/dist/actions/integration.js +17 -2
- package/dist/actions/ui.js +39 -11
- package/dist/app.js +21 -8
- package/dist/components/cmd_bar/01_viewer.js +15 -11
- package/dist/components/cmd_bar/03_peak.js +25 -16
- package/dist/components/cmd_bar/04_integration.js +116 -17
- package/dist/components/cmd_bar/08_peak_group.js +83 -0
- package/dist/components/cmd_bar/collapsible_toolbar_group.js +101 -0
- package/dist/components/cmd_bar/common.js +4 -3
- package/dist/components/cmd_bar/index.js +76 -18
- package/dist/components/cmd_bar/r01_layout.js +6 -0
- package/dist/components/cmd_bar/r02_scan.js +15 -11
- package/dist/components/cmd_bar/r03_threshold.js +19 -3
- package/dist/components/cmd_bar/r04_submit.js +61 -6
- package/dist/components/cmd_bar/r05_submit_btn.js +60 -13
- package/dist/components/cmd_bar/r06_predict_btn.js +4 -4
- package/dist/components/cmd_bar/r07_wavelength_btn.js +10 -9
- package/dist/components/cmd_bar/r09_detector.js +2 -2
- package/dist/components/cmd_bar/tri_btn.js +4 -1
- package/dist/components/common/draw.js +6 -5
- package/dist/components/d3_line/index.js +70 -15
- package/dist/components/d3_line/line_focus.js +104 -67
- package/dist/components/d3_line_rect/index.js +836 -0
- package/dist/components/d3_line_rect/line_focus.js +526 -0
- package/dist/components/d3_line_rect/multi_focus.js +433 -0
- package/dist/components/d3_line_rect/rect_focus.js +247 -0
- package/dist/components/d3_multi/index.js +154 -163
- package/dist/components/d3_multi/multi_focus.js +117 -68
- package/dist/components/d3_rect/index.js +6 -0
- package/dist/components/d3_rect/rect_focus.js +17 -5
- package/dist/components/hplc_viewer.js +169 -0
- package/dist/components/lc_ms_uv_tools_bar.js +175 -0
- package/dist/components/multi_jcamps_viewer.js +17 -5
- package/dist/components/panel/compare.js +84 -62
- package/dist/components/panel/cyclic_voltamery_data.js +15 -14
- package/dist/components/panel/graph_selection.js +32 -30
- package/dist/components/panel/index.js +28 -22
- package/dist/components/panel/info.js +90 -31
- package/dist/constants/action_type.js +23 -2
- package/dist/constants/list_graph.js +16 -0
- package/dist/constants/list_layout.js +2 -1
- package/dist/constants/list_ui.js +5 -2
- package/dist/features/lc-ms/entities/extractEntityLCMS.js +187 -0
- package/dist/features/lc-ms/parsing/chemstation.js +108 -0
- package/dist/features/lc-ms/parsing/index.js +46 -0
- package/dist/features/lc-ms/parsing/lcmsCategory.js +44 -0
- package/dist/features/lc-ms/parsing/lcmsJcampInfo.js +18 -0
- package/dist/features/lc-ms/parsing/lcmsMsPage.js +241 -0
- package/dist/features/lc-ms/parsing/pageValue.js +27 -0
- package/dist/features/lc-ms/submit/index.js +24 -0
- package/dist/features/lc-ms/submit/peaks.js +66 -0
- package/dist/features/lc-ms/ui/wavelengthSelect.js +54 -0
- package/dist/fn.js +4 -1
- package/dist/helpers/brush.js +74 -19
- package/dist/helpers/calc.js +4 -2
- package/dist/helpers/cfg.js +5 -4
- package/dist/helpers/chem.js +449 -71
- package/dist/helpers/compass.js +181 -17
- package/dist/helpers/extractEntityLCMS.js +24 -0
- package/dist/helpers/extractParams.js +118 -33
- package/dist/helpers/extractPeaksEdit.js +29 -9
- package/dist/helpers/format.js +189 -4
- package/dist/helpers/init.js +25 -5
- package/dist/helpers/integration.js +130 -17
- package/dist/helpers/integration_draft.js +43 -0
- package/dist/helpers/integration_focus.js +155 -0
- package/dist/helpers/integration_jcamp.js +68 -0
- package/dist/helpers/integration_split.js +202 -0
- package/dist/helpers/mount.js +8 -1
- package/dist/helpers/sweep.js +39 -0
- package/dist/index.js +284 -26
- package/dist/layer_content.js +17 -3
- package/dist/layer_init.js +124 -14
- package/dist/layer_prism.js +31 -5
- package/dist/reducers/index.js +3 -1
- package/dist/reducers/reducer_curve.js +54 -36
- package/dist/reducers/reducer_hplc_ms/hydrate.js +289 -0
- package/dist/reducers/reducer_hplc_ms/index.js +122 -0
- package/dist/reducers/reducer_hplc_ms/persistence.js +74 -0
- package/dist/reducers/reducer_hplc_ms/tic.js +70 -0
- package/dist/reducers/reducer_hplc_ms/utils.js +70 -0
- package/dist/reducers/reducer_hplc_ms/uvvis.js +377 -0
- package/dist/reducers/reducer_integration.js +265 -7
- package/dist/reducers/reducer_layout.js +1 -1
- package/dist/reducers/reducer_submit.js +2 -1
- package/dist/reducers/reducer_ui.js +149 -13
- package/dist/reducers/undo_redo_config.js +2 -2
- package/dist/sagas/saga_lcms_ui.js +85 -0
- package/dist/sagas/saga_ui.js +177 -74
- package/dist/setupTests.js +5 -5
- package/package.json +10 -7
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"use strict";
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var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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Object.defineProperty(exports, "__esModule", {
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value: true
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});
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exports.default = void 0;
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var _init = require("../../helpers/init");
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var _mount = require("../../helpers/mount");
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var _brush = _interopRequireDefault(require("../../helpers/brush"));
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var _compass = require("../../helpers/compass");
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var _list_layout = require("../../constants/list_layout");
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var _list_graph = require("../../constants/list_graph");
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var _calc = require("../../helpers/calc");
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var _focus = require("../../helpers/focus");
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var _cfg = _interopRequireDefault(require("../../helpers/cfg"));
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var _format = _interopRequireDefault(require("../../helpers/format"));
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var _integration = require("../../helpers/integration");
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var _list_ui = require("../../constants/list_ui");
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/* eslint-disable prefer-object-spread, no-mixed-operators */
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const d3 = require('d3');
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class LineFocus {
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constructor(props) {
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const {
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W,
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H,
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clickUiTargetAct,
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selectUiSweepAct,
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scrollUiWheelAct,
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graphIndex,
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uiSt
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} = props;
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this.graphIndex = graphIndex;
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this.uiSt = uiSt;
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this.rootKlass = `.${_list_graph.LIST_ROOT_SVG_GRAPH.LINE}`;
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this.margin = {
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t: 5,
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b: 40,
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l: 60,
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r: 5
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};
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this.w = W - this.margin.l - this.margin.r;
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this.h = H - this.margin.t - this.margin.b;
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this.clickUiTargetAct = clickUiTargetAct;
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this.selectUiSweepAct = selectUiSweepAct;
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this.scrollUiWheelAct = scrollUiWheelAct;
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this.brush = d3.brush();
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this.brushX = d3.brushX();
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this.axis = null;
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this.path = null;
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this.grid = null;
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this.tags = null;
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this.data = [];
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this.tTrEndPts = null;
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this.root = null;
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this.svg = null;
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this.axisCall = (0, _init.InitAxisCall)(5);
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this.pathCall = null;
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this.tip = null;
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this.factor = 0.125;
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this.currentExtent = null;
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this.shouldUpdate = {};
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this.layout = _list_layout.LIST_LAYOUT.H1;
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this.getShouldUpdate = this.getShouldUpdate.bind(this);
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this.resetShouldUpdate = this.resetShouldUpdate.bind(this);
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this.setTip = this.setTip.bind(this);
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this.setDataParams = this.setDataParams.bind(this);
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this.create = this.create.bind(this);
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this.update = this.update.bind(this);
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this.setConfig = this.setConfig.bind(this);
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this.drawLine = this.drawLine.bind(this);
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this.drawGrid = this.drawGrid.bind(this);
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this.onClickTarget = this.onClickTarget.bind(this);
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this.drawAUC = this.drawAUC.bind(this);
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this.drawInteg = this.drawInteg.bind(this);
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this.isFirefox = typeof InstallTrigger !== 'undefined';
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}
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getShouldUpdate(hplcMsSt) {
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const {
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prevXt,
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prevYt,
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prevLySt,
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prevItSt,
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prevTePt,
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prevData,
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prevDataSig,
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prevIntegrationSig,
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prevSpectrumKey
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} = this.shouldUpdate;
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const {
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xt,
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yt
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} = (0, _compass.TfRescale)(this);
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const sameXY = xt(1.1) === prevXt && prevYt === yt(1.1);
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const sameLySt = prevLySt === this.layout;
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const sameTePt = prevTePt === this.tTrEndPts.length;
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const currentSpectrum = hplcMsSt?.uvvis?.currentSpectrum;
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const sameItSt = prevItSt === currentSpectrum?.integrations?.length;
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const sameData = prevData === this.data.length;
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const firstPt = this.data[0];
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const lastPt = this.data[this.data.length - 1];
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const dataSig = `${this.data.length}-${firstPt?.y ?? ''}-${lastPt?.y ?? ''}`;
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const sameDataSig = prevDataSig === dataSig;
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const spectrumKey = currentSpectrum?.pageValue ?? hplcMsSt?.uvvis?.selectedWaveLength ?? '';
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const sameSpectrumKey = prevSpectrumKey === spectrumKey;
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const integrations = currentSpectrum?.integrations || [];
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const firstIntegration = integrations[0];
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const lastIntegration = integrations[integrations.length - 1];
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const integrationSig = `${integrations.length}-${firstIntegration?.xL ?? ''}-${firstIntegration?.xU ?? ''}-${lastIntegration?.xL ?? ''}-${lastIntegration?.xU ?? ''}-${currentSpectrum?.refArea ?? ''}-${currentSpectrum?.refFactor ?? ''}`;
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const sameIntegrationSig = prevIntegrationSig === integrationSig;
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this.shouldUpdate = Object.assign({}, this.shouldUpdate, {
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sameXY,
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sameLySt,
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// eslint-disable-line
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sameTePt,
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sameData,
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sameItSt,
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sameDataSig,
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sameIntegrationSig,
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sameSpectrumKey,
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// eslint-disable-line
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dataSig,
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integrationSig,
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spectrumKey // eslint-disable-line
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});
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}
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resetShouldUpdate(hplcMsSt) {
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const {
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yt
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} = (0, _compass.TfRescale)(this);
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const prevXt = xt(1.1);
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const prevYt = yt(1.1);
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const prevTePt = this.tTrEndPts.length;
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const prevData = this.data.length;
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const prevLySt = this.layout;
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const currentSpectrum = hplcMsSt?.uvvis?.currentSpectrum;
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const prevItSt = currentSpectrum?.integrations?.length;
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const firstPt = this.data[0];
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const lastPt = this.data[this.data.length - 1];
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const prevDataSig = `${this.data.length}-${firstPt?.y ?? ''}-${lastPt?.y ?? ''}`;
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const spectrumKey = currentSpectrum?.pageValue ?? hplcMsSt?.uvvis?.selectedWaveLength ?? '';
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const integrations = currentSpectrum?.integrations || [];
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const firstIntegration = integrations[0];
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const lastIntegration = integrations[integrations.length - 1];
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const prevIntegrationSig = `${integrations.length}-${firstIntegration?.xL ?? ''}-${firstIntegration?.xU ?? ''}-${lastIntegration?.xL ?? ''}-${lastIntegration?.xU ?? ''}-${currentSpectrum?.refArea ?? ''}-${currentSpectrum?.refFactor ?? ''}`;
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this.shouldUpdate = Object.assign({}, this.shouldUpdate, {
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prevYt,
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prevLySt,
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// eslint-disable-line
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prevTePt,
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prevData,
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prevItSt,
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prevDataSig,
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prevIntegrationSig,
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prevSpectrumKey: spectrumKey // eslint-disable-line
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});
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}
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setTip() {
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this.tip = (0, _init.InitTip)();
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this.root.call(this.tip);
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}
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setDataParams(data, tTrEndPts, layout, editPeakSt) {
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this.data = [...data];
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this.tTrEndPts = tTrEndPts;
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if (layout) {
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this.layout = layout;
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}
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this.editPeakSt = editPeakSt;
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this.xOnlyBrush = this.layout === _list_layout.LIST_LAYOUT.LC_MS;
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}
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updatePathCall(xt, yt) {
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this.pathCall = d3.line().x(d => xt(d.x)).y(d => yt(d.y));
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}
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setConfig(sweepExtentSt) {
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// Domain Calculate
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let {
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yExtent
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} = sweepExtentSt || {
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xExtent: false,
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yExtent: false
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};
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if (!xExtent) {
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const xes = d3.extent(this.data, d => d.x).sort((a, b) => a - b);
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xExtent = {
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xL: xes[0],
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xU: xes[1]
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};
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}
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if (!yExtent) {
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const btm = d3.min(this.data, d => d.y);
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const top = d3.max(this.data, d => d.y);
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const height = top - btm;
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yExtent = {
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yL: btm - this.factor * height,
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yU: top + this.factor * height
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};
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}
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this.scales.x.domain([xExtent.xL, xExtent.xU]);
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this.scales.y.domain([yExtent.yL, yExtent.yU]);
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// rescale for zoom
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const {
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yt
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} = (0, _compass.TfRescale)(this);
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// Axis Call
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this.axisCall.x.scale(xt);
|
|
213
|
+
this.axisCall.y.scale(yt);
|
|
214
|
+
this.currentExtent = {
|
|
215
|
+
xExtent,
|
|
216
|
+
yExtent
|
|
217
|
+
};
|
|
218
|
+
}
|
|
219
|
+
drawLine() {
|
|
220
|
+
if (!this.path) return;
|
|
221
|
+
const {
|
|
222
|
+
sameXY,
|
|
223
|
+
sameDataSig
|
|
224
|
+
} = this.shouldUpdate;
|
|
225
|
+
if (sameXY && sameDataSig) return;
|
|
226
|
+
const {
|
|
227
|
+
xt,
|
|
228
|
+
yt
|
|
229
|
+
} = (0, _compass.TfRescale)(this);
|
|
230
|
+
this.updatePathCall(xt, yt);
|
|
231
|
+
this.path.attr('d', this.pathCall(this.data));
|
|
232
|
+
}
|
|
233
|
+
drawGrid() {
|
|
234
|
+
const {
|
|
235
|
+
sameXY
|
|
236
|
+
} = this.shouldUpdate;
|
|
237
|
+
if (sameXY || !this.grid || !this.axisCall) return;
|
|
238
|
+
if (this.grid.x && this.axisCall.x) {
|
|
239
|
+
this.grid.x.call(this.axisCall.x.tickSize(-this.h, 0, 0)).selectAll('line').attr('stroke', '#ddd').attr('stroke-opacity', 0.6).attr('fill', 'none');
|
|
240
|
+
}
|
|
241
|
+
if (this.grid.y && this.axisCall.y) {
|
|
242
|
+
this.grid.y.call(this.axisCall.y.tickSize(-this.w, 0, 0)).selectAll('line').attr('stroke', '#ddd').attr('stroke-opacity', 0.6).attr('fill', 'none');
|
|
243
|
+
}
|
|
244
|
+
}
|
|
245
|
+
drawPageMarker(hplcMsSt) {
|
|
246
|
+
if (!this.root || !_format.default.isLCMsLayout(this.layout)) return;
|
|
247
|
+
const currentPageValue = hplcMsSt?.tic?.currentPageValue;
|
|
248
|
+
const hasValue = Number.isFinite(currentPageValue);
|
|
249
|
+
const marker = this.root.selectAll('.uvvis-page-marker').data(hasValue ? [currentPageValue] : []);
|
|
250
|
+
marker.exit().remove();
|
|
251
|
+
if (!hasValue) return;
|
|
252
|
+
const {
|
|
253
|
+
xt
|
|
254
|
+
} = (0, _compass.TfRescale)(this);
|
|
255
|
+
marker.enter().append('line').attr('class', 'uvvis-page-marker').attr('stroke', 'red').attr('stroke-width', 1).attr('stroke-opacity', 0.8).merge(marker).attr('x1', xt(currentPageValue)).attr('x2', xt(currentPageValue)).attr('y1', 0).attr('y2', this.h);
|
|
256
|
+
}
|
|
257
|
+
onClickTarget(event, data) {
|
|
258
|
+
event.stopPropagation();
|
|
259
|
+
event.preventDefault();
|
|
260
|
+
if (_format.default.isLCMsLayout(this.layout) && this.graphIndex === 0 && this.uiSt?.sweepType === _list_ui.LIST_UI_SWEEP_TYPE.PEAK_GROUP_SELECT) {
|
|
261
|
+
return;
|
|
262
|
+
}
|
|
263
|
+
const onPeak = true;
|
|
264
|
+
this.clickUiTargetAct(data, onPeak);
|
|
265
|
+
}
|
|
266
|
+
drawAUC(stack) {
|
|
267
|
+
const {
|
|
268
|
+
xt,
|
|
269
|
+
yt
|
|
270
|
+
} = (0, _compass.TfRescale)(this);
|
|
271
|
+
const auc = this.tags.aucPath.selectAll('path').data(stack, d => (0, _focus.itgIdTag)(d));
|
|
272
|
+
auc.exit().attr('class', 'exit').remove();
|
|
273
|
+
const integCurve = border => {
|
|
274
|
+
const {
|
|
275
|
+
xL,
|
|
276
|
+
xU
|
|
277
|
+
} = border.xExtent;
|
|
278
|
+
const ps = this.data.filter(d => d.x > xL && d.x < xU);
|
|
279
|
+
if (!ps[0]) return null;
|
|
280
|
+
const point1 = ps[0];
|
|
281
|
+
const point2 = ps[ps.length - 1];
|
|
282
|
+
const slope = (0, _calc.calcSlope)(point1.x, point1.y, point2.x, point2.y);
|
|
283
|
+
let lastDY = point1.y;
|
|
284
|
+
return d3.area().x(d => xt(d.x)).y0((d, index) => {
|
|
285
|
+
if (index > 0) {
|
|
286
|
+
const lastD = ps[index - 1];
|
|
287
|
+
const y = slope * (d.x - lastD.x) + lastDY;
|
|
288
|
+
lastDY = y;
|
|
289
|
+
return yt(y);
|
|
290
|
+
}
|
|
291
|
+
return yt(0);
|
|
292
|
+
}).y1(d => yt(d.y))(ps);
|
|
293
|
+
};
|
|
294
|
+
auc.enter().append('path').attr('class', 'auc').attr('fill', 'red').attr('stroke', 'none').attr('fill-opacity', 0.2).attr('stroke-width', 2).merge(auc).attr('d', d => integCurve(d)).attr('id', d => `auc${(0, _focus.itgIdTag)(d)}`).on('mouseover', function handleAucMouseover() {
|
|
295
|
+
d3.select(this).attr('stroke', 'blue').style('fill', 'blue');
|
|
296
|
+
}).on('mouseout', function handleAucMouseout() {
|
|
297
|
+
d3.select(this).attr('stroke', 'none').style('fill', 'red').style('fill-opacity', 0.2);
|
|
298
|
+
}).on('click', (event, d) => this.onClickTarget(event, d));
|
|
299
|
+
}
|
|
300
|
+
drawInteg(hplcMsSt) {
|
|
301
|
+
if (!this.tags || !this.tags.igbPath || !this.tags.igcPath || !this.tags.igtPath) return;
|
|
302
|
+
const {
|
|
303
|
+
sameXY,
|
|
304
|
+
sameLySt,
|
|
305
|
+
sameItSt,
|
|
306
|
+
sameData,
|
|
307
|
+
sameIntegrationSig,
|
|
308
|
+
sameSpectrumKey
|
|
309
|
+
} = this.shouldUpdate;
|
|
310
|
+
if (sameXY && sameLySt && sameItSt && sameData && sameIntegrationSig && sameSpectrumKey) return;
|
|
311
|
+
const isDisable = _cfg.default.btnCmdIntg(this.layout);
|
|
312
|
+
const ignoreRef = _format.default.isLCMsLayout(this.layout);
|
|
313
|
+
const currentSpectrum = hplcMsSt?.uvvis?.currentSpectrum;
|
|
314
|
+
const currentIntegrations = currentSpectrum?.integrations || [];
|
|
315
|
+
const currentRefArea = currentSpectrum?.refArea || 0;
|
|
316
|
+
const currentRefFactor = currentSpectrum?.refFactor || 1;
|
|
317
|
+
const igbp = this.tags.igbPath.selectAll('path').data(currentIntegrations, d => (0, _focus.itgIdTag)(d));
|
|
318
|
+
igbp.exit().attr('class', 'exit').remove();
|
|
319
|
+
const igcp = this.tags.igcPath.selectAll('path').data(currentIntegrations, d => (0, _focus.itgIdTag)(d));
|
|
320
|
+
igcp.exit().attr('class', 'exit').remove();
|
|
321
|
+
const igtp = this.tags.igtPath.selectAll('text').data(currentIntegrations, d => (0, _focus.itgIdTag)(d));
|
|
322
|
+
igtp.exit().attr('class', 'exit').remove();
|
|
323
|
+
if (currentIntegrations.length === 0 || isDisable) {
|
|
324
|
+
// remove drawn area under curve
|
|
325
|
+
const auc = this.tags.aucPath.selectAll('path').data(currentIntegrations);
|
|
326
|
+
auc.exit().attr('class', 'exit').remove();
|
|
327
|
+
auc.merge(auc);
|
|
328
|
+
return;
|
|
329
|
+
}
|
|
330
|
+
if (ignoreRef) {
|
|
331
|
+
this.drawAUC(currentIntegrations);
|
|
332
|
+
} else {
|
|
333
|
+
// rescale for zoom
|
|
334
|
+
const {
|
|
335
|
+
xt
|
|
336
|
+
} = (0, _compass.TfRescale)(this);
|
|
337
|
+
const dh = 50;
|
|
338
|
+
const integBar = data => {
|
|
339
|
+
const points = [[xt(data.xL), dh], [xt(data.xL), dh - 10], [xt(data.xL), dh - 5], [xt(data.xU), dh - 5], [xt(data.xU), dh - 10], [xt(data.xU), dh]];
|
|
340
|
+
return d3.line()(points);
|
|
341
|
+
};
|
|
342
|
+
igbp.enter().append('path').attr('class', 'igbp').attr('fill', 'none').attr('stroke', '#228B22').attr('stroke-width', 2).merge(igbp).attr('id', d => `igbp${(0, _focus.itgIdTag)(d)}`).attr('d', d => integBar(d)).on('mouseover', (event, d) => {
|
|
343
|
+
d3.select(`#igbp${(0, _focus.itgIdTag)(d)}`).attr('stroke', 'blue');
|
|
344
|
+
d3.select(`#igbc${(0, _focus.itgIdTag)(d)}`).attr('stroke', 'blue');
|
|
345
|
+
d3.select(`#igtp${(0, _focus.itgIdTag)(d)}`).style('fill', 'blue');
|
|
346
|
+
}).on('mouseout', (event, d) => {
|
|
347
|
+
d3.select(`#igbp${(0, _focus.itgIdTag)(d)}`).attr('stroke', '#228B22');
|
|
348
|
+
d3.select(`#igbc${(0, _focus.itgIdTag)(d)}`).attr('stroke', '#228B22');
|
|
349
|
+
d3.select(`#igtp${(0, _focus.itgIdTag)(d)}`).style('fill', '#228B22');
|
|
350
|
+
}).on('click', (event, d) => this.onClickTarget(event, d));
|
|
351
|
+
const integCurve = border => {
|
|
352
|
+
const {
|
|
353
|
+
xL,
|
|
354
|
+
xU
|
|
355
|
+
} = border;
|
|
356
|
+
const ps = this.data.filter(d => d.x > xL && d.x < xU);
|
|
357
|
+
const kMax = this.data[this.data.length - 1].k;
|
|
358
|
+
if (!ps[0]) return null;
|
|
359
|
+
const kRef = ps[0].k;
|
|
360
|
+
if (!this.reverseXAxis(this.layout)) {
|
|
361
|
+
return d3.line().x(d => xt(d.x)).y(d => 100 - (kRef - d.k) * 400 / kMax)(ps);
|
|
362
|
+
}
|
|
363
|
+
return d3.line().x(d => xt(d.x)).y(d => 300 - (d.k - kRef) * 400 / kMax)(ps);
|
|
364
|
+
};
|
|
365
|
+
igcp.enter().append('path').attr('class', 'igcp').attr('fill', 'none').attr('stroke', '#228B22').attr('stroke-width', 2).merge(igcp).attr('id', d => `igbc${(0, _focus.itgIdTag)(d)}`).attr('d', d => integCurve(d)).on('mouseover', (event, d) => {
|
|
366
|
+
d3.select(`#igbp${(0, _focus.itgIdTag)(d)}`).attr('stroke', 'blue');
|
|
367
|
+
d3.select(`#igbc${(0, _focus.itgIdTag)(d)}`).attr('stroke', 'blue');
|
|
368
|
+
d3.select(`#igtp${(0, _focus.itgIdTag)(d)}`).style('fill', 'blue');
|
|
369
|
+
}).on('mouseout', (event, d) => {
|
|
370
|
+
d3.select(`#igbp${(0, _focus.itgIdTag)(d)}`).attr('stroke', '#228B22');
|
|
371
|
+
d3.select(`#igbc${(0, _focus.itgIdTag)(d)}`).attr('stroke', '#228B22');
|
|
372
|
+
d3.select(`#igtp${(0, _focus.itgIdTag)(d)}`).style('fill', '#228B22');
|
|
373
|
+
}).on('click', (event, d) => this.onClickTarget(event, d));
|
|
374
|
+
igtp.enter().append('text').attr('class', 'igtp').attr('font-family', 'Helvetica').style('font-size', '12px').attr('fill', '#228B22').style('text-anchor', 'middle').merge(igtp).attr('id', d => `igtp${(0, _focus.itgIdTag)(d)}`).text(d => (0, _integration.calcArea)(d, currentRefArea, currentRefFactor, ignoreRef)).attr('transform', d => {
|
|
375
|
+
const x = xt((d.xL + d.xU) / 2);
|
|
376
|
+
const y = dh - 12;
|
|
377
|
+
return `translate(${x}, ${y})`;
|
|
378
|
+
}).on('mouseover', (event, d) => {
|
|
379
|
+
d3.select(`#igbp${(0, _focus.itgIdTag)(d)}`).attr('stroke', 'blue');
|
|
380
|
+
d3.select(`#igbc${(0, _focus.itgIdTag)(d)}`).attr('stroke', 'blue');
|
|
381
|
+
d3.select(`#igtp${(0, _focus.itgIdTag)(d)}`).style('fill', 'blue');
|
|
382
|
+
}).on('mouseout', (event, d) => {
|
|
383
|
+
d3.select(`#igbp${(0, _focus.itgIdTag)(d)}`).attr('stroke', '#228B22');
|
|
384
|
+
d3.select(`#igbc${(0, _focus.itgIdTag)(d)}`).attr('stroke', '#228B22');
|
|
385
|
+
d3.select(`#igtp${(0, _focus.itgIdTag)(d)}`).style('fill', '#228B22');
|
|
386
|
+
}).on('click', (event, d) => this.onClickTarget(event, d));
|
|
387
|
+
}
|
|
388
|
+
}
|
|
389
|
+
mergedPeaks(hplcMsSt) {
|
|
390
|
+
const currentSpectrum = hplcMsSt?.uvvis?.currentSpectrum;
|
|
391
|
+
if (!currentSpectrum || !currentSpectrum.peaks) return [];
|
|
392
|
+
return currentSpectrum.peaks;
|
|
393
|
+
}
|
|
394
|
+
drawPeaks(hplcMsSt) {
|
|
395
|
+
if (!this.tags || !this.tags.pPath) return;
|
|
396
|
+
const {
|
|
397
|
+
sameXY,
|
|
398
|
+
sameEpSt,
|
|
399
|
+
sameDtPk,
|
|
400
|
+
sameSfPk
|
|
401
|
+
} = this.shouldUpdate;
|
|
402
|
+
if (sameXY && sameEpSt && sameDtPk && sameSfPk) return;
|
|
403
|
+
const {
|
|
404
|
+
xt,
|
|
405
|
+
yt
|
|
406
|
+
} = (0, _compass.TfRescale)(this);
|
|
407
|
+
const dPks = this.mergedPeaks(hplcMsSt);
|
|
408
|
+
const mpp = this.tags.pPath.selectAll('path').data(dPks);
|
|
409
|
+
mpp.exit().remove();
|
|
410
|
+
const linePath = [{
|
|
411
|
+
x: -0.5,
|
|
412
|
+
y: 10
|
|
413
|
+
}, {
|
|
414
|
+
x: -0.5,
|
|
415
|
+
y: -20
|
|
416
|
+
}, {
|
|
417
|
+
x: 0.5,
|
|
418
|
+
y: -20
|
|
419
|
+
}, {
|
|
420
|
+
x: 0.5,
|
|
421
|
+
y: 10
|
|
422
|
+
}];
|
|
423
|
+
const lineSymbol = d3.line().x(d => d.x).y(d => d.y)(linePath);
|
|
424
|
+
mpp.enter().append('path').attr('d', lineSymbol).attr('class', 'enter-peak').attr('fill', 'red').attr('stroke', 'pink').attr('stroke-width', 3).attr('stroke-opacity', 0.0).merge(mpp).attr('id', d => `mpp${Math.round(1000 * d.x)}`).attr('transform', d => `translate(${xt(d.x)}, ${yt(d.y)})`).on('mouseover', (event, d) => {
|
|
425
|
+
d3.select(`#mpp${Math.round(1000 * d.x)}`).attr('stroke-opacity', '1.0');
|
|
426
|
+
const tipParams = {
|
|
427
|
+
d,
|
|
428
|
+
layout: this.layout
|
|
429
|
+
};
|
|
430
|
+
this.tip.show(tipParams, event.target);
|
|
431
|
+
}).on('mouseout', (event, d) => {
|
|
432
|
+
d3.select(`#mpp${Math.round(1000 * d.x)}`).attr('stroke-opacity', '0.0');
|
|
433
|
+
const tipParams = {
|
|
434
|
+
d,
|
|
435
|
+
layout: this.layout
|
|
436
|
+
};
|
|
437
|
+
this.tip.hide(tipParams, event.target);
|
|
438
|
+
}).on('click', (event, d) => this.onClickTarget(event, d));
|
|
439
|
+
if (_format.default.isLCMsLayout(this.layout)) {
|
|
440
|
+
const bpTxt = this.tags.bpTxt.selectAll('text').data(dPks);
|
|
441
|
+
bpTxt.exit().remove();
|
|
442
|
+
bpTxt.enter().append('text').attr('class', 'peak-text').attr('font-family', 'Helvetica').style('font-size', '12px').attr('fill', '#228B22').style('text-anchor', 'middle').merge(bpTxt).attr('id', d => `txt${Math.round(1000 * d.x)}`).text(d => d.x.toFixed(2)).attr('transform', d => `translate(${xt(d.x)}, ${yt(d.y) - 25})`).on('click', (event, d) => this.onClickTarget(event, d));
|
|
443
|
+
}
|
|
444
|
+
}
|
|
445
|
+
create({
|
|
446
|
+
filterSeed,
|
|
447
|
+
tTrEndPts,
|
|
448
|
+
layoutSt,
|
|
449
|
+
sweepExtentSt,
|
|
450
|
+
isUiAddIntgSt,
|
|
451
|
+
isUiNoBrushSt,
|
|
452
|
+
hplcMsSt,
|
|
453
|
+
editPeakSt
|
|
454
|
+
}) {
|
|
455
|
+
this.svg = d3.select('.d3Svg');
|
|
456
|
+
(0, _mount.MountMainFrame)(this, 'focus');
|
|
457
|
+
(0, _mount.MountClip)(this);
|
|
458
|
+
this.root = d3.select(this.rootKlass).selectAll('.focus-main');
|
|
459
|
+
if (!this.root || this.root.empty()) return;
|
|
460
|
+
this.scales = (0, _init.InitScale)(this, false);
|
|
461
|
+
this.setTip();
|
|
462
|
+
this.setDataParams(filterSeed, tTrEndPts, layoutSt, editPeakSt);
|
|
463
|
+
(0, _compass.MountCompass)(this);
|
|
464
|
+
this.axis = (0, _mount.MountAxis)(this);
|
|
465
|
+
this.path = (0, _mount.MountPath)(this, 'steelblue');
|
|
466
|
+
this.grid = (0, _mount.MountGrid)(this);
|
|
467
|
+
this.tags = (0, _mount.MountTags)(this);
|
|
468
|
+
(0, _mount.MountAxisLabelX)(this);
|
|
469
|
+
(0, _mount.MountAxisLabelY)(this);
|
|
470
|
+
if (this.data && this.data.length > 0) {
|
|
471
|
+
this.setConfig(sweepExtentSt);
|
|
472
|
+
this.drawLine();
|
|
473
|
+
this.drawPeaks(hplcMsSt);
|
|
474
|
+
this.drawGrid();
|
|
475
|
+
this.drawPageMarker(hplcMsSt);
|
|
476
|
+
this.drawInteg(hplcMsSt);
|
|
477
|
+
}
|
|
478
|
+
(0, _brush.default)(this, isUiAddIntgSt, isUiNoBrushSt);
|
|
479
|
+
this.resetShouldUpdate(hplcMsSt);
|
|
480
|
+
}
|
|
481
|
+
reverseXAxis(layoutSt) {
|
|
482
|
+
return [_list_layout.LIST_LAYOUT.UVVIS, _list_layout.LIST_LAYOUT.HPLC_UVVIS, _list_layout.LIST_LAYOUT.TGA, _list_layout.LIST_LAYOUT.DSC, _list_layout.LIST_LAYOUT.XRD, _list_layout.LIST_LAYOUT.CYCLIC_VOLTAMMETRY, _list_layout.LIST_LAYOUT.CDS, _list_layout.LIST_LAYOUT.DLS_ACF, _list_layout.LIST_LAYOUT.SEC, _list_layout.LIST_LAYOUT.GC, _list_layout.LIST_LAYOUT.EMISSIONS, _list_layout.LIST_LAYOUT.DLS_INTENSITY].indexOf(layoutSt) < 0;
|
|
483
|
+
}
|
|
484
|
+
update({
|
|
485
|
+
filterSeed,
|
|
486
|
+
tTrEndPts,
|
|
487
|
+
layoutSt,
|
|
488
|
+
sweepExtentSt,
|
|
489
|
+
isUiAddIntgSt,
|
|
490
|
+
isUiNoBrushSt,
|
|
491
|
+
uiSt,
|
|
492
|
+
hplcMsSt,
|
|
493
|
+
editPeakSt
|
|
494
|
+
}) {
|
|
495
|
+
this.root = d3.select(this.rootKlass).selectAll('.focus-main');
|
|
496
|
+
this.scales = (0, _init.InitScale)(this, false);
|
|
497
|
+
this.setDataParams(filterSeed, tTrEndPts, layoutSt, editPeakSt);
|
|
498
|
+
this.uiSt = uiSt;
|
|
499
|
+
const isInitialized = !!(this.root && !this.root.empty() && this.path && this.grid && this.tags);
|
|
500
|
+
if (!isInitialized) {
|
|
501
|
+
this.create({
|
|
502
|
+
filterSeed,
|
|
503
|
+
tTrEndPts,
|
|
504
|
+
layoutSt,
|
|
505
|
+
sweepExtentSt,
|
|
506
|
+
isUiAddIntgSt,
|
|
507
|
+
isUiNoBrushSt,
|
|
508
|
+
hplcMsSt,
|
|
509
|
+
editPeakSt
|
|
510
|
+
});
|
|
511
|
+
return;
|
|
512
|
+
}
|
|
513
|
+
if (this.data && this.data.length > 0) {
|
|
514
|
+
this.setConfig(sweepExtentSt);
|
|
515
|
+
this.getShouldUpdate(hplcMsSt);
|
|
516
|
+
this.drawLine();
|
|
517
|
+
this.drawGrid();
|
|
518
|
+
this.drawPageMarker(hplcMsSt);
|
|
519
|
+
this.drawPeaks(hplcMsSt);
|
|
520
|
+
this.drawInteg(hplcMsSt);
|
|
521
|
+
}
|
|
522
|
+
(0, _brush.default)(this, isUiAddIntgSt, isUiNoBrushSt);
|
|
523
|
+
this.resetShouldUpdate(hplcMsSt);
|
|
524
|
+
}
|
|
525
|
+
}
|
|
526
|
+
var _default = exports.default = LineFocus;
|