@complat/react-spectra-editor 0.10.13-alpha.5

package/dist/components/d3_rect/index.js

@@ -0,0 +1,200 @@
+'use strict';
+
+Object.defineProperty(exports, "__esModule", {
+  value: true
+});
+
+var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }();
+
+var _react = require('react');
+
+var _react2 = _interopRequireDefault(_react);
+
+var _reactRedux = require('react-redux');
+
+var _redux = require('redux');
+
+var _propTypes = require('prop-types');
+
+var _propTypes2 = _interopRequireDefault(_propTypes);
+
+var _chem = require('../../helpers/chem');
+
+var _manager = require('../../actions/manager');
+
+var _ui = require('../../actions/ui');
+
+var _rect_focus = require('./rect_focus');
+
+var _rect_focus2 = _interopRequireDefault(_rect_focus);
+
+var _draw = require('../common/draw');
+
+var _list_ui = require('../../constants/list_ui');
+
+function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; }
+
+function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } }
+
+function _possibleConstructorReturn(self, call) { if (!self) { throw new ReferenceError("this hasn't been initialised - super() hasn't been called"); } return call && (typeof call === "object" || typeof call === "function") ? call : self; }
+
+function _inherits(subClass, superClass) { if (typeof superClass !== "function" && superClass !== null) { throw new TypeError("Super expression must either be null or a function, not " + typeof superClass); } subClass.prototype = Object.create(superClass && superClass.prototype, { constructor: { value: subClass, enumerable: false, writable: true, configurable: true } }); if (superClass) Object.setPrototypeOf ? Object.setPrototypeOf(subClass, superClass) : subClass.__proto__ = superClass; }
+
+var W = Math.round(window.innerWidth * 0.90 * 9 / 12); // ROI
+var H = Math.round(window.innerHeight * 0.90 * 0.85); // ROI
+
+var ViewerRect = function (_React$Component) {
+  _inherits(ViewerRect, _React$Component);
+
+  function ViewerRect(props) {
+    _classCallCheck(this, ViewerRect);
+
+    var _this = _possibleConstructorReturn(this, (ViewerRect.__proto__ || Object.getPrototypeOf(ViewerRect)).call(this, props));
+
+    var clickUiTargetAct = props.clickUiTargetAct,
+        selectUiSweepAct = props.selectUiSweepAct,
+        scrollUiWheelAct = props.scrollUiWheelAct;
+
+    _this.rootKlass = '.d3Rect';
+    _this.focus = new _rect_focus2.default({
+      W: W, H: H, clickUiTargetAct: clickUiTargetAct, selectUiSweepAct: selectUiSweepAct, scrollUiWheelAct: scrollUiWheelAct
+    });
+
+    _this.normChange = _this.normChange.bind(_this);
+    return _this;
+  }
+
+  _createClass(ViewerRect, [{
+    key: 'componentDidMount',
+    value: function componentDidMount() {
+      var _props = this.props,
+          seed = _props.seed,
+          peak = _props.peak,
+          cLabel = _props.cLabel,
+          xLabel = _props.xLabel,
+          yLabel = _props.yLabel,
+          feature = _props.feature,
+          tTrEndPts = _props.tTrEndPts,
+          tSfPeaks = _props.tSfPeaks,
+          isHidden = _props.isHidden,
+          sweepExtentSt = _props.sweepExtentSt,
+          isUiAddIntgSt = _props.isUiAddIntgSt,
+          isUiNoBrushSt = _props.isUiNoBrushSt,
+          resetAllAct = _props.resetAllAct;
+
+      (0, _draw.drawDestroy)(this.rootKlass);
+      resetAllAct(feature);
+
+      var filterSeed = seed;
+      var filterPeak = peak;
+
+      (0, _draw.drawMain)(this.rootKlass, W, H);
+      this.focus.create({
+        filterSeed: filterSeed,
+        filterPeak: filterPeak,
+        tTrEndPts: tTrEndPts,
+        tSfPeaks: tSfPeaks,
+        sweepExtentSt: sweepExtentSt,
+        isUiAddIntgSt: isUiAddIntgSt,
+        isUiNoBrushSt: isUiNoBrushSt
+      });
+      (0, _draw.drawLabel)(this.rootKlass, cLabel, xLabel, yLabel);
+      (0, _draw.drawDisplay)(this.rootKlass, isHidden);
+    }
+  }, {
+    key: 'componentDidUpdate',
+    value: function componentDidUpdate(prevProps) {
+      var _props2 = this.props,
+          seed = _props2.seed,
+          peak = _props2.peak,
+          tTrEndPts = _props2.tTrEndPts,
+          tSfPeaks = _props2.tSfPeaks,
+          isHidden = _props2.isHidden,
+          sweepExtentSt = _props2.sweepExtentSt,
+          isUiAddIntgSt = _props2.isUiAddIntgSt,
+          isUiNoBrushSt = _props2.isUiNoBrushSt;
+
+      this.normChange(prevProps);
+
+      var filterSeed = seed;
+      var filterPeak = peak;
+
+      this.focus.update({
+        filterSeed: filterSeed,
+        filterPeak: filterPeak,
+        tTrEndPts: tTrEndPts,
+        tSfPeaks: tSfPeaks,
+        sweepExtentSt: sweepExtentSt,
+        isUiAddIntgSt: isUiAddIntgSt,
+        isUiNoBrushSt: isUiNoBrushSt
+      });
+      (0, _draw.drawDisplay)(this.rootKlass, isHidden);
+    }
+  }, {
+    key: 'componentWillUnmount',
+    value: function componentWillUnmount() {
+      (0, _draw.drawDestroy)(this.rootKlass);
+    }
+  }, {
+    key: 'normChange',
+    value: function normChange(prevProps) {
+      var _props3 = this.props,
+          feature = _props3.feature,
+          resetAllAct = _props3.resetAllAct;
+
+      var oldFeature = prevProps.feature;
+      if (oldFeature !== feature) {
+        resetAllAct(feature);
+      }
+    }
+  }, {
+    key: 'render',
+    value: function render() {
+      return _react2.default.createElement('div', { className: 'd3Rect' });
+    }
+  }]);
+
+  return ViewerRect;
+}(_react2.default.Component);
+
+var mapStateToProps = function mapStateToProps(state, props) {
+  return {
+    seed: (0, _chem.Topic2Seed)(state, props),
+    peak: (0, _chem.Feature2Peak)(state, props),
+    tTrEndPts: (0, _chem.ToThresEndPts)(state, props),
+    tSfPeaks: (0, _chem.ToShiftPeaks)(state, props),
+    sweepExtentSt: state.ui.sweepExtent,
+    isUiAddIntgSt: state.ui.sweepType === _list_ui.LIST_UI_SWEEP_TYPE.INTEGRATION_ADD,
+    isUiNoBrushSt: _list_ui.LIST_NON_BRUSH_TYPES.indexOf(state.ui.sweepType) < 0
+  };
+};
+
+var mapDispatchToProps = function mapDispatchToProps(dispatch) {
+  return (0, _redux.bindActionCreators)({
+    resetAllAct: _manager.resetAll,
+    clickUiTargetAct: _ui.clickUiTarget,
+    selectUiSweepAct: _ui.selectUiSweep,
+    scrollUiWheelAct: _ui.scrollUiWheel
+  }, dispatch);
+};
+
+ViewerRect.propTypes = {
+  seed: _propTypes2.default.array.isRequired,
+  peak: _propTypes2.default.array.isRequired,
+  cLabel: _propTypes2.default.string.isRequired,
+  xLabel: _propTypes2.default.string.isRequired,
+  yLabel: _propTypes2.default.string.isRequired,
+  feature: _propTypes2.default.object.isRequired,
+  tTrEndPts: _propTypes2.default.array.isRequired,
+  tSfPeaks: _propTypes2.default.array.isRequired,
+  sweepExtentSt: _propTypes2.default.object.isRequired,
+  isUiAddIntgSt: _propTypes2.default.bool.isRequired,
+  isUiNoBrushSt: _propTypes2.default.bool.isRequired,
+  resetAllAct: _propTypes2.default.func.isRequired,
+  clickUiTargetAct: _propTypes2.default.func.isRequired,
+  selectUiSweepAct: _propTypes2.default.func.isRequired,
+  scrollUiWheelAct: _propTypes2.default.func.isRequired,
+  isHidden: _propTypes2.default.bool.isRequired
+};
+
+exports.default = (0, _reactRedux.connect)(mapStateToProps, mapDispatchToProps)(ViewerRect);

package/dist/components/d3_rect/rect_focus.js

@@ -0,0 +1,301 @@
+'use strict';
+
+Object.defineProperty(exports, "__esModule", {
+  value: true
+});
+
+var _slicedToArray = function () { function sliceIterator(arr, i) { var _arr = []; var _n = true; var _d = false; var _e = undefined; try { for (var _i = arr[Symbol.iterator](), _s; !(_n = (_s = _i.next()).done); _n = true) { _arr.push(_s.value); if (i && _arr.length === i) break; } } catch (err) { _d = true; _e = err; } finally { try { if (!_n && _i["return"]) _i["return"](); } finally { if (_d) throw _e; } } return _arr; } return function (arr, i) { if (Array.isArray(arr)) { return arr; } else if (Symbol.iterator in Object(arr)) { return sliceIterator(arr, i); } else { throw new TypeError("Invalid attempt to destructure non-iterable instance"); } }; }();
+
+var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }();
+
+var _d2 = require('d3');
+
+var d3 = _interopRequireWildcard(_d2);
+
+var _init = require('../../helpers/init');
+
+var _brush = require('../../helpers/brush');
+
+var _brush2 = _interopRequireDefault(_brush);
+
+var _mount = require('../../helpers/mount');
+
+var _compass = require('../../helpers/compass');
+
+var _converter = require('../../helpers/converter');
+
+var _list_layout = require('../../constants/list_layout');
+
+function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; }
+
+function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } }
+
+function _toConsumableArray(arr) { if (Array.isArray(arr)) { for (var i = 0, arr2 = Array(arr.length); i < arr.length; i++) { arr2[i] = arr[i]; } return arr2; } else { return Array.from(arr); } }
+
+function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } }
+
+var RectFocus = function () {
+  function RectFocus(props) {
+    _classCallCheck(this, RectFocus);
+
+    var W = props.W,
+        H = props.H,
+        clickUiTargetAct = props.clickUiTargetAct,
+        selectUiSweepAct = props.selectUiSweepAct,
+        scrollUiWheelAct = props.scrollUiWheelAct;
+
+
+    this.rootKlass = '.d3Rect';
+    this.margin = {
+      t: 5,
+      b: 40,
+      l: 60,
+      r: 5
+    };
+    this.w = W - this.margin.l - this.margin.r;
+    this.h = H - this.margin.t - this.margin.b;
+    this.clickUiTargetAct = clickUiTargetAct;
+    this.selectUiSweepAct = selectUiSweepAct;
+    this.scrollUiWheelAct = scrollUiWheelAct;
+    this.brush = d3.brush();
+
+    this.axis = null;
+    this.thresLine = null;
+    this.grid = null;
+    this.ref = null;
+    this.ccPattern = null;
+    this.data = [];
+    this.dataPks = [];
+    this.tTrEndPts = null;
+    this.tSfPeaks = null;
+    this.root = null;
+    this.svg = null;
+    this.bars = null;
+    this.scales = (0, _init.InitScale)(this, false);
+    this.axisCall = (0, _init.InitAxisCall)(5);
+    this.pathCall = null;
+    this.tip = null;
+    this.factor = 0.125;
+    this.currentExtent = null;
+    this.layout = _list_layout.LIST_LAYOUT.MS;
+
+    this.setTip = this.setTip.bind(this);
+    this.setDataParams = this.setDataParams.bind(this);
+    this.create = this.create.bind(this);
+    this.update = this.update.bind(this);
+    this.setConfig = this.setConfig.bind(this);
+    this.drawBar = this.drawBar.bind(this);
+    this.drawThres = this.drawThres.bind(this);
+    this.drawGrid = this.drawGrid.bind(this);
+    this.mergedPeaks = this.mergedPeaks.bind(this);
+    this.isFirefox = typeof InstallTrigger !== 'undefined';
+  }
+
+  _createClass(RectFocus, [{
+    key: 'setTip',
+    value: function setTip() {
+      this.tip = (0, _init.InitTip)();
+      this.root.call(this.tip);
+    }
+  }, {
+    key: 'setDataParams',
+    value: function setDataParams(data, peaks, tTrEndPts, tSfPeaks) {
+      this.data = [].concat(_toConsumableArray(data));
+      this.dataPks = [].concat(_toConsumableArray(peaks));
+      this.tTrEndPts = tTrEndPts;
+      this.tSfPeaks = tSfPeaks;
+    }
+  }, {
+    key: 'updatePathCall',
+    value: function updatePathCall(xt, yt) {
+      this.pathCall = d3.line().x(function (d) {
+        return xt(d.x);
+      }).y(function (d) {
+        return yt(d.y);
+      });
+    }
+  }, {
+    key: 'setConfig',
+    value: function setConfig(sweepExtentSt) {
+      // Domain Calculate
+      var _ref = sweepExtentSt || { xExtent: false, yExtent: false },
+          xExtent = _ref.xExtent,
+          yExtent = _ref.yExtent;
+
+      if (!xExtent || !yExtent) {
+        var xes = d3.extent(this.data, function (d) {
+          return d.x;
+        }).sort(function (a, b) {
+          return a - b;
+        });
+        xExtent = { xL: xes[0] - 10, xU: xes[1] + 10 };
+        var btm = 0; // MS baseline is always 0.
+        var top = d3.max(this.data, function (d) {
+          return d.y;
+        });
+        var height = top - btm;
+        yExtent = {
+          yL: btm - this.factor * height,
+          yU: top + this.factor * height
+        };
+      }
+
+      this.scales.x.domain([xExtent.xL, xExtent.xU]);
+      this.scales.y.domain([yExtent.yL, yExtent.yU]);
+
+      // rescale for zoom
+
+      var _TfRescale = (0, _compass.TfRescale)(this),
+          xt = _TfRescale.xt,
+          yt = _TfRescale.yt;
+
+      // Axis Call
+
+
+      this.axisCall.x.scale(xt);
+      this.axisCall.y.scale(yt);
+
+      this.currentExtent = { xExtent: xExtent, yExtent: yExtent };
+    }
+  }, {
+    key: 'posHeight',
+    value: function posHeight(gnd, val) {
+      var h = gnd - val;
+      return h >= 0 ? h : 0;
+    }
+  }, {
+    key: 'barColor',
+    value: function barColor(y, yRef) {
+      return y >= yRef ? 'steelblue' : '#aaa';
+    }
+  }, {
+    key: 'drawBar',
+    value: function drawBar() {
+      var _this = this;
+
+      var _TfRescale2 = (0, _compass.TfRescale)(this),
+          xt = _TfRescale2.xt,
+          yt = _TfRescale2.yt;
+
+      this.updatePathCall(xt, yt);
+
+      var yRef = this.tTrEndPts[0].y;
+
+      var bars = this.bars.selectAll('rect').data(this.data);
+
+      bars.exit().attr('class', 'exit').remove();
+
+      var gnd = yt(0);
+      bars.enter().append('rect').attr('class', 'enter-bar').attr('width', 1.5).merge(bars).attr('fill', function (d) {
+        return _this.barColor(d.y, yRef);
+      }).attr('height', function (d) {
+        return _this.posHeight(gnd, yt(d.y));
+      }).attr('id', function (d) {
+        return 'mpp' + Math.round(1000 * d.x);
+      }).attr('transform', function (d) {
+        return 'translate(' + xt(d.x) + ', ' + yt(d.y) + ')';
+      }).on('mouseover', function (d, i, n) {
+        d3.select('#mpp' + Math.round(1000 * d.x)).attr('stroke-opacity', '1.0');
+        d3.select('#bpt' + Math.round(1000 * d.x)).style('fill', 'blue');
+        var tipParams = { d: d, layout: _this.layout };
+        _this.tip.show(tipParams, n[i]);
+      }).on('mouseout', function (d, i, n) {
+        d3.select('#mpp' + Math.round(1000 * d.x)).attr('stroke-opacity', '1.0');
+        d3.select('#bpt' + Math.round(1000 * d.x)).style('fill', 'red');
+        var tipParams = { d: d, layout: _this.layout };
+        _this.tip.hide(tipParams, n[i]);
+      });
+    }
+  }, {
+    key: 'drawThres',
+    value: function drawThres() {
+      if (this.tTrEndPts.length > 0) {
+        this.thresLine.attr('d', this.pathCall(this.tTrEndPts));
+        this.thresLine.attr('visibility', 'visible');
+      } else {
+        this.thresLine.attr('visibility', 'hidden');
+      }
+    }
+  }, {
+    key: 'drawGrid',
+    value: function drawGrid() {
+      this.grid.x.call(this.axisCall.x.tickSize(-this.h, 0, 0)).selectAll('line').attr('stroke', '#ddd').attr('stroke-opacity', 0.6).attr('fill', 'none');
+      this.grid.y.call(this.axisCall.y.tickSize(-this.w, 0, 0)).selectAll('line').attr('stroke', '#ddd').attr('stroke-opacity', 0.6).attr('fill', 'none');
+    }
+  }, {
+    key: 'mergedPeaks',
+    value: function mergedPeaks(editPeakSt) {
+      if (!editPeakSt) return this.dataPks;
+      this.dataPks = (0, _converter.PksEdit)(this.dataPks, editPeakSt);
+      return this.dataPks;
+    }
+  }, {
+    key: 'create',
+    value: function create(_ref2) {
+      var filterSeed = _ref2.filterSeed,
+          filterPeak = _ref2.filterPeak,
+          tTrEndPts = _ref2.tTrEndPts,
+          tSfPeaks = _ref2.tSfPeaks,
+          sweepExtentSt = _ref2.sweepExtentSt,
+          isUiAddIntgSt = _ref2.isUiAddIntgSt,
+          isUiNoBrushSt = _ref2.isUiNoBrushSt;
+
+      this.svg = d3.select('.d3Svg');
+      (0, _mount.MountMainFrame)(this, 'focus');
+      (0, _mount.MountClip)(this);
+
+      this.root = d3.select(this.rootKlass).selectAll('.focus-main');
+      this.setTip();
+      this.setDataParams(filterSeed, filterPeak, tTrEndPts, tSfPeaks);
+      (0, _compass.MountCompass)(this);
+
+      this.axis = (0, _mount.MountAxis)(this);
+
+      var _MountThresLine = (0, _mount.MountThresLine)(this, 'green');
+
+      var _MountThresLine2 = _slicedToArray(_MountThresLine, 1);
+
+      this.thresLine = _MountThresLine2[0];
+
+      this.grid = (0, _mount.MountGrid)(this);
+      this.ref = (0, _mount.MountRef)(this);
+      this.bars = (0, _mount.MountBars)(this);
+      (0, _mount.MountAxisLabelX)(this);
+      (0, _mount.MountAxisLabelY)(this);
+
+      if (this.data && this.data.length > 0) {
+        this.setConfig(sweepExtentSt);
+        this.drawBar();
+        this.drawThres();
+        this.drawGrid();
+      }
+      (0, _brush2.default)(this, isUiAddIntgSt, isUiNoBrushSt);
+    }
+  }, {
+    key: 'update',
+    value: function update(_ref3) {
+      var filterSeed = _ref3.filterSeed,
+          filterPeak = _ref3.filterPeak,
+          tTrEndPts = _ref3.tTrEndPts,
+          tSfPeaks = _ref3.tSfPeaks,
+          sweepExtentSt = _ref3.sweepExtentSt,
+          isUiAddIntgSt = _ref3.isUiAddIntgSt,
+          isUiNoBrushSt = _ref3.isUiNoBrushSt;
+
+      this.root = d3.select(this.rootKlass).selectAll('.focus-main');
+      this.setDataParams(filterSeed, filterPeak, tTrEndPts, tSfPeaks);
+
+      if (this.data && this.data.length > 0) {
+        this.setConfig(sweepExtentSt);
+        this.drawBar();
+        this.drawThres();
+        this.drawGrid();
+      }
+      (0, _brush2.default)(this, isUiAddIntgSt, isUiNoBrushSt);
+    }
+  }]);
+
+  return RectFocus;
+}();
+
+exports.default = RectFocus;