@commentray/render 0.0.5 → 0.0.8

package/dist/code-browser-client.js

@@ -1,15 +1,224 @@
 import { FuzzySearcher, PrefixSearcher, Query, SearcherFactory, SubstringSearcher, } from "@m31coding/fuzzy-search";
+import { activeBlockIdForViewport, clampViewportYToGutterLocal, codeLineDomIndex0, gutterRayBezierPaths, sortBlockLinksBySource, } from "./code-browser-block-rays.js";
 import { mirroredScrollTop, pickCommentrayLineForSourceScroll, pickSourceLine0ForCommentrayScroll, } from "./code-browser-scroll-sync.js";
 import { decodeBase64Utf8 } from "./code-browser-encoding.js";
 import { readEmbeddedRawB64Strings } from "./code-browser-embedded-payload.js";
-import { escapeHtmlHighlightingSearchTokens, findOrderedTokenSpans, lineAtIndex, offsetToLineIndex, } from "./code-browser-search.js";
+import { escapeHtmlHighlightingSearchTokens, filterPairsByDocumentedTreeQuery, findOrderedTokenSpans, lineAtIndex, offsetToLineIndex, pathRowsFromDocumentedPairs, tokenizeQuery, uniqueSourceFilePreviewRows, } from "./code-browser-search.js";
+import { findDocumentedPair, isHubRelativeStaticBrowseHref, isSameDocumentedPair, normPosixPath, resolveStaticBrowseHref, staticBrowseHrefForShellDataAttribute, } from "./code-browser-pair-nav.js";
+import { COMMENTRAY_COLOR_THEME_STORAGE_KEY, applyCommentrayColorTheme, nextCommentrayColorThemeMode, parseCommentrayColorThemeMode, } from "./code-browser-color-theme.js";
 import { readWebStorageItem, writeWebStorageItem } from "./code-browser-web-storage.js";
-function tokenizeQuery(q) {
-    return q.trim().split(/\s+/).filter(Boolean);
+/**
+ * Hub pages emit `./browse/…` relative to the site root. From `/…/browse/current.html` the browser
+ * would otherwise resolve that to `…/browse/browse/…`.
+ */
+function rewriteHubRelativeBrowseAnchorsIn(root) {
+    const path = globalThis.location.pathname;
+    const origin = globalThis.location.origin;
+    for (const el of Array.from(root.querySelectorAll("a[href]"))) {
+        if (!(el instanceof HTMLAnchorElement))
+            continue;
+        const raw = el.getAttribute("href")?.trim() ?? "";
+        if (!isHubRelativeStaticBrowseHref(raw))
+            continue;
+        el.href = resolveStaticBrowseHref(raw, path, origin);
+    }
+}
+function runMermaidOnFreshDocNodes(docBody) {
+    if (typeof globalThis.location !== "undefined" && globalThis.location.protocol === "file:")
+        return;
+    /** Only fenced diagram sources; Mermaid leaves other `.mermaid` nodes in the tree after render. */
+    const allPres = Array.from(docBody.querySelectorAll("pre.mermaid"));
+    /** Do not re-run on wrappers that already have SVG (avoids corrupting output after dual-mobile pane flip). */
+    const nodes = allPres.filter((pre) => {
+        const wrap = pre.closest(".commentray-mermaid");
+        return wrap === null || wrap.querySelector("svg") === null;
+    });
+    if (nodes.length === 0)
+        return;
+    const m = globalThis
+        .commentrayMermaid;
+    if (!m)
+        return;
+    void m.run({ nodes }).catch((err) => {
+        console.error("Commentray: mermaid.run failed", err);
+    });
 }
 function clamp(n, lo, hi) {
     return Math.max(lo, Math.min(hi, n));
 }
+/** Y offset in `scrollEl`’s scroll coordinate space to place `child`’s top at the scrollport (CSS px). */
+function scrollTopToAlignChildTop(scrollEl, child, leadCssPx) {
+    const cr = child.getBoundingClientRect();
+    const sr = scrollEl.getBoundingClientRect();
+    return scrollEl.scrollTop + (cr.top - sr.top) - scrollEl.clientTop - leadCssPx;
+}
+/** Avoid feedback loops when sub-pixel math matches the current position (common with browser zoom). */
+function applyScrollTopClamped(scrollEl, nextTop) {
+    const maxY = Math.max(0, scrollEl.scrollHeight - scrollEl.clientHeight);
+    const clamped = clamp(nextTop, 0, maxY);
+    if (Math.abs(scrollEl.scrollTop - clamped) < 0.25)
+        return;
+    scrollEl.scrollTop = clamped;
+}
+function paneUsesInternalYScroll(el) {
+    const max = el.scrollHeight - el.clientHeight;
+    if (max <= 1)
+        return false;
+    const oy = getComputedStyle(el).overflowY;
+    return oy === "auto" || oy === "scroll" || oy === "overlay";
+}
+function rootScrollingElement() {
+    const s = document.scrollingElement;
+    if (s instanceof HTMLElement)
+        return s;
+    return document.documentElement;
+}
+function applyWindowScrollRatio(ratio) {
+    const root = rootScrollingElement();
+    const maxY = Math.max(0, root.scrollHeight - root.clientHeight);
+    const next = clamp(ratio * maxY, 0, maxY);
+    if (Math.abs(root.scrollTop - next) < 0.25)
+        return;
+    root.scrollTop = next;
+}
+/**
+ * Reveal `child` near the top of the reading surface: the pane’s own scrollport when it scrolls
+ * internally (desktop dual-pane), otherwise the document root (narrow flow layout).
+ */
+function applyRevealChildInPane(scrollport, child, leadCssPx) {
+    if (paneUsesInternalYScroll(scrollport)) {
+        applyScrollTopClamped(scrollport, Math.round(scrollTopToAlignChildTop(scrollport, child, leadCssPx)));
+        return;
+    }
+    const root = rootScrollingElement();
+    const cr = child.getBoundingClientRect();
+    const targetTop = globalThis.scrollY + cr.top - leadCssPx;
+    const maxY = Math.max(0, root.scrollHeight - root.clientHeight);
+    const clamped = clamp(targetTop, 0, maxY);
+    if (Math.abs(root.scrollTop - clamped) < 0.25)
+        return;
+    root.scrollTop = clamped;
+}
+function windowScrollRatio() {
+    const root = rootScrollingElement();
+    const maxY = Math.max(0, root.scrollHeight - root.clientHeight);
+    return maxY > 0 ? clamp(root.scrollTop / maxY, 0, 1) : 0;
+}
+function applyDocToCodeFlipPlanImpl(codePane, _docPane, plan) {
+    if (plan.k === "block") {
+        const el = codePane.querySelector(`#code-line-${String(plan.src0)}`);
+        if (el) {
+            applyRevealChildInPane(codePane, el, 2);
+        }
+        else {
+            applyWindowScrollRatio(plan.winRatio);
+        }
+        return;
+    }
+    if (plan.k === "mirrorW") {
+        if (paneUsesInternalYScroll(codePane)) {
+            const maxC = Math.max(0, codePane.scrollHeight - codePane.clientHeight);
+            applyScrollTopClamped(codePane, plan.ratio * maxC);
+        }
+        else {
+            applyWindowScrollRatio(plan.ratio);
+        }
+        return;
+    }
+    const nextTop = mirroredScrollTop(plan.docTop, plan.docSH, plan.docCH, codePane.scrollHeight, codePane.clientHeight);
+    if (paneUsesInternalYScroll(codePane)) {
+        applyScrollTopClamped(codePane, nextTop);
+        return;
+    }
+    const denom = Math.max(1, codePane.scrollHeight - codePane.clientHeight);
+    applyWindowScrollRatio(clamp(nextTop / denom, 0, 1));
+}
+function applyCodeToDocFlipPlanImpl(_codePane, docPane, plan) {
+    if (plan.k === "block") {
+        const anchor = docPane.querySelector(`[data-commentray-line="${String(plan.mdLine0)}"]`);
+        if (anchor instanceof HTMLElement) {
+            applyRevealChildInPane(docPane, anchor, 2);
+        }
+        else {
+            applyWindowScrollRatio(plan.winRatio);
+        }
+        return;
+    }
+    if (plan.k === "mirrorW") {
+        if (paneUsesInternalYScroll(docPane)) {
+            const maxD = Math.max(0, docPane.scrollHeight - docPane.clientHeight);
+            applyScrollTopClamped(docPane, plan.ratio * maxD);
+        }
+        else {
+            applyWindowScrollRatio(plan.ratio);
+        }
+        return;
+    }
+    const nextTop = mirroredScrollTop(plan.codeTop, plan.codeSH, plan.codeCH, docPane.scrollHeight, docPane.clientHeight);
+    if (paneUsesInternalYScroll(docPane)) {
+        applyScrollTopClamped(docPane, nextTop);
+        return;
+    }
+    const denom = Math.max(1, docPane.scrollHeight - docPane.clientHeight);
+    applyWindowScrollRatio(clamp(nextTop / denom, 0, 1));
+}
+function buildDocToCodeFlipPlanBlockAware(docPane, getLinks) {
+    const winRatio = windowScrollRatio();
+    const links = getLinks();
+    const mdLine0 = probeCommentrayLine0FromDoc(docPane);
+    const src0 = pickSourceLine0ForCommentrayScroll(links, mdLine0);
+    if (src0 !== null)
+        return { k: "block", src0, winRatio };
+    if (paneUsesInternalYScroll(docPane)) {
+        return {
+            k: "mirrorI",
+            docTop: docPane.scrollTop,
+            docSH: docPane.scrollHeight,
+            docCH: docPane.clientHeight,
+        };
+    }
+    return { k: "mirrorW", ratio: winRatio };
+}
+function buildCodeToDocFlipPlanBlockAware(codePane, _docPane, getLinks) {
+    const winRatio = windowScrollRatio();
+    const links = getLinks();
+    const line1 = probeCodeLine1FromViewport(codePane);
+    const mdLine0 = pickCommentrayLineForSourceScroll(links, line1);
+    if (mdLine0 === null) {
+        if (paneUsesInternalYScroll(codePane)) {
+            return {
+                k: "mirrorI",
+                codeTop: codePane.scrollTop,
+                codeSH: codePane.scrollHeight,
+                codeCH: codePane.clientHeight,
+            };
+        }
+        return { k: "mirrorW", ratio: winRatio };
+    }
+    return { k: "block", mdLine0, winRatio };
+}
+function buildDocToCodeFlipPlanProportional(docPane) {
+    if (paneUsesInternalYScroll(docPane)) {
+        return {
+            k: "mirrorI",
+            docTop: docPane.scrollTop,
+            docSH: docPane.scrollHeight,
+            docCH: docPane.clientHeight,
+        };
+    }
+    return { k: "mirrorW", ratio: windowScrollRatio() };
+}
+function buildCodeToDocFlipPlanProportional(codePane) {
+    if (paneUsesInternalYScroll(codePane)) {
+        return {
+            k: "mirrorI",
+            codeTop: codePane.scrollTop,
+            codeSH: codePane.scrollHeight,
+            codeCH: codePane.clientHeight,
+        };
+    }
+    return { k: "mirrorW", ratio: windowScrollRatio() };
+}
 function escapeHtmlText(s) {
     return s
         .replace(/&/g, "&amp;")
@@ -154,37 +363,62 @@ function searchResultsInnerHtml(scope, combined, tokens, ctx) {
     }
     return buf.join("");
 }
+function emptyBrowsePreviewHint(scope, rowCount, totalUnique, usedIndexFallback) {
+    if (scope === "full") {
+        return "Documented source for this page. Type to search.";
+    }
+    if (usedIndexFallback) {
+        return "Documented source on this page. Type to search the index when it is available.";
+    }
+    if (totalUnique > rowCount) {
+        return `Indexed source files (${String(rowCount)} of ${String(totalUnique)} shown). Type to search.`;
+    }
+    return `Indexed source files (${String(totalUnique)}). Type to search.`;
+}
+function emptySearchBrowsePreviewInnerHtml(hint, rows, ctx) {
+    const tokens = [];
+    const buf = [`<div class="hint">${escapeHtmlText(hint)}</div>`];
+    const hits = rows.map((r, i) => ({
+        kind: "path",
+        line: i,
+        text: r.sourcePath,
+        score: 1000,
+        source: "ordered",
+        spPath: r.sourcePath,
+        crPath: r.commentrayPath,
+    }));
+    for (const h of hits) {
+        buf.push(searchHitButtonHtml(h, tokens, ctx));
+    }
+    return buf.join("");
+}
 function scrollDocToMarkdownLine0(docScrollEl, line0, mdLineCount) {
     const el = docScrollEl.querySelector(`#commentray-md-line-${String(line0)}`);
     if (el instanceof HTMLElement) {
-        const top = el.getBoundingClientRect().top -
-            docScrollEl.getBoundingClientRect().top +
-            docScrollEl.scrollTop;
-        docScrollEl.scrollTo({ top: Math.max(0, top - 8), behavior: "smooth" });
+        const top = Math.round(scrollTopToAlignChildTop(docScrollEl, el, 8));
+        const maxY = Math.round(Math.max(0, docScrollEl.scrollHeight - docScrollEl.clientHeight));
+        docScrollEl.scrollTo({ top: clamp(top, 0, maxY), behavior: "smooth" });
         return;
     }
     if (mdLineCount <= 1)
         return;
     const ratio = line0 / Math.max(1, mdLineCount - 1);
-    const maxScroll = docScrollEl.scrollHeight - docScrollEl.clientHeight;
-    docScrollEl.scrollTo({ top: ratio * Math.max(0, maxScroll), behavior: "smooth" });
+    const maxScroll = Math.max(0, docScrollEl.scrollHeight - docScrollEl.clientHeight);
+    docScrollEl.scrollTo({ top: ratio * maxScroll, behavior: "smooth" });
 }
-function openForeignPairBrowseOrGithub(pairs, commentrayPath, mdLine0) {
-    const p = pairs.find((x) => x.commentrayPath === commentrayPath);
-    if (!p)
-        return;
-    if (p.staticBrowseUrl?.trim()) {
-        const u = new URL(p.staticBrowseUrl.trim(), globalThis.location.href);
+function navigateToDocumentedPair(pair, mdLine0) {
+    if (pair.staticBrowseUrl?.trim()) {
+        const href = resolveStaticBrowseHref(pair.staticBrowseUrl.trim(), globalThis.location.pathname, globalThis.location.origin);
+        const u = new URL(href);
         if (mdLine0 !== null && mdLine0 >= 0)
             u.hash = `commentray-md-line-${String(mdLine0)}`;
-        globalThis.open(u.toString(), "_blank", "noopener,noreferrer");
+        globalThis.location.assign(u.toString());
         return;
     }
-    if (p.commentrayOnGithub) {
-        const url = mdLine0 !== null && mdLine0 >= 0
-            ? `${p.commentrayOnGithub}#L${String(mdLine0 + 1)}`
-            : p.commentrayOnGithub;
-        globalThis.open(url, "_blank", "noopener,noreferrer");
+    const gh = (pair.commentrayOnGithub ?? "").trim();
+    if (gh.length > 0) {
+        const url = mdLine0 !== null && mdLine0 >= 0 ? `${gh}#L${String(mdLine0 + 1)}` : gh;
+        globalThis.location.assign(url);
     }
 }
 function readSearchScopeFromShell(shell) {
@@ -243,18 +477,25 @@ function scrollCodeHitToView(line) {
         el.scrollIntoView({ block: "nearest", behavior: "smooth" });
 }
 function handlePathSearchHit(button, deps) {
-    const cr = (button.getAttribute("data-cr-path")?.trim() ?? "").trim();
-    const curCr = deps.mutable.commentrayPathLabel.trim();
-    const isCurrentPair = cr.length === 0 || cr === curCr;
-    if (isCurrentPair) {
+    const hitCr = (button.getAttribute("data-cr-path") ?? "").trim();
+    const hitSp = (button.getAttribute("data-sp-path") ?? "").trim();
+    const pair = findDocumentedPair(deps.mutable.documentedPairs, hitCr, hitSp);
+    if (pair && isSameDocumentedPair(pair, deps.filePathLabel, deps.mutable.commentrayPathLabel)) {
         deps.docScrollEl.scrollTo({ top: 0, behavior: "smooth" });
         return;
     }
-    openForeignPairBrowseOrGithub(deps.mutable.documentedPairs, cr, null);
+    if (pair)
+        navigateToDocumentedPair(pair, null);
 }
 function handleMdSearchHit(line, crHit, deps) {
-    if (crHit.length > 0 && crHit !== deps.mutable.commentrayPathLabel) {
-        openForeignPairBrowseOrGithub(deps.mutable.documentedPairs, crHit, line);
+    const curCr = deps.mutable.commentrayPathLabel.trim();
+    const cr = crHit.trim();
+    if (cr.length > 0 && normPosixPath(cr) !== normPosixPath(curCr)) {
+        const pair = findDocumentedPair(deps.mutable.documentedPairs, cr, "");
+        if (pair) {
+            navigateToDocumentedPair(pair, line);
+            return;
+        }
         return;
     }
     scrollDocToMarkdownLine0(deps.docScrollEl, line, deps.mutable.mdLines.length);
@@ -273,6 +514,36 @@ function handleSearchHitButtonClick(button, deps) {
     }
     handleMdSearchHit(line, crHit, deps);
 }
+/** Empty query + ArrowDown: browse preview HTML, or null when there is nothing to show. */
+function emptyBrowsePreviewInnerHtml(scope, filePathLabel, mutable) {
+    const hitCtx = {
+        currentCommentrayPath: mutable.commentrayPathLabel,
+        currentSourcePath: filePathLabel,
+    };
+    if (scope === "full") {
+        const sp = filePathLabel.trim();
+        if (sp.length === 0)
+            return null;
+        const rows = [
+            { sourcePath: sp, commentrayPath: mutable.commentrayPathLabel.trim() },
+        ];
+        const hint = emptyBrowsePreviewHint("full", rows.length, rows.length, false);
+        return emptySearchBrowsePreviewInnerHtml(hint, rows, hitCtx);
+    }
+    const { rows, totalUnique } = uniqueSourceFilePreviewRows(mutable.documentedPairs);
+    if (rows.length > 0) {
+        const hint = emptyBrowsePreviewHint("commentray-and-paths", rows.length, totalUnique, false);
+        return emptySearchBrowsePreviewInnerHtml(hint, rows, hitCtx);
+    }
+    const sp = filePathLabel.trim();
+    if (sp.length === 0)
+        return null;
+    const fb = [
+        { sourcePath: sp, commentrayPath: mutable.commentrayPathLabel.trim() },
+    ];
+    const hint = emptyBrowsePreviewHint("commentray-and-paths", fb.length, fb.length, true);
+    return emptySearchBrowsePreviewInnerHtml(hint, fb, hitCtx);
+}
 function wireSearchUi(ctx) {
     const { scope, filePathLabel, mutable, rawCode, searchInput, searchClear, searchResults, docScrollEl, } = ctx;
     let debounceTimer;
@@ -283,6 +554,13 @@ function wireSearchUi(ctx) {
         searchResults.innerHTML = "";
         searchResults.hidden = true;
     }
+    function renderEmptyBrowsePreview() {
+        const html = emptyBrowsePreviewInnerHtml(scope, filePathLabel, mutable);
+        if (html === null)
+            return;
+        searchResults.hidden = false;
+        searchResults.innerHTML = html;
+    }
     function runSearch() {
         const tokens = tokenizeQuery(searchInput.value);
         if (tokens.length === 0) {
@@ -308,7 +586,7 @@ function wireSearchUi(ctx) {
             currentSourcePath: filePathLabel,
         });
     }
-    const hitClickDeps = { mutable, docScrollEl };
+    const hitClickDeps = { mutable, docScrollEl, filePathLabel };
     searchResults.addEventListener("click", (ev) => {
         const hit = findSearchHitButton(ev.target, searchResults);
         if (!hit)
@@ -319,6 +597,14 @@ function wireSearchUi(ctx) {
         clearTimeout(debounceTimer);
         debounceTimer = setTimeout(runSearch, 200);
     });
+    searchInput.addEventListener("keydown", (e) => {
+        if (e.key !== "ArrowDown")
+            return;
+        if (tokenizeQuery(searchInput.value).length > 0)
+            return;
+        renderEmptyBrowsePreview();
+        e.preventDefault();
+    });
     searchClear.addEventListener("click", clearSearch);
     document.addEventListener("keydown", (e) => {
         if (e.key !== "Escape")
@@ -334,20 +620,51 @@ function wireSearchUi(ctx) {
         e.preventDefault();
     });
 }
-function wireWrapToggle(storageWrap, codePane, wrapCb) {
+/**
+ * After toggling `pre-wrap`, line rows reflow without necessarily resizing the pane’s border box,
+ * so gutter block rays and scroll sync must be nudged explicitly.
+ *
+ * Pass optional `docWrapRoots` (e.g. `#doc-pane` and `#doc-pane-body` in dual layout): the toggle
+ * syncs `wrap` on those nodes so commentary fenced blocks and prose honor the control. `#doc-pane-body`
+ * is targeted in CSS with an id so rules win over `pre code.hljs` from the highlight.js theme.
+ */
+function wireWrapToggle(storageWrap, codePane, wrapCb, onAfterLayout, ...docWrapRoots) {
+    const docTargets = docWrapRoots.filter((el) => el instanceof HTMLElement);
     const wrap = readWebStorageItem(localStorage, storageWrap) === "1";
     wrapCb.checked = wrap;
-    if (wrap)
+    if (wrap) {
         codePane.classList.add("wrap");
+        for (const el of docTargets)
+            el.classList.add("wrap");
+    }
+    else {
+        codePane.classList.remove("wrap");
+        for (const el of docTargets)
+            el.classList.remove("wrap");
+    }
     wrapCb.addEventListener("change", () => {
         if (wrapCb.checked) {
             codePane.classList.add("wrap");
+            for (const el of docTargets)
+                el.classList.add("wrap");
             writeWebStorageItem(localStorage, storageWrap, "1");
         }
         else {
             codePane.classList.remove("wrap");
+            for (const el of docTargets)
+                el.classList.remove("wrap");
             writeWebStorageItem(localStorage, storageWrap, "0");
         }
+        if (!onAfterLayout)
+            return;
+        queueMicrotask(() => {
+            requestAnimationFrame(() => {
+                onAfterLayout();
+                requestAnimationFrame(() => {
+                    onAfterLayout();
+                });
+            });
+        });
     });
 }
 function parseScrollBlockLinksFromShell(b64) {
@@ -381,111 +698,367 @@ function parseScrollBlockLinksFromShell(b64) {
         return [];
     }
 }
+function rootScrollNearDocumentEnd(edgePx = 56) {
+    const root = rootScrollingElement();
+    const maxY = Math.max(0, root.scrollHeight - root.clientHeight);
+    return maxY > 0 && root.scrollTop >= maxY - edgePx;
+}
 function probeCodeLine1FromViewport(codePane) {
-    const y = codePane.getBoundingClientRect().top + 2;
     const rows = codePane.querySelectorAll('[id^="code-line-"]');
+    if (rows.length === 0)
+        return 1;
+    if (!paneUsesInternalYScroll(codePane)) {
+        if (rootScrollNearDocumentEnd()) {
+            const last = rows[rows.length - 1];
+            const m = /^code-line-(\d+)$/.exec(last.id);
+            if (m)
+                return Number(m[1]) + 1;
+            return rows.length;
+        }
+        const sr = codePane.getBoundingClientRect();
+        const vh = globalThis.innerHeight;
+        const clipT = Math.max(0, sr.top);
+        const clipB = Math.min(vh, sr.bottom);
+        const y = clipT + Math.max(2, Math.min(40, (clipB - clipT) * 0.15));
+        for (const el of rows) {
+            const r = el.getBoundingClientRect();
+            if (r.bottom > y - 1e-3) {
+                const m = /^code-line-(\d+)$/.exec(el.id);
+                if (m)
+                    return Number(m[1]) + 1;
+                return 1;
+            }
+        }
+        return rows.length;
+    }
+    const sr = codePane.getBoundingClientRect();
+    const y = sr.top + codePane.clientTop + 2;
     for (const el of rows) {
         const r = el.getBoundingClientRect();
-        if (r.bottom > y) {
+        if (r.bottom > y - 1e-3) {
             const m = /^code-line-(\d+)$/.exec(el.id);
             if (m)
                 return Number(m[1]) + 1;
             return 1;
         }
     }
-    return rows.length > 0 ? rows.length : 1;
+    return rows.length;
 }
 function probeCommentrayLine0FromDoc(docPane) {
-    const y = docPane.getBoundingClientRect().top + 2;
     const anchors = docPane.querySelectorAll(".commentray-block-anchor");
+    if (anchors.length === 0)
+        return 0;
+    if (!paneUsesInternalYScroll(docPane)) {
+        if (rootScrollNearDocumentEnd()) {
+            const last = anchors[anchors.length - 1];
+            const lineAttr = last.getAttribute("data-commentray-line");
+            return lineAttr !== null && lineAttr !== "" ? Number(lineAttr) : 0;
+        }
+        const dr = docPane.getBoundingClientRect();
+        const vh = globalThis.innerHeight;
+        const clipT = Math.max(0, dr.top);
+        const clipB = Math.min(vh, dr.bottom);
+        const y = clipT + Math.max(2, Math.min(40, (clipB - clipT) * 0.15));
+        let best = 0;
+        for (const a of anchors) {
+            const lineAttr = a.getAttribute("data-commentray-line");
+            if (lineAttr === null || lineAttr === "")
+                continue;
+            if (a.getBoundingClientRect().top <= y + 1 + 1e-3)
+                best = Number(lineAttr);
+            else
+                break;
+        }
+        return best;
+    }
+    const dr = docPane.getBoundingClientRect();
+    const y = dr.top + docPane.clientTop + 2;
     let best = 0;
     for (const a of anchors) {
         const lineAttr = a.getAttribute("data-commentray-line");
         if (lineAttr === null || lineAttr === "")
             continue;
-        if (a.getBoundingClientRect().top <= y + 1)
+        if (a.getBoundingClientRect().top <= y + 1 + 1e-3)
             best = Number(lineAttr);
         else
             break;
     }
     return best;
 }
+/**
+ * Programmatic `scrollTop` on the partner pane can emit a `scroll` event after the
+ * synchronous `syncing` guard is cleared; that late event would mirror back and
+ * jerk the pane the user is scrolling. We arm a short-lived skip on the partner
+ * before each sync-driven update, and release one skip after two rAFs if no event
+ * consumed it (e.g. `applyScrollTopClamped` no-oped).
+ */
+function armIgnoreNextPaneScrollReaction(armed) {
+    armed.n++;
+    queueMicrotask(() => {
+        requestAnimationFrame(() => {
+            requestAnimationFrame(() => {
+                armed.n = Math.max(0, armed.n - 1);
+            });
+        });
+    });
+}
 function wireBidirectionalScroll(codePane, docPane, syncFromCode, syncFromDoc) {
     let syncing = "none";
+    const ignoreCodeScrollFromPartnerSync = { n: 0 };
+    const ignoreDocScrollFromPartnerSync = { n: 0 };
     codePane.addEventListener("scroll", () => {
+        if (ignoreCodeScrollFromPartnerSync.n > 0) {
+            ignoreCodeScrollFromPartnerSync.n--;
+            return;
+        }
         if (syncing === "doc")
             return;
         syncing = "code";
+        armIgnoreNextPaneScrollReaction(ignoreDocScrollFromPartnerSync);
         syncFromCode();
         syncing = "none";
     }, { passive: true });
     docPane.addEventListener("scroll", () => {
+        if (ignoreDocScrollFromPartnerSync.n > 0) {
+            ignoreDocScrollFromPartnerSync.n--;
+            return;
+        }
         if (syncing === "code")
             return;
         syncing = "doc";
+        armIgnoreNextPaneScrollReaction(ignoreCodeScrollFromPartnerSync);
         syncFromDoc();
         syncing = "none";
     }, { passive: true });
 }
 /** Index-backed scroll sync when `data-scroll-block-links-b64` is present; else see proportional fallback. */
 function wireBlockAwareScrollSync(codePane, docPane, getLinks) {
-    wireBidirectionalScroll(codePane, docPane, () => {
-        const links = getLinks();
-        const line1 = probeCodeLine1FromViewport(codePane);
-        const mdLine0 = pickCommentrayLineForSourceScroll(links, line1);
-        if (mdLine0 === null) {
-            docPane.scrollTop = mirroredScrollTop(codePane.scrollTop, codePane.scrollHeight, codePane.clientHeight, docPane.scrollHeight, docPane.clientHeight);
-        }
-        else {
-            const anchor = docPane.querySelector(`[data-commentray-line="${String(mdLine0)}"]`);
-            if (anchor instanceof HTMLElement) {
-                const top = anchor.getBoundingClientRect().top -
-                    docPane.getBoundingClientRect().top +
-                    docPane.scrollTop;
-                docPane.scrollTop = Math.max(0, top - 2);
-            }
-            else {
-                docPane.scrollTop = mirroredScrollTop(codePane.scrollTop, codePane.scrollHeight, codePane.clientHeight, docPane.scrollHeight, docPane.clientHeight);
-            }
-        }
-    }, () => {
-        const links = getLinks();
-        const mdLine0 = probeCommentrayLine0FromDoc(docPane);
-        const src0 = pickSourceLine0ForCommentrayScroll(links, mdLine0);
-        if (src0 === null) {
-            codePane.scrollTop = mirroredScrollTop(docPane.scrollTop, docPane.scrollHeight, docPane.clientHeight, codePane.scrollHeight, codePane.clientHeight);
-        }
-        else {
-            const el = document.getElementById(`code-line-${String(src0)}`);
-            if (el) {
-                const top = el.getBoundingClientRect().top -
-                    codePane.getBoundingClientRect().top +
-                    codePane.scrollTop;
-                codePane.scrollTop = Math.max(0, top - 2);
-            }
-            else {
-                codePane.scrollTop = mirroredScrollTop(docPane.scrollTop, docPane.scrollHeight, docPane.clientHeight, codePane.scrollHeight, codePane.clientHeight);
-            }
-        }
-    });
+    let pendingDocToCode = null;
+    let pendingCodeToDoc = null;
+    const syncFromCodeToDoc = () => {
+        applyCodeToDocFlipPlanImpl(codePane, docPane, buildCodeToDocFlipPlanBlockAware(codePane, docPane, getLinks));
+    };
+    const syncFromDocToCode = () => {
+        applyDocToCodeFlipPlanImpl(codePane, docPane, buildDocToCodeFlipPlanBlockAware(docPane, getLinks));
+    };
+    const prepareMobileFlipToCode = () => {
+        pendingDocToCode = buildDocToCodeFlipPlanBlockAware(docPane, getLinks);
+    };
+    const finishMobileFlipToCode = () => {
+        if (!pendingDocToCode)
+            return;
+        const p = pendingDocToCode;
+        pendingDocToCode = null;
+        applyDocToCodeFlipPlanImpl(codePane, docPane, p);
+    };
+    const prepareMobileFlipToDoc = () => {
+        pendingCodeToDoc = buildCodeToDocFlipPlanBlockAware(codePane, docPane, getLinks);
+    };
+    const finishMobileFlipToDoc = () => {
+        if (!pendingCodeToDoc)
+            return;
+        const p = pendingCodeToDoc;
+        pendingCodeToDoc = null;
+        applyCodeToDocFlipPlanImpl(codePane, docPane, p);
+    };
+    wireBidirectionalScroll(codePane, docPane, syncFromCodeToDoc, syncFromDocToCode);
+    return {
+        syncFromCodeToDoc,
+        syncFromDocToCode,
+        prepareMobileFlipToCode,
+        finishMobileFlipToCode,
+        prepareMobileFlipToDoc,
+        finishMobileFlipToDoc,
+    };
 }
 /** Proportional scroll sync when there is no index-backed block map (GitHub Pages default). */
 function wireProportionalScrollSync(codePane, docPane) {
-    wireBidirectionalScroll(codePane, docPane, () => {
-        docPane.scrollTop = mirroredScrollTop(codePane.scrollTop, codePane.scrollHeight, codePane.clientHeight, docPane.scrollHeight, docPane.clientHeight);
-    }, () => {
-        codePane.scrollTop = mirroredScrollTop(docPane.scrollTop, docPane.scrollHeight, docPane.clientHeight, codePane.scrollHeight, codePane.clientHeight);
+    let pendingDocToCode = null;
+    let pendingCodeToDoc = null;
+    const syncFromCodeToDoc = () => {
+        applyCodeToDocFlipPlanImpl(codePane, docPane, buildCodeToDocFlipPlanProportional(codePane));
+    };
+    const syncFromDocToCode = () => {
+        applyDocToCodeFlipPlanImpl(codePane, docPane, buildDocToCodeFlipPlanProportional(docPane));
+    };
+    const prepareMobileFlipToCode = () => {
+        pendingDocToCode = buildDocToCodeFlipPlanProportional(docPane);
+    };
+    const finishMobileFlipToCode = () => {
+        if (!pendingDocToCode)
+            return;
+        const p = pendingDocToCode;
+        pendingDocToCode = null;
+        applyDocToCodeFlipPlanImpl(codePane, docPane, p);
+    };
+    const prepareMobileFlipToDoc = () => {
+        pendingCodeToDoc = buildCodeToDocFlipPlanProportional(codePane);
+    };
+    const finishMobileFlipToDoc = () => {
+        if (!pendingCodeToDoc)
+            return;
+        const p = pendingCodeToDoc;
+        pendingCodeToDoc = null;
+        applyCodeToDocFlipPlanImpl(codePane, docPane, p);
+    };
+    wireBidirectionalScroll(codePane, docPane, syncFromCodeToDoc, syncFromDocToCode);
+    return {
+        syncFromCodeToDoc,
+        syncFromDocToCode,
+        prepareMobileFlipToCode,
+        finishMobileFlipToCode,
+        prepareMobileFlipToDoc,
+        finishMobileFlipToDoc,
+    };
+}
+function centerYInViewport(el) {
+    const r = el.getBoundingClientRect();
+    return (r.top + r.bottom) / 2;
+}
+/**
+ * Vertical anchor for gutter rays on the source side. Must match the **numbered row** the reader
+ * sees: the full `.code-line` row (line number + highlighted code) shares one grid row with
+ * aligned line-heights. Measuring only `pre code` can shift Y (hljs spans, sub-pixel layout) so
+ * rays sit above the line labels; the row’s geometric center tracks `lines:a-b` anchors reliably.
+ */
+function codeLineHighlightCenterYViewport(lineEl) {
+    return centerYInViewport(lineEl);
+}
+function commentaryBandEndYViewport(docScrollEl, next, docTop) {
+    if (next) {
+        const nextEl = document.getElementById(`commentray-block-${next.id}`);
+        return nextEl ? nextEl.getBoundingClientRect().top - 3 : centerYInViewport(docTop);
+    }
+    const dr = docScrollEl.getBoundingClientRect();
+    let bottom = dr.bottom - 4;
+    const lastKid = docScrollEl.children[docScrollEl.children.length - 1];
+    if (lastKid)
+        bottom = Math.min(bottom, lastKid.getBoundingClientRect().bottom - 4);
+    return bottom;
+}
+function subscribeBlockRayRedraw(gutter, codePane, docScrollEl, scheduleDraw) {
+    const onScrollOrResize = () => scheduleDraw();
+    codePane.addEventListener("scroll", onScrollOrResize, { passive: true });
+    docScrollEl.addEventListener("scroll", onScrollOrResize, { passive: true });
+    globalThis.addEventListener("resize", onScrollOrResize);
+    const ro = new ResizeObserver(onScrollOrResize);
+    ro.observe(gutter);
+    ro.observe(codePane);
+    ro.observe(docScrollEl);
+    const shell = gutter.parentElement;
+    if (shell)
+        ro.observe(shell);
+}
+function drawBlockRaysIntoSvg(svg, gutter, docScrollEl, getLinks, probeTopSourceLine1Based) {
+    const links = getLinks();
+    const sorted = sortBlockLinksBySource(links);
+    const gutterRect = gutter.getBoundingClientRect();
+    const w = gutterRect.width;
+    const h = gutterRect.height;
+    if (w <= 0 || h <= 0 || sorted.length === 0) {
+        svg.replaceChildren();
+        return;
+    }
+    const activeId = activeBlockIdForViewport(links, probeTopSourceLine1Based());
+    svg.setAttribute("viewBox", `0 0 ${String(w)} ${String(h)}`);
+    svg.setAttribute("preserveAspectRatio", "none");
+    const parts = [];
+    for (let i = 0; i < sorted.length; i++) {
+        const link = sorted[i];
+        if (!link)
+            continue;
+        const next = sorted[i + 1];
+        const i0 = codeLineDomIndex0(link.sourceStart);
+        const i1 = codeLineDomIndex0(link.sourceEnd);
+        const codeTop = document.getElementById(`code-line-${String(i0)}`);
+        const codeBot = document.getElementById(`code-line-${String(i1)}`);
+        const docTop = document.getElementById(`commentray-block-${link.id}`);
+        if (!codeTop || !codeBot || !docTop)
+            continue;
+        const docEndYViewport = commentaryBandEndYViewport(docScrollEl, next, docTop);
+        const yCodeTop = codeLineHighlightCenterYViewport(codeTop);
+        const yCodeBot = codeLineHighlightCenterYViewport(codeBot);
+        const yDocTop = docTop.getBoundingClientRect().top + 2;
+        const yDocEnd = Math.max(docEndYViewport, yDocTop + 4);
+        const c0 = clampViewportYToGutterLocal(yCodeTop, gutterRect.top, h);
+        const c1 = clampViewportYToGutterLocal(yDocTop, gutterRect.top, h);
+        const c2 = clampViewportYToGutterLocal(yCodeBot, gutterRect.top, h);
+        const c3 = clampViewportYToGutterLocal(yDocEnd, gutterRect.top, h);
+        const strokeClass = link.id === activeId ? "gutter__rays-path gutter__rays-path--active" : "gutter__rays-path";
+        const trailClass = `${strokeClass} gutter__rays-path--trail`;
+        const topPaths = gutterRayBezierPaths(0, c0.y, w, c1.y, {
+            tension: 0.38,
+            clipStart: c0.clipped,
+            clipEnd: c1.clipped,
+        });
+        const botPaths = gutterRayBezierPaths(0, c2.y, w, c3.y, {
+            tension: 0.38,
+            clipStart: c2.clipped,
+            clipEnd: c3.clipped,
+        });
+        const topExtra = topPaths.dotted ? `<path class="${trailClass}" d="${topPaths.dotted}" />` : "";
+        const botExtra = botPaths.dotted ? `<path class="${trailClass}" d="${botPaths.dotted}" />` : "";
+        parts.push(`<g class="gutter__rays-block" data-commentray-block="${escapeHtmlText(link.id)}">` +
+            `<path class="${strokeClass}" d="${topPaths.solid}" />` +
+            topExtra +
+            `<path class="${strokeClass}" d="${botPaths.solid}" />` +
+            botExtra +
+            `</g>`);
+    }
+    svg.innerHTML = parts.join("");
+}
+/**
+ * Splines in the gutter between each block’s source range and its commentary band (dual pane,
+ * index-backed blocks). Emphasizes the block aligned with the current source viewport; clamps
+ * off-screen endpoints so readers see which way to scroll.
+ *
+ * @returns Request a redraw after DOM changes that do not resize the panes (e.g. multi-angle body swap).
+ */
+function wireBlockRayConnectors(args) {
+    const { gutter, codePane, docScrollEl, getLinks, probeTopSourceLine1Based } = args;
+    const svgNs = "http://www.w3.org/2000/svg";
+    const host = document.createElement("div");
+    host.className = "gutter__rays";
+    host.setAttribute("aria-hidden", "true");
+    const svg = document.createElementNS(svgNs, "svg");
+    host.appendChild(svg);
+    gutter.appendChild(host);
+    let raf = 0;
+    function scheduleDraw() {
+        if (raf !== 0)
+            return;
+        raf = globalThis.requestAnimationFrame(() => {
+            raf = 0;
+            drawBlockRaysIntoSvg(svg, gutter, docScrollEl, getLinks, probeTopSourceLine1Based);
+        });
+    }
+    subscribeBlockRayRedraw(gutter, codePane, docScrollEl, scheduleDraw);
+    scheduleDraw();
+    /** First paint can report gutter height 0 before flex layout settles; redraw after layout. */
+    globalThis.requestAnimationFrame(() => {
+        scheduleDraw();
+        globalThis.requestAnimationFrame(scheduleDraw);
     });
+    return scheduleDraw;
 }
 function isDocumentedPairNav(x) {
     if (typeof x !== "object" || x === null)
         return false;
     const o = x;
-    return (typeof o.sourcePath === "string" &&
-        typeof o.commentrayPath === "string" &&
-        typeof o.sourceOnGithub === "string" &&
-        typeof o.commentrayOnGithub === "string" &&
-        (o.staticBrowseUrl === undefined || typeof o.staticBrowseUrl === "string"));
+    if (typeof o.sourcePath !== "string" || typeof o.commentrayPath !== "string")
+        return false;
+    if (o.staticBrowseUrl !== undefined && typeof o.staticBrowseUrl !== "string")
+        return false;
+    const sg = o.sourceOnGithub;
+    const cg = o.commentrayOnGithub;
+    const hasSg = typeof sg === "string";
+    const hasCg = typeof cg === "string";
+    if (hasSg !== hasCg)
+        return false;
+    const browseOk = typeof o.staticBrowseUrl === "string" && o.staticBrowseUrl.trim().length > 0;
+    if (!browseOk && !hasSg)
+        return false;
+    return true;
 }
 function pairsFromJsonArray(raw) {
     const pairs = [];
@@ -497,27 +1070,6 @@ function pairsFromJsonArray(raw) {
     }
     return pairs;
 }
-function pathRowsFromDocumentedPairs(pairs) {
-    const seen = new Set();
-    const out = [];
-    let line = 0;
-    for (const p of pairs) {
-        for (const seg of [p.sourcePath, p.commentrayPath]) {
-            const t = seg.trim();
-            if (!t || seen.has(t))
-                continue;
-            seen.add(t);
-            out.push({
-                kind: "path",
-                line: line++,
-                text: t,
-                spPath: p.sourcePath,
-                crPath: p.commentrayPath,
-            });
-        }
-    }
-    return out;
-}
 function commentrayLineRowFromNavJson(r) {
     if (r.kind !== "commentrayLine")
         return null;
@@ -612,6 +1164,25 @@ function treeFileLinkLabel(pr, disambiguate) {
     const stem = companionDocStem(pr.commentrayPath);
     return stem !== "" && stem !== base ? `${base} · ${stem}` : base;
 }
+/** Prefer static hub browse page; optional SCM blob URL when the export has no `staticBrowseUrl`. */
+function treeFileLinkHref(pr) {
+    const browse = (pr.staticBrowseUrl ?? "").trim();
+    if (browse.length > 0) {
+        return resolveStaticBrowseHref(browse, globalThis.location.pathname, globalThis.location.origin);
+    }
+    const gh = (pr.commentrayOnGithub ?? "").trim();
+    return gh.length > 0 ? gh : "#";
+}
+function treeFileLinkTitle(pr) {
+    const browse = (pr.staticBrowseUrl ?? "").trim();
+    if (browse.length > 0) {
+        return `${pr.sourcePath} — open this pair in the site viewer`;
+    }
+    if ((pr.commentrayOnGithub ?? "").trim().length > 0) {
+        return `${pr.sourcePath} — open companion commentray on the repository host`;
+    }
+    return pr.sourcePath;
+}
 function renderDocumentedTreeHtml(node) {
     const keys = [...node.children.keys()].sort((a, b) => a.localeCompare(b));
     if (keys.length === 0)
@@ -629,19 +1200,23 @@ function renderDocumentedTreeHtml(node) {
             const multi = ch.pairs.length > 1;
             for (const pr of ch.pairs) {
                 const label = escapeHtmlText(treeFileLinkLabel(pr, multi));
-                const title = escapeHtmlText(`${pr.sourcePath} — open companion on GitHub`);
+                const title = escapeHtmlText(treeFileLinkTitle(pr));
+                const href = escapeHtmlText(treeFileLinkHref(pr));
+                const useSiteBrowse = (pr.staticBrowseUrl?.trim() ?? "").length > 0;
+                const external = useSiteBrowse ? "" : ' target="_blank" rel="noopener noreferrer"';
                 lis.push(`<li><div class="tree-file">` +
-                    `<a class="tree-file-link" href="${escapeHtmlText(pr.commentrayOnGithub)}" target="_blank" rel="noopener noreferrer" title="${title}">${label}</a>` +
+                    `<a class="tree-file-link" href="${href}"${external} title="${title}">${label}</a>` +
                     `</div></li>`);
             }
         }
     }
     return `<ul>${lis.join("")}</ul>`;
 }
-function renderDocumentedPairsIntoHost(treeHost, pairs) {
+function renderDocumentedPairsIntoHost(treeHost, pairs, emptyBecauseFilter) {
     if (pairs.length === 0) {
-        treeHost.innerHTML =
-            '<p class="nav-rail__doc-hub-hint" role="status">No documented pairs in this export.</p>';
+        treeHost.innerHTML = emptyBecauseFilter
+            ? '<p class="nav-rail__doc-hub-hint" role="status">No paths match this filter.</p>'
+            : '<p class="nav-rail__doc-hub-hint" role="status">No documented pairs in this export.</p>';
         return;
     }
     const root = { children: new Map(), pairs: [] };
@@ -677,9 +1252,56 @@ function loadDocumentedPairs(jsonUrl, embeddedB64) {
         return loaded ?? [];
     };
 }
+/**
+ * On narrow viewports the toolbar strip uses horizontal overflow; absolutely positioned
+ * `.nav-rail__doc-hub-inner` is clipped. Pin the panel with `position: fixed` while open.
+ */
+function wireDocumentedFilesTreeMobileFlyout(hub) {
+    const innerCandidate = hub.querySelector(".nav-rail__doc-hub-inner");
+    if (!(innerCandidate instanceof HTMLElement)) {
+        return () => { };
+    }
+    const flyoutInner = innerCandidate;
+    const mq = globalThis.matchMedia("(max-width: 767px)");
+    function summaryEl() {
+        const s = hub.querySelector("summary");
+        return s instanceof HTMLElement ? s : null;
+    }
+    function placeFlyout() {
+        if (!hub.open || !mq.matches) {
+            flyoutInner.style.removeProperty("position");
+            flyoutInner.style.removeProperty("top");
+            flyoutInner.style.removeProperty("left");
+            flyoutInner.style.removeProperty("right");
+            flyoutInner.style.removeProperty("width");
+            flyoutInner.style.removeProperty("max-width");
+            flyoutInner.style.removeProperty("max-height");
+            flyoutInner.style.removeProperty("z-index");
+            return;
+        }
+        const sum = summaryEl();
+        if (!sum)
+            return;
+        const r = sum.getBoundingClientRect();
+        const pad = 8;
+        flyoutInner.style.position = "fixed";
+        flyoutInner.style.top = `${String(Math.round(r.bottom + 4))}px`;
+        flyoutInner.style.left = `${String(Math.round(pad))}px`;
+        flyoutInner.style.right = `${String(Math.round(pad))}px`;
+        flyoutInner.style.width = "auto";
+        flyoutInner.style.maxWidth = "none";
+        flyoutInner.style.maxHeight = "min(52vh, 400px)";
+        flyoutInner.style.zIndex = "200";
+    }
+    mq.addEventListener("change", placeFlyout);
+    globalThis.addEventListener("resize", placeFlyout);
+    globalThis.addEventListener("scroll", placeFlyout, true);
+    return placeFlyout;
+}
 function wireDocumentedFilesTree() {
     const hub = document.getElementById("documented-files-hub");
     const treeHost = document.getElementById("documented-files-tree");
+    const filterInput = document.getElementById("documented-files-filter");
     const shell = document.getElementById("shell");
     if (!(hub instanceof HTMLDetailsElement) || !(treeHost instanceof HTMLElement)) {
         return;
@@ -689,22 +1311,45 @@ function wireDocumentedFilesTree() {
     const embeddedB64 = shell?.getAttribute("data-documented-pairs-b64")?.trim() ?? "";
     if (jsonUrl.length === 0 && embeddedB64.length === 0)
         return;
+    const placeDocHubFlyout = wireDocumentedFilesTreeMobileFlyout(hub);
     const ensureLoaded = loadDocumentedPairs(jsonUrl, embeddedB64);
+    let cachedPairs = null;
+    function applyFilterAndRender() {
+        if (cachedPairs === null)
+            return;
+        const q = filterInput instanceof HTMLInputElement ? filterInput.value : "";
+        const pairs = filterPairsByDocumentedTreeQuery(cachedPairs, q);
+        const filterActive = q.trim().length > 0;
+        renderDocumentedPairsIntoHost(treeMount, pairs, filterActive && cachedPairs.length > 0 && pairs.length === 0);
+    }
     async function hydrateTree() {
         try {
             const pairs = await ensureLoaded();
-            renderDocumentedPairsIntoHost(treeMount, pairs);
+            cachedPairs = pairs;
+            applyFilterAndRender();
         }
         catch {
+            cachedPairs = null;
             treeMount.innerHTML =
                 '<p class="nav-rail__doc-hub-hint" role="alert">Could not load the file list.</p>';
         }
     }
     hub.addEventListener("toggle", () => {
+        placeDocHubFlyout();
+        if (hub.open) {
+            globalThis.requestAnimationFrame(placeDocHubFlyout);
+        }
         if (!hub.open)
             return;
         void hydrateTree();
     });
+    if (filterInput instanceof HTMLInputElement) {
+        filterInput.addEventListener("input", () => {
+            if (!hub.open || cachedPairs === null)
+                return;
+            applyFilterAndRender();
+        });
+    }
 }
 function wireSplitter(storageSplit, shell, codePane, gutter, initialPct) {
     let dragging = false;
@@ -717,6 +1362,7 @@ function wireSplitter(storageSplit, shell, codePane, gutter, initialPct) {
         const p = clamp((x / rect.width) * 100, 15, 85);
         lastPct = p;
         codePane.style.flex = `0 0 ${p}%`;
+        shell.style.setProperty("--split-pct", `${String(p)}%`);
     }
     function stop() {
         dragging = false;
@@ -737,10 +1383,118 @@ function wireSplitter(storageSplit, shell, codePane, gutter, initialPct) {
 }
 const STORAGE_SPLIT_PCT = "commentray.codeCommentrayStatic.splitPct";
 const STORAGE_WRAP_LINES = "commentray.codeCommentrayStatic.wrap";
+const STORAGE_DUAL_MOBILE_PANE = "commentray.codeCommentrayStatic.dualMobilePane";
+/** Matches `code-browser.ts` `@media (max-width: 767px)` (dual column from 768px up). */
+const DUAL_MOBILE_SINGLE_PANE_MQ = "(max-width: 767px)";
+function normalizedDualMobilePane(v) {
+    return v === "code" ? "code" : "doc";
+}
+/** When the commentary pane is visible, (re)run Mermaid so diagrams are not laid out under display:none. */
+function scheduleMermaidWhenDualDocPaneVisible(shell, mq) {
+    const kick = () => {
+        if (shell.getAttribute("data-layout") !== "dual")
+            return;
+        if (!mq.matches)
+            return;
+        if (normalizedDualMobilePane(shell.getAttribute("data-dual-mobile-pane")) !== "doc")
+            return;
+        const docBody = document.getElementById("doc-pane-body");
+        if (!(docBody instanceof HTMLElement))
+            return;
+        runMermaidOnFreshDocNodes(docBody);
+    };
+    queueMicrotask(() => {
+        kick();
+        requestAnimationFrame(() => {
+            kick();
+            requestAnimationFrame(kick);
+        });
+    });
+}
+function wireDualMobilePaneFlipScrollAffordance(primaryFlip, scrollFlip, mq) {
+    const hideScroll = () => {
+        scrollFlip.hidden = true;
+        scrollFlip.classList.remove("is-visible");
+    };
+    const showScroll = () => {
+        scrollFlip.hidden = false;
+        scrollFlip.classList.add("is-visible");
+    };
+    /** Prefer geometry over IntersectionObserver: a sliver “intersecting” the viewport is still unusable. */
+    const tick = () => {
+        if (!mq.matches) {
+            hideScroll();
+            return;
+        }
+        const r = primaryFlip.getBoundingClientRect();
+        const vh = globalThis.innerHeight;
+        const margin = 10;
+        const offScreen = r.bottom < margin || r.top > vh - margin;
+        if (offScreen)
+            showScroll();
+        else
+            hideScroll();
+    };
+    globalThis.addEventListener("scroll", tick, { passive: true });
+    globalThis.addEventListener("resize", tick, { passive: true });
+    mq.addEventListener("change", tick);
+    globalThis.requestAnimationFrame(tick);
+}
+function wireDualMobilePaneFlip(shell, flipBtn, scrollRunners, flipScrollBtn) {
+    const mq = globalThis.matchMedia(DUAL_MOBILE_SINGLE_PANE_MQ);
+    function readStoredPane() {
+        return normalizedDualMobilePane(readWebStorageItem(localStorage, STORAGE_DUAL_MOBILE_PANE));
+    }
+    function applyForViewport() {
+        if (mq.matches) {
+            shell.setAttribute("data-dual-mobile-pane", readStoredPane());
+        }
+        else {
+            shell.removeAttribute("data-dual-mobile-pane");
+        }
+    }
+    const runFlip = () => {
+        if (!mq.matches)
+            return;
+        const cur = normalizedDualMobilePane(shell.getAttribute("data-dual-mobile-pane"));
+        const next = cur === "code" ? "doc" : "code";
+        if (next === "code") {
+            scrollRunners.prepareMobileFlipToCode();
+        }
+        else {
+            scrollRunners.prepareMobileFlipToDoc();
+        }
+        shell.setAttribute("data-dual-mobile-pane", next);
+        writeWebStorageItem(localStorage, STORAGE_DUAL_MOBILE_PANE, next);
+        globalThis.requestAnimationFrame(() => {
+            globalThis.requestAnimationFrame(() => {
+                if (next === "code") {
+                    scrollRunners.finishMobileFlipToCode();
+                }
+                else {
+                    scrollRunners.finishMobileFlipToDoc();
+                }
+            });
+        });
+        // Only here (not on every viewport apply): avoids redundant Mermaid passes on load/resize for the default commentary-first shell.
+        if (next === "doc") {
+            scheduleMermaidWhenDualDocPaneVisible(shell, mq);
+        }
+    };
+    flipBtn.addEventListener("click", runFlip);
+    if (flipScrollBtn) {
+        flipScrollBtn.addEventListener("click", runFlip);
+        wireDualMobilePaneFlipScrollAffordance(flipBtn, flipScrollBtn, mq);
+    }
+    mq.addEventListener("change", applyForViewport);
+    applyForViewport();
+}
 function wireStretchLayoutChrome(codePane) {
     const wrapCb = document.getElementById("wrap-lines");
     if (wrapCb) {
-        wireWrapToggle(STORAGE_WRAP_LINES, codePane, wrapCb);
+        wireWrapToggle(STORAGE_WRAP_LINES, codePane, wrapCb, () => {
+            globalThis.dispatchEvent(new Event("resize"));
+        });
     }
 }
 function parseMultiAnglePayload(script) {
@@ -805,7 +1559,46 @@ function initialCommentrayScopePathState(shell, scope, filePathLabel, commentray
         : [filePathLabel, commentrayPathLabel].filter((s) => s.trim().length > 0).join("\n");
     return { documentedPairs, pathRowsForOrdering, pathBlobWide };
 }
-function wireDualPaneNavSearchFetch(navSearchUrl, indexState, mutable, rebuildSearcher, searchInput) {
+/**
+ * Fetched `commentray-nav-search.json` sometimes omits `staticBrowseUrl` on pairs; the hub embed
+ * carries browse URLs from the same build — merge so search hits open `_site/browse/…`, not GitHub.
+ */
+function mergeFetchedDocumentedPairsWithEmbeddedBrowse(embedded, fetched) {
+    if (fetched.length === 0)
+        return embedded;
+    if (embedded.length === 0)
+        return fetched;
+    const browseByCr = new Map();
+    for (const p of embedded) {
+        const b = (p.staticBrowseUrl ?? "").trim();
+        if (b.length === 0)
+            continue;
+        browseByCr.set(normPosixPath(p.commentrayPath), b);
+    }
+    return fetched.map((p) => {
+        const have = (p.staticBrowseUrl ?? "").trim();
+        if (have.length > 0)
+            return p;
+        const fromEmb = browseByCr.get(normPosixPath(p.commentrayPath));
+        if (fromEmb !== undefined && fromEmb.length > 0) {
+            return { ...p, staticBrowseUrl: fromEmb };
+        }
+        return p;
+    });
+}
+function resolvedNavSearchJsonUrl(shell) {
+    const raw = shell.getAttribute("data-nav-search-json-url")?.trim() ?? "";
+    if (raw.length === 0)
+        return "";
+    try {
+        return new URL(raw, globalThis.location.href).href;
+    }
+    catch {
+        return raw;
+    }
+}
+function wireDualPaneNavSearchFetch(shell, embeddedPairs, indexState, mutable, rebuildSearcher, searchInput) {
+    const navSearchUrl = resolvedNavSearchJsonUrl(shell);
     if (navSearchUrl.length === 0)
         return;
     void (async () => {
@@ -815,9 +1608,10 @@ function wireDualPaneNavSearchFetch(navSearchUrl, indexState, mutable, rebuildSe
                 return;
             const doc = (await res.json());
             const fetched = pairsFromJsonArray(doc.documentedPairs);
-            if (fetched.length > 0) {
-                indexState.documentedPairs = fetched;
-                mutable.documentedPairs = fetched;
+            const mergedPairs = mergeFetchedDocumentedPairsWithEmbeddedBrowse(embeddedPairs, fetched);
+            if (mergedPairs.length > 0) {
+                indexState.documentedPairs = mergedPairs;
+                mutable.documentedPairs = mergedPairs;
             }
             const nr = rowsFromNavSearchJson(doc);
             if (nr.length === 0)
@@ -837,10 +1631,9 @@ function wireDualPaneNavSearchFetch(navSearchUrl, indexState, mutable, rebuildSe
     })();
 }
 function wireDualPaneMultiAngleAndScroll(args) {
-    const { codePane, docScrollEl, docBody, shell, scrollLinks, multiPayload, mutable, rebuildSearcher, searchInput, searchResults, } = args;
-    const activeLinks = { current: scrollLinks };
+    const { codePane, docScrollEl, docBody, shell, scrollLinksRef, multiPayload, mutable, rebuildSearcher, searchInput, searchResults, requestBlockRayRedraw, } = args;
     if (multiPayload) {
-        wireBlockAwareScrollSync(codePane, docScrollEl, () => activeLinks.current);
+        const runners = wireBlockAwareScrollSync(codePane, docScrollEl, () => scrollLinksRef.current);
         const angleSel = document.getElementById("angle-select");
         if (angleSel && docBody) {
             angleSel.addEventListener("change", () => {
@@ -848,29 +1641,56 @@ function wireDualPaneMultiAngleAndScroll(args) {
                 if (!a)
                     return;
                 docBody.innerHTML = decodeBase64Utf8(a.docInnerHtmlB64);
+                runMermaidOnFreshDocNodes(docBody);
+                rewriteHubRelativeBrowseAnchorsIn(docBody);
                 mutable.rawMd = decodeBase64Utf8(a.rawMdB64);
                 mutable.mdLines = mutable.rawMd.split("\n");
                 mutable.commentrayPathLabel = a.commentrayPathForSearch;
                 rebuildSearcher();
-                activeLinks.current = parseScrollBlockLinksFromShell(a.scrollBlockLinksB64);
+                scrollLinksRef.current = parseScrollBlockLinksFromShell(a.scrollBlockLinksB64);
                 shell.setAttribute("data-scroll-block-links-b64", a.scrollBlockLinksB64);
                 shell.setAttribute("data-search-commentray-path", a.commentrayPathForSearch);
-                const gh = document.getElementById("toolbar-commentray-github");
-                if (gh instanceof HTMLAnchorElement && a.commentrayOnGithubUrl?.trim()) {
-                    gh.href = a.commentrayOnGithubUrl.trim();
+                const docPathEl = document.getElementById("nav-rail-doc-path");
+                if (docPathEl) {
+                    const path = a.commentrayPathForSearch.trim();
+                    docPathEl.textContent = path.length > 0 ? path : "—";
+                    if (path.length > 0)
+                        docPathEl.setAttribute("title", path);
+                    else
+                        docPathEl.removeAttribute("title");
+                }
+                const browse = a.staticBrowseUrl?.trim() ?? "";
+                if (browse.length > 0) {
+                    const resolved = staticBrowseHrefForShellDataAttribute(browse, globalThis.location.pathname, globalThis.location.origin);
+                    shell.setAttribute("data-commentray-pair-browse-href", resolved);
+                }
+                else {
+                    const ghu = a.commentrayOnGithubUrl?.trim();
+                    if (ghu) {
+                        shell.setAttribute("data-commentray-pair-browse-href", ghu);
+                    }
+                    else {
+                        shell.removeAttribute("data-commentray-pair-browse-href");
+                    }
                 }
                 searchInput.value = "";
                 searchResults.innerHTML = "";
                 searchResults.hidden = true;
+                requestBlockRayRedraw?.();
+                globalThis.requestAnimationFrame(() => {
+                    requestBlockRayRedraw?.();
+                    globalThis.requestAnimationFrame(() => {
+                        requestBlockRayRedraw?.();
+                    });
+                });
             });
         }
-        return;
+        return runners;
     }
-    if (scrollLinks.length > 0) {
-        wireBlockAwareScrollSync(codePane, docScrollEl, () => scrollLinks);
-        return;
+    if (scrollLinksRef.current.length > 0) {
+        return wireBlockAwareScrollSync(codePane, docScrollEl, () => scrollLinksRef.current);
     }
-    wireProportionalScrollSync(codePane, docScrollEl);
+    return wireProportionalScrollSync(codePane, docScrollEl);
 }
 function wireDualPaneCommentrayLocationHash(docScrollEl, mdLineCount) {
     function applyCommentrayLocationHash() {
@@ -887,15 +1707,12 @@ function wireDualPaneCommentrayLocationHash(docScrollEl, mdLineCount) {
         globalThis.requestAnimationFrame(applyCommentrayLocationHash);
     });
 }
-function wireDualPaneCodeBrowser(shell, codePane) {
-    const dom = readDualPaneDomBundle();
-    if (!dom)
-        return;
-    const { docBody, docScrollEl, gutter, wrapCb, searchInput, searchClear, searchResults } = dom;
+function buildDualPaneSearcherBundle(shell, codePane) {
     const { rawCodeB64, rawMdB64 } = readEmbeddedRawB64Strings(shell, codePane);
     const rawCode = decodeBase64Utf8(rawCodeB64);
     const rawMd = decodeBase64Utf8(rawMdB64);
     const scrollLinks = parseScrollBlockLinksFromShell(shell.getAttribute("data-scroll-block-links-b64") || "");
+    const scrollLinksRef = { current: scrollLinks };
     const { scope, filePathLabel, commentrayPathLabel } = readSearchScopeFromShell(shell);
     const pathInit = initialCommentrayScopePathState(shell, scope, filePathLabel, commentrayPathLabel);
     const indexState = {
@@ -924,40 +1741,184 @@ function wireDualPaneCodeBrowser(shell, codePane) {
         }));
     }
     rebuildSearcher();
-    wireSearchUi({
+    return {
+        rawCode,
+        rawMd,
+        scrollLinksRef,
         scope,
         filePathLabel,
+        commentrayPathLabel,
+        pathInit,
+        indexState,
         mutable,
-        rawCode,
+        rebuildSearcher,
+    };
+}
+function wireDualPaneCodeBrowser(shell, codePane) {
+    const dom = readDualPaneDomBundle();
+    if (!dom)
+        return;
+    const { docBody, docScrollEl, gutter, wrapCb, searchInput, searchClear, searchResults } = dom;
+    const bundle = buildDualPaneSearcherBundle(shell, codePane);
+    rewriteHubRelativeBrowseAnchorsIn(document);
+    wireSearchUi({
+        scope: bundle.scope,
+        filePathLabel: bundle.filePathLabel,
+        mutable: bundle.mutable,
+        rawCode: bundle.rawCode,
         searchInput,
         searchClear,
         searchResults,
         docScrollEl,
     });
-    const navSearchUrl = shell.getAttribute("data-nav-search-json-url")?.trim() ?? "";
-    wireDualPaneNavSearchFetch(navSearchUrl, indexState, mutable, rebuildSearcher, searchInput);
-    const pct0 = parseFloat(readWebStorageItem(localStorage, STORAGE_SPLIT_PCT) || "50");
-    const pct = clamp(Number.isFinite(pct0) ? pct0 : 50, 15, 85);
+    wireDualPaneNavSearchFetch(shell, bundle.pathInit.documentedPairs, bundle.indexState, bundle.mutable, bundle.rebuildSearcher, searchInput);
+    const pct0 = parseFloat(readWebStorageItem(localStorage, STORAGE_SPLIT_PCT) || "46");
+    const pct = clamp(Number.isFinite(pct0) ? pct0 : 46, 15, 85);
     codePane.style.flex = `0 0 ${pct}%`;
-    wireWrapToggle(STORAGE_WRAP_LINES, codePane, wrapCb);
+    shell.style.setProperty("--split-pct", `${String(pct)}%`);
+    const docPaneEl = document.getElementById("doc-pane");
+    const docPaneForWrap = docPaneEl instanceof HTMLElement ? docPaneEl : null;
+    const blockRayRedraw = {};
+    wireWrapToggle(STORAGE_WRAP_LINES, codePane, wrapCb, () => {
+        blockRayRedraw.request?.();
+        codePane.dispatchEvent(new Event("scroll"));
+        docScrollEl.dispatchEvent(new Event("scroll"));
+    }, docPaneForWrap, docBody);
     wireSplitter(STORAGE_SPLIT_PCT, shell, codePane, gutter, pct);
     const multiScript = document.getElementById("commentray-multi-angle-b64");
     const multiPayload = parseMultiAnglePayload(multiScript);
-    wireDualPaneMultiAngleAndScroll({
+    const shouldWireBlockRays = multiPayload !== null || bundle.scrollLinksRef.current.length > 0;
+    const requestBlockRayRedraw = shouldWireBlockRays
+        ? wireBlockRayConnectors({
+            gutter,
+            codePane,
+            docScrollEl,
+            getLinks: () => bundle.scrollLinksRef.current,
+            probeTopSourceLine1Based: () => probeCodeLine1FromViewport(codePane),
+        })
+        : undefined;
+    blockRayRedraw.request = requestBlockRayRedraw;
+    const scrollRunners = wireDualPaneMultiAngleAndScroll({
         codePane,
         docScrollEl,
         docBody,
         shell,
-        scrollLinks,
+        scrollLinksRef: bundle.scrollLinksRef,
         multiPayload,
-        mutable,
-        rebuildSearcher,
+        mutable: bundle.mutable,
+        rebuildSearcher: bundle.rebuildSearcher,
         searchInput,
         searchResults,
+        requestBlockRayRedraw,
     });
-    wireDualPaneCommentrayLocationHash(docScrollEl, () => mutable.mdLines.length);
+    const flipBtn = document.getElementById("mobile-pane-flip");
+    const flipScrollBtn = document.getElementById("mobile-pane-flip-scroll");
+    if (flipBtn instanceof HTMLButtonElement) {
+        wireDualMobilePaneFlip(shell, flipBtn, scrollRunners, flipScrollBtn instanceof HTMLButtonElement ? flipScrollBtn : null);
+    }
+    wireDualPaneCommentrayLocationHash(docScrollEl, () => bundle.mutable.mdLines.length);
+}
+function commentrayThemeModeLabel(mode) {
+    if (mode === "light")
+        return "Light";
+    if (mode === "dark")
+        return "Dark";
+    return "System";
+}
+function setCommentrayThemeTriggerHints(trigger, mode) {
+    const label = commentrayThemeModeLabel(mode);
+    trigger.setAttribute("aria-label", `Color theme: ${label}. Left-click opens the menu. Right-click cycles System, Light, and Dark.`);
+    trigger.title = `Appearance: ${label} — left-click menu, right-click cycle`;
+}
+function wireColorThemeToolbar() {
+    const wrapEl = document.querySelector(".toolbar-theme");
+    const triggerEl = document.getElementById("commentray-theme-trigger");
+    const menuEl = document.getElementById("commentray-theme-menu");
+    if (!wrapEl || !(triggerEl instanceof HTMLButtonElement) || !(menuEl instanceof HTMLElement))
+        return;
+    const themeToolbarWrap = wrapEl;
+    const themeButton = triggerEl;
+    const themeMenu = menuEl;
+    let currentMode = parseCommentrayColorThemeMode(readWebStorageItem(localStorage, COMMENTRAY_COLOR_THEME_STORAGE_KEY));
+    applyCommentrayColorTheme(currentMode);
+    let menuOpen = false;
+    function syncUi() {
+        themeButton.dataset.commentrayTriggerMode = currentMode;
+        themeButton.setAttribute("aria-expanded", menuOpen ? "true" : "false");
+        setCommentrayThemeTriggerHints(themeButton, currentMode);
+        for (const el of themeMenu.querySelectorAll("[data-commentray-theme-value]")) {
+            const v = parseCommentrayColorThemeMode(el.dataset.commentrayThemeValue ?? "");
+            el.setAttribute("aria-checked", v === currentMode ? "true" : "false");
+        }
+    }
+    function openMenu() {
+        menuOpen = true;
+        themeMenu.removeAttribute("hidden");
+        syncUi();
+        const checked = themeMenu.querySelector('[role="menuitemradio"][aria-checked="true"]');
+        (checked ?? themeMenu.querySelector('[role="menuitemradio"]'))?.focus();
+    }
+    function closeMenu() {
+        menuOpen = false;
+        themeMenu.setAttribute("hidden", "");
+        syncUi();
+    }
+    function persistAndApply(mode) {
+        currentMode = mode;
+        writeWebStorageItem(localStorage, COMMENTRAY_COLOR_THEME_STORAGE_KEY, mode);
+        applyCommentrayColorTheme(mode);
+        syncUi();
+    }
+    themeButton.addEventListener("click", (ev) => {
+        ev.preventDefault();
+        ev.stopPropagation();
+        if (menuOpen) {
+            closeMenu();
+        }
+        else {
+            openMenu();
+        }
+    });
+    themeButton.addEventListener("contextmenu", (ev) => {
+        ev.preventDefault();
+        if (menuOpen)
+            closeMenu();
+        persistAndApply(nextCommentrayColorThemeMode(currentMode));
+    });
+    for (const item of themeMenu.querySelectorAll("[data-commentray-theme-value]")) {
+        item.addEventListener("click", (ev) => {
+            ev.stopPropagation();
+            const mode = parseCommentrayColorThemeMode(item.dataset.commentrayThemeValue ?? "");
+            persistAndApply(mode);
+            closeMenu();
+            themeButton.focus();
+        });
+    }
+    function onDocumentPointerDown(ev) {
+        if (!menuOpen)
+            return;
+        const t = ev.target;
+        if (!(t instanceof Node))
+            return;
+        if (themeToolbarWrap.contains(t))
+            return;
+        closeMenu();
+    }
+    function onDocumentKeydown(ev) {
+        if (!menuOpen || ev.key !== "Escape")
+            return;
+        ev.preventDefault();
+        ev.stopPropagation();
+        closeMenu();
+        themeButton.focus();
+    }
+    document.addEventListener("mousedown", onDocumentPointerDown, true);
+    document.addEventListener("touchstart", onDocumentPointerDown, true);
+    document.addEventListener("keydown", onDocumentKeydown, true);
+    syncUi();
 }
 function main() {
+    wireColorThemeToolbar();
     wireDocumentedFilesTree();
     const shell = document.getElementById("shell");
     const codePane = document.getElementById("code-pane");