@commentray/core 0.3.5 → 0.3.6

package/dist/blocks.d.ts

@@ -63,6 +63,20 @@ export declare function createBlockForRange(input: CreateBlockForRangeInput): Cr
  * single blank-line separator regardless of how the existing content ended.
  */
 export declare function appendBlockToCommentray(existing: string, blockMarkdown: string): string;
+/**
+ * Inserts `blockMarkdown` into companion markdown based on source-region order.
+ *
+ * The insertion point is chosen from existing `<!-- commentray:block id=... -->`
+ * sections: the new block is inserted before the first section whose marker id
+ * appears *after* `markerId` in source order. If ordering cannot be resolved,
+ * falls back to {@link appendBlockToCommentray}.
+ */
+export declare function insertBlockBySourceMarkerOrder(args: {
+    existingCommentray: string;
+    blockMarkdown: string;
+    sourceText: string;
+    markerId: string;
+}): string;
 export type AddBlockToIndexInput = {
     sourcePath: string;
     commentrayPath: string;

package/dist/blocks.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"blocks.d.ts","sourceRoot":"","sources":["../src/blocks.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,eAAe,EAAE,eAAe,EAAwB,MAAM,YAAY,CAAC;AAEzF,iEAAiE;AACjE,MAAM,MAAM,UAAU,GAAG;IACvB,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,EAAE,MAAM,CAAC;CACjB,CAAC;AAEF,MAAM,MAAM,wBAAwB,GAAG;IACrC;;;;OAIG;IACH,UAAU,EAAE,MAAM,CAAC;IACnB,kDAAkD;IAClD,UAAU,EAAE,MAAM,CAAC;IACnB,6CAA6C;IAC7C,KAAK,EAAE,UAAU,CAAC;IAClB,2DAA2D;IAC3D,EAAE,CAAC,EAAE,MAAM,CAAC;IACZ,4DAA4D;IAC5D,GAAG,CAAC,EAAE,MAAM,MAAM,CAAC;CACpB,CAAC;AAEF,MAAM,MAAM,YAAY,GAAG;IACzB,KAAK,EAAE,eAAe,CAAC;IACvB;;;;OAIG;IACH,QAAQ,EAAE,MAAM,CAAC;IACjB;;;OAGG;IACH,eAAe,EAAE,MAAM,CAAC;CACzB,CAAC;AAMF;;;;GAIG;AACH,MAAM,MAAM,6CAA6C,GAAG;IAC1D,UAAU,EAAE,MAAM,CAAC;IACnB,KAAK,EAAE,UAAU,CAAC;IAClB,UAAU,EAAE,MAAM,CAAC;IACnB,mFAAmF;IACnF,QAAQ,EAAE,MAAM,CAAC;CAClB,CAAC;AAEF,MAAM,MAAM,8CAA8C,GAAG;IAC3D,UAAU,EAAE,MAAM,CAAC;IACnB,0FAA0F;IAC1F,UAAU,EAAE,UAAU,CAAC;CACxB,CAAC;AAEF;;;;GAIG;AACH,wBAAgB,wCAAwC,CACtD,KAAK,EAAE,6CAA6C,GACnD,8CAA8C,CAmBhD;AAED,wBAAgB,mBAAmB,CAAC,KAAK,EAAE,wBAAwB,GAAG,YAAY,CASjF;AAED;;;GAGG;AACH,wBAAgB,uBAAuB,CAAC,QAAQ,EAAE,MAAM,EAAE,aAAa,EAAE,MAAM,GAAG,MAAM,CAKvF;AAED,MAAM,MAAM,oBAAoB,GAAG;IACjC,UAAU,EAAE,MAAM,CAAC;IACnB,cAAc,EAAE,MAAM,CAAC;IACvB,KAAK,EAAE,eAAe,CAAC;CACxB,CAAC;AAEF;;;;;GAKG;AACH,wBAAgB,eAAe,CAC7B,KAAK,EAAE,eAAe,EACtB,KAAK,EAAE,oBAAoB,GAC1B,eAAe,CAuBjB;AAKD;;;;GAIG;AACH,wBAAgB,eAAe,CAAC,GAAG,GAAE,MAAM,MAAoB,GAAG,MAAM,CAMvE"}
+{"version":3,"file":"blocks.d.ts","sourceRoot":"","sources":["../src/blocks.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,eAAe,EAAE,eAAe,EAAwB,MAAM,YAAY,CAAC;AAEzF,iEAAiE;AACjE,MAAM,MAAM,UAAU,GAAG;IACvB,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,EAAE,MAAM,CAAC;CACjB,CAAC;AAEF,MAAM,MAAM,wBAAwB,GAAG;IACrC;;;;OAIG;IACH,UAAU,EAAE,MAAM,CAAC;IACnB,kDAAkD;IAClD,UAAU,EAAE,MAAM,CAAC;IACnB,6CAA6C;IAC7C,KAAK,EAAE,UAAU,CAAC;IAClB,2DAA2D;IAC3D,EAAE,CAAC,EAAE,MAAM,CAAC;IACZ,4DAA4D;IAC5D,GAAG,CAAC,EAAE,MAAM,MAAM,CAAC;CACpB,CAAC;AAEF,MAAM,MAAM,YAAY,GAAG;IACzB,KAAK,EAAE,eAAe,CAAC;IACvB;;;;OAIG;IACH,QAAQ,EAAE,MAAM,CAAC;IACjB;;;OAGG;IACH,eAAe,EAAE,MAAM,CAAC;CACzB,CAAC;AAMF;;;;GAIG;AACH,MAAM,MAAM,6CAA6C,GAAG;IAC1D,UAAU,EAAE,MAAM,CAAC;IACnB,KAAK,EAAE,UAAU,CAAC;IAClB,UAAU,EAAE,MAAM,CAAC;IACnB,mFAAmF;IACnF,QAAQ,EAAE,MAAM,CAAC;CAClB,CAAC;AAEF,MAAM,MAAM,8CAA8C,GAAG;IAC3D,UAAU,EAAE,MAAM,CAAC;IACnB,0FAA0F;IAC1F,UAAU,EAAE,UAAU,CAAC;CACxB,CAAC;AAEF;;;;GAIG;AACH,wBAAgB,wCAAwC,CACtD,KAAK,EAAE,6CAA6C,GACnD,8CAA8C,CAmBhD;AAED,wBAAgB,mBAAmB,CAAC,KAAK,EAAE,wBAAwB,GAAG,YAAY,CASjF;AAED;;;GAGG;AACH,wBAAgB,uBAAuB,CAAC,QAAQ,EAAE,MAAM,EAAE,aAAa,EAAE,MAAM,GAAG,MAAM,CAKvF;AAOD;;;;;;;GAOG;AACH,wBAAgB,8BAA8B,CAAC,IAAI,EAAE;IACnD,kBAAkB,EAAE,MAAM,CAAC;IAC3B,aAAa,EAAE,MAAM,CAAC;IACtB,UAAU,EAAE,MAAM,CAAC;IACnB,QAAQ,EAAE,MAAM,CAAC;CAClB,GAAG,MAAM,CAgCT;AA0CD,MAAM,MAAM,oBAAoB,GAAG;IACjC,UAAU,EAAE,MAAM,CAAC;IACnB,cAAc,EAAE,MAAM,CAAC;IACvB,KAAK,EAAE,eAAe,CAAC;CACxB,CAAC;AAEF;;;;;GAKG;AACH,wBAAgB,eAAe,CAC7B,KAAK,EAAE,eAAe,EACtB,KAAK,EAAE,oBAAoB,GAC1B,eAAe,CAuBjB;AAKD;;;;GAIG;AACH,wBAAgB,eAAe,CAAC,GAAG,GAAE,MAAM,MAAoB,GAAG,MAAM,CAMvE"}

package/dist/blocks.js

@@ -1,8 +1,8 @@
 import { buildCommentraySnippetV1 } from "./block-snippet.js";
 import { formatMarkerAnchor } from "./anchors.js";
 import { assertValidMarkerId } from "./marker-ids.js";
-import { leadingIndentOfLine } from "./region-marker-convert.js";
-import { commentrayRegionInsertions } from "./source-markers.js";
+import { findCommentrayMarkerPairs, leadingIndentOfLine } from "./region-marker-convert.js";
+import { commentrayRegionInsertions, parseCommentrayRegionBoundary } from "./source-markers.js";
 const BLOCK_MARKER_PREFIX = "<!-- commentray:block id=";
 const BLOCK_MARKER_SUFFIX = " -->";
 const CARET_PLACEHOLDER = "_(write commentary here)_";
@@ -50,6 +50,86 @@ export function appendBlockToCommentray(existing, blockMarkdown) {
     const fragment = blockMarkdown.endsWith("\n") ? blockMarkdown : `${blockMarkdown}\n`;
     return `${body}${fragment}`;
 }
+/**
+ * Inserts `blockMarkdown` into companion markdown based on source-region order.
+ *
+ * The insertion point is chosen from existing `<!-- commentray:block id=... -->`
+ * sections: the new block is inserted before the first section whose marker id
+ * appears *after* `markerId` in source order. If ordering cannot be resolved,
+ * falls back to {@link appendBlockToCommentray}.
+ */
+export function insertBlockBySourceMarkerOrder(args) {
+    const markerId = assertValidMarkerId(args.markerId);
+    const order = markerStartOrderMap(args.sourceText);
+    const targetRank = order.get(markerId);
+    if (targetRank === undefined) {
+        return appendBlockToCommentray(args.existingCommentray, args.blockMarkdown);
+    }
+    const hits = findCommentrayBlockMarkerHits(args.existingCommentray);
+    if (hits.length === 0) {
+        return appendBlockToCommentray(args.existingCommentray, args.blockMarkdown);
+    }
+    let insertionIndex = null;
+    for (const hit of hits) {
+        const rank = order.get(hit.id);
+        if (rank === undefined || rank <= targetRank)
+            continue;
+        insertionIndex = hit.start;
+        break;
+    }
+    if (insertionIndex === null) {
+        return appendBlockToCommentray(args.existingCommentray, args.blockMarkdown);
+    }
+    const left = args.existingCommentray.slice(0, insertionIndex).trimEnd();
+    const right = args.existingCommentray.slice(insertionIndex).trimStart();
+    const fragment = args.blockMarkdown.endsWith("\n")
+        ? args.blockMarkdown
+        : `${args.blockMarkdown}\n`;
+    const leftPart = left.length === 0 ? "" : `${left}\n\n`;
+    const rightPart = right.length === 0 ? "" : `\n\n${right}`;
+    return `${leftPart}${fragment.trimEnd()}${rightPart}\n`;
+}
+function markerStartOrderMap(sourceText) {
+    const order = new Map();
+    let next = 0;
+    // Prefer first explicit start-boundary position so ordering still works while a region is mid-edit.
+    const lines = sourceText.replaceAll("\r\n", "\n").split("\n");
+    for (const line of lines) {
+        const hit = parseCommentrayRegionBoundary(line);
+        if (!hit || hit.kind !== "start")
+            continue;
+        if (order.has(hit.id))
+            continue;
+        order.set(hit.id, next++);
+    }
+    // Keep pair-based fallback for any id represented by a full pair but missing from start scan.
+    for (const pair of findCommentrayMarkerPairs(sourceText)) {
+        if (order.has(pair.id))
+            continue;
+        order.set(pair.id, next++);
+    }
+    return order;
+}
+function findCommentrayBlockMarkerHits(markdown) {
+    const hits = [];
+    const markerRe = /<!--\s*commentray:block\s+id=([a-z0-9](?:[a-z0-9_-]{0,62}[a-z0-9])?)\s*-->/gi;
+    for (const m of markdown.matchAll(markerRe)) {
+        const idRaw = m[1];
+        if (idRaw === undefined)
+            continue;
+        const start = m.index ?? -1;
+        if (start < 0)
+            continue;
+        try {
+            hits.push({ id: assertValidMarkerId(idRaw), start });
+        }
+        catch {
+            /* ignore malformed marker ids */
+        }
+    }
+    hits.sort((a, b) => a.start - b.start);
+    return hits;
+}
 /**
  * Return a new index with the block added under the given source file.
  * The source entry is created lazily when it does not exist yet. Throws

package/dist/blocks.js.map

@@ -1 +1 @@
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package/dist/commentray-active-editor-ui-context.d.ts

@@ -15,5 +15,6 @@ export declare function commentrayActiveEditorUiFlags(input: {
     normalizedRepoRelativePath: string;
     storageDir: string;
     repoRoot: string;
+    staticSiteCommentrayMarkdownFile?: string;
 }): CommentrayActiveEditorUiFlags;
 //# sourceMappingURL=commentray-active-editor-ui-context.d.ts.map

package/dist/commentray-active-editor-ui-context.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"commentray-active-editor-ui-context.d.ts","sourceRoot":"","sources":["../src/commentray-active-editor-ui-context.ts"],"names":[],"mappings":"AAGA,+GAA+G;AAC/G,wBAAgB,6BAA6B,CAAC,UAAU,EAAE,MAAM,GAAG,MAAM,CAGxE;AAED,MAAM,MAAM,6BAA6B,GAAG;IAC1C,mDAAmD;IACnD,wBAAwB,EAAE,OAAO,CAAC;IAClC,2EAA2E;IAC3E,6BAA6B,EAAE,OAAO,CAAC;CACxC,CAAC;AAEF;;;;GAIG;AACH,wBAAgB,6BAA6B,CAAC,KAAK,EAAE;IACnD,0BAA0B,EAAE,MAAM,CAAC;IACnC,UAAU,EAAE,MAAM,CAAC;IACnB,QAAQ,EAAE,MAAM,CAAC;CAClB,GAAG,6BAA6B,CAgBhC"}
+{"version":3,"file":"commentray-active-editor-ui-context.d.ts","sourceRoot":"","sources":["../src/commentray-active-editor-ui-context.ts"],"names":[],"mappings":"AAGA,+GAA+G;AAC/G,wBAAgB,6BAA6B,CAAC,UAAU,EAAE,MAAM,GAAG,MAAM,CAGxE;AAED,MAAM,MAAM,6BAA6B,GAAG;IAC1C,mDAAmD;IACnD,wBAAwB,EAAE,OAAO,CAAC;IAClC,2EAA2E;IAC3E,6BAA6B,EAAE,OAAO,CAAC;CACxC,CAAC;AAEF;;;;GAIG;AACH,wBAAgB,6BAA6B,CAAC,KAAK,EAAE;IACnD,0BAA0B,EAAE,MAAM,CAAC;IACnC,UAAU,EAAE,MAAM,CAAC;IACnB,QAAQ,EAAE,MAAM,CAAC;IACjB,gCAAgC,CAAC,EAAE,MAAM,CAAC;CAC3C,GAAG,6BAA6B,CA0BhC"}

package/dist/commentray-active-editor-ui-context.js

@@ -12,8 +12,16 @@ export function commentrayStorageSourcePrefix(storageDir) {
  */
 export function commentrayActiveEditorUiFlags(input) {
     const normalized = normalizeRepoRelativePath(input.normalizedRepoRelativePath.replaceAll("\\", "/"));
+    const configuredStaticCompanion = input.staticSiteCommentrayMarkdownFile
+        ? normalizeRepoRelativePath(input.staticSiteCommentrayMarkdownFile.replaceAll("\\", "/"))
+        : "";
     const sourcePrefix = commentrayStorageSourcePrefix(input.storageDir);
     if (!normalized.startsWith(sourcePrefix)) {
+        if (configuredStaticCompanion.length > 0 &&
+            normalized === configuredStaticCompanion &&
+            normalized.endsWith(".md")) {
+            return { underCompanionSourceTree: true, isResolvableCompanionMarkdown: true };
+        }
         return { underCompanionSourceTree: false, isResolvableCompanionMarkdown: false };
     }
     const relFromSourceDir = normalized.slice(sourcePrefix.length);

package/dist/commentray-active-editor-ui-context.js.map

@@ -1 +1 @@
-{"version":3,"file":"commentray-active-editor-ui-context.js","sourceRoot":"","sources":["../src/commentray-active-editor-ui-context.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,2BAA2B,EAAE,MAAM,4BAA4B,CAAC;AACzE,OAAO,EAAE,6BAA6B,EAAE,yBAAyB,EAAE,MAAM,YAAY,CAAC;AAEtF,+GAA+G;AAC/G,MAAM,UAAU,6BAA6B,CAAC,UAAkB;IAC9D,MAAM,EAAE,GAAG,UAAU,CAAC,UAAU,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC;IAC5C,OAAO,GAAG,EAAE,UAAU,CAAC;AACzB,CAAC;AASD;;;;GAIG;AACH,MAAM,UAAU,6BAA6B,CAAC,KAI7C;IACC,MAAM,UAAU,GAAG,yBAAyB,CAC1C,KAAK,CAAC,0BAA0B,CAAC,UAAU,CAAC,IAAI,EAAE,GAAG,CAAC,CACvD,CAAC;IACF,MAAM,YAAY,GAAG,6BAA6B,CAAC,KAAK,CAAC,UAAU,CAAC,CAAC;IACrE,IAAI,CAAC,UAAU,CAAC,UAAU,CAAC,YAAY,CAAC,EAAE,CAAC;QACzC,OAAO,EAAE,wBAAwB,EAAE,KAAK,EAAE,6BAA6B,EAAE,KAAK,EAAE,CAAC;IACnF,CAAC;IACD,MAAM,gBAAgB,GAAG,UAAU,CAAC,KAAK,CAAC,YAAY,CAAC,MAAM,CAAC,CAAC;IAC/D,MAAM,WAAW,GAAG,yBAAyB,CAAC,KAAK,CAAC,UAAU,CAAC,UAAU,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC,CAAC;IACtF,MAAM,QAAQ,GAAG,6BAA6B,CAAC,KAAK,CAAC,QAAQ,EAAE,KAAK,CAAC,UAAU,CAAC,CAAC;IACjF,MAAM,IAAI,GAAG,2BAA2B,CAAC,WAAW,EAAE,gBAAgB,EAAE,QAAQ,CAAC,CAAC;IAClF,OAAO;QACL,wBAAwB,EAAE,IAAI;QAC9B,6BAA6B,EAAE,OAAO,CAAC,IAAI,CAAC;KAC7C,CAAC;AACJ,CAAC"}
+{"version":3,"file":"commentray-active-editor-ui-context.js","sourceRoot":"","sources":["../src/commentray-active-editor-ui-context.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,2BAA2B,EAAE,MAAM,4BAA4B,CAAC;AACzE,OAAO,EAAE,6BAA6B,EAAE,yBAAyB,EAAE,MAAM,YAAY,CAAC;AAEtF,+GAA+G;AAC/G,MAAM,UAAU,6BAA6B,CAAC,UAAkB;IAC9D,MAAM,EAAE,GAAG,UAAU,CAAC,UAAU,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC;IAC5C,OAAO,GAAG,EAAE,UAAU,CAAC;AACzB,CAAC;AASD;;;;GAIG;AACH,MAAM,UAAU,6BAA6B,CAAC,KAK7C;IACC,MAAM,UAAU,GAAG,yBAAyB,CAC1C,KAAK,CAAC,0BAA0B,CAAC,UAAU,CAAC,IAAI,EAAE,GAAG,CAAC,CACvD,CAAC;IACF,MAAM,yBAAyB,GAAG,KAAK,CAAC,gCAAgC;QACtE,CAAC,CAAC,yBAAyB,CAAC,KAAK,CAAC,gCAAgC,CAAC,UAAU,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC;QACzF,CAAC,CAAC,EAAE,CAAC;IACP,MAAM,YAAY,GAAG,6BAA6B,CAAC,KAAK,CAAC,UAAU,CAAC,CAAC;IACrE,IAAI,CAAC,UAAU,CAAC,UAAU,CAAC,YAAY,CAAC,EAAE,CAAC;QACzC,IACE,yBAAyB,CAAC,MAAM,GAAG,CAAC;YACpC,UAAU,KAAK,yBAAyB;YACxC,UAAU,CAAC,QAAQ,CAAC,KAAK,CAAC,EAC1B,CAAC;YACD,OAAO,EAAE,wBAAwB,EAAE,IAAI,EAAE,6BAA6B,EAAE,IAAI,EAAE,CAAC;QACjF,CAAC;QACD,OAAO,EAAE,wBAAwB,EAAE,KAAK,EAAE,6BAA6B,EAAE,KAAK,EAAE,CAAC;IACnF,CAAC;IACD,MAAM,gBAAgB,GAAG,UAAU,CAAC,KAAK,CAAC,YAAY,CAAC,MAAM,CAAC,CAAC;IAC/D,MAAM,WAAW,GAAG,yBAAyB,CAAC,KAAK,CAAC,UAAU,CAAC,UAAU,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC,CAAC;IACtF,MAAM,QAAQ,GAAG,6BAA6B,CAAC,KAAK,CAAC,QAAQ,EAAE,KAAK,CAAC,UAAU,CAAC,CAAC;IACjF,MAAM,IAAI,GAAG,2BAA2B,CAAC,WAAW,EAAE,gBAAgB,EAAE,QAAQ,CAAC,CAAC;IAClF,OAAO;QACL,wBAAwB,EAAE,IAAI;QAC9B,6BAA6B,EAAE,OAAO,CAAC,IAAI,CAAC;KAC7C,CAAC;AACJ,CAAC"}

package/dist/companion-bootstrap.d.ts

@@ -0,0 +1,14 @@
+export type EnsureCompanionForSourceOptions = {
+    angleId?: string | null;
+    initialMarkdown?: string;
+    commentrayPath?: string;
+};
+export type EnsureCompanionForSourceResult = {
+    sourcePath: string;
+    commentrayPath: string;
+    createdMarkdown: boolean;
+    createdIndexEntry: boolean;
+};
+export declare function companionPlaceholderMarkdown(sourcePath?: string): string;
+export declare function ensureCompanionForSource(repoRoot: string, sourcePath: string, opts?: EnsureCompanionForSourceOptions): Promise<EnsureCompanionForSourceResult>;
+//# sourceMappingURL=companion-bootstrap.d.ts.map

package/dist/companion-bootstrap.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"companion-bootstrap.d.ts","sourceRoot":"","sources":["../src/companion-bootstrap.ts"],"names":[],"mappings":"AAUA,MAAM,MAAM,+BAA+B,GAAG;IAC5C,OAAO,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IACxB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,cAAc,CAAC,EAAE,MAAM,CAAC;CACzB,CAAC;AAEF,MAAM,MAAM,8BAA8B,GAAG;IAC3C,UAAU,EAAE,MAAM,CAAC;IACnB,cAAc,EAAE,MAAM,CAAC;IACvB,eAAe,EAAE,OAAO,CAAC;IACzB,iBAAiB,EAAE,OAAO,CAAC;CAC5B,CAAC;AAEF,wBAAgB,4BAA4B,CAAC,UAAU,CAAC,EAAE,MAAM,GAAG,MAAM,CAIxE;AAqBD,wBAAsB,wBAAwB,CAC5C,QAAQ,EAAE,MAAM,EAChB,UAAU,EAAE,MAAM,EAClB,IAAI,GAAE,+BAAoC,GACzC,OAAO,CAAC,8BAA8B,CAAC,CAqDzC"}

package/dist/companion-bootstrap.js

@@ -0,0 +1,72 @@
+import fs from "node:fs/promises";
+import path from "node:path";
+import { loadCommentrayConfig } from "./config.js";
+import { emptyIndex } from "./metadata.js";
+import { resolveCommentrayMarkdownPath } from "./commentray-path-resolution.js";
+import { normalizeRepoRelativePath } from "./paths.js";
+import { readIndex, writeIndex } from "./validate-project.js";
+export function companionPlaceholderMarkdown(sourcePath) {
+    const normalized = sourcePath?.trim();
+    if (!normalized)
+        return "# Commentray\n\n";
+    return `# ${normalized}\n\nWrite documentation for ${normalized} here.\n`;
+}
+async function pathExists(p) {
+    try {
+        await fs.access(p);
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
+function ensureEntryMatchesSource(entry, sourcePath) {
+    const existing = normalizeRepoRelativePath(entry.sourcePath);
+    const requested = normalizeRepoRelativePath(sourcePath);
+    if (existing !== requested) {
+        throw new Error(`commentray path ${entry.commentrayPath} is already indexed for ${entry.sourcePath}, not ${sourcePath}`);
+    }
+}
+export async function ensureCompanionForSource(repoRoot, sourcePath, opts = {}) {
+    const cfg = await loadCommentrayConfig(repoRoot);
+    const normalizedSourcePath = normalizeRepoRelativePath(sourcePath.replaceAll("\\", "/"));
+    const explicitCommentrayPath = opts.commentrayPath?.trim();
+    const commentrayPath = explicitCommentrayPath && explicitCommentrayPath.length > 0
+        ? normalizeRepoRelativePath(explicitCommentrayPath.replaceAll("\\", "/"))
+        : resolveCommentrayMarkdownPath(repoRoot, normalizedSourcePath, cfg, opts.angleId ?? undefined).commentrayPath;
+    const mdAbs = path.resolve(repoRoot, commentrayPath);
+    let createdMarkdown = false;
+    if (!(await pathExists(mdAbs))) {
+        await fs.mkdir(path.dirname(mdAbs), { recursive: true });
+        await fs.writeFile(mdAbs, opts.initialMarkdown ?? companionPlaceholderMarkdown(normalizedSourcePath), "utf8");
+        createdMarkdown = true;
+    }
+    let index = (await readIndex(repoRoot)) ?? emptyIndex();
+    const existing = index.byCommentrayPath[commentrayPath];
+    let createdIndexEntry = false;
+    if (!existing) {
+        index = {
+            ...index,
+            byCommentrayPath: {
+                ...index.byCommentrayPath,
+                [commentrayPath]: {
+                    sourcePath: normalizedSourcePath,
+                    commentrayPath,
+                    blocks: [],
+                },
+            },
+        };
+        await writeIndex(repoRoot, index);
+        createdIndexEntry = true;
+    }
+    else {
+        ensureEntryMatchesSource(existing, normalizedSourcePath);
+    }
+    return {
+        sourcePath: normalizedSourcePath,
+        commentrayPath,
+        createdMarkdown,
+        createdIndexEntry,
+    };
+}
+//# sourceMappingURL=companion-bootstrap.js.map

package/dist/companion-bootstrap.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"companion-bootstrap.js","sourceRoot":"","sources":["../src/companion-bootstrap.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAClC,OAAO,IAAI,MAAM,WAAW,CAAC;AAE7B,OAAO,EAAE,oBAAoB,EAAE,MAAM,aAAa,CAAC;AACnD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAC;AAE3C,OAAO,EAAE,6BAA6B,EAAE,MAAM,iCAAiC,CAAC;AAChF,OAAO,EAAE,yBAAyB,EAAE,MAAM,YAAY,CAAC;AACvD,OAAO,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,uBAAuB,CAAC;AAe9D,MAAM,UAAU,4BAA4B,CAAC,UAAmB;IAC9D,MAAM,UAAU,GAAG,UAAU,EAAE,IAAI,EAAE,CAAC;IACtC,IAAI,CAAC,UAAU;QAAE,OAAO,kBAAkB,CAAC;IAC3C,OAAO,KAAK,UAAU,+BAA+B,UAAU,UAAU,CAAC;AAC5E,CAAC;AAED,KAAK,UAAU,UAAU,CAAC,CAAS;IACjC,IAAI,CAAC;QACH,MAAM,EAAE,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;QACnB,OAAO,IAAI,CAAC;IACd,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,KAAK,CAAC;IACf,CAAC;AACH,CAAC;AAED,SAAS,wBAAwB,CAAC,KAA2B,EAAE,UAAkB;IAC/E,MAAM,QAAQ,GAAG,yBAAyB,CAAC,KAAK,CAAC,UAAU,CAAC,CAAC;IAC7D,MAAM,SAAS,GAAG,yBAAyB,CAAC,UAAU,CAAC,CAAC;IACxD,IAAI,QAAQ,KAAK,SAAS,EAAE,CAAC;QAC3B,MAAM,IAAI,KAAK,CACb,mBAAmB,KAAK,CAAC,cAAc,2BAA2B,KAAK,CAAC,UAAU,SAAS,UAAU,EAAE,CACxG,CAAC;IACJ,CAAC;AACH,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,wBAAwB,CAC5C,QAAgB,EAChB,UAAkB,EAClB,OAAwC,EAAE;IAE1C,MAAM,GAAG,GAAG,MAAM,oBAAoB,CAAC,QAAQ,CAAC,CAAC;IACjD,MAAM,oBAAoB,GAAG,yBAAyB,CAAC,UAAU,CAAC,UAAU,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC,CAAC;IACzF,MAAM,sBAAsB,GAAG,IAAI,CAAC,cAAc,EAAE,IAAI,EAAE,CAAC;IAC3D,MAAM,cAAc,GAClB,sBAAsB,IAAI,sBAAsB,CAAC,MAAM,GAAG,CAAC;QACzD,CAAC,CAAC,yBAAyB,CAAC,sBAAsB,CAAC,UAAU,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC;QACzE,CAAC,CAAC,6BAA6B,CAC3B,QAAQ,EACR,oBAAoB,EACpB,GAAG,EACH,IAAI,CAAC,OAAO,IAAI,SAAS,CAC1B,CAAC,cAAc,CAAC;IACvB,MAAM,KAAK,GAAG,IAAI,CAAC,OAAO,CAAC,QAAQ,EAAE,cAAc,CAAC,CAAC;IAErD,IAAI,eAAe,GAAG,KAAK,CAAC;IAC5B,IAAI,CAAC,CAAC,MAAM,UAAU,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC;QAC/B,MAAM,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;QACzD,MAAM,EAAE,CAAC,SAAS,CAChB,KAAK,EACL,IAAI,CAAC,eAAe,IAAI,4BAA4B,CAAC,oBAAoB,CAAC,EAC1E,MAAM,CACP,CAAC;QACF,eAAe,GAAG,IAAI,CAAC;IACzB,CAAC;IAED,IAAI,KAAK,GAAG,CAAC,MAAM,SAAS,CAAC,QAAQ,CAAC,CAAC,IAAI,UAAU,EAAE,CAAC;IACxD,MAAM,QAAQ,GAAG,KAAK,CAAC,gBAAgB,CAAC,cAAc,CAAC,CAAC;IACxD,IAAI,iBAAiB,GAAG,KAAK,CAAC;IAC9B,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,KAAK,GAAG;YACN,GAAG,KAAK;YACR,gBAAgB,EAAE;gBAChB,GAAG,KAAK,CAAC,gBAAgB;gBACzB,CAAC,cAAc,CAAC,EAAE;oBAChB,UAAU,EAAE,oBAAoB;oBAChC,cAAc;oBACd,MAAM,EAAE,EAAE;iBACX;aACF;SACF,CAAC;QACF,MAAM,UAAU,CAAC,QAAQ,EAAE,KAAK,CAAC,CAAC;QAClC,iBAAiB,GAAG,IAAI,CAAC;IAC3B,CAAC;SAAM,CAAC;QACN,wBAAwB,CAAC,QAAQ,EAAE,oBAAoB,CAAC,CAAC;IAC3D,CAAC;IAED,OAAO;QACL,UAAU,EAAE,oBAAoB;QAChC,cAAc;QACd,eAAe;QACf,iBAAiB;KAClB,CAAC;AACJ,CAAC"}

package/dist/index.d.ts

@@ -1,7 +1,7 @@
 export type { CommentrayBlock, CommentrayIndex, SourceFileIndexEntry } from "./model.js";
 export { coerceIndexSchemaVersion, CURRENT_SCHEMA_VERSION } from "./model.js";
 export type { AddBlockToIndexInput, BlockRange, CreateBlockForRangeInput, CreatedBlock, WrapSourceLineRangeWithCommentrayMarkersInput, WrapSourceLineRangeWithCommentrayMarkersResult, } from "./blocks.js";
-export { addBlockToIndex, appendBlockToCommentray, createBlockForRange, generateBlockId, wrapSourceLineRangeWithCommentrayMarkers, } from "./blocks.js";
+export { addBlockToIndex, appendBlockToCommentray, createBlockForRange, generateBlockId, insertBlockBySourceMarkerOrder, wrapSourceLineRangeWithCommentrayMarkers, } from "./blocks.js";
 export { assertValidAngleId } from "./angles.js";
 export { applyAnglesFlatMigrationToCommentrayToml, ensureAnglesSentinelFile, upsertAngleDefinitionInCommentrayToml, } from "./angles-toml.js";
 export type { ApplyAnglesFlatMigrationTomlInput, UpsertAngleDefinitionInput, } from "./angles-toml.js";
@@ -36,6 +36,11 @@ export type { BlockDiagnostic } from "./staleness.js";
 export { diagnoseBlock } from "./staleness.js";
 export type { ValidationIssue, ValidationResult, ValidateProjectOptions, } from "./validate-project.js";
 export { readIndex, refreshIndexMigrationsOnDisk, validateProject, writeIndex, } from "./validate-project.js";
+export { DEFAULT_COMMENTRAY_TOML, initializeCommentrayProject, isCommentrayProjectInitialized, pathExists, } from "./init-project.js";
+export type { InitializeCommentrayProjectOptions, InitializeCommentrayProjectResult, } from "./init-project.js";
+export { ensureCompanionForSource } from "./companion-bootstrap.js";
+export type { EnsureCompanionForSourceOptions, EnsureCompanionForSourceResult, } from "./companion-bootstrap.js";
+export { companionPlaceholderMarkdown } from "./companion-bootstrap.js";
 export { plannedSymbolResolutionStrategy } from "./language-intelligence.js";
 export type { SymbolResolutionStrategy } from "./language-intelligence.js";
 export type { HeightAdjustable, Identifiable, SyncRegionContinuationKind, WithHeight, } from "./height-adjustable.js";
@@ -55,5 +60,5 @@ export type { CommentrayMarkerPair } from "./region-marker-convert.js";
 export { convertCommentraySourceMarkersToLanguage, findCommentrayMarkerPairs, leadingIndentOfLine, } from "./region-marker-convert.js";
 export { MARKER_ID_BODY, assertValidMarkerId, normaliseMarkerSlugOrThrow } from "./marker-ids.js";
 export type { MarkerValidationIssue } from "./marker-validation.js";
-export { extractCommentrayBlockIdsFromMarkdown, validateIndexMarkerSemantics, validateMarkerBoundariesInSource, validateMarkerRegionsAgainstIndexedSources, validateOverlappingMarkerInnerRangesInSource, } from "./marker-validation.js";
+export { extractCommentrayBlockIdsInMarkdownOrder, extractCommentrayBlockIdsFromMarkdown, validateIndexMarkerSemantics, validateMarkerBoundariesInSource, validateMarkerRegionsAgainstIndexedSources, validateOverlappingMarkerInnerRangesInSource, } from "./marker-validation.js";
 //# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

@@ -1 +1 @@
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package/dist/index.js

@@ -1,5 +1,5 @@
 export { coerceIndexSchemaVersion, CURRENT_SCHEMA_VERSION } from "./model.js";
-export { addBlockToIndex, appendBlockToCommentray, createBlockForRange, generateBlockId, wrapSourceLineRangeWithCommentrayMarkers, } from "./blocks.js";
+export { addBlockToIndex, appendBlockToCommentray, createBlockForRange, generateBlockId, insertBlockBySourceMarkerOrder, wrapSourceLineRangeWithCommentrayMarkers, } from "./blocks.js";
 export { assertValidAngleId } from "./angles.js";
 export { applyAnglesFlatMigrationToCommentrayToml, ensureAnglesSentinelFile, upsertAngleDefinitionInCommentrayToml, } from "./angles-toml.js";
 export { defaultAngleIdForOpen, FALLBACK_DEFAULT_ANGLE_ID, resolveCommentrayMarkdownPath, } from "./commentray-path-resolution.js";
@@ -21,6 +21,9 @@ export { GitScmProvider, parseGitRenameLines } from "./scm/git-scm-provider.js";
 export { applyPathRenamesToCommentrayIndex, inferAngleIdFromCommentrayPath, } from "./commentray-index-renames.js";
 export { diagnoseBlock } from "./staleness.js";
 export { readIndex, refreshIndexMigrationsOnDisk, validateProject, writeIndex, } from "./validate-project.js";
+export { DEFAULT_COMMENTRAY_TOML, initializeCommentrayProject, isCommentrayProjectInitialized, pathExists, } from "./init-project.js";
+export { ensureCompanionForSource } from "./companion-bootstrap.js";
+export { companionPlaceholderMarkdown } from "./companion-bootstrap.js";
 export { plannedSymbolResolutionStrategy } from "./language-intelligence.js";
 export { BufferingFlowSynchronizer, NON_SYNC_TAIL_SLACK_ITEM_ID, } from "./buffering-flow-synchronizer.js";
 export { APPROVAL_GRID_STANDARD, APPROVAL_HUMAN_BREAK_ROW, approvalHumanBreakFullRow, inferApprovalGridFormatFromAscii, printApprovalFlowSection, printApprovalSynchronizedFlow, } from "./buffering-flow-synchronizer-approval-printer.js";
@@ -32,5 +35,5 @@ export { commentrayRegionInsertions, lineCommentLeaderForLanguage, markerViewpor
 export { CallbackRegionMarkerNamingStrategy, CodeStructureHintStrategy, CompositeRegionMarkerNamingStrategy, defaultRegionMarkerNamingStrategy, EnclosingSymbolHintStrategy, MarkdownHeadingHintStrategy, TomlTableHeaderHintStrategy, tryCodeStructureNameHint, tryMarkdownHeadingTitleAbove, tryNormaliseContextLabelToMarkerId, tryTomlTablePathAboveSelection, } from "./region-marker-naming.js";
 export { convertCommentraySourceMarkersToLanguage, findCommentrayMarkerPairs, leadingIndentOfLine, } from "./region-marker-convert.js";
 export { MARKER_ID_BODY, assertValidMarkerId, normaliseMarkerSlugOrThrow } from "./marker-ids.js";
-export { extractCommentrayBlockIdsFromMarkdown, validateIndexMarkerSemantics, validateMarkerBoundariesInSource, validateMarkerRegionsAgainstIndexedSources, validateOverlappingMarkerInnerRangesInSource, } from "./marker-validation.js";
+export { extractCommentrayBlockIdsInMarkdownOrder, extractCommentrayBlockIdsFromMarkdown, validateIndexMarkerSemantics, validateMarkerBoundariesInSource, validateMarkerRegionsAgainstIndexedSources, validateOverlappingMarkerInnerRangesInSource, } from "./marker-validation.js";
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
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package/dist/init-project.d.ts

@@ -0,0 +1,17 @@
+import { type ValidationIssue } from "./validate-project.js";
+export declare const DEFAULT_COMMENTRAY_TOML: string;
+export type InitializeCommentrayProjectOptions = {
+    ensureSiteGitignore?: boolean;
+    runValidation?: boolean;
+};
+export type InitializeCommentrayProjectResult = {
+    createdIndex: boolean;
+    migratedIndex: boolean;
+    createdToml: boolean;
+    addedSiteGitignore: boolean;
+    validationIssues: ValidationIssue[];
+};
+export declare function pathExists(p: string): Promise<boolean>;
+export declare function initializeCommentrayProject(repoRoot: string, opts?: InitializeCommentrayProjectOptions): Promise<InitializeCommentrayProjectResult>;
+export declare function isCommentrayProjectInitialized(repoRoot: string): Promise<boolean>;
+//# sourceMappingURL=init-project.d.ts.map

package/dist/init-project.d.ts.map

@@ -0,0 +1 @@
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package/dist/init-project.js

@@ -0,0 +1,131 @@
+import fs from "node:fs/promises";
+import path from "node:path";
+import { loadCommentrayConfig } from "./config.js";
+import { emptyIndex } from "./metadata.js";
+import { commentrayAnglesSentinelPath, defaultMetadataIndexPath } from "./paths.js";
+import { refreshIndexMigrationsOnDisk, validateProject, writeIndex, } from "./validate-project.js";
+export const DEFAULT_COMMENTRAY_TOML = [
+    "# Commentray configuration (defaults are commented)",
+    "",
+    "[storage]",
+    "# Repo-relative. Must not live inside .git/ (Git treats that directory as",
+    "# opaque metadata and routine operations can wipe it).",
+    '# dir = ".commentray"',
+    "",
+    "[scm]",
+    '# provider = "git"',
+    "",
+    "[render]",
+    "# mermaid = true",
+    '# syntaxTheme = "github-dark"',
+    "# When true, GitHub blob/tree links for static_site.github_url rewrite to paths",
+    "# relative to generated HTML (Pages, `commentray render`). Needs a repo home URL.",
+    "# relative_github_blob_links = false",
+    "# Local images: `/repo/path` = repo root; `./x` or `sub/x` = next to the commentray `.md`",
+    "# (see docs/spec/storage.md — Images; vocabulary — Commentray vs commentray).",
+    "",
+    "[anchors]",
+    "# defaultStrategy = [",
+    '#   "symbol",',
+    '#   "lines",',
+    "# ]",
+    "",
+    "# Named **Angles** — multiple commentrays per source (Introduction, Architecture, …).",
+    "# Optional UI list + default selection. On disk, multi-angle layout is enabled only when",
+    "# `{storage.dir}/source/.default` exists (file or dir); see docs/spec/storage.md.",
+    "# [angles]",
+    '# default_angle = "introduction"',
+    "# [[angles.definitions]]",
+    '# id = "introduction"',
+    '# title = "Introduction"',
+    "# [[angles.definitions]]",
+    '# id = "architecture"',
+    '# title = "Architecture"',
+    "",
+    "# GitHub Pages static browser (optional). `related_github_files` adds toolbar links",
+    "# to other repo paths on github.com (single index.html cannot serve every file).",
+    "# [static_site]",
+    '# title = "My project"',
+    '# github_url = "https://github.com/you/repo"',
+    '# github_blob_branch = "main"',
+    '# source_file = "README.md"',
+    '# commentray_markdown = ".commentray/source/README.md/main.md"',
+    "# [[static_site.related_github_files]]",
+    '# path = "CONTRIBUTING.md"',
+    "",
+].join("\n");
+export async function pathExists(p) {
+    try {
+        await fs.access(p);
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
+async function ensureSiteIgnoredInGitignore(repoRoot) {
+    const gitignorePath = path.join(repoRoot, ".gitignore");
+    let raw = "";
+    try {
+        raw = await fs.readFile(gitignorePath, "utf8");
+    }
+    catch (e) {
+        const code = e && typeof e === "object" && "code" in e ? e.code : undefined;
+        if (code !== "ENOENT")
+            throw e;
+    }
+    const normalized = raw.replaceAll("\r\n", "\n");
+    const lines = normalized.split("\n").map((line) => line.trim());
+    if (lines.includes("_site") || lines.includes("_site/"))
+        return false;
+    const needsLeadingBreak = normalized.length > 0 && !normalized.endsWith("\n");
+    const next = `${normalized}${needsLeadingBreak ? "\n" : ""}_site\n`;
+    await fs.writeFile(gitignorePath, next, "utf8");
+    return true;
+}
+export async function initializeCommentrayProject(repoRoot, opts = {}) {
+    const cfg = await loadCommentrayConfig(repoRoot);
+    const storage = path.join(repoRoot, cfg.storageDir);
+    await fs.mkdir(path.join(storage, "source"), { recursive: true });
+    await fs.mkdir(path.join(storage, "metadata"), { recursive: true });
+    const anglesSentinel = path.join(repoRoot, commentrayAnglesSentinelPath(cfg.storageDir));
+    if (!(await pathExists(anglesSentinel))) {
+        await fs.writeFile(anglesSentinel, "", "utf8");
+    }
+    const indexPath = path.join(repoRoot, defaultMetadataIndexPath());
+    const createdIndex = !(await pathExists(indexPath));
+    if (createdIndex) {
+        await writeIndex(repoRoot, emptyIndex());
+    }
+    const migration = await refreshIndexMigrationsOnDisk(repoRoot);
+    const tomlPath = path.join(repoRoot, ".commentray.toml");
+    let createdToml = false;
+    try {
+        await fs.stat(tomlPath);
+    }
+    catch {
+        await fs.writeFile(tomlPath, DEFAULT_COMMENTRAY_TOML, "utf8");
+        createdToml = true;
+    }
+    const addedSiteGitignore = opts.ensureSiteGitignore === false ? false : await ensureSiteIgnoredInGitignore(repoRoot);
+    const validationIssues = opts.runValidation === false ? [] : (await validateProject(repoRoot)).issues;
+    return {
+        createdIndex,
+        migratedIndex: migration.changed,
+        createdToml,
+        addedSiteGitignore,
+        validationIssues,
+    };
+}
+export async function isCommentrayProjectInitialized(repoRoot) {
+    const tomlPath = path.join(repoRoot, ".commentray.toml");
+    if (!(await pathExists(tomlPath)))
+        return false;
+    const cfg = await loadCommentrayConfig(repoRoot);
+    const storageAbs = path.resolve(repoRoot, cfg.storageDir);
+    const sourceAbs = path.join(storageAbs, "source");
+    const metadataAbs = path.join(storageAbs, "metadata");
+    const indexAbs = path.join(repoRoot, defaultMetadataIndexPath());
+    return ((await pathExists(sourceAbs)) && (await pathExists(metadataAbs)) && (await pathExists(indexAbs)));
+}
+//# sourceMappingURL=init-project.js.map

package/dist/init-project.js.map

@@ -0,0 +1 @@
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package/dist/marker-validation.d.ts

@@ -7,6 +7,10 @@ export type MarkerValidationIssue = {
  * Block ids declared in companion markdown via `<!-- commentray:block id=… -->` (valid ids only).
  */
 export declare function extractCommentrayBlockIdsFromMarkdown(markdown: string): Set<string>;
+/**
+ * Block ids declared in companion markdown, preserving appearance order.
+ */
+export declare function extractCommentrayBlockIdsInMarkdownOrder(markdown: string): string[];
 /**
  * Detects two or more well-formed marker regions whose **inner** 1-based inclusive line ranges
  * intersect. Adjacent regions (last inner line N, next inner starts N+1) do not overlap.
@@ -29,7 +33,7 @@ export declare function validateMarkerBoundariesInSource(sourceText: string, sou
  * indexed companion markdown for that primary. When it is omitted (tests), the legacy rule
  * applies: warn only when no indexed block claims `marker:<id>`.
  */
-export declare function validateMarkerRegionsAgainstIndexedSources(index: CommentrayIndex, indexedSourceTexts: Map<string, string>, markdownBlockIdsBySourceNorm?: Map<string, Set<string>>): MarkerValidationIssue[];
+export declare function validateMarkerRegionsAgainstIndexedSources(index: CommentrayIndex, indexedSourceTexts: Map<string, string>, markdownBlockIdsBySourceNorm?: Map<string, Set<string>>, markdownBlockOrderByCommentrayPath?: Map<string, string[]>): MarkerValidationIssue[];
 /**
  * Index-level rules for stable cross-references:
  * - **Error** if the same `(sourcePath, marker id)` is claimed by **different** block `id`s

package/dist/marker-validation.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"marker-validation.d.ts","sourceRoot":"","sources":["../src/marker-validation.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,YAAY,CAAC;AAKlD,MAAM,MAAM,qBAAqB,GAAG;IAAE,KAAK,EAAE,OAAO,GAAG,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAA;CAAE,CAAC;AAEjF;;GAEG;AACH,wBAAgB,qCAAqC,CAAC,QAAQ,EAAE,MAAM,GAAG,GAAG,CAAC,MAAM,CAAC,CAanF;AAED;;;GAGG;AACH,wBAAgB,4CAA4C,CAC1D,UAAU,EAAE,MAAM,EAClB,UAAU,EAAE,MAAM,GACjB,qBAAqB,EAAE,CA4BzB;AAED;;;;;;GAMG;AACH,wBAAgB,gCAAgC,CAC9C,UAAU,EAAE,MAAM,EAClB,UAAU,EAAE,MAAM,GACjB,qBAAqB,EAAE,CAmDzB;AAgHD;;;;;;;;GAQG;AACH,wBAAgB,0CAA0C,CACxD,KAAK,EAAE,eAAe,EACtB,kBAAkB,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,EACvC,4BAA4B,CAAC,EAAE,GAAG,CAAC,MAAM,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC,GACtD,qBAAqB,EAAE,CAMzB;AAmBD;;;;;;GAMG;AACH,wBAAgB,4BAA4B,CAAC,KAAK,EAAE,eAAe,GAAG,qBAAqB,EAAE,CAuD5F"}
+{"version":3,"file":"marker-validation.d.ts","sourceRoot":"","sources":["../src/marker-validation.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,YAAY,CAAC;AAKlD,MAAM,MAAM,qBAAqB,GAAG;IAAE,KAAK,EAAE,OAAO,GAAG,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAA;CAAE,CAAC;AAEjF;;GAEG;AACH,wBAAgB,qCAAqC,CAAC,QAAQ,EAAE,MAAM,GAAG,GAAG,CAAC,MAAM,CAAC,CAanF;AAED;;GAEG;AACH,wBAAgB,wCAAwC,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,EAAE,CAanF;AAED;;;GAGG;AACH,wBAAgB,4CAA4C,CAC1D,UAAU,EAAE,MAAM,EAClB,UAAU,EAAE,MAAM,GACjB,qBAAqB,EAAE,CA4BzB;AAED;;;;;;GAMG;AACH,wBAAgB,gCAAgC,CAC9C,UAAU,EAAE,MAAM,EAClB,UAAU,EAAE,MAAM,GACjB,qBAAqB,EAAE,CAmDzB;AAgHD;;;;;;;;GAQG;AACH,wBAAgB,0CAA0C,CACxD,KAAK,EAAE,eAAe,EACtB,kBAAkB,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,EACvC,4BAA4B,CAAC,EAAE,GAAG,CAAC,MAAM,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC,EACvD,kCAAkC,CAAC,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,GACzD,qBAAqB,EAAE,CAWzB;AA4ED;;;;;;GAMG;AACH,wBAAgB,4BAA4B,CAAC,KAAK,EAAE,eAAe,GAAG,qBAAqB,EAAE,CAuD5F"}

package/dist/marker-validation.js

@@ -22,6 +22,25 @@ export function extractCommentrayBlockIdsFromMarkdown(markdown) {
     }
     return out;
 }
+/**
+ * Block ids declared in companion markdown, preserving appearance order.
+ */
+export function extractCommentrayBlockIdsInMarkdownOrder(markdown) {
+    const out = [];
+    const re = new RegExp(`<!--\\s*commentray:block\\s+id=(${MARKER_ID_BODY})\\s*-->`, "gi");
+    for (const m of markdown.matchAll(re)) {
+        const raw = m[1];
+        if (raw === undefined)
+            continue;
+        try {
+            out.push(assertValidMarkerId(raw));
+        }
+        catch {
+            /* ignore malformed ids on that line */
+        }
+    }
+    return out;
+}
 /**
  * Detects two or more well-formed marker regions whose **inner** 1-based inclusive line ranges
  * intersect. Adjacent regions (last inner line N, next inner starts N+1) do not overlap.
@@ -221,13 +240,68 @@ function orphanRegionIssues(index, indexedSourceTexts, claimedBySourceNorm, mark
  * indexed companion markdown for that primary. When it is omitted (tests), the legacy rule
  * applies: warn only when no indexed block claims `marker:<id>`.
  */
-export function validateMarkerRegionsAgainstIndexedSources(index, indexedSourceTexts, markdownBlockIdsBySourceNorm) {
+export function validateMarkerRegionsAgainstIndexedSources(index, indexedSourceTexts, markdownBlockIdsBySourceNorm, markdownBlockOrderByCommentrayPath) {
     const claimed = claimedMarkerIdsByNormalizedSource(index);
     return [
         ...unresolvedMarkerAnchorIssues(index, indexedSourceTexts),
         ...orphanRegionIssues(index, indexedSourceTexts, claimed, markdownBlockIdsBySourceNorm),
+        ...unsortedCompanionBlockOrderIssues(index, indexedSourceTexts, markdownBlockOrderByCommentrayPath),
     ];
 }
+function unsortedCompanionBlockOrderIssues(index, indexedSourceTexts, markdownBlockOrderByCommentrayPath) {
+    if (markdownBlockOrderByCommentrayPath === undefined)
+        return [];
+    const issues = [];
+    for (const [commentrayPath, entry] of Object.entries(index.byCommentrayPath)) {
+        const mdOrder = markdownBlockOrderByCommentrayPath.get(commentrayPath);
+        if (mdOrder === undefined || mdOrder.length < 2)
+            continue;
+        const sourceNorm = normalizeRepoRelativePath(entry.sourcePath);
+        const sourceText = indexedSourceTexts.get(sourceNorm);
+        if (sourceText === undefined)
+            continue;
+        const sourceOrder = markerStartOrderMap(sourceText);
+        let lastRank = -1;
+        let lastId = null;
+        for (const id of mdOrder) {
+            const rank = sourceOrder.get(id);
+            if (rank === undefined)
+                continue;
+            if (rank < lastRank) {
+                issues.push({
+                    level: "warn",
+                    message: `Companion "${commentrayPath}" lists block id "${id}" before "${lastId ?? "(unknown)"}", ` +
+                        `but source "${entry.sourcePath}" orders their regions the other way around. ` +
+                        `Reorder companion sections to match source region order, or re-create misplaced blocks via ` +
+                        `“Commentray: Start new block from selection” to auto-place them by source flow.`,
+                });
+                break;
+            }
+            lastRank = rank;
+            lastId = id;
+        }
+    }
+    return issues;
+}
+function markerStartOrderMap(sourceText) {
+    const order = new Map();
+    let next = 0;
+    const lines = sourceText.replaceAll("\r\n", "\n").split("\n");
+    for (const line of lines) {
+        const hit = parseCommentrayRegionBoundary(line);
+        if (!hit || hit.kind !== "start")
+            continue;
+        if (order.has(hit.id))
+            continue;
+        order.set(hit.id, next++);
+    }
+    for (const pair of findCommentrayMarkerPairs(sourceText)) {
+        if (order.has(pair.id))
+            continue;
+        order.set(pair.id, next++);
+    }
+    return order;
+}
 function markerIdFromBlock(block) {
     try {
         const a = parseAnchor(block.anchor);

package/dist/marker-validation.js.map

@@ -1 +1 @@
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package/dist/validate-project.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"validate-project.d.ts","sourceRoot":"","sources":["../src/validate-project.ts"],"names":[],"mappings":"AAOA,OAAO,EAAoD,KAAK,eAAe,EAAE,MAAM,YAAY,CAAC;AAapG,MAAM,MAAM,eAAe,GAAG;IAAE,KAAK,EAAE,OAAO,GAAG,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAA;CAAE,CAAC;AAE3E,MAAM,MAAM,gBAAgB,GAAG;IAC7B,MAAM,EAAE,eAAe,EAAE,CAAC;CAC3B,CAAC;AAEF,MAAM,MAAM,sBAAsB,GAAG;IACnC;;;;OAIG;IACH,uBAAuB,CAAC,EAAE,SAAS,MAAM,EAAE,CAAC;CAC7C,CAAC;AAwLF,wBAAsB,eAAe,CACnC,QAAQ,EAAE,MAAM,EAChB,OAAO,CAAC,EAAE,sBAAsB,GAC/B,OAAO,CAAC,gBAAgB,CAAC,CAuD3B;AAiBD;;;GAGG;AACH,wBAAsB,4BAA4B,CAChD,QAAQ,EAAE,MAAM,GACf,OAAO,CAAC;IAAE,KAAK,EAAE,eAAe,CAAC;IAAC,OAAO,EAAE,OAAO,CAAA;CAAE,CAAC,CAqBvD;AAED,wBAAsB,SAAS,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,eAAe,GAAG,IAAI,CAAC,CASjF;AAED;;;;GAIG;AACH,wBAAsB,UAAU,CAAC,QAAQ,EAAE,MAAM,EAAE,KAAK,EAAE,eAAe,GAAG,OAAO,CAAC,IAAI,CAAC,CAKxF"}
+{"version":3,"file":"validate-project.d.ts","sourceRoot":"","sources":["../src/validate-project.ts"],"names":[],"mappings":"AAOA,OAAO,EAAoD,KAAK,eAAe,EAAE,MAAM,YAAY,CAAC;AAcpG,MAAM,MAAM,eAAe,GAAG;IAAE,KAAK,EAAE,OAAO,GAAG,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAA;CAAE,CAAC;AAE3E,MAAM,MAAM,gBAAgB,GAAG;IAC7B,MAAM,EAAE,eAAe,EAAE,CAAC;CAC3B,CAAC;AAEF,MAAM,MAAM,sBAAsB,GAAG;IACnC;;;;OAIG;IACH,uBAAuB,CAAC,EAAE,SAAS,MAAM,EAAE,CAAC;CAC7C,CAAC;AA8LF,wBAAsB,eAAe,CACnC,QAAQ,EAAE,MAAM,EAChB,OAAO,CAAC,EAAE,sBAAsB,GAC/B,OAAO,CAAC,gBAAgB,CAAC,CAuD3B;AAiBD;;;GAGG;AACH,wBAAsB,4BAA4B,CAChD,QAAQ,EAAE,MAAM,GACf,OAAO,CAAC;IAAE,KAAK,EAAE,eAAe,CAAC;IAAC,OAAO,EAAE,OAAO,CAAA;CAAE,CAAC,CAqBvD;AAED,wBAAsB,SAAS,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,eAAe,GAAG,IAAI,CAAC,CASjF;AAED;;;;GAIG;AACH,wBAAsB,UAAU,CAAC,QAAQ,EAAE,MAAM,EAAE,KAAK,EAAE,eAAe,GAAG,OAAO,CAAC,IAAI,CAAC,CAKxF"}

package/dist/validate-project.js

@@ -7,7 +7,7 @@ import { assertValidIndex } from "./metadata.js";
 import { migrateIndex } from "./migrate.js";
 import { coerceIndexSchemaVersion, CURRENT_SCHEMA_VERSION } from "./model.js";
 import { defaultMetadataIndexPath, normalizeRepoRelativePath } from "./paths.js";
-import { extractCommentrayBlockIdsFromMarkdown, validateIndexMarkerSemantics, validateMarkerBoundariesInSource, validateMarkerRegionsAgainstIndexedSources, } from "./marker-validation.js";
+import { extractCommentrayBlockIdsInMarkdownOrder, extractCommentrayBlockIdsFromMarkdown, validateIndexMarkerSemantics, validateMarkerBoundariesInSource, validateMarkerRegionsAgainstIndexedSources, } from "./marker-validation.js";
 import { loadGitTrackedSourceTextsOutsideIndex } from "./git-relocation-scan.js";
 import { relocationHintMessages } from "./relocation-hints.js";
 import { collectOrphanCompanionMarkdownTargets } from "./orphan-companion-markdown.js";
@@ -22,6 +22,7 @@ function stagedScopeNeedsFullIndexValidation(staged) {
 }
 async function loadMarkdownBlockIdsByIndexedSource(repoRoot, index) {
     const bySource = new Map();
+    const orderByCommentrayPath = new Map();
     for (const [crPath, entry] of Object.entries(index.byCommentrayPath)) {
         const norm = normalizeRepoRelativePath(entry.sourcePath);
         let set = bySource.get(norm);
@@ -32,6 +33,7 @@ async function loadMarkdownBlockIdsByIndexedSource(repoRoot, index) {
         const abs = path.join(repoRoot, crPath);
         try {
             const md = await fs.readFile(abs, "utf8");
+            orderByCommentrayPath.set(crPath, extractCommentrayBlockIdsInMarkdownOrder(md));
             for (const id of extractCommentrayBlockIdsFromMarkdown(md)) {
                 set.add(id);
             }
@@ -40,7 +42,7 @@ async function loadMarkdownBlockIdsByIndexedSource(repoRoot, index) {
             /* missing or unreadable companion — other validation may warn */
         }
     }
-    return bySource;
+    return { idsBySourceNorm: bySource, orderByCommentrayPath };
 }
 function indexFilteredForStaged(index, staged) {
     const next = {};
@@ -88,8 +90,8 @@ async function collectIssuesForLoadedIndex(repoRoot, index) {
             issues.push({ level: issue.level, message: issue.message });
         }
     }
-    const markdownBlockIdsBySourceNorm = await loadMarkdownBlockIdsByIndexedSource(repoRoot, index);
-    for (const issue of validateMarkerRegionsAgainstIndexedSources(index, indexedSourceTexts, markdownBlockIdsBySourceNorm)) {
+    const markdownIndexSignals = await loadMarkdownBlockIdsByIndexedSource(repoRoot, index);
+    for (const issue of validateMarkerRegionsAgainstIndexedSources(index, indexedSourceTexts, markdownIndexSignals.idsBySourceNorm, markdownIndexSignals.orderByCommentrayPath)) {
         issues.push({ level: issue.level, message: issue.message });
     }
     if (missingSourcesNorm.size === 0)

package/dist/validate-project.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@commentray/core",
-  "version": "0.3.5",
+  "version": "0.3.6",
   "publishConfig": {
     "access": "public"
   },