@colbymchenry/codegraph 0.7.10 → 0.9.0

package/dist/db/queries.js.map

@@ -1 +0,0 @@
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package/dist/db/schema.sql

@@ -1,151 +0,0 @@
--- CodeGraph SQLite Schema
--- Version 1
-
--- Schema version tracking
-CREATE TABLE IF NOT EXISTS schema_versions (
-    version INTEGER PRIMARY KEY,
-    applied_at INTEGER NOT NULL,
-    description TEXT
-);
-
--- Insert initial version
-INSERT INTO schema_versions (version, applied_at, description)
-VALUES (1, strftime('%s', 'now') * 1000, 'Initial schema');
-
--- =============================================================================
--- Core Tables
--- =============================================================================
-
--- Nodes: Code symbols (functions, classes, variables, etc.)
-CREATE TABLE IF NOT EXISTS nodes (
-    id TEXT PRIMARY KEY,
-    kind TEXT NOT NULL,
-    name TEXT NOT NULL,
-    qualified_name TEXT NOT NULL,
-    file_path TEXT NOT NULL,
-    language TEXT NOT NULL,
-    start_line INTEGER NOT NULL,
-    end_line INTEGER NOT NULL,
-    start_column INTEGER NOT NULL,
-    end_column INTEGER NOT NULL,
-    docstring TEXT,
-    signature TEXT,
-    visibility TEXT,
-    is_exported INTEGER DEFAULT 0,
-    is_async INTEGER DEFAULT 0,
-    is_static INTEGER DEFAULT 0,
-    is_abstract INTEGER DEFAULT 0,
-    decorators TEXT, -- JSON array
-    type_parameters TEXT, -- JSON array
-    updated_at INTEGER NOT NULL
-);
-
--- Edges: Relationships between nodes
-CREATE TABLE IF NOT EXISTS edges (
-    id INTEGER PRIMARY KEY AUTOINCREMENT,
-    source TEXT NOT NULL,
-    target TEXT NOT NULL,
-    kind TEXT NOT NULL,
-    metadata TEXT, -- JSON object
-    line INTEGER,
-    col INTEGER,
-    provenance TEXT DEFAULT NULL,
-    FOREIGN KEY (source) REFERENCES nodes(id) ON DELETE CASCADE,
-    FOREIGN KEY (target) REFERENCES nodes(id) ON DELETE CASCADE
-);
-
--- Files: Tracked source files
-CREATE TABLE IF NOT EXISTS files (
-    path TEXT PRIMARY KEY,
-    content_hash TEXT NOT NULL,
-    language TEXT NOT NULL,
-    size INTEGER NOT NULL,
-    modified_at INTEGER NOT NULL,
-    indexed_at INTEGER NOT NULL,
-    node_count INTEGER DEFAULT 0,
-    errors TEXT -- JSON array
-);
-
--- Unresolved References: References that need resolution after full indexing
-CREATE TABLE IF NOT EXISTS unresolved_refs (
-    id INTEGER PRIMARY KEY AUTOINCREMENT,
-    from_node_id TEXT NOT NULL,
-    reference_name TEXT NOT NULL,
-    reference_kind TEXT NOT NULL,
-    line INTEGER NOT NULL,
-    col INTEGER NOT NULL,
-    candidates TEXT, -- JSON array
-    file_path TEXT NOT NULL DEFAULT '',
-    language TEXT NOT NULL DEFAULT 'unknown',
-    FOREIGN KEY (from_node_id) REFERENCES nodes(id) ON DELETE CASCADE
-);
-
--- =============================================================================
--- Indexes for Query Performance
--- =============================================================================
-
--- Node indexes
-CREATE INDEX IF NOT EXISTS idx_nodes_kind ON nodes(kind);
-CREATE INDEX IF NOT EXISTS idx_nodes_name ON nodes(name);
-CREATE INDEX IF NOT EXISTS idx_nodes_qualified_name ON nodes(qualified_name);
-CREATE INDEX IF NOT EXISTS idx_nodes_file_path ON nodes(file_path);
-CREATE INDEX IF NOT EXISTS idx_nodes_language ON nodes(language);
-CREATE INDEX IF NOT EXISTS idx_nodes_file_line ON nodes(file_path, start_line);
-CREATE INDEX IF NOT EXISTS idx_nodes_lower_name ON nodes(lower(name));
-
--- Full-text search index on node names, docstrings, and signatures
-CREATE VIRTUAL TABLE IF NOT EXISTS nodes_fts USING fts5(
-    id,
-    name,
-    qualified_name,
-    docstring,
-    signature,
-    content='nodes',
-    content_rowid='rowid'
-);
-
--- Triggers to keep FTS index in sync
-CREATE TRIGGER IF NOT EXISTS nodes_ai AFTER INSERT ON nodes BEGIN
-    INSERT INTO nodes_fts(rowid, id, name, qualified_name, docstring, signature)
-    VALUES (NEW.rowid, NEW.id, NEW.name, NEW.qualified_name, NEW.docstring, NEW.signature);
-END;
-
-CREATE TRIGGER IF NOT EXISTS nodes_ad AFTER DELETE ON nodes BEGIN
-    INSERT INTO nodes_fts(nodes_fts, rowid, id, name, qualified_name, docstring, signature)
-    VALUES ('delete', OLD.rowid, OLD.id, OLD.name, OLD.qualified_name, OLD.docstring, OLD.signature);
-END;
-
-CREATE TRIGGER IF NOT EXISTS nodes_au AFTER UPDATE ON nodes BEGIN
-    INSERT INTO nodes_fts(nodes_fts, rowid, id, name, qualified_name, docstring, signature)
-    VALUES ('delete', OLD.rowid, OLD.id, OLD.name, OLD.qualified_name, OLD.docstring, OLD.signature);
-    INSERT INTO nodes_fts(rowid, id, name, qualified_name, docstring, signature)
-    VALUES (NEW.rowid, NEW.id, NEW.name, NEW.qualified_name, NEW.docstring, NEW.signature);
-END;
-
--- Edge indexes.
--- idx_edges_source / idx_edges_target are intentionally omitted —
--- the (source, kind) and (target, kind) composites below cover the
--- corresponding source-only / target-only lookups via SQLite's
--- left-prefix scan, so the narrow indexes are dead weight on writes.
--- Migration v4 drops them on existing databases.
-CREATE INDEX IF NOT EXISTS idx_edges_kind ON edges(kind);
-CREATE INDEX IF NOT EXISTS idx_edges_source_kind ON edges(source, kind);
-CREATE INDEX IF NOT EXISTS idx_edges_target_kind ON edges(target, kind);
-
--- File indexes
-CREATE INDEX IF NOT EXISTS idx_files_language ON files(language);
-CREATE INDEX IF NOT EXISTS idx_files_modified_at ON files(modified_at);
-
--- Unresolved refs indexes
-CREATE INDEX IF NOT EXISTS idx_unresolved_from_node ON unresolved_refs(from_node_id);
-CREATE INDEX IF NOT EXISTS idx_unresolved_name ON unresolved_refs(reference_name);
-CREATE INDEX IF NOT EXISTS idx_unresolved_file_path ON unresolved_refs(file_path);
-CREATE INDEX IF NOT EXISTS idx_unresolved_from_name ON unresolved_refs(from_node_id, reference_name);
-CREATE INDEX IF NOT EXISTS idx_edges_provenance ON edges(provenance);
-
--- Project metadata for version/provenance tracking
-CREATE TABLE IF NOT EXISTS project_metadata (
-    key TEXT PRIMARY KEY,
-    value TEXT NOT NULL,
-    updated_at INTEGER NOT NULL
-);

package/dist/db/sqlite-adapter.d.ts

@@ -1,52 +0,0 @@
-/**
- * SQLite Adapter
- *
- * Provides a unified interface over better-sqlite3 (native) and
- * node-sqlite3-wasm (WASM fallback) for universal cross-platform support.
- */
-export interface SqliteStatement {
-    run(...params: any[]): {
-        changes: number;
-        lastInsertRowid: number | bigint;
-    };
-    get(...params: any[]): any;
-    all(...params: any[]): any[];
-}
-export interface SqliteDatabase {
-    prepare(sql: string): SqliteStatement;
-    exec(sql: string): void;
-    pragma(str: string): any;
-    transaction<T>(fn: (...args: any[]) => T): (...args: any[]) => T;
-    close(): void;
-    readonly open: boolean;
-}
-export type SqliteBackend = 'native' | 'wasm';
-/**
- * One-line summary of the recovery steps shown when WASM fallback is
- * active. Single source of truth so the recipe can't drift between the
- * stderr banner and the MCP status formatter.
- */
-export declare const WASM_FALLBACK_FIX_RECIPE: string;
-/**
- * Multi-line banner shown to stderr when `createDatabase` falls back to
- * WASM. Replaces a one-line `console.warn` that MCP transports (which
- * take stdout for the protocol) typically swallow, leaving users on a
- * 5-10x slower backend with no signal.
- *
- * Exported for unit testing — pinning the recipe content prevents
- * future edits from silently stripping the recovery commands.
- */
-export declare function buildWasmFallbackBanner(nativeError?: string): string;
-/**
- * Create a database connection. Tries native better-sqlite3 first,
- * falls back to node-sqlite3-wasm. Returns the active backend
- * alongside the db so each `DatabaseConnection` can report its own
- * backend per-instance — MCP can open multiple project DBs in one
- * process (`tools.ts` getCodeGraph cache), so a process-global would
- * race / overwrite.
- */
-export declare function createDatabase(dbPath: string): {
-    db: SqliteDatabase;
-    backend: SqliteBackend;
-};
-//# sourceMappingURL=sqlite-adapter.d.ts.map

package/dist/db/sqlite-adapter.d.ts.map

@@ -1 +0,0 @@
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package/dist/db/sqlite-adapter.js

@@ -1,237 +0,0 @@
-"use strict";
-/**
- * SQLite Adapter
- *
- * Provides a unified interface over better-sqlite3 (native) and
- * node-sqlite3-wasm (WASM fallback) for universal cross-platform support.
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.WASM_FALLBACK_FIX_RECIPE = void 0;
-exports.buildWasmFallbackBanner = buildWasmFallbackBanner;
-exports.createDatabase = createDatabase;
-/**
- * One-line summary of the recovery steps shown when WASM fallback is
- * active. Single source of truth so the recipe can't drift between the
- * stderr banner and the MCP status formatter.
- */
-exports.WASM_FALLBACK_FIX_RECIPE = '`xcode-select --install` (macOS) or `apt install build-essential` (Debian/Ubuntu), ' +
-    'then `npm rebuild better-sqlite3`, or `npm install better-sqlite3 --save` to force-include it.';
-/**
- * Multi-line banner shown to stderr when `createDatabase` falls back to
- * WASM. Replaces a one-line `console.warn` that MCP transports (which
- * take stdout for the protocol) typically swallow, leaving users on a
- * 5-10x slower backend with no signal.
- *
- * Exported for unit testing — pinning the recipe content prevents
- * future edits from silently stripping the recovery commands.
- */
-function buildWasmFallbackBanner(nativeError) {
-    const sep = '─'.repeat(72);
-    const lines = [
-        sep,
-        '[CodeGraph] WASM SQLite fallback active (better-sqlite3 unavailable)',
-        sep,
-        'Indexing and sync will be 5-10x slower than the native backend.',
-        '',
-        'Fix on macOS:',
-        '  xcode-select --install        # install C build tools',
-        '  npm rebuild better-sqlite3    # rebuild native binding for current Node',
-        '',
-        'Fix on Linux:',
-        '  sudo apt install build-essential python3 make    # Debian/Ubuntu',
-        '  # or: sudo yum groupinstall "Development Tools"  # RHEL/Fedora',
-        '  npm rebuild better-sqlite3',
-        '',
-        'Or force-include as a hard dependency on any platform:',
-        '  npm install better-sqlite3 --save',
-        '',
-        'Verify after fix: `codegraph status` should show `Backend: native`.',
-    ];
-    if (nativeError) {
-        lines.push('', `Native load error: ${nativeError}`);
-    }
-    lines.push(sep);
-    return lines.join('\n');
-}
-/**
- * Translate @named parameters (better-sqlite3 style) to positional ? params
- * for node-sqlite3-wasm, which only supports positional binding.
- *
- * Returns the rewritten SQL and an ordered list of parameter names.
- * If no named params are found, returns null for paramOrder (positional mode).
- */
-function translateNamedParams(sql) {
-    const paramOrder = [];
-    const rewritten = sql.replace(/@(\w+)/g, (_match, name) => {
-        paramOrder.push(name);
-        return '?';
-    });
-    if (paramOrder.length === 0) {
-        return { sql, paramOrder: null };
-    }
-    return { sql: rewritten, paramOrder };
-}
-/**
- * Convert better-sqlite3-style params to a positional array for node-sqlite3-wasm.
- *
- * Handles three calling conventions:
- * - Named object: run({ id: '1', name: 'a' }) → positional array via paramOrder
- * - Positional args: run('a', 'b') → ['a', 'b']
- * - No args: run() → undefined
- */
-function resolveParams(params, paramOrder) {
-    if (params.length === 0)
-        return undefined;
-    // If paramOrder exists and first arg is a plain object, do named→positional translation
-    if (paramOrder && params.length === 1 && params[0] !== null && typeof params[0] === 'object' && !Array.isArray(params[0]) && !(params[0] instanceof Buffer) && !(params[0] instanceof Uint8Array)) {
-        const obj = params[0];
-        return paramOrder.map(name => obj[name]);
-    }
-    // Positional: single value or already an array
-    if (params.length === 1)
-        return params[0];
-    return params;
-}
-/**
- * Wraps node-sqlite3-wasm to match the better-sqlite3 interface.
- *
- * Key differences handled:
- * - better-sqlite3 uses @named params; node-sqlite3-wasm uses positional ? only
- * - better-sqlite3 uses variadic args: stmt.run(a, b, c)
- * - node-sqlite3-wasm uses a single array/object: stmt.run([a, b, c])
- * - node-sqlite3-wasm has `isOpen` instead of `open`
- * - node-sqlite3-wasm doesn't have a `pragma()` method
- * - node-sqlite3-wasm doesn't have a `transaction()` method
- */
-class WasmDatabaseAdapter {
-    _db;
-    // Track raw WASM statements so we can finalize them on close.
-    // node-sqlite3-wasm won't release its file lock if statements are left open.
-    _openStmts = new Set();
-    constructor(dbPath) {
-        // eslint-disable-next-line @typescript-eslint/no-require-imports
-        const { Database } = require('node-sqlite3-wasm');
-        this._db = new Database(dbPath);
-    }
-    get open() {
-        return this._db.isOpen;
-    }
-    prepare(sql) {
-        const { sql: rewrittenSql, paramOrder } = translateNamedParams(sql);
-        const stmt = this._db.prepare(rewrittenSql);
-        this._openStmts.add(stmt);
-        return {
-            run(...params) {
-                const resolved = resolveParams(params, paramOrder);
-                const result = resolved !== undefined ? stmt.run(resolved) : stmt.run();
-                return {
-                    changes: result?.changes ?? 0,
-                    lastInsertRowid: result?.lastInsertRowid ?? 0,
-                };
-            },
-            get(...params) {
-                const resolved = resolveParams(params, paramOrder);
-                return resolved !== undefined ? stmt.get(resolved) : stmt.get();
-            },
-            all(...params) {
-                const resolved = resolveParams(params, paramOrder);
-                return resolved !== undefined ? stmt.all(resolved) : stmt.all();
-            },
-        };
-    }
-    exec(sql) {
-        this._db.exec(sql);
-    }
-    pragma(str) {
-        const trimmed = str.trim();
-        // Write pragma: "key = value"
-        if (trimmed.includes('=')) {
-            const eqIdx = trimmed.indexOf('=');
-            const key = trimmed.substring(0, eqIdx).trim();
-            const value = trimmed.substring(eqIdx + 1).trim();
-            // WAL is not supported in WASM SQLite — use DELETE journal mode
-            if (key === 'journal_mode' && value.toUpperCase() === 'WAL') {
-                this._db.exec('PRAGMA journal_mode = DELETE');
-                return;
-            }
-            // mmap is not available in WASM — silently skip
-            if (key === 'mmap_size') {
-                return;
-            }
-            // synchronous = NORMAL is unsafe without WAL — use FULL
-            if (key === 'synchronous' && value.toUpperCase() === 'NORMAL') {
-                this._db.exec('PRAGMA synchronous = FULL');
-                return;
-            }
-            this._db.exec(`PRAGMA ${key} = ${value}`);
-            return;
-        }
-        // Read pragma: "key" — return the value
-        const stmt = this._db.prepare(`PRAGMA ${trimmed}`);
-        const result = stmt.get();
-        stmt.finalize();
-        return result;
-    }
-    transaction(fn) {
-        return (...args) => {
-            this._db.exec('BEGIN');
-            try {
-                const result = fn(...args);
-                this._db.exec('COMMIT');
-                return result;
-            }
-            catch (error) {
-                this._db.exec('ROLLBACK');
-                throw error;
-            }
-        };
-    }
-    close() {
-        // Finalize all tracked statements before closing.
-        // node-sqlite3-wasm won't release its directory-based file lock
-        // if any prepared statements remain open.
-        for (const stmt of this._openStmts) {
-            try {
-                stmt.finalize();
-            }
-            catch { /* already finalized */ }
-        }
-        this._openStmts.clear();
-        this._db.close();
-    }
-}
-/**
- * Create a database connection. Tries native better-sqlite3 first,
- * falls back to node-sqlite3-wasm. Returns the active backend
- * alongside the db so each `DatabaseConnection` can report its own
- * backend per-instance — MCP can open multiple project DBs in one
- * process (`tools.ts` getCodeGraph cache), so a process-global would
- * race / overwrite.
- */
-function createDatabase(dbPath) {
-    let nativeError;
-    let wasmError;
-    // Try native better-sqlite3 first
-    try {
-        // eslint-disable-next-line @typescript-eslint/no-require-imports
-        const Database = require('better-sqlite3');
-        const db = new Database(dbPath);
-        return { db: db, backend: 'native' };
-    }
-    catch (error) {
-        nativeError = error instanceof Error ? error.message : String(error);
-    }
-    // Fall back to WASM
-    try {
-        const db = new WasmDatabaseAdapter(dbPath);
-        console.warn(buildWasmFallbackBanner(nativeError));
-        return { db, backend: 'wasm' };
-    }
-    catch (error) {
-        wasmError = error instanceof Error ? error.message : String(error);
-    }
-    throw new Error(`Failed to load any SQLite backend.\n` +
-        `  Native (better-sqlite3): ${nativeError}\n` +
-        `  WASM (node-sqlite3-wasm): ${wasmError}`);
-}
-//# sourceMappingURL=sqlite-adapter.js.map

package/dist/db/sqlite-adapter.js.map

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package/dist/directory.d.ts

@@ -1,57 +0,0 @@
-/**
- * Directory Management
- *
- * Manages the .codegraph/ directory structure for CodeGraph data.
- */
-/**
- * CodeGraph directory name
- */
-export declare const CODEGRAPH_DIR = ".codegraph";
-/**
- * Get the .codegraph directory path for a project
- */
-export declare function getCodeGraphDir(projectRoot: string): string;
-/**
- * Check if a project has been initialized with CodeGraph
- * Requires both .codegraph/ directory AND codegraph.db to exist
- */
-export declare function isInitialized(projectRoot: string): boolean;
-/**
- * Find the nearest parent directory containing .codegraph/
- *
- * Walks up from the given path to find a CodeGraph-initialized project,
- * similar to how git finds .git/ directories.
- *
- * @param startPath - Directory to start searching from
- * @returns The project root containing .codegraph/, or null if not found
- */
-export declare function findNearestCodeGraphRoot(startPath: string): string | null;
-/**
- * Create the .codegraph directory structure
- * Note: Only throws if codegraph.db already exists, not just if .codegraph/ exists.
- */
-export declare function createDirectory(projectRoot: string): void;
-/**
- * Remove the .codegraph directory
- */
-export declare function removeDirectory(projectRoot: string): void;
-/**
- * Get all files in the .codegraph directory
- */
-export declare function listDirectoryContents(projectRoot: string): string[];
-/**
- * Get the total size of the .codegraph directory in bytes
- */
-export declare function getDirectorySize(projectRoot: string): number;
-/**
- * Ensure a subdirectory exists within .codegraph
- */
-export declare function ensureSubdirectory(projectRoot: string, subdirName: string): string;
-/**
- * Check if the .codegraph directory has valid structure
- */
-export declare function validateDirectory(projectRoot: string): {
-    valid: boolean;
-    errors: string[];
-};
-//# sourceMappingURL=directory.d.ts.map

package/dist/directory.d.ts.map

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