@colbymchenry/codegraph 0.6.8 → 0.7.2

package/dist/index.d.ts

@@ -7,7 +7,7 @@
 import { CodeGraphConfig, Node, Edge, FileRecord, ExtractionResult, Subgraph, TraversalOptions, SearchOptions, SearchResult, Context, GraphStats, TaskInput, TaskContext, BuildContextOptions, FindRelevantContextOptions } from './types';
 import { IndexProgress, IndexResult, SyncResult } from './extraction';
 import { ResolutionResult } from './resolution';
-import { EmbeddingProgress } from './vectors';
+import { WatchOptions } from './sync';
 export * from './types';
 export { getDatabasePath } from './db';
 export { getConfigPath } from './config';
@@ -15,9 +15,9 @@ export { getCodeGraphDir, isInitialized, findNearestCodeGraphRoot, CODEGRAPH_DIR
 export { IndexProgress, IndexResult, SyncResult } from './extraction';
 export { detectLanguage, isLanguageSupported, isGrammarLoaded, getSupportedLanguages, initGrammars, loadGrammarsForLanguages, loadAllGrammars } from './extraction';
 export { ResolutionResult } from './resolution';
-export { EmbeddingProgress } from './vectors';
 export { CodeGraphError, FileError, ParseError, DatabaseError, SearchError, VectorError, ConfigError, Logger, setLogger, getLogger, silentLogger, defaultLogger, } from './errors';
 export { Mutex, FileLock, processInBatches, debounce, throttle, MemoryMonitor } from './utils';
+export { FileWatcher, WatchOptions } from './sync';
 export { MCPServer } from './mcp';
 /**
  * Options for initializing a new CodeGraph project
@@ -47,6 +47,8 @@ export interface IndexOptions {
     onProgress?: (progress: IndexProgress) => void;
     /** Abort signal for cancellation */
     signal?: AbortSignal;
+    /** Enable verbose logging (worker lifecycle, memory, timeouts) */
+    verbose?: boolean;
 }
 /**
  * Main CodeGraph class
@@ -62,10 +64,10 @@ export declare class CodeGraph {
     private resolver;
     private graphManager;
     private traverser;
-    private vectorManager;
     private contextBuilder;
     private indexMutex;
     private fileLock;
+    private watcher;
     private constructor();
     /**
      * Initialize a new CodeGraph project
@@ -135,6 +137,24 @@ export declare class CodeGraph {
      * Check if an indexing operation is currently in progress
      */
     isIndexing(): boolean;
+    /**
+     * Start watching for file changes and auto-syncing.
+     *
+     * Uses native OS file events (FSEvents on macOS, inotify on Linux 19+,
+     * ReadDirectoryChangesW on Windows) with debouncing to avoid thrashing.
+     *
+     * @param options - Watch options (debounce delay, callbacks)
+     * @returns true if watching started successfully
+     */
+    watch(options?: WatchOptions): boolean;
+    /**
+     * Stop watching for file changes.
+     */
+    unwatch(): void;
+    /**
+     * Check if the file watcher is active.
+     */
+    isWatching(): boolean;
     /**
      * Get files that have changed since last index
      */
@@ -157,6 +177,11 @@ export declare class CodeGraph {
      * - Name-based symbol matching
      */
     resolveReferences(onProgress?: (current: number, total: number) => void): ResolutionResult;
+    /**
+     * Resolve references in batches to keep memory bounded on large codebases.
+     * Processes chunks of unresolved refs, persisting results after each batch.
+     */
+    resolveReferencesBatched(onProgress?: (current: number, total: number) => void): Promise<ResolutionResult>;
     /**
      * Get detected frameworks in the project
      */
@@ -356,55 +381,6 @@ export declare class CodeGraph {
         childCount: number;
         depth: number;
     };
-    /**
-     * Initialize the embedding system
-     *
-     * This downloads the embedding model on first use and initializes
-     * the vector search system. Must be called before using semantic search.
-     */
-    initializeEmbeddings(): Promise<void>;
-    /**
-     * Check if embeddings are initialized
-     */
-    isEmbeddingsInitialized(): boolean;
-    /**
-     * Generate embeddings for all eligible nodes
-     *
-     * @param onProgress - Optional progress callback
-     * @returns Number of nodes embedded
-     */
-    generateEmbeddings(onProgress?: (progress: EmbeddingProgress) => void): Promise<number>;
-    /**
-     * Semantic search using embeddings
-     *
-     * Searches for code nodes semantically similar to the query.
-     * Requires embeddings to be initialized first.
-     *
-     * @param query - Natural language search query
-     * @param limit - Maximum number of results (default: 10)
-     * @returns Array of search results with similarity scores
-     */
-    semanticSearch(query: string, limit?: number): Promise<SearchResult[]>;
-    /**
-     * Find similar code blocks
-     *
-     * Finds nodes semantically similar to a given node.
-     * Requires embeddings to be initialized first.
-     *
-     * @param nodeId - ID of the node to find similar nodes for
-     * @param limit - Maximum number of results (default: 10)
-     * @returns Array of similar nodes with similarity scores
-     */
-    findSimilar(nodeId: string, limit?: number): Promise<SearchResult[]>;
-    /**
-     * Get vector embedding statistics
-     */
-    getEmbeddingStats(): {
-        totalVectors: number;
-        vssEnabled: boolean;
-        modelId: string;
-        dimension: number;
-    } | null;
     /**
      * Get the source code for a node
      *
@@ -429,7 +405,7 @@ export declare class CodeGraph {
      * Build context for a task
      *
      * Creates comprehensive context by:
-     * 1. Running semantic search to find entry points
+     * 1. Running FTS search to find entry points
      * 2. Expanding the graph around entry points
      * 3. Extracting code blocks for key nodes
      * 4. Formatting output for Claude

package/dist/index.d.ts.map

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package/dist/index.js

@@ -42,7 +42,7 @@ var __exportStar = (this && this.__exportStar) || function(m, exports) {
     for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.CodeGraph = exports.MCPServer = exports.MemoryMonitor = exports.throttle = exports.debounce = exports.processInBatches = exports.FileLock = exports.Mutex = exports.defaultLogger = exports.silentLogger = exports.getLogger = exports.setLogger = exports.ConfigError = exports.VectorError = exports.SearchError = exports.DatabaseError = exports.ParseError = exports.FileError = exports.CodeGraphError = exports.loadAllGrammars = exports.loadGrammarsForLanguages = exports.initGrammars = exports.getSupportedLanguages = exports.isGrammarLoaded = exports.isLanguageSupported = exports.detectLanguage = exports.CODEGRAPH_DIR = exports.findNearestCodeGraphRoot = exports.isInitialized = exports.getCodeGraphDir = exports.getConfigPath = exports.getDatabasePath = void 0;
+exports.CodeGraph = exports.MCPServer = exports.FileWatcher = exports.MemoryMonitor = exports.throttle = exports.debounce = exports.processInBatches = exports.FileLock = exports.Mutex = exports.defaultLogger = exports.silentLogger = exports.getLogger = exports.setLogger = exports.ConfigError = exports.VectorError = exports.SearchError = exports.DatabaseError = exports.ParseError = exports.FileError = exports.CodeGraphError = exports.loadAllGrammars = exports.loadGrammarsForLanguages = exports.initGrammars = exports.getSupportedLanguages = exports.isGrammarLoaded = exports.isLanguageSupported = exports.detectLanguage = exports.CODEGRAPH_DIR = exports.findNearestCodeGraphRoot = exports.isInitialized = exports.getCodeGraphDir = exports.getConfigPath = exports.getDatabasePath = void 0;
 const path = __importStar(require("path"));
 const db_1 = require("./db");
 const queries_1 = require("./db/queries");
@@ -51,9 +51,9 @@ const directory_1 = require("./directory");
 const extraction_1 = require("./extraction");
 const resolution_1 = require("./resolution");
 const graph_1 = require("./graph");
-const vectors_1 = require("./vectors");
 const context_1 = require("./context");
 const utils_1 = require("./utils");
+const sync_1 = require("./sync");
 // Re-export types for consumers
 __exportStar(require("./types"), exports);
 var db_2 = require("./db");
@@ -92,6 +92,8 @@ Object.defineProperty(exports, "processInBatches", { enumerable: true, get: func
 Object.defineProperty(exports, "debounce", { enumerable: true, get: function () { return utils_2.debounce; } });
 Object.defineProperty(exports, "throttle", { enumerable: true, get: function () { return utils_2.throttle; } });
 Object.defineProperty(exports, "MemoryMonitor", { enumerable: true, get: function () { return utils_2.MemoryMonitor; } });
+var sync_2 = require("./sync");
+Object.defineProperty(exports, "FileWatcher", { enumerable: true, get: function () { return sync_2.FileWatcher; } });
 var mcp_1 = require("./mcp");
 Object.defineProperty(exports, "MCPServer", { enumerable: true, get: function () { return mcp_1.MCPServer; } });
 /**
@@ -108,12 +110,13 @@ class CodeGraph {
     resolver;
     graphManager;
     traverser;
-    vectorManager = null;
     contextBuilder;
     // Mutex for preventing concurrent indexing operations (in-process)
     indexMutex = new utils_1.Mutex();
     // File lock for preventing concurrent writes across processes (CLI, MCP, git hooks)
     fileLock;
+    // File watcher for auto-sync on file changes
+    watcher = null;
     constructor(db, queries, config, projectRoot) {
         this.db = db;
         this.queries = queries;
@@ -124,10 +127,7 @@ class CodeGraph {
         this.resolver = (0, resolution_1.createResolver)(projectRoot, queries);
         this.graphManager = new graph_1.GraphQueryManager(queries);
         this.traverser = new graph_1.GraphTraverser(queries);
-        // Vector manager — always created, embeddings generated lazily on first use
-        this.vectorManager = (0, vectors_1.createVectorManager)(db.getDb(), queries, {});
-        // Context builder (uses vector manager for semantic search)
-        this.contextBuilder = (0, context_1.createContextBuilder)(projectRoot, queries, this.traverser, this.vectorManager);
+        this.contextBuilder = (0, context_1.createContextBuilder)(projectRoot, queries, this.traverser);
     }
     // ===========================================================================
     // Lifecycle Methods
@@ -254,13 +254,9 @@ class CodeGraph {
      * Close the CodeGraph instance and release resources
      */
     close() {
+        this.unwatch();
         // Release file lock if held
         this.fileLock.release();
-        // Dispose vector manager first to release ONNX workers
-        if (this.vectorManager) {
-            this.vectorManager.dispose();
-            this.vectorManager = null;
-        }
         this.db.close();
     }
     // ===========================================================================
@@ -302,20 +298,20 @@ class CodeGraph {
                 this.fileLock.acquire();
             }
             catch {
-                return { success: false, filesIndexed: 0, filesSkipped: 0, nodesCreated: 0, edgesCreated: 0, errors: [{ message: 'Could not acquire file lock - another process may be indexing', severity: 'error' }], durationMs: 0 };
+                return { success: false, filesIndexed: 0, filesSkipped: 0, filesErrored: 0, nodesCreated: 0, edgesCreated: 0, errors: [{ message: 'Could not acquire file lock - another process may be indexing', severity: 'error' }], durationMs: 0 };
             }
             try {
-                const result = await this.orchestrator.indexAll(options.onProgress, options.signal);
+                const result = await this.orchestrator.indexAll(options.onProgress, options.signal, options.verbose);
                 // Resolve references to create call/import/extends edges
                 if (result.success && result.filesIndexed > 0) {
-                    // Get count of unresolved references for accurate progress
-                    const unresolvedCount = this.queries.getUnresolvedReferences().length;
+                    // Get count without loading all refs into memory
+                    const unresolvedCount = this.queries.getUnresolvedReferencesCount();
                     options.onProgress?.({
                         phase: 'resolving',
                         current: 0,
                         total: unresolvedCount,
                     });
-                    this.resolveReferences((current, total) => {
+                    await this.resolveReferencesBatched((current, total) => {
                         options.onProgress?.({
                             phase: 'resolving',
                             current,
@@ -341,7 +337,7 @@ class CodeGraph {
                 this.fileLock.acquire();
             }
             catch {
-                return { success: false, filesIndexed: 0, filesSkipped: 0, nodesCreated: 0, edgesCreated: 0, errors: [{ message: 'Could not acquire file lock - another process may be indexing', severity: 'error' }], durationMs: 0 };
+                return { success: false, filesIndexed: 0, filesSkipped: 0, filesErrored: 0, nodesCreated: 0, edgesCreated: 0, errors: [{ message: 'Could not acquire file lock - another process may be indexing', severity: 'error' }], durationMs: 0 };
             }
             try {
                 return this.orchestrator.indexFiles(filePaths);
@@ -368,22 +364,38 @@ class CodeGraph {
                 const result = await this.orchestrator.sync(options.onProgress);
                 // Resolve references if files were updated
                 if (result.filesAdded > 0 || result.filesModified > 0) {
-                    // Scope resolution to changed files when available (git fast path)
-                    const unresolvedRefs = result.changedFilePaths
-                        ? this.queries.getUnresolvedReferencesByFiles(result.changedFilePaths)
-                        : this.queries.getUnresolvedReferences();
-                    options.onProgress?.({
-                        phase: 'resolving',
-                        current: 0,
-                        total: unresolvedRefs.length,
-                    });
-                    this.resolver.resolveAndPersist(unresolvedRefs, (current, total) => {
+                    if (result.changedFilePaths) {
+                        // Scope resolution to changed files (git fast path — bounded set)
+                        const unresolvedRefs = this.queries.getUnresolvedReferencesByFiles(result.changedFilePaths);
                         options.onProgress?.({
                             phase: 'resolving',
-                            current,
-                            total,
+                            current: 0,
+                            total: unresolvedRefs.length,
                         });
-                    });
+                        this.resolver.resolveAndPersist(unresolvedRefs, (current, total) => {
+                            options.onProgress?.({
+                                phase: 'resolving',
+                                current,
+                                total,
+                            });
+                        });
+                    }
+                    else {
+                        // No git info — use batched resolution to avoid OOM
+                        const unresolvedCount = this.queries.getUnresolvedReferencesCount();
+                        options.onProgress?.({
+                            phase: 'resolving',
+                            current: 0,
+                            total: unresolvedCount,
+                        });
+                        await this.resolveReferencesBatched((current, total) => {
+                            options.onProgress?.({
+                                phase: 'resolving',
+                                current,
+                                total,
+                            });
+                        });
+                    }
                 }
                 return result;
             }
@@ -398,6 +410,43 @@ class CodeGraph {
     isIndexing() {
         return this.indexMutex.isLocked();
     }
+    // ===========================================================================
+    // File Watching
+    // ===========================================================================
+    /**
+     * Start watching for file changes and auto-syncing.
+     *
+     * Uses native OS file events (FSEvents on macOS, inotify on Linux 19+,
+     * ReadDirectoryChangesW on Windows) with debouncing to avoid thrashing.
+     *
+     * @param options - Watch options (debounce delay, callbacks)
+     * @returns true if watching started successfully
+     */
+    watch(options = {}) {
+        if (this.watcher?.isActive())
+            return true;
+        this.watcher = new sync_1.FileWatcher(this.projectRoot, this.config, async () => {
+            const result = await this.sync();
+            const filesChanged = result.filesAdded + result.filesModified + result.filesRemoved;
+            return { filesChanged, durationMs: result.durationMs };
+        }, options);
+        return this.watcher.start();
+    }
+    /**
+     * Stop watching for file changes.
+     */
+    unwatch() {
+        if (this.watcher) {
+            this.watcher.stop();
+            this.watcher = null;
+        }
+    }
+    /**
+     * Check if the file watcher is active.
+     */
+    isWatching() {
+        return this.watcher?.isActive() ?? false;
+    }
     /**
      * Get files that have changed since last index
      */
@@ -427,6 +476,13 @@ class CodeGraph {
         const unresolvedRefs = this.queries.getUnresolvedReferences();
         return this.resolver.resolveAndPersist(unresolvedRefs, onProgress);
     }
+    /**
+     * Resolve references in batches to keep memory bounded on large codebases.
+     * Processes chunks of unresolved refs, persisting results after each batch.
+     */
+    async resolveReferencesBatched(onProgress) {
+        return this.resolver.resolveAndPersistBatched(onProgress);
+    }
     /**
      * Get detected frameworks in the project
      */
@@ -679,84 +735,6 @@ class CodeGraph {
         return this.graphManager.getNodeMetrics(nodeId);
     }
     // ===========================================================================
-    // Semantic Search (Vector Embeddings)
-    // ===========================================================================
-    /**
-     * Initialize the embedding system
-     *
-     * This downloads the embedding model on first use and initializes
-     * the vector search system. Must be called before using semantic search.
-     */
-    async initializeEmbeddings() {
-        if (!this.vectorManager) {
-            this.vectorManager = (0, vectors_1.createVectorManager)(this.db.getDb(), this.queries, {
-                embedder: {
-                    showProgress: true,
-                },
-            });
-        }
-        await this.vectorManager.initialize();
-    }
-    /**
-     * Check if embeddings are initialized
-     */
-    isEmbeddingsInitialized() {
-        return this.vectorManager?.isInitialized() ?? false;
-    }
-    /**
-     * Generate embeddings for all eligible nodes
-     *
-     * @param onProgress - Optional progress callback
-     * @returns Number of nodes embedded
-     */
-    async generateEmbeddings(onProgress) {
-        if (!this.vectorManager) {
-            await this.initializeEmbeddings();
-        }
-        return this.vectorManager.embedAllNodes(onProgress);
-    }
-    /**
-     * Semantic search using embeddings
-     *
-     * Searches for code nodes semantically similar to the query.
-     * Requires embeddings to be initialized first.
-     *
-     * @param query - Natural language search query
-     * @param limit - Maximum number of results (default: 10)
-     * @returns Array of search results with similarity scores
-     */
-    async semanticSearch(query, limit = 10) {
-        if (!this.vectorManager || !this.vectorManager.isInitialized()) {
-            throw new Error('Embeddings not initialized. Call initializeEmbeddings() first.');
-        }
-        return this.vectorManager.search(query, { limit });
-    }
-    /**
-     * Find similar code blocks
-     *
-     * Finds nodes semantically similar to a given node.
-     * Requires embeddings to be initialized first.
-     *
-     * @param nodeId - ID of the node to find similar nodes for
-     * @param limit - Maximum number of results (default: 10)
-     * @returns Array of similar nodes with similarity scores
-     */
-    async findSimilar(nodeId, limit = 10) {
-        if (!this.vectorManager || !this.vectorManager.isInitialized()) {
-            throw new Error('Embeddings not initialized. Call initializeEmbeddings() first.');
-        }
-        return this.vectorManager.findSimilar(nodeId, { limit });
-    }
-    /**
-     * Get vector embedding statistics
-     */
-    getEmbeddingStats() {
-        if (!this.vectorManager) {
-            return null;
-        }
-        return this.vectorManager.getStats();
-    }
-    // ===========================================================================
     // Context Building
     // ===========================================================================
     /**
@@ -781,15 +759,13 @@ class CodeGraph {
      * @returns Subgraph of relevant nodes and edges
      */
     async findRelevantContext(query, options) {
-        // Update context builder with current vector manager
-        this.contextBuilder = (0, context_1.createContextBuilder)(this.projectRoot, this.queries, this.traverser, this.vectorManager);
         return this.contextBuilder.findRelevantContext(query, options);
     }
     /**
      * Build context for a task
      *
      * Creates comprehensive context by:
-     * 1. Running semantic search to find entry points
+     * 1. Running FTS search to find entry points
      * 2. Expanding the graph around entry points
      * 3. Extracting code blocks for key nodes
      * 4. Formatting output for Claude
@@ -799,8 +775,6 @@ class CodeGraph {
      * @returns TaskContext object or formatted string (markdown/JSON)
      */
     async buildContext(input, options) {
-        // Update context builder with current vector manager
-        this.contextBuilder = (0, context_1.createContextBuilder)(this.projectRoot, this.queries, this.traverser, this.vectorManager);
         return this.contextBuilder.buildContext(input, options);
     }
     // ===========================================================================

package/dist/index.js.map

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package/dist/installer/claude-md-template.d.ts

@@ -6,5 +6,5 @@
  */
 export declare const CODEGRAPH_SECTION_START = "<!-- CODEGRAPH_START -->";
 export declare const CODEGRAPH_SECTION_END = "<!-- CODEGRAPH_END -->";
-export declare const CLAUDE_MD_TEMPLATE = "<!-- CODEGRAPH_START -->\n## CodeGraph\n\nCodeGraph builds a semantic knowledge graph of codebases for faster, smarter code exploration.\n\n### If `.codegraph/` exists in the project\n\n**Use codegraph tools for faster exploration.** These tools provide instant lookups via the code graph instead of scanning files:\n\n| Tool | Use For |\n|------|---------|\n| `codegraph_search` | Find symbols by name (functions, classes, types) |\n| `codegraph_context` | Get relevant code context for a task |\n| `codegraph_callers` | Find what calls a function |\n| `codegraph_callees` | Find what a function calls |\n| `codegraph_impact` | See what's affected by changing a symbol |\n| `codegraph_node` | Get details + source code for a symbol |\n\n**When spawning Explore agents in a codegraph-enabled project:**\n\nTell the Explore agent to use codegraph tools for faster exploration.\n\n**For quick lookups in the main session:**\n- Use `codegraph_search` instead of grep for finding symbols\n- Use `codegraph_callers`/`codegraph_callees` to trace code flow\n- Use `codegraph_impact` before making changes to see what's affected\n\n### If `.codegraph/` does NOT exist\n\nAt the start of a session, ask the user if they'd like to initialize CodeGraph:\n\n\"I notice this project doesn't have CodeGraph initialized. Would you like me to run `codegraph init -i` to build a code knowledge graph?\"\n<!-- CODEGRAPH_END -->";
+export declare const CLAUDE_MD_TEMPLATE = "<!-- CODEGRAPH_START -->\n## CodeGraph\n\nCodeGraph builds a semantic knowledge graph of codebases for faster, smarter code exploration.\n\n### If `.codegraph/` exists in the project\n\n**NEVER call `codegraph_explore` or `codegraph_context` directly in the main session.** These tools return large amounts of source code that fills up main session context. Instead, ALWAYS spawn an Explore agent for any exploration question (e.g., \"how does X work?\", \"explain the Y system\", \"where is Z implemented?\").\n\n**When spawning Explore agents**, include this instruction in the prompt:\n\n> This project has CodeGraph initialized (.codegraph/ exists). Use `codegraph_explore` as your PRIMARY tool \u2014 it returns full source code sections from all relevant files in one call.\n>\n> **Rules:**\n> 1. Follow the explore call budget in the `codegraph_explore` tool description \u2014 it scales automatically based on project size.\n> 2. Do NOT re-read files that codegraph_explore already returned source code for. The source sections are complete and authoritative.\n> 3. Only fall back to grep/glob/read for files listed under \"Additional relevant files\" if you need more detail, or if codegraph returned no results.\n\n**The main session may only use these lightweight tools directly** (for targeted lookups before making edits, not for exploration):\n\n| Tool | Use For |\n|------|---------|\n| `codegraph_search` | Find symbols by name |\n| `codegraph_callers` / `codegraph_callees` | Trace call flow |\n| `codegraph_impact` | Check what's affected before editing |\n| `codegraph_node` | Get a single symbol's details |\n\n### If `.codegraph/` does NOT exist\n\nAt the start of a session, ask the user if they'd like to initialize CodeGraph:\n\n\"I notice this project doesn't have CodeGraph initialized. Would you like me to run `codegraph init -i` to build a code knowledge graph?\"\n<!-- CODEGRAPH_END -->";
 //# sourceMappingURL=claude-md-template.d.ts.map

package/dist/installer/claude-md-template.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"claude-md-template.d.ts","sourceRoot":"","sources":["../../src/installer/claude-md-template.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAGH,eAAO,MAAM,uBAAuB,6BAA6B,CAAC;AAClE,eAAO,MAAM,qBAAqB,2BAA2B,CAAC;AAE9D,eAAO,MAAM,kBAAkB,i4DAgCN,CAAC"}

package/dist/installer/claude-md-template.js

@@ -17,25 +17,25 @@ CodeGraph builds a semantic knowledge graph of codebases for faster, smarter cod
 
 ### If \`.codegraph/\` exists in the project
 
-**Use codegraph tools for faster exploration.** These tools provide instant lookups via the code graph instead of scanning files:
+**NEVER call \`codegraph_explore\` or \`codegraph_context\` directly in the main session.** These tools return large amounts of source code that fills up main session context. Instead, ALWAYS spawn an Explore agent for any exploration question (e.g., "how does X work?", "explain the Y system", "where is Z implemented?").
 
-| Tool | Use For |
-|------|---------|
-| \`codegraph_search\` | Find symbols by name (functions, classes, types) |
-| \`codegraph_context\` | Get relevant code context for a task |
-| \`codegraph_callers\` | Find what calls a function |
-| \`codegraph_callees\` | Find what a function calls |
-| \`codegraph_impact\` | See what's affected by changing a symbol |
-| \`codegraph_node\` | Get details + source code for a symbol |
+**When spawning Explore agents**, include this instruction in the prompt:
 
-**When spawning Explore agents in a codegraph-enabled project:**
+> This project has CodeGraph initialized (.codegraph/ exists). Use \`codegraph_explore\` as your PRIMARY tool — it returns full source code sections from all relevant files in one call.
+>
+> **Rules:**
+> 1. Follow the explore call budget in the \`codegraph_explore\` tool description — it scales automatically based on project size.
+> 2. Do NOT re-read files that codegraph_explore already returned source code for. The source sections are complete and authoritative.
+> 3. Only fall back to grep/glob/read for files listed under "Additional relevant files" if you need more detail, or if codegraph returned no results.
 
-Tell the Explore agent to use codegraph tools for faster exploration.
+**The main session may only use these lightweight tools directly** (for targeted lookups before making edits, not for exploration):
 
-**For quick lookups in the main session:**
-- Use \`codegraph_search\` instead of grep for finding symbols
-- Use \`codegraph_callers\`/\`codegraph_callees\` to trace code flow
-- Use \`codegraph_impact\` before making changes to see what's affected
+| Tool | Use For |
+|------|---------|
+| \`codegraph_search\` | Find symbols by name |
+| \`codegraph_callers\` / \`codegraph_callees\` | Trace call flow |
+| \`codegraph_impact\` | Check what's affected before editing |
+| \`codegraph_node\` | Get a single symbol's details |
 
 ### If \`.codegraph/\` does NOT exist