@colbymchenry/codegraph 0.3.1 → 0.5.1

package/dist/extraction/index.js

@@ -37,17 +37,30 @@ var __importStar = (this && this.__importStar) || (function () {
         return result;
     };
 })();
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.getSupportedLanguages = exports.isLanguageSupported = exports.detectLanguage = exports.extractFromSource = exports.ExtractionOrchestrator = void 0;
 exports.hashContent = hashContent;
 exports.shouldIncludeFile = shouldIncludeFile;
 exports.scanDirectory = scanDirectory;
 const fs = __importStar(require("fs"));
+const fsp = __importStar(require("fs/promises"));
 const path = __importStar(require("path"));
 const crypto = __importStar(require("crypto"));
+const child_process_1 = require("child_process");
 const tree_sitter_1 = require("./tree-sitter");
 const grammars_1 = require("./grammars");
 const errors_1 = require("../errors");
+const sentry_1 = require("../sentry");
+const utils_1 = require("../utils");
+const picomatch_1 = __importDefault(require("picomatch"));
+/**
+ * Number of files to read in parallel during indexing.
+ * File reads are I/O-bound; batching overlaps I/O wait with CPU parse work.
+ */
+const FILE_IO_BATCH_SIZE = 10;
 /**
  * Calculate SHA256 hash of file contents
  */
@@ -58,22 +71,8 @@ function hashContent(content) {
  * Check if a path matches any glob pattern (simplified)
  */
 function matchesGlob(filePath, pattern) {
-    // Convert glob to regex using placeholders to avoid conflicts
-    let regexStr = pattern;
-    // Replace glob patterns with placeholders first
-    regexStr = regexStr.replace(/\*\*\//g, '\x00GLOBSTAR_SLASH\x00');
-    regexStr = regexStr.replace(/\*\*/g, '\x00GLOBSTAR\x00');
-    regexStr = regexStr.replace(/\*/g, '\x00STAR\x00');
-    regexStr = regexStr.replace(/\?/g, '\x00QUESTION\x00');
-    // Escape regex special characters
-    regexStr = regexStr.replace(/[.+^${}()|[\]\\]/g, '\\$&');
-    // Replace placeholders with regex equivalents
-    regexStr = regexStr.replace(/\x00GLOBSTAR_SLASH\x00/g, '(?:.*/)?'); // **/ = zero or more dirs
-    regexStr = regexStr.replace(/\x00GLOBSTAR\x00/g, '.*'); // ** = anything
-    regexStr = regexStr.replace(/\x00STAR\x00/g, '[^/]*'); // * = anything except /
-    regexStr = regexStr.replace(/\x00QUESTION\x00/g, '.'); // ? = single char
-    const regex = new RegExp(`^${regexStr}$`);
-    return regex.test(filePath);
+    filePath = (0, utils_1.normalizePath)(filePath);
+    return picomatch_1.default.isMatch(filePath, pattern, { dot: true });
 }
 /**
  * Check if a file should be included based on config
@@ -93,25 +92,116 @@ function shouldIncludeFile(filePath, config) {
     }
     return false;
 }
+/**
+ * Get directories ignored by .gitignore using git ls-files.
+ * Returns a Set of normalized relative directory paths (forward slashes, no trailing slash).
+ * Gracefully returns empty Set on any failure.
+ */
+function getGitIgnoredDirectories(rootDir) {
+    try {
+        const output = (0, child_process_1.execFileSync)('git', ['ls-files', '-oi', '--exclude-standard', '--directory'], { cwd: rootDir, encoding: 'utf-8', timeout: 10000, stdio: ['pipe', 'pipe', 'pipe'] });
+        const dirs = new Set();
+        for (const line of output.split('\n')) {
+            const trimmed = line.trim();
+            if (trimmed.endsWith('/')) {
+                dirs.add((0, utils_1.normalizePath)(trimmed.slice(0, -1)));
+            }
+        }
+        return dirs;
+    }
+    catch {
+        return new Set();
+    }
+}
+/**
+ * Marker file name that indicates a directory (and all children) should be skipped
+ */
+const CODEGRAPH_IGNORE_MARKER = '.codegraphignore';
 /**
  * Recursively scan directory for source files
  */
 function scanDirectory(rootDir, config, onProgress) {
     const files = [];
     let count = 0;
+    // Track visited real paths to detect symlink cycles
+    const visitedDirs = new Set();
+    const gitIgnoredDirs = getGitIgnoredDirectories(rootDir);
     function walk(dir) {
+        // Resolve real path to detect symlink cycles
+        let realDir;
+        try {
+            realDir = fs.realpathSync(dir);
+        }
+        catch {
+            (0, errors_1.logDebug)('Skipping unresolvable directory', { dir });
+            return;
+        }
+        if (visitedDirs.has(realDir)) {
+            (0, errors_1.logDebug)('Skipping already-visited directory (symlink cycle)', { dir, realDir });
+            return;
+        }
+        visitedDirs.add(realDir);
+        // Check for .codegraphignore marker file - skip entire directory tree if present
+        const ignoreMarker = path.join(dir, CODEGRAPH_IGNORE_MARKER);
+        if (fs.existsSync(ignoreMarker)) {
+            (0, errors_1.logDebug)('Skipping directory due to .codegraphignore marker', { dir });
+            return;
+        }
         let entries;
         try {
             entries = fs.readdirSync(dir, { withFileTypes: true });
         }
         catch (error) {
+            (0, sentry_1.captureException)(error, { operation: 'walk-directory', dir });
             (0, errors_1.logDebug)('Skipping unreadable directory', { dir, error: String(error) });
             return;
         }
         for (const entry of entries) {
             const fullPath = path.join(dir, entry.name);
-            const relativePath = path.relative(rootDir, fullPath);
+            const relativePath = (0, utils_1.normalizePath)(path.relative(rootDir, fullPath));
+            // Follow symlinked directories, but skip symlinked files to non-project targets
+            if (entry.isSymbolicLink()) {
+                try {
+                    const realTarget = fs.realpathSync(fullPath);
+                    const stat = fs.statSync(realTarget);
+                    if (stat.isDirectory()) {
+                        // Check gitignore first (fast O(1) lookup)
+                        if (gitIgnoredDirs.has(relativePath)) {
+                            continue;
+                        }
+                        // Check exclusion, then recurse (cycle detection handles the rest)
+                        const dirPattern = relativePath + '/';
+                        let excluded = false;
+                        for (const pattern of config.exclude) {
+                            if (matchesGlob(dirPattern, pattern) || matchesGlob(relativePath, pattern)) {
+                                excluded = true;
+                                break;
+                            }
+                        }
+                        if (!excluded) {
+                            walk(fullPath);
+                        }
+                    }
+                    else if (stat.isFile()) {
+                        if (shouldIncludeFile(relativePath, config)) {
+                            files.push(relativePath);
+                            count++;
+                            if (onProgress) {
+                                onProgress(count, relativePath);
+                            }
+                        }
+                    }
+                }
+                catch {
+                    (0, errors_1.logDebug)('Skipping broken symlink', { path: fullPath });
+                }
+                continue;
+            }
             if (entry.isDirectory()) {
+                // Check gitignore first (fast O(1) lookup)
+                if (gitIgnoredDirs.has(relativePath)) {
+                    continue;
+                }
                 // Check if directory should be excluded
                 const dirPattern = relativePath + '/';
                 let excluded = false;
@@ -186,9 +276,10 @@ class ExtractionOrchestrator {
                 durationMs: Date.now() - startTime,
             };
         }
-        // Phase 2: Parse files
+        // Phase 2: Parse files (read in parallel batches, parse/store sequentially)
         const total = files.length;
-        for (let i = 0; i < files.length; i++) {
+        let processed = 0;
+        for (let i = 0; i < files.length; i += FILE_IO_BATCH_SIZE) {
             if (signal?.aborted) {
                 return {
                     success: false,
@@ -200,24 +291,62 @@ class ExtractionOrchestrator {
                     durationMs: Date.now() - startTime,
                 };
             }
-            const filePath = files[i];
-            onProgress?.({
-                phase: 'parsing',
-                current: i + 1,
-                total,
-                currentFile: filePath,
-            });
-            const result = await this.indexFile(filePath);
-            if (result.errors.length > 0) {
-                errors.push(...result.errors);
-            }
-            if (result.nodes.length > 0) {
-                filesIndexed++;
-                totalNodes += result.nodes.length;
-                totalEdges += result.edges.length;
-            }
-            else if (result.errors.length === 0) {
-                filesSkipped++;
+            const batch = files.slice(i, i + FILE_IO_BATCH_SIZE);
+            // Read files in parallel (with path validation before any I/O)
+            const fileContents = await Promise.all(batch.map(async (fp) => {
+                try {
+                    const fullPath = (0, utils_1.validatePathWithinRoot)(this.rootDir, fp);
+                    if (!fullPath) {
+                        (0, errors_1.logWarn)('Path traversal blocked in batch reader', { filePath: fp });
+                        return { filePath: fp, content: null, stats: null, error: new Error('Path traversal blocked') };
+                    }
+                    const content = await fsp.readFile(fullPath, 'utf-8');
+                    const stats = await fsp.stat(fullPath);
+                    return { filePath: fp, content, stats, error: null };
+                }
+                catch (err) {
+                    return { filePath: fp, content: null, stats: null, error: err };
+                }
+            }));
+            // Parse and store sequentially
+            for (const { filePath, content, stats, error } of fileContents) {
+                if (signal?.aborted) {
+                    return {
+                        success: false,
+                        filesIndexed,
+                        filesSkipped,
+                        nodesCreated: totalNodes,
+                        edgesCreated: totalEdges,
+                        errors: [{ message: 'Aborted', severity: 'error' }, ...errors],
+                        durationMs: Date.now() - startTime,
+                    };
+                }
+                processed++;
+                onProgress?.({
+                    phase: 'parsing',
+                    current: processed,
+                    total,
+                    currentFile: filePath,
+                });
+                if (error || content === null || stats === null) {
+                    errors.push({
+                        message: `Failed to read file: ${error instanceof Error ? error.message : String(error)}`,
+                        severity: 'error',
+                    });
+                    continue;
+                }
+                const result = await this.indexFileWithContent(filePath, content, stats);
+                if (result.errors.length > 0) {
+                    errors.push(...result.errors);
+                }
+                if (result.nodes.length > 0) {
+                    filesIndexed++;
+                    totalNodes += result.nodes.length;
+                    totalEdges += result.edges.length;
+                }
+                else if (result.errors.length === 0) {
+                    filesSkipped++;
+                }
             }
         }
         // Phase 3: Resolve references
@@ -275,15 +404,25 @@ class ExtractionOrchestrator {
      * Index a single file
      */
     async indexFile(relativePath) {
-        const fullPath = path.join(this.rootDir, relativePath);
-        // Check file exists and is readable
+        const fullPath = (0, utils_1.validatePathWithinRoot)(this.rootDir, relativePath);
+        if (!fullPath) {
+            return {
+                nodes: [],
+                edges: [],
+                unresolvedReferences: [],
+                errors: [{ message: `Path traversal blocked: ${relativePath}`, severity: 'error' }],
+                durationMs: 0,
+            };
+        }
+        // Read file content and stats
         let content;
         let stats;
         try {
-            stats = fs.statSync(fullPath);
-            content = fs.readFileSync(fullPath, 'utf-8');
+            stats = await fsp.stat(fullPath);
+            content = await fsp.readFile(fullPath, 'utf-8');
         }
         catch (error) {
+            (0, sentry_1.captureException)(error, { operation: 'extract-file', filePath: fullPath });
             return {
                 nodes: [],
                 edges: [],
@@ -297,6 +436,25 @@ class ExtractionOrchestrator {
                 durationMs: 0,
             };
         }
+        return this.indexFileWithContent(relativePath, content, stats);
+    }
+    /**
+     * Index a single file with pre-read content and stats.
+     * Used by the parallel batch reader to avoid redundant file I/O.
+     */
+    async indexFileWithContent(relativePath, content, stats) {
+        // Prevent path traversal
+        const fullPath = (0, utils_1.validatePathWithinRoot)(this.rootDir, relativePath);
+        if (!fullPath) {
+            (0, errors_1.logWarn)('Path traversal blocked in indexFileWithContent', { relativePath });
+            return {
+                nodes: [],
+                edges: [],
+                unresolvedReferences: [],
+                errors: [{ message: 'Path traversal blocked', severity: 'error' }],
+                durationMs: 0,
+            };
+        }
         // Check file size
         if (stats.size > this.config.maxFileSize) {
             return {
@@ -353,9 +511,14 @@ class ExtractionOrchestrator {
         if (result.edges.length > 0) {
             this.queries.insertEdges(result.edges);
         }
-        // Insert unresolved references
-        for (const ref of result.unresolvedReferences) {
-            this.queries.insertUnresolvedRef(ref);
+        // Insert unresolved references in batch with denormalized filePath/language
+        if (result.unresolvedReferences.length > 0) {
+            const refsWithContext = result.unresolvedReferences.map((ref) => ({
+                ...ref,
+                filePath: ref.filePath ?? filePath,
+                language: ref.language ?? language,
+            }));
+            this.queries.insertUnresolvedRefsBatch(refsWithContext);
         }
         // Insert file record
         const fileRecord = {
@@ -406,6 +569,7 @@ class ExtractionOrchestrator {
                 content = fs.readFileSync(fullPath, 'utf-8');
             }
             catch (error) {
+                (0, sentry_1.captureException)(error, { operation: 'sync-read-file', filePath });
                 (0, errors_1.logDebug)('Skipping unreadable file during sync', { filePath, error: String(error) });
                 continue;
             }
@@ -467,6 +631,7 @@ class ExtractionOrchestrator {
                 content = fs.readFileSync(fullPath, 'utf-8');
             }
             catch (error) {
+                (0, sentry_1.captureException)(error, { operation: 'detect-changes-read-file', filePath });
                 (0, errors_1.logDebug)('Skipping unreadable file while detecting changes', { filePath, error: String(error) });
                 continue;
             }

package/dist/extraction/index.js.map

@@ -1 +1 @@
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package/dist/extraction/tree-sitter.d.ts

@@ -46,6 +46,11 @@ export declare class TreeSitterExtractor {
      * Check if a node has a child of a specific type
      */
     private hasChildOfType;
+    /**
+     * Check if the current node stack indicates we are inside a class-like node
+     * (class, struct, interface, trait). File nodes do not count as class-like.
+     */
+    private isInsideClassLikeNode;
     /**
      * Extract a function
      */
@@ -70,8 +75,36 @@ export declare class TreeSitterExtractor {
      * Extract an enum
      */
     private extractEnum;
+    /**
+     * Extract a variable declaration (const, let, var, etc.)
+     *
+     * Extracts top-level and module-level variable declarations.
+     * Captures the variable name and first 100 chars of initializer in signature for searchability.
+     */
+    private extractVariable;
+    /**
+     * Extract a type alias (e.g. `export type X = ...` in TypeScript)
+     */
+    private extractTypeAlias;
+    /**
+     * Extract an exported variable declaration that isn't a function.
+     * Handles patterns like:
+     *   export const X = create(...)
+     *   export const X = { ... }
+     *   export const X = [...]
+     *   export const X = "value"
+     *
+     * This is called for `export_statement` nodes that contain a
+     * `lexical_declaration` with `variable_declarator` children whose
+     * values are NOT already handled by functionTypes (arrow_function,
+     * function_expression).
+     */
+    private extractExportedVariables;
     /**
      * Extract an import
+     *
+     * Creates an import node with the full import statement stored in signature for searchability.
+     * Also creates unresolved references for resolution purposes.
      */
     private extractImport;
     /**
@@ -137,6 +170,40 @@ export declare class LiquidExtractor {
      */
     private getLineStart;
 }
+/**
+ * SvelteExtractor - Extracts code relationships from Svelte component files
+ *
+ * Svelte files are multi-language (script + template + style). Rather than
+ * parsing the full Svelte grammar, we extract the <script> block content
+ * and delegate it to the TypeScript/JavaScript TreeSitterExtractor.
+ *
+ * Every .svelte file produces a component node (Svelte components are always importable).
+ */
+export declare class SvelteExtractor {
+    private filePath;
+    private source;
+    private nodes;
+    private edges;
+    private unresolvedReferences;
+    private errors;
+    constructor(filePath: string, source: string);
+    /**
+     * Extract from Svelte source
+     */
+    extract(): ExtractionResult;
+    /**
+     * Create a component node for the .svelte file
+     */
+    private createComponentNode;
+    /**
+     * Extract <script> blocks from the Svelte source
+     */
+    private extractScriptBlocks;
+    /**
+     * Process a script block by delegating to TreeSitterExtractor
+     */
+    private processScriptBlock;
+}
 /**
  * Extract nodes and edges from source code
  */

package/dist/extraction/tree-sitter.d.ts.map

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