@colbymchenry/codegraph-darwin-x64 1.0.0 → 1.1.0

package/lib/dist/mcp/daemon-registry.js

@@ -0,0 +1,229 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.getRegistryDir = getRegistryDir;
+exports.isProcessAlive = isProcessAlive;
+exports.registerDaemon = registerDaemon;
+exports.deregisterDaemon = deregisterDaemon;
+exports.listDaemons = listDaemons;
+exports.stopDaemonAt = stopDaemonAt;
+exports.stopAllDaemons = stopAllDaemons;
+/**
+ * Global daemon registry + stop/list control — the discovery layer behind
+ * `codegraph list` and `codegraph stop [--all]`.
+ *
+ * Every per-project daemon already writes an authoritative lockfile at
+ * `<root>/.codegraph/daemon.pid`. That's enough to stop ONE daemon you can name,
+ * but there's no central place to find them ALL — which `list` and `stop --all`
+ * need. So each daemon also drops a tiny record under `~/.codegraph/daemons/` on
+ * start and removes it on graceful shutdown.
+ *
+ * The registry is a DISCOVERY index, never a source of truth: the live pid is.
+ * A SIGKILL'd daemon can't remove its own record, so readers prune any record
+ * whose pid is dead (`isProcessAlive`). Every write/read is best-effort — a
+ * registry hiccup must never break the daemon or a command; worst case `list`
+ * momentarily misses or over-lists one, which the next liveness prune corrects.
+ *
+ * Cross-platform by construction: only files + `process.kill(pid, signal)`,
+ * which behave consistently on macOS/Linux (real signals) and Windows (mapped to
+ * TerminateProcess). Validated live on all three.
+ */
+const fs = __importStar(require("fs"));
+const os = __importStar(require("os"));
+const path = __importStar(require("path"));
+const crypto = __importStar(require("crypto"));
+const daemon_paths_1 = require("./daemon-paths");
+/**
+ * `~/.codegraph/daemons` — GLOBAL, keyed off the home install dir. (The
+ * `CODEGRAPH_DIR` env var only renames the per-project index dir, not this.)
+ */
+function getRegistryDir() {
+    return path.join(os.homedir(), '.codegraph', 'daemons');
+}
+function recordPath(root) {
+    const hash = crypto.createHash('sha256').update(path.resolve(root)).digest('hex').slice(0, 16);
+    return path.join(getRegistryDir(), `${hash}.json`);
+}
+/**
+ * Is `pid` a live process? `kill(pid, 0)` sends no signal — it just probes:
+ * ESRCH ⇒ dead, EPERM ⇒ alive but not ours (still alive). Same liveness check
+ * the PPID watchdog (#277) and daemon lock arbitration use.
+ */
+function isProcessAlive(pid) {
+    if (!Number.isInteger(pid) || pid <= 0)
+        return false;
+    try {
+        process.kill(pid, 0);
+        return true;
+    }
+    catch (err) {
+        return err.code === 'EPERM';
+    }
+}
+/** Best-effort: record this daemon so `list`/`stop --all` can find it. */
+function registerDaemon(rec) {
+    try {
+        fs.mkdirSync(getRegistryDir(), { recursive: true });
+        fs.writeFileSync(recordPath(rec.root), JSON.stringify(rec, null, 2) + '\n', { mode: 0o600 });
+    }
+    catch {
+        /* best-effort — list's liveness prune tolerates a missing record */
+    }
+}
+/** Best-effort: drop this daemon's record on graceful shutdown. */
+function deregisterDaemon(root) {
+    try {
+        fs.unlinkSync(recordPath(root));
+    }
+    catch {
+        /* already gone */
+    }
+}
+/**
+ * All registered daemons whose process is still alive, newest first. Dead/garbage
+ * records are deleted as a side effect (self-healing) unless `prune` is false.
+ */
+function listDaemons(opts = {}) {
+    const prune = opts.prune ?? true;
+    const dir = getRegistryDir();
+    let files;
+    try {
+        files = fs.readdirSync(dir).filter((f) => f.endsWith('.json'));
+    }
+    catch {
+        return []; // no registry dir yet
+    }
+    const live = [];
+    for (const file of files) {
+        const full = path.join(dir, file);
+        let rec = null;
+        try {
+            rec = JSON.parse(fs.readFileSync(full, 'utf8'));
+        }
+        catch {
+            rec = null;
+        }
+        const valid = rec && typeof rec.pid === 'number' && typeof rec.root === 'string';
+        if (valid && isProcessAlive(rec.pid)) {
+            live.push(rec);
+        }
+        else if (prune) {
+            try {
+                fs.unlinkSync(full);
+            }
+            catch { /* ignore */ }
+        }
+    }
+    return live.sort((a, b) => b.startedAt - a.startedAt);
+}
+/** Remove a stopped daemon's leftover lockfile + socket + registry record. */
+function cleanupDaemonArtifacts(root) {
+    try {
+        fs.unlinkSync((0, daemon_paths_1.getDaemonPidPath)(root));
+    }
+    catch { /* gone */ }
+    // POSIX sockets are real files; Windows named pipes vanish with the process.
+    if (process.platform !== 'win32') {
+        try {
+            fs.unlinkSync((0, daemon_paths_1.getDaemonSocketPath)(root));
+        }
+        catch { /* gone */ }
+    }
+    deregisterDaemon(root);
+}
+const sleep = (ms) => new Promise((r) => setTimeout(r, ms));
+async function waitForDeath(pid, timeoutMs) {
+    const deadline = Date.now() + timeoutMs;
+    while (Date.now() < deadline) {
+        if (!isProcessAlive(pid))
+            return true;
+        await sleep(100);
+    }
+    return !isProcessAlive(pid);
+}
+/**
+ * Stop the daemon serving `root`: SIGTERM, wait, then SIGKILL if it won't go,
+ * then sweep its artifacts. `root` must be realpath'd (match how the daemon
+ * keys its socket/lockfile). Resolves the pid from the authoritative lockfile,
+ * falling back to the registry.
+ */
+async function stopDaemonAt(root) {
+    let pid = null;
+    try {
+        const info = (0, daemon_paths_1.decodeLockInfo)(fs.readFileSync((0, daemon_paths_1.getDaemonPidPath)(root), 'utf8'));
+        pid = info?.pid ?? null;
+    }
+    catch {
+        /* no lockfile */
+    }
+    if (pid == null) {
+        const rec = listDaemons({ prune: false }).find((r) => path.resolve(r.root) === path.resolve(root));
+        pid = rec?.pid ?? null;
+    }
+    if (pid == null) {
+        cleanupDaemonArtifacts(root);
+        return { root, pid: null, outcome: 'no-daemon' };
+    }
+    if (!isProcessAlive(pid)) {
+        cleanupDaemonArtifacts(root);
+        return { root, pid, outcome: 'not-running' };
+    }
+    // POSIX: SIGTERM runs the daemon's graceful shutdown. Windows: TerminateProcess
+    // (no graceful path), so we always sweep artifacts ourselves below.
+    try {
+        process.kill(pid, 'SIGTERM');
+    }
+    catch { /* raced to exit */ }
+    let outcome = 'term';
+    if (!(await waitForDeath(pid, 3000))) {
+        try {
+            process.kill(pid, 'SIGKILL');
+        }
+        catch { /* raced to exit */ }
+        await waitForDeath(pid, 2000);
+        outcome = 'kill';
+    }
+    cleanupDaemonArtifacts(root);
+    return { root, pid, outcome };
+}
+/** Stop every registered, live daemon. */
+async function stopAllDaemons() {
+    const results = [];
+    for (const rec of listDaemons()) {
+        results.push(await stopDaemonAt(rec.root));
+    }
+    return results;
+}
+//# sourceMappingURL=daemon-registry.js.map

package/lib/dist/mcp/daemon-registry.js.map

@@ -0,0 +1 @@
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package/lib/dist/mcp/daemon.d.ts.map

@@ -1 +1 @@
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package/lib/dist/mcp/daemon.js

@@ -88,6 +88,7 @@ const session_1 = require("./session");
 const transport_1 = require("./transport");
 const daemon_paths_1 = require("./daemon-paths");
 const version_1 = require("./version");
+const daemon_registry_1 = require("./daemon-registry");
 /** Default idle linger after the last client disconnects. */
 const DEFAULT_IDLE_TIMEOUT_MS = 300_000;
 /**
@@ -184,6 +185,9 @@ class Daemon {
             socketPath: this.socketPath,
             startedAt: Date.now(),
         };
+        // Drop a discovery record so `codegraph list` / `stop --all` can find us.
+        // Best-effort; a missing record only means list's liveness prune covers it.
+        (0, daemon_registry_1.registerDaemon)({ root: this.projectRoot, ...lock });
         process.stderr.write(`[CodeGraph daemon] Listening on ${this.socketPath} (pid ${process.pid}, v${version_1.CodeGraphPackageVersion}). Idle timeout ${this.idleTimeoutMs}ms.\n`);
         // No clients yet: arm the idle timer immediately so a daemon that nobody
         // ever connects to (e.g. spawned then abandoned because the launcher died)
@@ -233,6 +237,7 @@ class Daemon {
         }
         this.engine.stop();
         this.cleanupLockfile();
+        (0, daemon_registry_1.deregisterDaemon)(this.projectRoot);
         if (process.platform !== 'win32') {
             try {
                 fs.unlinkSync(this.socketPath);

package/lib/dist/mcp/daemon.js.map

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package/lib/dist/mcp/engine.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"engine.d.ts","sourceRoot":"","sources":["../../src/mcp/engine.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAKH,OAAO,EAAE,WAAW,EAAE,MAAM,SAAS,CAAC;AAWtC,MAAM,WAAW,gBAAgB;IAC/B;;;;OAIG;IACH,KAAK,CAAC,EAAE,OAAO,CAAC;CACjB;AAED;;;;;GAKG;AACH,qBAAa,SAAS;IACpB,OAAO,CAAC,EAAE,CAA0B;IACpC,OAAO,CAAC,WAAW,CAAc;IAIjC,OAAO,CAAC,WAAW,CAAuB;IAE1C,OAAO,CAAC,WAAW,CAA8B;IACjD,OAAO,CAAC,cAAc,CAAS;IAC/B,OAAO,CAAC,IAAI,CAA6B;IACzC,OAAO,CAAC,MAAM,CAAS;gBAEX,IAAI,GAAE,gBAAqB;IAKvC;;;;;OAKG;IACH,kBAAkB,CAAC,WAAW,EAAE,MAAM,GAAG,IAAI;IAK7C,0EAA0E;IAC1E,cAAc,IAAI,MAAM,GAAG,IAAI;IAI/B,yEAAyE;IACzE,cAAc,IAAI,WAAW;IAI7B,uDAAuD;IACvD,mBAAmB,IAAI,OAAO;IAI9B;;;;;;;;OAQG;IACG,iBAAiB,CAAC,UAAU,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAmB1D;;;;OAIG;IACH,mBAAmB,CAAC,UAAU,EAAE,MAAM,GAAG,IAAI;IAsB7C;;;OAGG;IACH,IAAI,IAAI,IAAI;YAUE,YAAY;IAsB1B;;;;;;OAMG;IACH,OAAO,CAAC,aAAa;IAuDrB;;;;;;;;;OASG;IACH,OAAO,CAAC,WAAW;CAiBpB;AAED;;;;;;;;;;;;GAYG;AACH,wBAAgB,gBAAgB,CAAC,GAAG,EAAE,MAAM,GAAG,SAAS,GAAG,MAAM,GAAG,SAAS,CAM5E"}

package/lib/dist/mcp/engine.js

@@ -205,6 +205,14 @@ class MCPEngine {
             onSyncError: (err) => {
                 process.stderr.write(`[CodeGraph MCP] Auto-sync error: ${err.message}\n`);
             },
+            onDegraded: (reason) => {
+                // Live watching gave up permanently (watch-resource exhaustion or a
+                // write lock held past the retry budget). Say so loudly and ONCE — the
+                // graph will no longer auto-update, so a long-running MCP session must
+                // not keep assuming it's fresh. The reason already names the remedy
+                // (`codegraph sync` / git sync hooks).
+                process.stderr.write(`[CodeGraph MCP] File watcher degraded — ${reason}\n`);
+            },
         });
         this.watcherStarted = true;
         if (started) {

package/lib/dist/mcp/engine.js.map

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package/lib/dist/mcp/index.d.ts

@@ -50,6 +50,7 @@ export declare class MCPServer {
     private engine;
     private daemon;
     private ppidWatchdog;
+    private livenessWatchdog;
     private originalPpid;
     private hostPpid;
     private stopped;

package/lib/dist/mcp/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/mcp/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAkCG;AA0KH;;;;;;;;;;GAUG;AACH,qBAAa,SAAS;IACpB,OAAO,CAAC,WAAW,CAAgB;IAGnC,OAAO,CAAC,OAAO,CAA2B;IAC1C,OAAO,CAAC,MAAM,CAA0B;IACxC,OAAO,CAAC,MAAM,CAAuB;IACrC,OAAO,CAAC,YAAY,CAA+C;IAGnE,OAAO,CAAC,gBAAgB,CAA+B;IAGvD,OAAO,CAAC,YAAY,CAAwB;IAC5C,OAAO,CAAC,QAAQ,CAA4D;IAE5E,OAAO,CAAC,OAAO,CAAS;IACxB,OAAO,CAAC,IAAI,CAA4D;gBAE5D,WAAW,CAAC,EAAE,MAAM;IAIhC;;;;;;;;;;;;OAYG;IACG,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IA2C5B;;;;OAIG;IACH,IAAI,IAAI,IAAI;IA2BZ,uEAAuE;YACzD,WAAW;IA+BzB;;;;;;;;OAQG;YACW,kBAAkB;IAqChC;;;;;;;OAOG;YACW,0BAA0B;IAoBxC,iFAAiF;IACjF,OAAO,CAAC,qBAAqB;IAK7B;;;;OAIG;IACH,OAAO,CAAC,mBAAmB;CAoB5B;AAWD,OAAO,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC;AAC7C,OAAO,EAAE,KAAK,EAAE,WAAW,EAAE,MAAM,SAAS,CAAC;AAE7C,OAAO,EAAE,MAAM,EAAE,MAAM,UAAU,CAAC;AAClC,OAAO,EAAE,uBAAuB,EAAE,MAAM,WAAW,CAAC"}

package/lib/dist/mcp/index.js

@@ -81,6 +81,7 @@ const proxy_1 = require("./proxy");
 const daemon_paths_1 = require("./daemon-paths");
 const telemetry_1 = require("../telemetry");
 const ppid_watchdog_1 = require("./ppid-watchdog");
+const liveness_watchdog_1 = require("./liveness-watchdog");
 const stdin_teardown_1 = require("./stdin-teardown");
 const wasm_runtime_flags_1 = require("../extraction/wasm-runtime-flags");
 /**
@@ -251,6 +252,9 @@ class MCPServer {
     engine = null;
     daemon = null;
     ppidWatchdog = null;
+    // Worker-thread liveness watchdog (#850). Long-lived modes only; SIGKILLs the
+    // process if the main thread wedges in a non-yielding sync loop.
+    livenessWatchdog = null;
     // PPID watchdog baseline — captured at construction so we always have a
     // baseline, even if start() runs after a fork-style reparent.
     originalPpid = process.ppid;
@@ -326,6 +330,10 @@ class MCPServer {
             clearInterval(this.ppidWatchdog);
             this.ppidWatchdog = null;
         }
+        if (this.livenessWatchdog) {
+            this.livenessWatchdog.stop();
+            this.livenessWatchdog = null;
+        }
         if (this.daemon) {
             void this.daemon.stop('stop()');
             // Daemon.stop calls process.exit; nothing else to do.
@@ -366,6 +374,7 @@ class MCPServer {
         this.mode = 'direct';
         this.installSignalHandlers();
         this.installPpidWatchdog();
+        this.livenessWatchdog = (0, liveness_watchdog_1.installMainThreadWatchdog)();
     }
     /**
      * Run as the detached shared daemon (process spawned with
@@ -385,6 +394,10 @@ class MCPServer {
                 await daemon.start();
                 this.daemon = daemon;
                 this.mode = 'daemon';
+                // The detached daemon has no PPID watchdog or stdin lifeline, so a
+                // wedged main thread would pin a core forever (#850). The liveness
+                // watchdog is its only recovery path.
+                this.livenessWatchdog = (0, liveness_watchdog_1.installMainThreadWatchdog)();
                 return; // the net.Server keeps the process alive
             }
             // Taken. If the holder is alive, another daemon already serves (or is

package/lib/dist/mcp/index.js.map

@@ -1 +1 @@
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package/lib/dist/mcp/liveness-watchdog.d.ts

@@ -0,0 +1,18 @@
+/** Default: 60s — ~300× shorter than the 5h #850 wedge, far longer than any real main-thread block. */
+export declare const DEFAULT_WATCHDOG_TIMEOUT_MS = 60000;
+/** Parse the timeout env, falling back to the default for missing/invalid values. */
+export declare function parseWatchdogTimeoutMs(raw: string | undefined, fallback?: number): number;
+/** Derive a heartbeat cadence that emits several beats inside the timeout window. */
+export declare function deriveCheckIntervalMs(timeoutMs: number): number;
+export interface WatchdogHandle {
+    /** Stop heartbeating and shut the watchdog child down. Idempotent. */
+    stop(): void;
+}
+/**
+ * Install the main-thread liveness watchdog for a long-lived process. Returns a
+ * handle to stop it, or `null` when disabled or when the child can't be spawned
+ * (degraded, never throws — a missing watchdog must never keep a process from
+ * starting).
+ */
+export declare function installMainThreadWatchdog(): WatchdogHandle | null;
+//# sourceMappingURL=liveness-watchdog.d.ts.map

package/lib/dist/mcp/liveness-watchdog.d.ts.map

@@ -0,0 +1 @@
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