@colbymchenry/codegraph-darwin-x64 0.9.6 → 0.9.7

package/lib/dist/index.js.map

@@ -1 +1 @@
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package/lib/dist/installer/config-writer.d.ts

@@ -13,17 +13,16 @@
 export type InstallLocation = 'global' | 'local';
 /**
  * Each shim calls ONLY the named per-file helper — writeMcpConfig
- * writes only the MCP JSON, writePermissions only settings.json,
- * writeClaudeMd only CLAUDE.md. The full multi-file install lives
- * in `claudeTarget.install()` which the new orchestrator uses.
+ * writes only the MCP JSON, writePermissions only settings.json. The
+ * full multi-file install lives in `claudeTarget.install()` which the
+ * new orchestrator uses.
+ *
+ * There is no `writeClaudeMd` shim anymore: codegraph stopped writing a
+ * CLAUDE.md instructions block (issue #529) now that the MCP server's
+ * `initialize` instructions are the single source of truth.
  */
 export declare function writeMcpConfig(location: InstallLocation): void;
 export declare function writePermissions(location: InstallLocation): void;
-export declare function writeClaudeMd(location: InstallLocation): {
-    created: boolean;
-    updated: boolean;
-};
 export declare function hasMcpConfig(location: InstallLocation): boolean;
 export declare function hasPermissions(location: InstallLocation): boolean;
-export declare function hasClaudeMdSection(location: InstallLocation): boolean;
 //# sourceMappingURL=config-writer.d.ts.map

package/lib/dist/installer/config-writer.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"config-writer.d.ts","sourceRoot":"","sources":["../../src/installer/config-writer.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAYH,MAAM,MAAM,eAAe,GAAG,QAAQ,GAAG,OAAO,CAAC;AAEjD;;;;;GAKG;AACH,wBAAgB,cAAc,CAAC,QAAQ,EAAE,eAAe,GAAG,IAAI,CAE9D;AAED,wBAAgB,gBAAgB,CAAC,QAAQ,EAAE,eAAe,GAAG,IAAI,CAEhE;AAED,wBAAgB,aAAa,CAAC,QAAQ,EAAE,eAAe,GAAG;IAAE,OAAO,EAAE,OAAO,CAAC;IAAC,OAAO,EAAE,OAAO,CAAA;CAAE,CAM/F;AAED,wBAAgB,YAAY,CAAC,QAAQ,EAAE,eAAe,GAAG,OAAO,CAQ/D;AAED,wBAAgB,cAAc,CAAC,QAAQ,EAAE,eAAe,GAAG,OAAO,CAQjE;AAED,wBAAgB,kBAAkB,CAAC,QAAQ,EAAE,eAAe,GAAG,OAAO,CAWrE"}
+{"version":3,"file":"config-writer.d.ts","sourceRoot":"","sources":["../../src/installer/config-writer.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAUH,MAAM,MAAM,eAAe,GAAG,QAAQ,GAAG,OAAO,CAAC;AAEjD;;;;;;;;;GASG;AACH,wBAAgB,cAAc,CAAC,QAAQ,EAAE,eAAe,GAAG,IAAI,CAE9D;AAED,wBAAgB,gBAAgB,CAAC,QAAQ,EAAE,eAAe,GAAG,IAAI,CAEhE;AAED,wBAAgB,YAAY,CAAC,QAAQ,EAAE,eAAe,GAAG,OAAO,CAQ/D;AAED,wBAAgB,cAAc,CAAC,QAAQ,EAAE,eAAe,GAAG,OAAO,CAQjE"}

package/lib/dist/installer/config-writer.js

@@ -47,20 +47,21 @@ var __importStar = (this && this.__importStar) || (function () {
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.writeMcpConfig = writeMcpConfig;
 exports.writePermissions = writePermissions;
-exports.writeClaudeMd = writeClaudeMd;
 exports.hasMcpConfig = hasMcpConfig;
 exports.hasPermissions = hasPermissions;
-exports.hasClaudeMdSection = hasClaudeMdSection;
-const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const os = __importStar(require("os"));
 const claude_1 = require("./targets/claude");
 const shared_1 = require("./targets/shared");
 /**
  * Each shim calls ONLY the named per-file helper — writeMcpConfig
- * writes only the MCP JSON, writePermissions only settings.json,
- * writeClaudeMd only CLAUDE.md. The full multi-file install lives
- * in `claudeTarget.install()` which the new orchestrator uses.
+ * writes only the MCP JSON, writePermissions only settings.json. The
+ * full multi-file install lives in `claudeTarget.install()` which the
+ * new orchestrator uses.
+ *
+ * There is no `writeClaudeMd` shim anymore: codegraph stopped writing a
+ * CLAUDE.md instructions block (issue #529) now that the MCP server's
+ * `initialize` instructions are the single source of truth.
  */
 function writeMcpConfig(location) {
     (0, claude_1.writeMcpEntry)(location);
@@ -68,13 +69,6 @@ function writeMcpConfig(location) {
 function writePermissions(location) {
     (0, claude_1.writePermissionsEntry)(location);
 }
-function writeClaudeMd(location) {
-    const file = (0, claude_1.writeInstructionsEntry)(location);
-    return {
-        created: file.action === 'created',
-        updated: file.action === 'updated',
-    };
-}
 function hasMcpConfig(location) {
     // local scope lives in ./.mcp.json (project scope); global is the
     // user-scope ~/.claude.json. Mirrors the Claude target's paths.
@@ -94,18 +88,4 @@ function hasPermissions(location) {
         return false;
     return allow.some((p) => p.startsWith('mcp__codegraph__'));
 }
-function hasClaudeMdSection(location) {
-    const file = location === 'global'
-        ? path.join(os.homedir(), '.claude', 'CLAUDE.md')
-        : path.join(process.cwd(), '.claude', 'CLAUDE.md');
-    try {
-        if (!fs.existsSync(file))
-            return false;
-        const content = fs.readFileSync(file, 'utf-8');
-        return content.includes('<!-- CODEGRAPH_START -->') || content.includes('## CodeGraph');
-    }
-    catch {
-        return false;
-    }
-}
 //# sourceMappingURL=config-writer.js.map

package/lib/dist/installer/config-writer.js.map

@@ -1 +1 @@
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+{"version":3,"file":"config-writer.js","sourceRoot":"","sources":["../../src/installer/config-writer.ts"],"names":[],"mappings":";AAAA;;;;;;;;;;;GAWG;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAsBH,wCAEC;AAED,4CAEC;AAED,oCAQC;AAED,wCAQC;AA9CD,2CAA6B;AAC7B,uCAAyB;AACzB,6CAG0B;AAC1B,6CAAgD;AAIhD;;;;;;;;;GASG;AACH,SAAgB,cAAc,CAAC,QAAyB;IACtD,IAAA,sBAAa,EAAC,QAAQ,CAAC,CAAC;AAC1B,CAAC;AAED,SAAgB,gBAAgB,CAAC,QAAyB;IACxD,IAAA,8BAAqB,EAAC,QAAQ,CAAC,CAAC;AAClC,CAAC;AAED,SAAgB,YAAY,CAAC,QAAyB;IACpD,kEAAkE;IAClE,gEAAgE;IAChE,MAAM,IAAI,GAAG,QAAQ,KAAK,QAAQ;QAChC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,OAAO,EAAE,EAAE,cAAc,CAAC;QACzC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE,WAAW,CAAC,CAAC;IAC1C,MAAM,MAAM,GAAG,IAAA,qBAAY,EAAC,IAAI,CAAC,CAAC;IAClC,OAAO,CAAC,CAAC,MAAM,CAAC,UAAU,EAAE,SAAS,CAAC;AACxC,CAAC;AAED,SAAgB,cAAc,CAAC,QAAyB;IACtD,MAAM,IAAI,GAAG,QAAQ,KAAK,QAAQ;QAChC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,OAAO,EAAE,EAAE,SAAS,EAAE,eAAe,CAAC;QACrD,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE,SAAS,EAAE,eAAe,CAAC,CAAC;IACzD,MAAM,QAAQ,GAAG,IAAA,qBAAY,EAAC,IAAI,CAAC,CAAC;IACpC,MAAM,KAAK,GAAG,QAAQ,CAAC,WAAW,EAAE,KAAK,CAAC;IAC1C,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,KAAK,CAAC;QAAE,OAAO,KAAK,CAAC;IACxC,OAAO,KAAK,CAAC,IAAI,CAAC,CAAC,CAAS,EAAE,EAAE,CAAC,CAAC,CAAC,UAAU,CAAC,kBAAkB,CAAC,CAAC,CAAC;AACrE,CAAC"}

package/lib/dist/installer/index.d.ts

@@ -11,8 +11,8 @@
  * is the non-interactive entry point used by the `--target` /
  * `--print-config` CLI flags.
  */
-import type { AgentTarget, Location, TargetId, WriteResult } from './targets/types';
-export { writeMcpConfig, writePermissions, writeClaudeMd, hasMcpConfig, hasPermissions, hasClaudeMdSection, } from './config-writer';
+import type { AgentTarget, Location, TargetId } from './targets/types';
+export { writeMcpConfig, writePermissions, hasMcpConfig, hasPermissions, } from './config-writer';
 export type { InstallLocation } from './config-writer';
 export interface RunInstallerOptions {
     /** Comma-separated target list, or `auto` / `all` / `none`. */
@@ -85,23 +85,6 @@ export declare function uninstallTargets(targets: readonly AgentTarget[], locati
  * uninit` owns.
  */
 export declare function runUninstaller(opts: RunUninstallerOptions): Promise<void>;
-/**
- * For every target that has a global config and exposes
- * `wireProjectSurfaces`, write its project-local surfaces (e.g.
- * Cursor's `.cursor/rules/codegraph.mdc`). Idempotent — runs
- * silently when there's nothing to write.
- *
- * Called by `codegraph init` so that a user who ran
- * `codegraph install` once globally doesn't have to re-run it per
- * project to get full agent support.
- *
- * Returns the list of `(target, file)` pairs that were created or
- * updated — caller decides how to surface them.
- */
-export declare function wireProjectSurfacesForGlobalAgents(): Array<{
-    target: AgentTarget;
-    file: WriteResult['files'][number];
-}>;
 /**
  * When the live file watcher will be disabled for this project (e.g. WSL2
  * /mnt drives, or CODEGRAPH_NO_WATCH), the index would silently go stale.

package/lib/dist/installer/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/installer/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAWH,OAAO,KAAK,EAAE,WAAW,EAAE,QAAQ,EAAE,QAAQ,EAAE,WAAW,EAAE,MAAM,iBAAiB,CAAC;AAWpF,OAAO,EACL,cAAc,EACd,gBAAgB,EAChB,aAAa,EACb,YAAY,EACZ,cAAc,EACd,kBAAkB,GACnB,MAAM,iBAAiB,CAAC;AACzB,YAAY,EAAE,eAAe,EAAE,MAAM,iBAAiB,CAAC;AAsBvD,MAAM,WAAW,mBAAmB;IAClC,+DAA+D;IAC/D,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,yDAAyD;IACzD,QAAQ,CAAC,EAAE,QAAQ,CAAC;IACpB,2DAA2D;IAC3D,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB;;;OAGG;IACH,GAAG,CAAC,EAAE,OAAO,CAAC;CACf;AAED;;;;GAIG;AACH,wBAAsB,YAAY,IAAI,OAAO,CAAC,IAAI,CAAC,CAElD;AAED,wBAAsB,uBAAuB,CAAC,IAAI,EAAE,mBAAmB,GAAG,OAAO,CAAC,IAAI,CAAC,CAkItF;AAED,MAAM,WAAW,qBAAqB;IACpC;;;;;OAKG;IACH,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,yDAAyD;IACzD,QAAQ,CAAC,EAAE,QAAQ,CAAC;IACpB,gEAAgE;IAChE,GAAG,CAAC,EAAE,OAAO,CAAC;CACf;AAED,MAAM,MAAM,eAAe,GAAG,SAAS,GAAG,gBAAgB,GAAG,aAAa,CAAC;AAE3E;;;;;;GAMG;AACH,MAAM,WAAW,eAAe;IAC9B,EAAE,EAAE,QAAQ,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,MAAM,EAAE,eAAe,CAAC;IACxB,wEAAwE;IACxE,YAAY,EAAE,MAAM,EAAE,CAAC;IACvB,2DAA2D;IAC3D,KAAK,EAAE,MAAM,EAAE,CAAC;CACjB;AAED;;;;;;;;GAQG;AACH,wBAAgB,gBAAgB,CAC9B,OAAO,EAAE,SAAS,WAAW,EAAE,EAC/B,QAAQ,EAAE,QAAQ,GACjB,eAAe,EAAE,CAwBnB;AAED;;;;;;;;;GASG;AACH,wBAAsB,cAAc,CAAC,IAAI,EAAE,qBAAqB,GAAG,OAAO,CAAC,IAAI,CAAC,CA8E/E;AAED;;;;;;;;;;;;GAYG;AACH,wBAAgB,kCAAkC,IAAI,KAAK,CAAC;IAC1D,MAAM,EAAE,WAAW,CAAC;IACpB,IAAI,EAAE,WAAW,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,CAAC;CACpC,CAAC,CAcD;AAoHD;;;;;;;;GAQG;AACH,wBAAsB,kBAAkB,CACtC,KAAK,EAAE,cAAc,gBAAgB,CAAC,EACtC,WAAW,EAAE,MAAM,EACnB,IAAI,GAAE;IAAE,GAAG,CAAC,EAAE,OAAO,CAAA;CAAO,GAC3B,OAAO,CAAC,IAAI,CAAC,CAwDf"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/installer/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAWH,OAAO,KAAK,EAAE,WAAW,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,iBAAiB,CAAC;AAWvE,OAAO,EACL,cAAc,EACd,gBAAgB,EAChB,YAAY,EACZ,cAAc,GACf,MAAM,iBAAiB,CAAC;AACzB,YAAY,EAAE,eAAe,EAAE,MAAM,iBAAiB,CAAC;AAsBvD,MAAM,WAAW,mBAAmB;IAClC,+DAA+D;IAC/D,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,yDAAyD;IACzD,QAAQ,CAAC,EAAE,QAAQ,CAAC;IACpB,2DAA2D;IAC3D,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB;;;OAGG;IACH,GAAG,CAAC,EAAE,OAAO,CAAC;CACf;AAED;;;;GAIG;AACH,wBAAsB,YAAY,IAAI,OAAO,CAAC,IAAI,CAAC,CAElD;AAED,wBAAsB,uBAAuB,CAAC,IAAI,EAAE,mBAAmB,GAAG,OAAO,CAAC,IAAI,CAAC,CAoItF;AAED,MAAM,WAAW,qBAAqB;IACpC;;;;;OAKG;IACH,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,yDAAyD;IACzD,QAAQ,CAAC,EAAE,QAAQ,CAAC;IACpB,gEAAgE;IAChE,GAAG,CAAC,EAAE,OAAO,CAAC;CACf;AAED,MAAM,MAAM,eAAe,GAAG,SAAS,GAAG,gBAAgB,GAAG,aAAa,CAAC;AAE3E;;;;;;GAMG;AACH,MAAM,WAAW,eAAe;IAC9B,EAAE,EAAE,QAAQ,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,MAAM,EAAE,eAAe,CAAC;IACxB,wEAAwE;IACxE,YAAY,EAAE,MAAM,EAAE,CAAC;IACvB,2DAA2D;IAC3D,KAAK,EAAE,MAAM,EAAE,CAAC;CACjB;AAED;;;;;;;;GAQG;AACH,wBAAgB,gBAAgB,CAC9B,OAAO,EAAE,SAAS,WAAW,EAAE,EAC/B,QAAQ,EAAE,QAAQ,GACjB,eAAe,EAAE,CAwBnB;AAED;;;;;;;;;GASG;AACH,wBAAsB,cAAc,CAAC,IAAI,EAAE,qBAAqB,GAAG,OAAO,CAAC,IAAI,CAAC,CA8E/E;AAoHD;;;;;;;;GAQG;AACH,wBAAsB,kBAAkB,CACtC,KAAK,EAAE,cAAc,gBAAgB,CAAC,EACtC,WAAW,EAAE,MAAM,EACnB,IAAI,GAAE;IAAE,GAAG,CAAC,EAAE,OAAO,CAAA;CAAO,GAC3B,OAAO,CAAC,IAAI,CAAC,CAwDf"}

package/lib/dist/installer/index.js

@@ -46,12 +46,11 @@ var __importStar = (this && this.__importStar) || (function () {
     };
 })();
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.hasClaudeMdSection = exports.hasPermissions = exports.hasMcpConfig = exports.writeClaudeMd = exports.writePermissions = exports.writeMcpConfig = void 0;
+exports.hasPermissions = exports.hasMcpConfig = exports.writePermissions = exports.writeMcpConfig = void 0;
 exports.runInstaller = runInstaller;
 exports.runInstallerWithOptions = runInstallerWithOptions;
 exports.uninstallTargets = uninstallTargets;
 exports.runUninstaller = runUninstaller;
-exports.wireProjectSurfacesForGlobalAgents = wireProjectSurfacesForGlobalAgents;
 exports.offerWatchFallback = offerWatchFallback;
 const child_process_1 = require("child_process");
 const path = __importStar(require("path"));
@@ -69,10 +68,8 @@ const git_hooks_1 = require("../sync/git-hooks");
 var config_writer_1 = require("./config-writer");
 Object.defineProperty(exports, "writeMcpConfig", { enumerable: true, get: function () { return config_writer_1.writeMcpConfig; } });
 Object.defineProperty(exports, "writePermissions", { enumerable: true, get: function () { return config_writer_1.writePermissions; } });
-Object.defineProperty(exports, "writeClaudeMd", { enumerable: true, get: function () { return config_writer_1.writeClaudeMd; } });
 Object.defineProperty(exports, "hasMcpConfig", { enumerable: true, get: function () { return config_writer_1.hasMcpConfig; } });
 Object.defineProperty(exports, "hasPermissions", { enumerable: true, get: function () { return config_writer_1.hasPermissions; } });
-Object.defineProperty(exports, "hasClaudeMdSection", { enumerable: true, get: function () { return config_writer_1.hasClaudeMdSection; } });
 // Dynamic import helper — tsc compiles import() to require() in CJS mode,
 // which fails for ESM-only packages. This bypasses the transformation.
 // eslint-disable-next-line @typescript-eslint/no-implied-eval
@@ -128,7 +125,7 @@ async function runInstallerWithOptions(opts) {
             const s = clack.spinner();
             s.start('Installing codegraph CLI...');
             try {
-                (0, child_process_1.execSync)('npm install -g @colbymchenry/codegraph', { stdio: 'pipe' });
+                (0, child_process_1.execSync)('npm install -g @colbymchenry/codegraph', { stdio: 'pipe', windowsHide: true });
                 s.stop('Installed codegraph CLI on PATH');
             }
             catch {
@@ -206,7 +203,9 @@ async function runInstallerWithOptions(opts) {
         for (const file of result.files) {
             const verb = file.action === 'unchanged'
                 ? 'Unchanged'
-                : file.action === 'created' ? 'Created' : 'Updated';
+                : file.action === 'created' ? 'Created'
+                    : file.action === 'removed' ? 'Removed'
+                        : 'Updated';
             clack.log.success(`${target.displayName}: ${verb} ${tildify(file.path)}`);
         }
         for (const note of result.notes ?? []) {
@@ -344,36 +343,6 @@ async function runUninstaller(opts) {
         clack.outro(`CodeGraph was not configured in any ${location} agent — nothing to remove.`);
     }
 }
-/**
- * For every target that has a global config and exposes
- * `wireProjectSurfaces`, write its project-local surfaces (e.g.
- * Cursor's `.cursor/rules/codegraph.mdc`). Idempotent — runs
- * silently when there's nothing to write.
- *
- * Called by `codegraph init` so that a user who ran
- * `codegraph install` once globally doesn't have to re-run it per
- * project to get full agent support.
- *
- * Returns the list of `(target, file)` pairs that were created or
- * updated — caller decides how to surface them.
- */
-function wireProjectSurfacesForGlobalAgents() {
-    const written = [];
-    for (const target of registry_1.ALL_TARGETS) {
-        if (typeof target.wireProjectSurfaces !== 'function')
-            continue;
-        const detection = target.detect('global');
-        if (!detection.alreadyConfigured)
-            continue;
-        const result = target.wireProjectSurfaces();
-        for (const file of result.files) {
-            if (file.action === 'created' || file.action === 'updated') {
-                written.push({ target, file });
-            }
-        }
-    }
-    return written;
-}
 /**
  * Replace home-directory prefix in a path with `~/` for cleaner log
  * lines. Pure cosmetic.

package/lib/dist/installer/index.js.map

@@ -1 +1 @@
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package/lib/dist/installer/instructions-template.d.ts

@@ -1,28 +1,18 @@
 /**
- * Agent-instructions template — the markdown body each agent target
- * writes into its conventional instructions file (CLAUDE.md /
- * AGENTS.md / codegraph.mdc / etc.).
+ * Marker constants for the legacy agent-instructions block.
  *
- * The body content is identical across agents because the codegraph
- * usage advice is agent-agnostic — only the destination filename and
- * any optional frontmatter (Cursor `.mdc`) varies per target.
+ * Codegraph used to write a `## CodeGraph` usage guide into each
+ * agent's instructions file (CLAUDE.md / AGENTS.md / GEMINI.md /
+ * codegraph.mdc / Kiro steering doc). That duplicated the guidance the
+ * MCP server already emits in its `initialize` response — every agent
+ * read the same playbook twice each turn (issue #529). The installer no
+ * longer writes an instructions file; the MCP server instructions in
+ * `mcp/server-instructions.ts` are the single source of truth.
  *
- * The legacy `claude-md-template.ts` re-exports these names for
- * backwards compatibility with downstream importers.
+ * These markers are retained so install (self-heal on upgrade) and
+ * uninstall can find and strip the block a previous install wrote.
  */
-/** Markers used by the marker-based section replacement. */
+/** Markers used by the marker-based section removal. */
 export declare const CODEGRAPH_SECTION_START = "<!-- CODEGRAPH_START -->";
 export declare const CODEGRAPH_SECTION_END = "<!-- CODEGRAPH_END -->";
-/**
- * The full marker-delimited block written into each agent's
- * instructions file. Includes the start/end markers so the section
- * can be detected and replaced on re-install.
- */
-export declare const INSTRUCTIONS_TEMPLATE = "<!-- CODEGRAPH_START -->\n## CodeGraph\n\nThis project has a CodeGraph MCP server (`codegraph_*` tools) configured. CodeGraph is a tree-sitter-parsed knowledge graph of every symbol, edge, and file. Reads are sub-millisecond and return structural information grep cannot.\n\n### When to prefer codegraph over native search\n\nUse codegraph for **structural** questions \u2014 what calls what, what would break, where is X defined, what is X's signature. Use native grep/read only for **literal text** queries (string contents, comments, log messages) or after you already have a specific file open.\n\n| Question | Tool |\n|---|---|\n| \"Where is X defined?\" / \"Find symbol named X\" | `codegraph_search` |\n| \"What calls function Y?\" | `codegraph_callers` |\n| \"What does Y call?\" | `codegraph_callees` |\n| \"How does X reach/become Y? / trace the flow from X to Y\" | `codegraph_trace` (one call = the whole path, incl. callback/React/JSX dynamic hops) |\n| \"What would break if I changed Z?\" | `codegraph_impact` |\n| \"Show me Y's signature / source / docstring\" | `codegraph_node` |\n| \"Give me focused context for a task/area\" | `codegraph_context` |\n| \"See several related symbols' source at once\" | `codegraph_explore` |\n| \"What files exist under path/\" | `codegraph_files` |\n| \"Is the index healthy?\" | `codegraph_status` |\n\n### Rules of thumb\n\n- **Answer directly \u2014 don't delegate exploration.** For \"how does X work\" / architecture questions, answer with 2-3 codegraph calls: `codegraph_context` first, then ONE `codegraph_explore` for the source of the symbols it surfaces. For a specific **flow** (\"how does X reach Y\") start with `codegraph_trace` from\u2192to \u2014 one call returns the whole path with dynamic hops bridged \u2014 then ONE `codegraph_explore` for the bodies; don't rebuild the path with `codegraph_search` + `codegraph_callers`. Codegraph IS the pre-built index, so spawning a separate file-reading sub-task/agent \u2014 or running a grep + read loop \u2014 repeats work codegraph already did and costs more for the same answer.\n- **Trust codegraph results.** They come from a full AST parse. Do NOT re-verify them with grep \u2014 that's slower, less accurate, and wastes context.\n- **Don't grep first** when looking up a symbol by name. `codegraph_search` is faster and returns kind + location + signature in one call.\n- **Don't chain `codegraph_search` + `codegraph_node`** when you just want context \u2014 `codegraph_context` is one call.\n- **Don't loop `codegraph_node` over many symbols** \u2014 one `codegraph_explore` call returns several symbols' source grouped in a single capped call, while each separate node/Read call re-reads the whole context and costs far more.\n- **Index lag \u2014 check the staleness banner, don't guess a wait.** When a codegraph response starts with \"\u26A0\uFE0F Some files referenced below were edited since the last index sync\u2026\", the listed files are pending re-index \u2014 Read those specific files for accurate content. Files NOT in that banner are fresh and codegraph is authoritative for them. `codegraph_status` also lists pending files under \"Pending sync\".\n\n### If `.codegraph/` doesn't exist\n\nThe MCP server returns \"not initialized.\" Ask the user: *\"I notice this project doesn't have CodeGraph initialized. Want me to run `codegraph init -i` to build the index?\"*\n<!-- CODEGRAPH_END -->";
-/**
- * Backwards-compat alias. Existing downstream code may import
- * `CLAUDE_MD_TEMPLATE` from this module via the re-export shim in
- * `claude-md-template.ts`.
- */
-export declare const CLAUDE_MD_TEMPLATE = "<!-- CODEGRAPH_START -->\n## CodeGraph\n\nThis project has a CodeGraph MCP server (`codegraph_*` tools) configured. CodeGraph is a tree-sitter-parsed knowledge graph of every symbol, edge, and file. Reads are sub-millisecond and return structural information grep cannot.\n\n### When to prefer codegraph over native search\n\nUse codegraph for **structural** questions \u2014 what calls what, what would break, where is X defined, what is X's signature. Use native grep/read only for **literal text** queries (string contents, comments, log messages) or after you already have a specific file open.\n\n| Question | Tool |\n|---|---|\n| \"Where is X defined?\" / \"Find symbol named X\" | `codegraph_search` |\n| \"What calls function Y?\" | `codegraph_callers` |\n| \"What does Y call?\" | `codegraph_callees` |\n| \"How does X reach/become Y? / trace the flow from X to Y\" | `codegraph_trace` (one call = the whole path, incl. callback/React/JSX dynamic hops) |\n| \"What would break if I changed Z?\" | `codegraph_impact` |\n| \"Show me Y's signature / source / docstring\" | `codegraph_node` |\n| \"Give me focused context for a task/area\" | `codegraph_context` |\n| \"See several related symbols' source at once\" | `codegraph_explore` |\n| \"What files exist under path/\" | `codegraph_files` |\n| \"Is the index healthy?\" | `codegraph_status` |\n\n### Rules of thumb\n\n- **Answer directly \u2014 don't delegate exploration.** For \"how does X work\" / architecture questions, answer with 2-3 codegraph calls: `codegraph_context` first, then ONE `codegraph_explore` for the source of the symbols it surfaces. For a specific **flow** (\"how does X reach Y\") start with `codegraph_trace` from\u2192to \u2014 one call returns the whole path with dynamic hops bridged \u2014 then ONE `codegraph_explore` for the bodies; don't rebuild the path with `codegraph_search` + `codegraph_callers`. Codegraph IS the pre-built index, so spawning a separate file-reading sub-task/agent \u2014 or running a grep + read loop \u2014 repeats work codegraph already did and costs more for the same answer.\n- **Trust codegraph results.** They come from a full AST parse. Do NOT re-verify them with grep \u2014 that's slower, less accurate, and wastes context.\n- **Don't grep first** when looking up a symbol by name. `codegraph_search` is faster and returns kind + location + signature in one call.\n- **Don't chain `codegraph_search` + `codegraph_node`** when you just want context \u2014 `codegraph_context` is one call.\n- **Don't loop `codegraph_node` over many symbols** \u2014 one `codegraph_explore` call returns several symbols' source grouped in a single capped call, while each separate node/Read call re-reads the whole context and costs far more.\n- **Index lag \u2014 check the staleness banner, don't guess a wait.** When a codegraph response starts with \"\u26A0\uFE0F Some files referenced below were edited since the last index sync\u2026\", the listed files are pending re-index \u2014 Read those specific files for accurate content. Files NOT in that banner are fresh and codegraph is authoritative for them. `codegraph_status` also lists pending files under \"Pending sync\".\n\n### If `.codegraph/` doesn't exist\n\nThe MCP server returns \"not initialized.\" Ask the user: *\"I notice this project doesn't have CodeGraph initialized. Want me to run `codegraph init -i` to build the index?\"*\n<!-- CODEGRAPH_END -->";
 //# sourceMappingURL=instructions-template.d.ts.map

package/lib/dist/installer/instructions-template.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"instructions-template.d.ts","sourceRoot":"","sources":["../../src/installer/instructions-template.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAEH,wDAAwD;AACxD,eAAO,MAAM,uBAAuB,6BAA6B,CAAC;AAClE,eAAO,MAAM,qBAAqB,2BAA2B,CAAC"}

package/lib/dist/installer/instructions-template.js

@@ -1,65 +1,21 @@
 "use strict";
 /**
- * Agent-instructions template — the markdown body each agent target
- * writes into its conventional instructions file (CLAUDE.md /
- * AGENTS.md / codegraph.mdc / etc.).
+ * Marker constants for the legacy agent-instructions block.
  *
- * The body content is identical across agents because the codegraph
- * usage advice is agent-agnostic — only the destination filename and
- * any optional frontmatter (Cursor `.mdc`) varies per target.
+ * Codegraph used to write a `## CodeGraph` usage guide into each
+ * agent's instructions file (CLAUDE.md / AGENTS.md / GEMINI.md /
+ * codegraph.mdc / Kiro steering doc). That duplicated the guidance the
+ * MCP server already emits in its `initialize` response — every agent
+ * read the same playbook twice each turn (issue #529). The installer no
+ * longer writes an instructions file; the MCP server instructions in
+ * `mcp/server-instructions.ts` are the single source of truth.
  *
- * The legacy `claude-md-template.ts` re-exports these names for
- * backwards compatibility with downstream importers.
+ * These markers are retained so install (self-heal on upgrade) and
+ * uninstall can find and strip the block a previous install wrote.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.CLAUDE_MD_TEMPLATE = exports.INSTRUCTIONS_TEMPLATE = exports.CODEGRAPH_SECTION_END = exports.CODEGRAPH_SECTION_START = void 0;
-/** Markers used by the marker-based section replacement. */
+exports.CODEGRAPH_SECTION_END = exports.CODEGRAPH_SECTION_START = void 0;
+/** Markers used by the marker-based section removal. */
 exports.CODEGRAPH_SECTION_START = '<!-- CODEGRAPH_START -->';
 exports.CODEGRAPH_SECTION_END = '<!-- CODEGRAPH_END -->';
-/**
- * The full marker-delimited block written into each agent's
- * instructions file. Includes the start/end markers so the section
- * can be detected and replaced on re-install.
- */
-exports.INSTRUCTIONS_TEMPLATE = `${exports.CODEGRAPH_SECTION_START}
-## CodeGraph
-
-This project has a CodeGraph MCP server (\`codegraph_*\` tools) configured. CodeGraph is a tree-sitter-parsed knowledge graph of every symbol, edge, and file. Reads are sub-millisecond and return structural information grep cannot.
-
-### When to prefer codegraph over native search
-
-Use codegraph for **structural** questions — what calls what, what would break, where is X defined, what is X's signature. Use native grep/read only for **literal text** queries (string contents, comments, log messages) or after you already have a specific file open.
-
-| Question | Tool |
-|---|---|
-| "Where is X defined?" / "Find symbol named X" | \`codegraph_search\` |
-| "What calls function Y?" | \`codegraph_callers\` |
-| "What does Y call?" | \`codegraph_callees\` |
-| "How does X reach/become Y? / trace the flow from X to Y" | \`codegraph_trace\` (one call = the whole path, incl. callback/React/JSX dynamic hops) |
-| "What would break if I changed Z?" | \`codegraph_impact\` |
-| "Show me Y's signature / source / docstring" | \`codegraph_node\` |
-| "Give me focused context for a task/area" | \`codegraph_context\` |
-| "See several related symbols' source at once" | \`codegraph_explore\` |
-| "What files exist under path/" | \`codegraph_files\` |
-| "Is the index healthy?" | \`codegraph_status\` |
-
-### Rules of thumb
-
-- **Answer directly — don't delegate exploration.** For "how does X work" / architecture questions, answer with 2-3 codegraph calls: \`codegraph_context\` first, then ONE \`codegraph_explore\` for the source of the symbols it surfaces. For a specific **flow** ("how does X reach Y") start with \`codegraph_trace\` from→to — one call returns the whole path with dynamic hops bridged — then ONE \`codegraph_explore\` for the bodies; don't rebuild the path with \`codegraph_search\` + \`codegraph_callers\`. Codegraph IS the pre-built index, so spawning a separate file-reading sub-task/agent — or running a grep + read loop — repeats work codegraph already did and costs more for the same answer.
-- **Trust codegraph results.** They come from a full AST parse. Do NOT re-verify them with grep — that's slower, less accurate, and wastes context.
-- **Don't grep first** when looking up a symbol by name. \`codegraph_search\` is faster and returns kind + location + signature in one call.
-- **Don't chain \`codegraph_search\` + \`codegraph_node\`** when you just want context — \`codegraph_context\` is one call.
-- **Don't loop \`codegraph_node\` over many symbols** — one \`codegraph_explore\` call returns several symbols' source grouped in a single capped call, while each separate node/Read call re-reads the whole context and costs far more.
-- **Index lag — check the staleness banner, don't guess a wait.** When a codegraph response starts with "⚠️ Some files referenced below were edited since the last index sync…", the listed files are pending re-index — Read those specific files for accurate content. Files NOT in that banner are fresh and codegraph is authoritative for them. \`codegraph_status\` also lists pending files under "Pending sync".
-
-### If \`.codegraph/\` doesn't exist
-
-The MCP server returns "not initialized." Ask the user: *"I notice this project doesn't have CodeGraph initialized. Want me to run \`codegraph init -i\` to build the index?"*
-${exports.CODEGRAPH_SECTION_END}`;
-/**
- * Backwards-compat alias. Existing downstream code may import
- * `CLAUDE_MD_TEMPLATE` from this module via the re-export shim in
- * `claude-md-template.ts`.
- */
-exports.CLAUDE_MD_TEMPLATE = exports.INSTRUCTIONS_TEMPLATE;
 //# sourceMappingURL=instructions-template.js.map

package/lib/dist/installer/instructions-template.js.map

@@ -1 +1 @@
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+{"version":3,"file":"instructions-template.js","sourceRoot":"","sources":["../../src/installer/instructions-template.ts"],"names":[],"mappings":";AAAA;;;;;;;;;;;;;GAaG;;;AAEH,wDAAwD;AAC3C,QAAA,uBAAuB,GAAG,0BAA0B,CAAC;AACrD,QAAA,qBAAqB,GAAG,wBAAwB,CAAC"}

package/lib/dist/installer/targets/antigravity.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"antigravity.d.ts","sourceRoot":"","sources":["../../../src/installer/targets/antigravity.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAqDG;AAMH,OAAO,EACL,WAAW,EAKZ,MAAM,SAAS,CAAC;AA+NjB,eAAO,MAAM,iBAAiB,EAAE,WAAqC,CAAC"}

package/lib/dist/installer/targets/antigravity.js

@@ -148,6 +148,7 @@ function resolveCodegraphCommand() {
             encoding: 'utf-8',
             stdio: ['ignore', 'pipe', 'ignore'],
             shell: '/bin/bash',
+            windowsHide: true,
         }).trim();
         if (resolved && fs.existsSync(resolved))
             return resolved;

package/lib/dist/installer/targets/antigravity.js.map

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package/lib/dist/installer/targets/claude.d.ts

@@ -42,6 +42,15 @@ export declare function writeMcpEntry(loc: Location): WriteResult['files'][numbe
  */
 export declare function cleanupLegacyHooks(loc: Location): WriteResult['files'][number];
 export declare function writePermissionsEntry(loc: Location): WriteResult['files'][number];
-export declare function writeInstructionsEntry(loc: Location): WriteResult['files'][number];
+/**
+ * Strip the marker-delimited CodeGraph block from CLAUDE.md if a prior
+ * install wrote one. Codegraph no longer maintains an instructions file
+ * (issue #529) — the MCP server's `initialize` instructions are the
+ * single source of truth — so both install (self-heal on upgrade) and
+ * uninstall call this. `removeMarkedSection` returns `not-found`/`kept`
+ * when there's nothing to strip; the install caller drops those from
+ * the report so a fresh install stays quiet.
+ */
+export declare function removeInstructionsEntry(loc: Location): WriteResult['files'][number];
 export declare const claudeTarget: AgentTarget;
 //# sourceMappingURL=claude.d.ts.map

package/lib/dist/installer/targets/claude.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"claude.d.ts","sourceRoot":"","sources":["../../../src/installer/targets/claude.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;GAiBG;AAKH,OAAO,EACL,WAAW,EAGX,QAAQ,EACR,WAAW,EACZ,MAAM,SAAS,CAAC;AAoLjB;;;;;;GAMG;AACH,wBAAgB,aAAa,CAAC,GAAG,EAAE,QAAQ,GAAG,WAAW,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,CAsBzE;AA6CD;;;;;;;;;;;;;;GAcG;AACH,wBAAgB,kBAAkB,CAAC,GAAG,EAAE,QAAQ,GAAG,WAAW,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,CA0C9E;AAED,wBAAgB,qBAAqB,CAAC,GAAG,EAAE,QAAQ,GAAG,WAAW,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,CAoBjF;AAED;;;;;;;;GAQG;AACH,wBAAgB,uBAAuB,CAAC,GAAG,EAAE,QAAQ,GAAG,WAAW,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,CAInF;AAED,eAAO,MAAM,YAAY,EAAE,WAAoC,CAAC"}