@colbymchenry/codegraph-darwin-x64 0.9.3 → 0.9.5

package/lib/dist/mcp/engine.js

@@ -0,0 +1,291 @@
+"use strict";
+/**
+ * MCP shared engine — the heavyweight, *shared* state for an MCP server:
+ * the project's {@link CodeGraph} instance, file watcher, and the
+ * {@link ToolHandler} cache for cross-project queries.
+ *
+ * One engine, many sessions:
+ * - direct mode (single stdio session) instantiates one engine + one session;
+ * - daemon mode instantiates one engine and a new session per socket
+ *   connection. Every session reads from the same SQLite WAL and the same
+ *   inotify watch set — that's the entire point of issue #411.
+ */
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.MCPEngine = void 0;
+exports.parseDebounceEnv = parseDebounceEnv;
+const index_1 = __importStar(require("../index"));
+const sync_1 = require("../sync");
+const tools_1 = require("./tools");
+/**
+ * Shared MCP engine. Thread-safe in the sense that multiple sessions can
+ * call its methods concurrently — internally it serializes initialization
+ * through a single promise so multiple sessions racing each other on first
+ * connect never double-open the SQLite file.
+ */
+class MCPEngine {
+    cg = null;
+    toolHandler;
+    // Project root we resolved to. Null until `ensureInitialized` succeeds
+    // (or null forever if no .codegraph/ ever turned up — that's a valid
+    // state for the engine, since cross-project queries still work).
+    projectPath = null;
+    // Set on first `ensureInitialized` so subsequent sessions don't redo work.
+    initPromise = null;
+    watcherStarted = false;
+    opts;
+    closed = false;
+    constructor(opts = {}) {
+        this.opts = { watch: opts.watch ?? true };
+        this.toolHandler = new tools_1.ToolHandler(null);
+    }
+    /**
+     * Convenience for {@link MCPServer} compatibility: pre-seed an explicit
+     * project path (from the `--path` CLI flag) without yet opening it. This
+     * keeps the synchronous constructor cheap; the actual open happens on the
+     * first `ensureInitialized` call.
+     */
+    setProjectPathHint(projectPath) {
+        this.projectPath = projectPath;
+        this.toolHandler.setDefaultProjectHint(projectPath);
+    }
+    /** Project root that the engine resolved on first init (null if none). */
+    getProjectPath() {
+        return this.projectPath;
+    }
+    /** Shared ToolHandler — sessions delegate tool dispatch through this. */
+    getToolHandler() {
+        return this.toolHandler;
+    }
+    /** Whether the default project's CodeGraph is open. */
+    hasDefaultCodeGraph() {
+        return this.toolHandler.hasDefaultCodeGraph();
+    }
+    /**
+     * Walk up from `searchFrom` to find the nearest `.codegraph/` and open it.
+     * Idempotent: concurrent callers share one in-flight init; subsequent
+     * callers after success are no-ops.
+     *
+     * The original `MCPServer.tryInitializeDefault` carried the same retry-on-
+     * subsequent-tool-call semantics; we preserve them by NOT throwing when the
+     * search misses (just leaves `cg` null so the next call can retry).
+     */
+    async ensureInitialized(searchFrom) {
+        if (this.closed)
+            return;
+        if (this.toolHandler.hasDefaultCodeGraph())
+            return;
+        if (this.initPromise) {
+            try {
+                await this.initPromise;
+            }
+            catch { /* let caller retry */ }
+            return;
+        }
+        this.initPromise = this.doInitialize(searchFrom).finally(() => {
+            this.initPromise = null;
+        });
+        try {
+            await this.initPromise;
+        }
+        catch {
+            // Init errors are logged inside `doInitialize`; falling through here
+            // matches MCPServer's previous "retry on next tool call" behavior.
+        }
+    }
+    /**
+     * Synchronous last-resort init used by the per-session retry loop when the
+     * background `ensureInitialized` already finished (or failed) and we need
+     * to pick up a project that appeared *after* the engine started.
+     */
+    retryInitializeSync(searchFrom) {
+        if (this.closed)
+            return;
+        if (this.toolHandler.hasDefaultCodeGraph())
+            return;
+        this.toolHandler.setDefaultProjectHint(searchFrom);
+        const resolvedRoot = (0, index_1.findNearestCodeGraphRoot)(searchFrom);
+        if (!resolvedRoot)
+            return;
+        try {
+            // Close any previously failed instance to avoid leaking resources.
+            if (this.cg) {
+                try {
+                    this.cg.close();
+                }
+                catch { /* ignore */ }
+                this.cg = null;
+            }
+            this.cg = index_1.default.openSync(resolvedRoot);
+            this.projectPath = resolvedRoot;
+            this.toolHandler.setDefaultCodeGraph(this.cg);
+            this.startWatching();
+            this.catchUpSync();
+        }
+        catch {
+            // Still failing — caller will try again on the next tool call.
+        }
+    }
+    /**
+     * Close everything. Used on graceful daemon shutdown (SIGTERM/idle timeout)
+     * and on direct-mode stop. Idempotent.
+     */
+    stop() {
+        if (this.closed)
+            return;
+        this.closed = true;
+        this.toolHandler.closeAll();
+        if (this.cg) {
+            try {
+                this.cg.close();
+            }
+            catch { /* ignore */ }
+            this.cg = null;
+        }
+    }
+    async doInitialize(searchFrom) {
+        this.toolHandler.setDefaultProjectHint(searchFrom);
+        const resolvedRoot = (0, index_1.findNearestCodeGraphRoot)(searchFrom);
+        if (!resolvedRoot) {
+            // No .codegraph/ above searchFrom — that's not an error, sessions may
+            // still discover one later via roots/list.
+            this.projectPath = searchFrom;
+            return;
+        }
+        this.projectPath = resolvedRoot;
+        try {
+            this.cg = await index_1.default.open(resolvedRoot);
+            this.toolHandler.setDefaultCodeGraph(this.cg);
+            this.startWatching();
+            this.catchUpSync();
+        }
+        catch (err) {
+            const msg = err instanceof Error ? err.message : String(err);
+            process.stderr.write(`[CodeGraph MCP] Failed to open project at ${resolvedRoot}: ${msg}\n`);
+        }
+    }
+    /**
+     * Start file watching on the active CodeGraph instance. Idempotent — the
+     * watcher is per-engine, not per-session, which is why the daemon path
+     * collapses N inotify sets to one. The wording of the disabled-reason log
+     * exactly matches the prior in-tree implementation so log-driven dashboards
+     * keep working.
+     */
+    startWatching() {
+        if (!this.cg || this.watcherStarted || !this.opts.watch)
+            return;
+        const disabledReason = (0, sync_1.watchDisabledReason)(this.projectPath ?? process.cwd());
+        if (disabledReason) {
+            process.stderr.write(`[CodeGraph MCP] File watcher disabled — ${disabledReason}. ` +
+                `The graph will not auto-update; run \`codegraph sync\` (or install the git sync hooks via \`codegraph init\`) to refresh.\n`);
+            this.watcherStarted = true;
+            return;
+        }
+        // Optional override for the debounce window via env var (issue #403).
+        // Useful for workspaces with bursty writes (formatter-on-save chains,
+        // large generated outputs) where the 2s default fires too often. Clamped
+        // to [100ms, 60s]; out-of-range / non-numeric values fall back to the
+        // FileWatcher default. We log the active value so it's discoverable.
+        const debounceMs = parseDebounceEnv(process.env.CODEGRAPH_WATCH_DEBOUNCE_MS);
+        if (debounceMs !== undefined) {
+            process.stderr.write(`[CodeGraph MCP] File watcher debounce: ${debounceMs}ms (CODEGRAPH_WATCH_DEBOUNCE_MS)\n`);
+        }
+        const started = this.cg.watch({
+            debounceMs,
+            onSyncComplete: (result) => {
+                if (result.filesChanged > 0) {
+                    process.stderr.write(`[CodeGraph MCP] Auto-synced ${result.filesChanged} file(s) in ${result.durationMs}ms\n`);
+                }
+            },
+            onSyncError: (err) => {
+                process.stderr.write(`[CodeGraph MCP] Auto-sync error: ${err.message}\n`);
+            },
+        });
+        this.watcherStarted = true;
+        if (started) {
+            process.stderr.write('[CodeGraph MCP] File watcher active — graph will auto-sync on changes\n');
+        }
+        else {
+            process.stderr.write('[CodeGraph MCP] File watcher unavailable on this platform — run `codegraph sync` to refresh the graph after changes.\n');
+        }
+    }
+    /**
+     * Reconcile the index with the current filesystem once, right after open —
+     * catches edits, adds, deletes, and `git pull`/`checkout` changes made while
+     * no watcher was running. Background, never awaited.
+     */
+    catchUpSync() {
+        const cg = this.cg;
+        if (!cg)
+            return;
+        void cg
+            .sync()
+            .then((result) => {
+            const changed = result.filesAdded + result.filesModified + result.filesRemoved;
+            if (changed > 0) {
+                process.stderr.write(`[CodeGraph MCP] Caught up ${changed} file(s) changed since last run\n`);
+            }
+        })
+            .catch((err) => {
+            const msg = err instanceof Error ? err.message : String(err);
+            process.stderr.write(`[CodeGraph MCP] Catch-up sync failed: ${msg}\n`);
+        });
+    }
+}
+exports.MCPEngine = MCPEngine;
+/**
+ * Parse and clamp the CODEGRAPH_WATCH_DEBOUNCE_MS env override.
+ *
+ * Issue #403: workspaces with bursty writes (formatter-on-save, multi-file
+ * refactors) sometimes want a longer quiet window before sync. Returns
+ * `undefined` for unset / empty / non-numeric / out-of-range values so the
+ * FileWatcher default (2000ms) takes over — never throws.
+ *
+ * Clamp range: 100ms (faster would mean a sync per keystroke) to 60s (longer
+ * and the watcher feels broken). Out-of-range values are treated as "ignore
+ * this misconfiguration" rather than capped, since silently capping a 0 or
+ * a typoed value would mask a real config bug.
+ */
+function parseDebounceEnv(raw) {
+    if (!raw || !raw.trim())
+        return undefined;
+    const n = Number(raw);
+    if (!Number.isFinite(n) || !Number.isInteger(n))
+        return undefined;
+    if (n < 100 || n > 60000)
+        return undefined;
+    return n;
+}
+//# sourceMappingURL=engine.js.map

package/lib/dist/mcp/engine.js.map

@@ -0,0 +1 @@
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package/lib/dist/mcp/index.d.ts

@@ -13,82 +13,97 @@
  * const server = new MCPServer('/path/to/project');
  * await server.start();
  * ```
+ *
+ * Runtime modes (decided in {@link MCPServer.start}):
+ *
+ * - **Direct** — one process serves one MCP client over stdio. The pre-#411
+ *   behavior; used when the user opts out (`CODEGRAPH_NO_DAEMON=1`), no
+ *   `.codegraph/` is reachable, or the daemon machinery fails for any reason.
+ * - **Proxy** — what an MCP host actually talks to when sharing is on: a thin
+ *   stdio↔socket pipe to the shared daemon. The proxy carries the #277 PPID
+ *   watchdog, so a SIGKILL'd host reaps its proxy promptly. See {@link ./proxy.ts}.
+ * - **Daemon** — a *detached* background process (its own session/process
+ *   group) that serves N proxies over a Unix-domain socket / named pipe,
+ *   sharing one CodeGraph + watcher + SQLite handle. Spawned on demand; never a
+ *   child of any host, so it survives individual sessions and is reaped by
+ *   client-refcount + idle timeout. See {@link ./daemon.ts} and issue #411.
+ *
+ * The detached-daemon + always-proxy split is the fix for the review finding
+ * that the original in-process daemon (a) was the first host's child, so closing
+ * that terminal severed every other client, and (b) disabled the PPID watchdog,
+ * regressing #277 (orphaned daemons on host SIGKILL).
  */
 /**
  * MCP Server for CodeGraph
  *
  * Implements the Model Context Protocol to expose CodeGraph
  * functionality as tools that can be called by AI assistants.
+ *
+ * Backwards-compatible constructor and `start()` signature with the
+ * pre-issue-#411 implementation: callers continue to do
+ * `new MCPServer(path).start()`. Internally we now pick from direct / proxy /
+ * daemon at start time.
  */
 export declare class MCPServer {
-    private transport;
-    private cg;
-    private toolHandler;
     private projectPath;
-    private initPromise;
-    private clientSupportsRoots;
-    private rootsAttempted;
+    private session;
+    private engine;
+    private daemon;
+    private ppidWatchdog;
+    private originalPpid;
+    private hostPpid;
+    private stopped;
+    private mode;
     constructor(projectPath?: string);
     /**
-     * Start the MCP server
-     *
-     * Note: CodeGraph initialization is deferred until the initialize request
-     * is received, which includes the rootUri from the client.
-     */
-    start(): Promise<void>;
-    /**
-     * Try to initialize CodeGraph for the default project.
+     * Start the MCP server.
      *
-     * Walks up parent directories to find the nearest .codegraph/ folder,
-     * similar to how git finds .git/ directories.
+     * Decision order:
+     *   1. `CODEGRAPH_NO_DAEMON=1` → direct mode (unchanged pre-#411 behavior).
+     *   2. `CODEGRAPH_DAEMON_INTERNAL=1` → we ARE the detached daemon; listen.
+     *   3. No `.codegraph/` reachable → direct mode (the daemon's lockfile and
+     *      socket both live under `.codegraph/`).
+     *   4. Otherwise connect to (or spawn) the shared daemon and proxy to it.
      *
-     * If initialization fails, the error is recorded but the server continues
-     * to work — cross-project queries and retries on subsequent tool calls
-     * are still possible.
+     * On any unexpected failure in step 4 we transparently fall back to direct
+     * mode — a misbehaving daemon must never block a session from starting.
      */
-    private tryInitializeDefault;
-    /**
-     * Retry initialization of the default project if it previously failed.
-     * Called lazily on tool calls that need the default project.
-     * Re-walks parent directories each time so it picks up projects
-     * initialized after the MCP server started.
-     *
-     * Awaits any in-flight background init (kicked off by handleInitialize) so
-     * we never open the SQLite file twice concurrently.
-     */
-    private retryInitIfNeeded;
-    /**
-     * Resolve the project root via the MCP `roots/list` request and initialize
-     * from the first root the client reports. Falls back to the process cwd if
-     * the client returns no usable root or doesn't answer in time. See issue #196.
-     */
-    private initFromRoots;
-    /**
-     * Start file watching on the active CodeGraph instance.
-     * Logs sync activity to stderr for diagnostics.
-     */
-    private startWatching;
+    start(): Promise<void>;
     /**
-     * Stop the server
+     * Stop the server. In daemon mode this triggers graceful shutdown of every
+     * connected session; in direct mode it mirrors the pre-#411 behavior (close
+     * cg, exit). Proxy mode never routes through here — the proxy exits itself.
      */
     stop(): void;
+    /** Single-process stdio MCP session — the pre-issue-#411 code path. */
+    private startDirect;
     /**
-     * Handle incoming JSON-RPC messages
-     */
-    private handleMessage;
-    /**
-     * Handle initialize request
+     * Run as the detached shared daemon (process spawned with
+     * `CODEGRAPH_DAEMON_INTERNAL=1`). Arbitrate the O_EXCL lock, then either
+     * become the daemon (bind the socket, serve forever) or — if a live daemon
+     * already holds the lock — exit so we don't leak a redundant process.
+     *
+     * No PPID watchdog and no stdin handlers: the daemon is detached on purpose
+     * and reaps itself via client-refcount + idle timeout (see {@link Daemon}).
      */
-    private handleInitialize;
+    private startDaemonProcess;
     /**
-     * Handle tools/list request
+     * Become a proxy to the shared daemon, spawning the daemon first if none is
+     * reachable. Returns 'proxy' once the proxied session has run to completion
+     * (the host disconnected), or 'fallback' if the caller should run in-process.
      */
-    private handleToolsList;
+    private connectOrSpawnDaemon;
+    /** Standard SIGINT/SIGTERM handlers that route to our `stop()` (direct mode). */
+    private installSignalHandlers;
     /**
-     * Handle tools/call request
+     * PPID watchdog (#277) — direct mode only. Daemon mode is detached on purpose
+     * and reaps via idle timeout; proxy mode installs its own watchdog inside
+     * {@link runProxy}. So this only ever runs for an in-process direct session.
      */
-    private handleToolsCall;
+    private installPpidWatchdog;
 }
 export { StdioTransport } from './transport';
 export { tools, ToolHandler } from './tools';
+export { Daemon } from './daemon';
+export { CodeGraphPackageVersion } from './version';
 //# sourceMappingURL=index.d.ts.map

package/lib/dist/mcp/index.d.ts.map

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