@colbymchenry/codegraph-darwin-arm64 1.1.6 → 1.3.0

package/lib/dist/mcp/proxy.js.map

@@ -1 +1 @@
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package/lib/dist/mcp/startup-handshake.d.ts

@@ -0,0 +1,44 @@
+/**
+ * Never-initialized backstop for `serve --mcp` (#1185).
+ *
+ * Every real MCP host sends `initialize` immediately after spawning a server.
+ * A server that has received NO bytes at all for many minutes is not serving
+ * anyone — it is the residue of an abandoned launch: the host killed the
+ * launcher chain during startup (config probe, instant cancel, initialize
+ * timeout) but kept our stdio pipe fds open, so stdin never EOFs. If the kill
+ * landed before {@link ../mcp/early-ppid} could observe the real parent, the
+ * PPID watchdog is blind too (baseline `1`), and — pre-#1185 — the orphan
+ * lived until the HOST process exited, accumulating one ~30MB node process
+ * per occurrence.
+ *
+ * This backstop closes that last hole: arm a one-shot timer at serve start
+ * and disarm it on the first byte of client traffic. If the timer fires, the
+ * caller shuts the server down. The default is deliberately generous (15
+ * minutes) — hosts initialize within milliseconds, so the only processes this
+ * ever reaps are ones nobody is talking to. It never affects a session that
+ * spoke even once: after the first byte the timer is gone for good (a
+ * quiet-but-live session is the PPID watchdog's / stdin teardown's job).
+ *
+ * IMPORTANT (callers): attaching a `'data'` listener switches the stream into
+ * flowing mode. Arm this AFTER the real stdin consumer is attached, in the
+ * same synchronous block, so no early bytes are emitted while only our
+ * listener exists. The detached daemon must never arm this — its stdin is
+ * `'ignore'` and its lifecycle is refcount/idle-based.
+ *
+ * Tune with `CODEGRAPH_STARTUP_HANDSHAKE_TIMEOUT_MS`; `0` disables.
+ */
+/** Default wait for the first byte of MCP traffic before assuming orphaned. */
+export declare const DEFAULT_STARTUP_HANDSHAKE_TIMEOUT_MS = 900000;
+export declare const STARTUP_HANDSHAKE_TIMEOUT_ENV = "CODEGRAPH_STARTUP_HANDSHAKE_TIMEOUT_MS";
+/**
+ * Parse the timeout env override. Missing/invalid → default; `<= 0` → `0`
+ * (disabled), the same disable convention as `CODEGRAPH_PPID_POLL_MS`.
+ */
+export declare function parseStartupHandshakeTimeoutMs(raw: string | undefined): number;
+/**
+ * Arm the backstop. `onAbandoned` runs at most once, only if no `'data'` event
+ * arrives on `stream` within the timeout. Returns a disarm function (idempotent;
+ * also detaches the listener). `stream`/`timeoutMs` are injectable for tests.
+ */
+export declare function armStartupHandshakeTimeout(onAbandoned: () => void, stream?: NodeJS.ReadableStream, timeoutMs?: number): () => void;
+//# sourceMappingURL=startup-handshake.d.ts.map

package/lib/dist/mcp/startup-handshake.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"startup-handshake.d.ts","sourceRoot":"","sources":["../../src/mcp/startup-handshake.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA4BG;AAEH,+EAA+E;AAC/E,eAAO,MAAM,oCAAoC,SAAU,CAAC;AAE5D,eAAO,MAAM,6BAA6B,2CAA2C,CAAC;AAEtF;;;GAGG;AACH,wBAAgB,8BAA8B,CAAC,GAAG,EAAE,MAAM,GAAG,SAAS,GAAG,MAAM,CAM9E;AAED;;;;GAIG;AACH,wBAAgB,0BAA0B,CACxC,WAAW,EAAE,MAAM,IAAI,EACvB,MAAM,GAAE,MAAM,CAAC,cAA8B,EAC7C,SAAS,GAAE,MAAmF,GAC7F,MAAM,IAAI,CAcZ"}

package/lib/dist/mcp/startup-handshake.js

@@ -0,0 +1,73 @@
+"use strict";
+/**
+ * Never-initialized backstop for `serve --mcp` (#1185).
+ *
+ * Every real MCP host sends `initialize` immediately after spawning a server.
+ * A server that has received NO bytes at all for many minutes is not serving
+ * anyone — it is the residue of an abandoned launch: the host killed the
+ * launcher chain during startup (config probe, instant cancel, initialize
+ * timeout) but kept our stdio pipe fds open, so stdin never EOFs. If the kill
+ * landed before {@link ../mcp/early-ppid} could observe the real parent, the
+ * PPID watchdog is blind too (baseline `1`), and — pre-#1185 — the orphan
+ * lived until the HOST process exited, accumulating one ~30MB node process
+ * per occurrence.
+ *
+ * This backstop closes that last hole: arm a one-shot timer at serve start
+ * and disarm it on the first byte of client traffic. If the timer fires, the
+ * caller shuts the server down. The default is deliberately generous (15
+ * minutes) — hosts initialize within milliseconds, so the only processes this
+ * ever reaps are ones nobody is talking to. It never affects a session that
+ * spoke even once: after the first byte the timer is gone for good (a
+ * quiet-but-live session is the PPID watchdog's / stdin teardown's job).
+ *
+ * IMPORTANT (callers): attaching a `'data'` listener switches the stream into
+ * flowing mode. Arm this AFTER the real stdin consumer is attached, in the
+ * same synchronous block, so no early bytes are emitted while only our
+ * listener exists. The detached daemon must never arm this — its stdin is
+ * `'ignore'` and its lifecycle is refcount/idle-based.
+ *
+ * Tune with `CODEGRAPH_STARTUP_HANDSHAKE_TIMEOUT_MS`; `0` disables.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.STARTUP_HANDSHAKE_TIMEOUT_ENV = exports.DEFAULT_STARTUP_HANDSHAKE_TIMEOUT_MS = void 0;
+exports.parseStartupHandshakeTimeoutMs = parseStartupHandshakeTimeoutMs;
+exports.armStartupHandshakeTimeout = armStartupHandshakeTimeout;
+/** Default wait for the first byte of MCP traffic before assuming orphaned. */
+exports.DEFAULT_STARTUP_HANDSHAKE_TIMEOUT_MS = 900_000; // 15 min
+exports.STARTUP_HANDSHAKE_TIMEOUT_ENV = 'CODEGRAPH_STARTUP_HANDSHAKE_TIMEOUT_MS';
+/**
+ * Parse the timeout env override. Missing/invalid → default; `<= 0` → `0`
+ * (disabled), the same disable convention as `CODEGRAPH_PPID_POLL_MS`.
+ */
+function parseStartupHandshakeTimeoutMs(raw) {
+    if (raw === undefined || raw === '')
+        return exports.DEFAULT_STARTUP_HANDSHAKE_TIMEOUT_MS;
+    const parsed = Number(raw);
+    if (!Number.isFinite(parsed))
+        return exports.DEFAULT_STARTUP_HANDSHAKE_TIMEOUT_MS;
+    if (parsed <= 0)
+        return 0;
+    return Math.floor(parsed);
+}
+/**
+ * Arm the backstop. `onAbandoned` runs at most once, only if no `'data'` event
+ * arrives on `stream` within the timeout. Returns a disarm function (idempotent;
+ * also detaches the listener). `stream`/`timeoutMs` are injectable for tests.
+ */
+function armStartupHandshakeTimeout(onAbandoned, stream = process.stdin, timeoutMs = parseStartupHandshakeTimeoutMs(process.env[exports.STARTUP_HANDSHAKE_TIMEOUT_ENV])) {
+    if (timeoutMs <= 0)
+        return () => { };
+    const onFirstData = () => { clearTimeout(timer); };
+    const timer = setTimeout(() => {
+        stream.removeListener('data', onFirstData);
+        onAbandoned();
+    }, timeoutMs);
+    // Never let the backstop itself keep an otherwise-finished process alive.
+    timer.unref?.();
+    stream.once('data', onFirstData);
+    return () => {
+        stream.removeListener('data', onFirstData);
+        clearTimeout(timer);
+    };
+}
+//# sourceMappingURL=startup-handshake.js.map

package/lib/dist/mcp/startup-handshake.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"startup-handshake.js","sourceRoot":"","sources":["../../src/mcp/startup-handshake.ts"],"names":[],"mappings":";AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA4BG;;;AAWH,wEAMC;AAOD,gEAkBC;AAxCD,+EAA+E;AAClE,QAAA,oCAAoC,GAAG,OAAO,CAAC,CAAC,SAAS;AAEzD,QAAA,6BAA6B,GAAG,wCAAwC,CAAC;AAEtF;;;GAGG;AACH,SAAgB,8BAA8B,CAAC,GAAuB;IACpE,IAAI,GAAG,KAAK,SAAS,IAAI,GAAG,KAAK,EAAE;QAAE,OAAO,4CAAoC,CAAC;IACjF,MAAM,MAAM,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC;IAC3B,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,MAAM,CAAC;QAAE,OAAO,4CAAoC,CAAC;IAC1E,IAAI,MAAM,IAAI,CAAC;QAAE,OAAO,CAAC,CAAC;IAC1B,OAAO,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC;AAC5B,CAAC;AAED;;;;GAIG;AACH,SAAgB,0BAA0B,CACxC,WAAuB,EACvB,SAAgC,OAAO,CAAC,KAAK,EAC7C,YAAoB,8BAA8B,CAAC,OAAO,CAAC,GAAG,CAAC,qCAA6B,CAAC,CAAC;IAE9F,IAAI,SAAS,IAAI,CAAC;QAAE,OAAO,GAAG,EAAE,GAAkB,CAAC,CAAC;IACpD,MAAM,WAAW,GAAG,GAAS,EAAE,GAAG,YAAY,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;IACzD,MAAM,KAAK,GAAG,UAAU,CAAC,GAAG,EAAE;QAC5B,MAAM,CAAC,cAAc,CAAC,MAAM,EAAE,WAAW,CAAC,CAAC;QAC3C,WAAW,EAAE,CAAC;IAChB,CAAC,EAAE,SAAS,CAAC,CAAC;IACd,0EAA0E;IAC1E,KAAK,CAAC,KAAK,EAAE,EAAE,CAAC;IAChB,MAAM,CAAC,IAAI,CAAC,MAAM,EAAE,WAAW,CAAC,CAAC;IACjC,OAAO,GAAS,EAAE;QAChB,MAAM,CAAC,cAAc,CAAC,MAAM,EAAE,WAAW,CAAC,CAAC;QAC3C,YAAY,CAAC,KAAK,CAAC,CAAC;IACtB,CAAC,CAAC;AACJ,CAAC"}

package/lib/dist/mcp/tools.d.ts

@@ -25,6 +25,28 @@ export declare class NotIndexedError extends Error {
  */
 export declare class PathRefusalError extends Error {
 }
+/**
+ * Normalize Erlang-native symbol spellings in an explore query into the shapes
+ * the rest of the pipeline already understands. Agents working Erlang code
+ * name symbols the way the language spells them — `mod:fn/3`, `init/2` — and
+ * those tokens previously died in both consumers: the flow-builder's token
+ * filter rejects `:` and `/arity` outright, and the search-side field parser
+ * eats `mod:fn` as an unknown `field:value`. Measured on cowboy: the agent
+ * named `cowboy_stream_h:request_process/3` in two queries, got no body back
+ * either time, and fell back to Read.
+ *
+ *   - `fn/3` → `fn` (arity tail after an identifier; a path segment like
+ *     `src/2fa` doesn't match because the tail must be all digits)
+ *   - `mod:fn` → `mod.fn` (exactly one colon between identifiers, so it rides
+ *     the existing Class.method qualified handling; `::`, URLs, drive letters,
+ *     and times don't match, and the query language's own field prefixes —
+ *     kind:/lang:/language:/path:/name: — are left alone)
+ *
+ * Safe cross-language: Lua's `t:m` spelling maps to the same `t.m` its
+ * qualified names use, and no other supported spelling contains a bare
+ * single-colon identifier pair.
+ */
+export declare function normalizeQuerySpelling(query: string): string;
 /**
  * Calculate the recommended number of codegraph_explore calls based on project size.
  * Larger codebases need more exploration calls to cover their surface area,

package/lib/dist/mcp/tools.d.ts.map

@@ -1 +1 @@
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package/lib/dist/mcp/tools.js

@@ -6,6 +6,7 @@
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.ToolHandler = exports.tools = exports.PathRefusalError = exports.NotIndexedError = void 0;
+exports.normalizeQuerySpelling = normalizeQuerySpelling;
 exports.getExploreBudget = getExploreBudget;
 exports.getExploreOutputBudget = getExploreOutputBudget;
 exports.formatStaleBanner = formatStaleBanner;
@@ -85,6 +86,32 @@ function lastQualifierPart(symbol) {
     const parts = symbol.split(/::|[./]/).filter((p) => p.length > 0);
     return parts[parts.length - 1] ?? symbol;
 }
+/**
+ * Normalize Erlang-native symbol spellings in an explore query into the shapes
+ * the rest of the pipeline already understands. Agents working Erlang code
+ * name symbols the way the language spells them — `mod:fn/3`, `init/2` — and
+ * those tokens previously died in both consumers: the flow-builder's token
+ * filter rejects `:` and `/arity` outright, and the search-side field parser
+ * eats `mod:fn` as an unknown `field:value`. Measured on cowboy: the agent
+ * named `cowboy_stream_h:request_process/3` in two queries, got no body back
+ * either time, and fell back to Read.
+ *
+ *   - `fn/3` → `fn` (arity tail after an identifier; a path segment like
+ *     `src/2fa` doesn't match because the tail must be all digits)
+ *   - `mod:fn` → `mod.fn` (exactly one colon between identifiers, so it rides
+ *     the existing Class.method qualified handling; `::`, URLs, drive letters,
+ *     and times don't match, and the query language's own field prefixes —
+ *     kind:/lang:/language:/path:/name: — are left alone)
+ *
+ * Safe cross-language: Lua's `t:m` spelling maps to the same `t.m` its
+ * qualified names use, and no other supported spelling contains a bare
+ * single-colon identifier pair.
+ */
+function normalizeQuerySpelling(query) {
+    return query
+        .replace(/\b([A-Za-z_][\w@]*)\/(\d{1,3})(?=$|[\s,()[\]/])/g, '$1')
+        .replace(/(^|[\s,()[\]])(?!(?:kind|lang|language|path|name):)([a-z_][\w@]*):([A-Za-z_][\w@]*)(?=$|[\s,()[\]])/g, '$1$2.$3');
+}
 /**
  * Calculate the recommended number of codegraph_explore calls based on project size.
  * Larger codebases need more exploration calls to cover their surface area,
@@ -274,8 +301,7 @@ function numberSourceLines(slice, firstLineNumber) {
  * extension) stop blowing every header up to H1–H4. The path is bold + a code
  * span so it still reads as a header, and the leading ``**` `` stays a UNIQUE,
  * greppable marker — no other explore line begins with it — that the explore
- * truncation boundary (`handleExplore`) and the offload chunker
- * (`reasoning/reasoner.ts`) both key off to cut on whole file sections.
+ * truncation boundary (`handleExplore`) keys off to cut on whole file sections.
  */
 const FILE_SECTION_PREFIX = '**`';
 // Placeholder for codegraph_explore's "Found N symbols across M files." line.
@@ -1660,7 +1686,7 @@ class ToolHandler {
             // names (Class.method / Class::method) — the agent's most precise input,
             // resolved exactly by findAllSymbols. (The old strip mangled Class.method
             // into Class, throwing the method away.)
-            const FILE_EXT = /\.(?:java|kt|kts|ts|tsx|js|jsx|mjs|cjs|cs|py|go|rb|php|swift|rs|cpp|cc|cxx|c|h|hpp|scala|lua|dart|vue|svelte|astro)$/i;
+            const FILE_EXT = /\.(?:java|kt|kts|ts|tsx|js|jsx|mjs|cjs|cs|py|go|rb|php|swift|rs|cpp|cc|cxx|c|h|hpp|scala|lua|dart|vue|svelte|astro|erl|hrl)$/i;
             const tokens = [...new Set(query.split(/[\s,()[\]]+/)
                     .map((t) => t.replace(FILE_EXT, '').trim())
                     .filter((t) => t.length >= 3 && /^[A-Za-z_$][\w$]*(?:(?:::|\.)[\w$]+)*$/.test(t)))].slice(0, 16);
@@ -1722,13 +1748,19 @@ class ToolHandler {
                 }
                 // Same token, non-callable synth endpoints (capped, precision-gated on an
                 // actual heuristic edge so plain config constants never qualify).
+                // Per-token sub-cap so one token's many endpoints (10 nix option writes
+                // of `programs.git.enable` across test configs) can't fill the pool
+                // before later tokens (`home.file`) get a slot.
                 if (dynNamed.size < 12) {
+                    let tokenDyn = 0;
                     for (const n of hits) {
                         if (CALLABLE.has(n.kind) || !DYN_KINDS.has(n.kind) || dynNamed.has(n.id))
                             continue;
-                        if (hasHeuristicEdge(n.id))
+                        if (hasHeuristicEdge(n.id)) {
                             dynNamed.set(n.id, n);
-                        if (dynNamed.size >= 12)
+                            tokenDyn++;
+                        }
+                        if (dynNamed.size >= 12 || tokenDyn >= 4)
                             break;
                     }
                 }
@@ -2359,9 +2391,12 @@ class ToolHandler {
      * tax on small projects while earning its keep on large ones.
      */
     async handleExplore(args) {
-        const query = this.validateString(args.query, 'query');
-        if (typeof query !== 'string')
-            return query;
+        const rawQuery = this.validateString(args.query, 'query');
+        if (typeof rawQuery !== 'string')
+            return rawQuery;
+        // One normalization point so the flow-builder, relevance search, and
+        // ranking all see the same canonical spelling (Erlang `mod:fn/arity`).
+        const query = normalizeQuerySpelling(rawQuery);
         const cg = this.getCodeGraph(args.projectPath);
         const projectRoot = cg.getProjectRoot();
         // Resolve adaptive output budget from project size. Falls back to the
@@ -2443,7 +2478,7 @@ class ToolHandler {
         // overloads (the query also named the type) all earn it. (#1064)
         const tierSeedIds = new Set();
         {
-            const FILE_EXT = /\.(?:java|kt|kts|ts|tsx|js|jsx|mjs|cjs|cs|py|go|rb|php|swift|rs|cpp|cc|cxx|c|h|hpp|scala|lua|dart|vue|svelte|astro)$/i;
+            const FILE_EXT = /\.(?:java|kt|kts|ts|tsx|js|jsx|mjs|cjs|cs|py|go|rb|php|swift|rs|cpp|cc|cxx|c|h|hpp|scala|lua|dart|vue|svelte|astro|erl|hrl)$/i;
             const CALLABLE = new Set(['method', 'function', 'component', 'constructor']);
             const isTestPath = (p) => /(^|\/)(tests?|specs?|__tests__|testdata|mocks?|fixtures?)\//i.test(p) || /\.(test|spec)\.[a-z]+$/i.test(p);
             const bodyLines = (n) => Math.max(0, (n.endLine ?? n.startLine) - n.startLine);
@@ -3874,6 +3909,16 @@ class ToolHandler {
             lines.push(`**Journal mode:** ⚠ ${journalMode || 'unknown'} — WAL not active, so reads ` +
                 `can block on a concurrent write (WAL appears unsupported on this filesystem)`);
         }
+        // Non-zero at rest means a resolution pass was interrupted mid-run, so
+        // some files' call/impact edges are missing until the next sync sweeps
+        // the leftovers (#1187). Surface it — an agent trusting an incomplete
+        // blast radius is worse than one that knows to re-sync.
+        const pendingRefs = cg.getPendingReferenceCount();
+        if (pendingRefs > 0) {
+            lines.push(`**Pending resolution:** ⚠ ${pendingRefs} references from an interrupted ` +
+                `index run — some caller/impact edges are missing until the next sync ` +
+                `(any file change triggers it, or run \`codegraph sync\`)`);
+        }
         lines.push('', '**Nodes by Kind:**');
         for (const [kind, count] of Object.entries(stats.nodesByKind)) {
             if (count > 0) {
@@ -4187,6 +4232,26 @@ class ToolHandler {
      * results across all matching symbols (e.g., multiple classes with an `execute` method).
      */
     findAllSymbols(cg, symbol) {
+        // Nix option paths: the declaration is stored as `options.<path>` and
+        // config writes carry longer/quoted tails (`<path>."git/config".text`),
+        // so a dotted option token (`xdg.configFile`, `launchd.user.agents`) has
+        // no exact-name node and would degrade to bare-tail FTS soup — burying
+        // the declaration hub the nix-option-path edges hang off. Resolve the
+        // convention directly: declaration first, then the exact write, then a
+        // capped prefix scan of write sites. Three index hits; non-nix graphs
+        // fall straight through.
+        if (/^[a-z][\w'-]*(?:\.[\w'-]+)+$/.test(symbol)) {
+            const optionHits = [
+                ...cg.getNodesByName(`options.${symbol}`),
+                ...cg.getNodesByName(symbol),
+                ...cg.getNodesByNamePrefix(`${symbol}.`, 12),
+            ].filter((n) => n.language === 'nix');
+            if (optionHits.length > 0) {
+                const seen = new Set();
+                const nodes = optionHits.filter((n) => !seen.has(n.id) && !!seen.add(n.id)).slice(0, 10);
+                return { nodes, note: '' };
+            }
+        }
         let results = cg.searchNodes(symbol, { limit: 50 });
         // Mirror the fallback in `findSymbol` for qualified queries — FTS
         // strips colons, so a module-qualified lookup needs a second pass