@cognium-ai/mcp-server 0.1.0 → 0.1.1

package/README.md

@@ -68,6 +68,11 @@ spec.
 > The engine has no native "partial" state; it is a boundary heuristic at
 > confidence 0.7 over the engine's already-filtered match set
 > (min confidence 0.3).
+>
+> **Empty spec:** if no requirements parse from `spec_dir` (missing, empty, or
+> malformed `spec.md`), `alignment_score` is reported as **0** with an
+> explanatory `summary` — never a misleading 100 — so a `>= N` gate fails
+> safely instead of passing on a spec that was never read.
 
 ### `find_spec_drift`
 
@@ -107,14 +112,20 @@ Search file contents under a code root with a JavaScript regular expression.
 ```jsonc
 {
   "matches": [
-    { "file": "src/cart.ts", "span": [3, 3], "snippet": "return price * quantity;" }
+    { "file": "src/cart.ts", "span": [7, 7], "snippet": "return unitPrice * quantity;" }
   ]
 }
 ```
 
 > `span` is **line-based** `[startLine, endLine]` (1-based), **not** character
-> offsets. Binary/large files (> 1 MiB) and common build/vendor directories are
-> skipped; results are capped at 1000 matches.
+> offsets. Files larger than 1 MiB, files detected as binary (NUL byte in the
+> leading window), and common build/vendor directories are skipped; results are
+> capped at 1000 matches.
+>
+> The pattern is validated once up front (an invalid regex errors even over an
+> empty tree). A 2 s wall-clock budget bounds total scanning between matches;
+> it does not interrupt a single `exec`, so the 1 MiB per-file cap is the real
+> bound against a catastrophic-backtracking pattern.
 
 ## Field mapping (engine → MCP boundary)
 

package/dist/mappers.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"mappers.d.ts","sourceRoot":"","sources":["../src/mappers.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,cAAc,CAAC;AAElD,2EAA2E;AAC3E,eAAO,MAAM,4BAA4B,MAAM,CAAC;AAEhD,MAAM,MAAM,iBAAiB,GAAG,SAAS,GAAG,SAAS,GAAG,WAAW,CAAC;AAEpE,MAAM,WAAW,mBAAmB;IAClC,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,IAAI,CAAC,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;CACzB;AAED,MAAM,WAAW,iBAAiB;IAChC,EAAE,EAAE,MAAM,CAAC;IACX,MAAM,EAAE,iBAAiB,CAAC;IAC1B,QAAQ,EAAE,mBAAmB,CAAC;CAC/B;AAED,MAAM,WAAW,uBAAuB;IACtC,eAAe,EAAE,MAAM,CAAC;IACxB,YAAY,EAAE,iBAAiB,EAAE,CAAC;IAClC,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,MAAM,SAAS,GAAG,mBAAmB,GAAG,mBAAmB,CAAC;AAElE,MAAM,WAAW,KAAK;IACpB,IAAI,EAAE,SAAS,CAAC;IAChB,QAAQ,EAAE,MAAM,CAAC;IACjB,gBAAgB,EAAE,MAAM,CAAC;CAC1B;AAED,MAAM,WAAW,mBAAmB;IAClC,MAAM,EAAE,KAAK,EAAE,CAAC;CACjB;AAED,2EAA2E;AAC3E,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,aAAa,GAAG,uBAAuB,CA6BlF;AAED,mEAAmE;AACnE,wBAAgB,WAAW,CAAC,MAAM,EAAE,aAAa,GAAG,mBAAmB,CAqBtE"}
+{"version":3,"file":"mappers.d.ts","sourceRoot":"","sources":["../src/mappers.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,cAAc,CAAC;AAElD,2EAA2E;AAC3E,eAAO,MAAM,4BAA4B,MAAM,CAAC;AAEhD,MAAM,MAAM,iBAAiB,GAAG,SAAS,GAAG,SAAS,GAAG,WAAW,CAAC;AAEpE,MAAM,WAAW,mBAAmB;IAClC,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,IAAI,CAAC,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;CACzB;AAED,MAAM,WAAW,iBAAiB;IAChC,EAAE,EAAE,MAAM,CAAC;IACX,MAAM,EAAE,iBAAiB,CAAC;IAC1B,QAAQ,EAAE,mBAAmB,CAAC;CAC/B;AAED,MAAM,WAAW,uBAAuB;IACtC,eAAe,EAAE,MAAM,CAAC;IACxB,YAAY,EAAE,iBAAiB,EAAE,CAAC;IAClC,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,MAAM,SAAS,GAAG,mBAAmB,GAAG,mBAAmB,CAAC;AAElE,MAAM,WAAW,KAAK;IACpB,IAAI,EAAE,SAAS,CAAC;IAChB,QAAQ,EAAE,MAAM,CAAC;IACjB,gBAAgB,EAAE,MAAM,CAAC;CAC1B;AAED,MAAM,WAAW,mBAAmB;IAClC,MAAM,EAAE,KAAK,EAAE,CAAC;CACjB;AAED,2EAA2E;AAC3E,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,aAAa,GAAG,uBAAuB,CA2ClF;AAED,mEAAmE;AACnE,wBAAgB,WAAW,CAAC,MAAM,EAAE,aAAa,GAAG,mBAAmB,CAqBtE"}

package/dist/mappers.js

@@ -10,6 +10,18 @@
 export const PARTIAL_CONFIDENCE_THRESHOLD = 0.7;
 /** Map a `SpecGapResult` to the `verify_spec_conformance` output shape. */
 export function toVerifyConformance(result) {
+    // Empty-spec guard: the engine returns specAlignmentScore=100 when zero
+    // requirements parse from spec_dir (a missing/empty/malformed spec). A
+    // consumer gating on `alignment_score >= N` would treat that as a pass.
+    // Surface it as a non-passing 0 with an explicit summary instead.
+    if (result.summary.totalRequirements === 0) {
+        return {
+            alignment_score: 0,
+            requirements: [],
+            summary: 'No requirements parsed from spec_dir — check the path and that ' +
+                'spec.md uses "- REQ-NNN: ..." bullets.',
+        };
+    }
     const requirements = [];
     for (const match of result.coveredRequirements) {
         requirements.push({

package/dist/mappers.js.map

@@ -1 +1 @@
-{"version":3,"file":"mappers.js","sourceRoot":"","sources":["../src/mappers.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAIH,2EAA2E;AAC3E,MAAM,CAAC,MAAM,4BAA4B,GAAG,GAAG,CAAC;AAkChD,2EAA2E;AAC3E,MAAM,UAAU,mBAAmB,CAAC,MAAqB;IACvD,MAAM,YAAY,GAAwB,EAAE,CAAC;IAE7C,KAAK,MAAM,KAAK,IAAI,MAAM,CAAC,mBAAmB,EAAE,CAAC;QAC/C,YAAY,CAAC,IAAI,CAAC;YAChB,EAAE,EAAE,KAAK,CAAC,WAAW,CAAC,EAAE;YACxB,MAAM,EAAE,KAAK,CAAC,UAAU,IAAI,4BAA4B,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,SAAS;YAChF,QAAQ,EAAE,EAAE,QAAQ,EAAE,KAAK,CAAC,eAAe,EAAE;SAC9C,CAAC,CAAC;IACL,CAAC;IAED,KAAK,MAAM,SAAS,IAAI,MAAM,CAAC,qBAAqB,EAAE,CAAC;QACrD,YAAY,CAAC,IAAI,CAAC;YAChB,EAAE,EAAE,SAAS,CAAC,WAAW,CAAC,EAAE;YAC5B,MAAM,EAAE,WAAW;YACnB,QAAQ,EAAE,EAAE;SACb,CAAC,CAAC;IACL,CAAC;IAED,MAAM,EAAE,OAAO,EAAE,iBAAiB,EAAE,eAAe,EAAE,YAAY,EAAE,GAAG,MAAM,CAAC,OAAO,CAAC;IACrF,MAAM,OAAO,GACX,GAAG,OAAO,IAAI,iBAAiB,0BAA0B,eAAe,MAAM;QAC9E,GAAG,YAAY,yBAAyB,CAAC;IAE3C,OAAO;QACL,eAAe,EAAE,MAAM,CAAC,kBAAkB;QAC1C,YAAY;QACZ,OAAO;KACR,CAAC;AACJ,CAAC;AAED,mEAAmE;AACnE,MAAM,UAAU,WAAW,CAAC,MAAqB;IAC/C,MAAM,MAAM,GAAY,EAAE,CAAC;IAE3B,KAAK,MAAM,QAAQ,IAAI,MAAM,CAAC,qBAAqB,EAAE,CAAC;QACpD,MAAM,CAAC,IAAI,CAAC;YACV,IAAI,EAAE,mBAAmB;YACzB,QAAQ,EAAE,QAAQ,CAAC,YAAY;YAC/B,gBAAgB,EAAE,QAAQ,CAAC,UAAU;SACtC,CAAC,CAAC;IACL,CAAC;IAED,KAAK,MAAM,SAAS,IAAI,MAAM,CAAC,qBAAqB,EAAE,CAAC;QACrD,MAAM,EAAE,EAAE,EAAE,WAAW,EAAE,GAAG,SAAS,CAAC,WAAW,CAAC;QAClD,MAAM,CAAC,IAAI,CAAC;YACV,IAAI,EAAE,mBAAmB;YACzB,QAAQ,EAAE,EAAE;YACZ,gBAAgB,EAAE,SAAS,CAAC,MAAM,IAAI,aAAa,EAAE,KAAK,WAAW,EAAE;SACxE,CAAC,CAAC;IACL,CAAC;IAED,OAAO,EAAE,MAAM,EAAE,CAAC;AACpB,CAAC"}
+{"version":3,"file":"mappers.js","sourceRoot":"","sources":["../src/mappers.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAIH,2EAA2E;AAC3E,MAAM,CAAC,MAAM,4BAA4B,GAAG,GAAG,CAAC;AAkChD,2EAA2E;AAC3E,MAAM,UAAU,mBAAmB,CAAC,MAAqB;IACvD,wEAAwE;IACxE,uEAAuE;IACvE,wEAAwE;IACxE,kEAAkE;IAClE,IAAI,MAAM,CAAC,OAAO,CAAC,iBAAiB,KAAK,CAAC,EAAE,CAAC;QAC3C,OAAO;YACL,eAAe,EAAE,CAAC;YAClB,YAAY,EAAE,EAAE;YAChB,OAAO,EACL,iEAAiE;gBACjE,wCAAwC;SAC3C,CAAC;IACJ,CAAC;IAED,MAAM,YAAY,GAAwB,EAAE,CAAC;IAE7C,KAAK,MAAM,KAAK,IAAI,MAAM,CAAC,mBAAmB,EAAE,CAAC;QAC/C,YAAY,CAAC,IAAI,CAAC;YAChB,EAAE,EAAE,KAAK,CAAC,WAAW,CAAC,EAAE;YACxB,MAAM,EAAE,KAAK,CAAC,UAAU,IAAI,4BAA4B,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,SAAS;YAChF,QAAQ,EAAE,EAAE,QAAQ,EAAE,KAAK,CAAC,eAAe,EAAE;SAC9C,CAAC,CAAC;IACL,CAAC;IAED,KAAK,MAAM,SAAS,IAAI,MAAM,CAAC,qBAAqB,EAAE,CAAC;QACrD,YAAY,CAAC,IAAI,CAAC;YAChB,EAAE,EAAE,SAAS,CAAC,WAAW,CAAC,EAAE;YAC5B,MAAM,EAAE,WAAW;YACnB,QAAQ,EAAE,EAAE;SACb,CAAC,CAAC;IACL,CAAC;IAED,MAAM,EAAE,OAAO,EAAE,iBAAiB,EAAE,eAAe,EAAE,YAAY,EAAE,GAAG,MAAM,CAAC,OAAO,CAAC;IACrF,MAAM,OAAO,GACX,GAAG,OAAO,IAAI,iBAAiB,0BAA0B,eAAe,MAAM;QAC9E,GAAG,YAAY,yBAAyB,CAAC;IAE3C,OAAO;QACL,eAAe,EAAE,MAAM,CAAC,kBAAkB;QAC1C,YAAY;QACZ,OAAO;KACR,CAAC;AACJ,CAAC;AAED,mEAAmE;AACnE,MAAM,UAAU,WAAW,CAAC,MAAqB;IAC/C,MAAM,MAAM,GAAY,EAAE,CAAC;IAE3B,KAAK,MAAM,QAAQ,IAAI,MAAM,CAAC,qBAAqB,EAAE,CAAC;QACpD,MAAM,CAAC,IAAI,CAAC;YACV,IAAI,EAAE,mBAAmB;YACzB,QAAQ,EAAE,QAAQ,CAAC,YAAY;YAC/B,gBAAgB,EAAE,QAAQ,CAAC,UAAU;SACtC,CAAC,CAAC;IACL,CAAC;IAED,KAAK,MAAM,SAAS,IAAI,MAAM,CAAC,qBAAqB,EAAE,CAAC;QACrD,MAAM,EAAE,EAAE,EAAE,WAAW,EAAE,GAAG,SAAS,CAAC,WAAW,CAAC;QAClD,MAAM,CAAC,IAAI,CAAC;YACV,IAAI,EAAE,mBAAmB;YACzB,QAAQ,EAAE,EAAE;YACZ,gBAAgB,EAAE,SAAS,CAAC,MAAM,IAAI,aAAa,EAAE,KAAK,WAAW,EAAE;SACxE,CAAC,CAAC;IACL,CAAC;IAED,OAAO,EAAE,MAAM,EAAE,CAAC;AACpB,CAAC"}

package/dist/server.js

@@ -8,7 +8,7 @@ import { registerFindPattern } from './tools/find-pattern.js';
 export function buildServer() {
     const server = new McpServer({
         name: 'cognium-mcp',
-        version: '0.1.0',
+        version: '0.1.1',
     });
     registerVerifySpecConformance(server);
     registerFindSpecDrift(server);

package/dist/tools/find-pattern.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"find-pattern.d.ts","sourceRoot":"","sources":["../../src/tools/find-pattern.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAIH,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AAoCzE,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,SAAS,GAAG,IAAI,CA6D3D"}
+{"version":3,"file":"find-pattern.d.ts","sourceRoot":"","sources":["../../src/tools/find-pattern.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAIH,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AAqDzE,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,SAAS,GAAG,IAAI,CAsE3D"}

package/dist/tools/find-pattern.js

@@ -13,6 +13,16 @@ import { z } from 'zod';
 import { walkFiles } from '../walk.js';
 /** Hard cap on total matches returned across all files. */
 const MAX_MATCHES = 1000;
+/**
+ * Wall-clock budget for the whole search, checked between regex `exec` calls
+ * (i.e. between matches and between files). A caller/LLM-supplied regex can
+ * trigger catastrophic backtracking; this bounds how long we keep scanning.
+ *
+ * It does NOT interrupt a single `exec` mid-flight — JS regex is synchronous
+ * and uninterruptible — so the per-file 1 MiB size cap in `walk.ts` is the
+ * real bound on the worst-case cost of one match attempt.
+ */
+const TIME_BUDGET_MS = 2000;
 const inputSchema = {
     pattern: z.string().describe('JavaScript regular expression (applied with the global flag)'),
     code_root: z.string().describe('Path to the code root to search'),
@@ -33,6 +43,11 @@ function lineAt(text, end) {
     }
     return line;
 }
+/** Heuristic binary detection: a NUL byte in the leading window. */
+function looksBinary(content) {
+    const window = content.length < 8192 ? content : content.slice(0, 8192);
+    return window.includes('\u0000');
+}
 export function registerFindPattern(server) {
     server.registerTool('find_pattern', {
         title: 'Find Pattern',
@@ -42,10 +57,20 @@ export function registerFindPattern(server) {
         inputSchema,
         outputSchema,
     }, async ({ pattern, code_root }) => {
+        // Validate the pattern once, up front — fail fast even when the code
+        // root contains no files (the old per-file compile silently returned
+        // an empty result for an invalid regex over an empty tree).
+        try {
+            new RegExp(pattern, 'g');
+        }
+        catch (err) {
+            throw new Error(`Invalid regular expression: ${err.message}`);
+        }
         const matches = [];
         const files = walkFiles(code_root);
+        const deadline = Date.now() + TIME_BUDGET_MS;
         for (const file of files) {
-            if (matches.length >= MAX_MATCHES)
+            if (matches.length >= MAX_MATCHES || Date.now() > deadline)
                 break;
             let content;
             try {
@@ -54,14 +79,12 @@ export function registerFindPattern(server) {
             catch {
                 continue;
             }
+            // Skip binaries: the size cap alone lets sub-1-MiB binaries through,
+            // and reading them as UTF-8 yields garbage matches.
+            if (looksBinary(content))
+                continue;
             // Fresh regex per file so lastIndex state never leaks across files.
-            let re;
-            try {
-                re = new RegExp(pattern, 'g');
-            }
-            catch (err) {
-                throw new Error(`Invalid regular expression: ${err.message}`);
-            }
+            const re = new RegExp(pattern, 'g');
             let m;
             while ((m = re.exec(content)) !== null) {
                 const startLine = lineAt(content, m.index);
@@ -74,7 +97,7 @@ export function registerFindPattern(server) {
                     span: [startLine, endLine],
                     snippet,
                 });
-                if (matches.length >= MAX_MATCHES)
+                if (matches.length >= MAX_MATCHES || Date.now() > deadline)
                     break;
                 // Guard against zero-width matches looping forever.
                 if (m.index === re.lastIndex)

package/dist/tools/find-pattern.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@cognium-ai/mcp-server",
-  "version": "0.1.0",
+  "version": "0.1.1",
   "description": "MCP server exposing Cognium spec-conformance, spec-drift, and pattern-search tools over stdio",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",