@cogitator-ai/core 0.19.1 → 0.19.2

package/dist/causal/discovery/prompts.js

@@ -149,25 +149,59 @@ Respond in JSON format:
   "reasoning": "Analysis explanation"
 }`;
 }
+function isRecord(value) {
+    return typeof value === 'object' && value !== null && !Array.isArray(value);
+}
+function readNonEmptyString(value) {
+    return typeof value === 'string' && value.trim().length > 0 ? value : null;
+}
+function readUnitNumber(value, fallback) {
+    if (typeof value !== 'number' || !Number.isFinite(value)) {
+        return fallback;
+    }
+    return Math.max(0, Math.min(1, value));
+}
+function parseExtractedVariable(value) {
+    if (!isRecord(value))
+        return null;
+    const id = readNonEmptyString(value.id);
+    if (!id)
+        return null;
+    return {
+        id,
+        name: readNonEmptyString(value.name) ?? id,
+        type: readNonEmptyString(value.type) ?? 'observed',
+    };
+}
 export function parseCausalExtractionResponse(response) {
     try {
         const jsonMatch = /\{[\s\S]*\}/.exec(response);
         if (!jsonMatch)
             return null;
         const parsed = JSON.parse(jsonMatch[0]);
-        if (!parsed.relationships || !Array.isArray(parsed.relationships)) {
+        if (!isRecord(parsed) || !Array.isArray(parsed.relationships)) {
             return null;
         }
+        const relationships = [];
+        for (const item of parsed.relationships) {
+            if (!isRecord(item))
+                continue;
+            const cause = parseExtractedVariable(item.cause);
+            const effect = parseExtractedVariable(item.effect);
+            if (!cause || !effect)
+                continue;
+            relationships.push({
+                cause,
+                effect,
+                relationType: readNonEmptyString(item.relationType) ?? 'causes',
+                strength: readUnitNumber(item.strength, 0.5),
+                confidence: readUnitNumber(item.confidence, 0.5),
+                mechanism: readNonEmptyString(item.mechanism) ?? '',
+            });
+        }
         return {
-            relationships: parsed.relationships.map((r) => ({
-                cause: r.cause,
-                effect: r.effect,
-                relationType: r.relationType,
-                strength: typeof r.strength === 'number' ? r.strength : 0.5,
-                confidence: typeof r.confidence === 'number' ? r.confidence : 0.5,
-                mechanism: r.mechanism || '',
-            })),
-            reasoning: parsed.reasoning || '',
+            relationships,
+            reasoning: readNonEmptyString(parsed.reasoning) ?? '',
         };
     }
     catch {

package/dist/causal/discovery/prompts.js.map

@@ -1 +1 @@
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package/dist/causal/graph/causal-graph.d.ts.map

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package/dist/causal/graph/causal-graph.js

@@ -18,15 +18,15 @@ export class CausalGraphImpl {
     }
     static fromData(data) {
         const graph = new CausalGraphImpl(data.id, data.name);
-        graph.createdAt = data.createdAt;
-        graph.updatedAt = data.updatedAt;
-        graph.version = data.version;
         for (const node of data.nodes) {
             graph.addNode(node);
         }
         for (const edge of data.edges) {
             graph.addEdge(edge);
         }
+        graph.createdAt = data.createdAt;
+        graph.updatedAt = data.updatedAt;
+        graph.version = data.version;
         return graph;
     }
     addNode(node) {

package/dist/causal/graph/causal-graph.js.map

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package/dist/causal/graph/graph-builder.js

@@ -1,4 +1,4 @@
-import { CausalGraphImpl } from './causal-graph';
+import { CausalGraphImpl } from './causal-graph.js';
 import { nanoid } from 'nanoid';
 export class CausalGraphBuilder {
     graphId;

package/dist/causal/index.d.ts

@@ -1,28 +1,28 @@
-export { CausalGraphImpl, getTripleType } from './graph/causal-graph';
-export { CausalGraphBuilder } from './graph/graph-builder';
-export { dSeparation, findMinimalSeparatingSet } from './inference/d-separation';
-export { findBackdoorAdjustment, findFrontdoorAdjustment, findAllAdjustmentSets, } from './inference/adjustment';
-export { CounterfactualReasoner, evaluateCounterfactual } from './inference/counterfactual';
-export type { CounterfactualReasonerOptions } from './inference/counterfactual';
-export { CausalInferenceEngine } from './inference/inference-engine';
-export type { CausalInferenceEngineOptions } from './inference/inference-engine';
-export { CausalExtractor } from './discovery/causal-extractor';
-export type { CausalExtractorOptions } from './discovery/causal-extractor';
-export { CausalHypothesisGenerator } from './discovery/hypothesis-generator';
-export type { HypothesisGeneratorOptions } from './discovery/hypothesis-generator';
-export { CausalValidator } from './discovery/causal-validator';
-export type { CausalValidatorOptions, ValidationContext, ForkRequest, } from './discovery/causal-validator';
-export { buildCausalExtractionPrompt, buildHypothesisGenerationPrompt, buildCausalValidationPrompt, buildErrorCausalAnalysisPrompt, parseCausalExtractionResponse, parseHypothesisResponse, parseValidationResponse, parseRootCauseResponse, } from './discovery/prompts';
-export type { ExtractedRelationship, CausalExtractionResult, GeneratedHypothesis, HypothesisGenerationResult, ValidationResult, RootCauseAnalysisResult, } from './discovery/prompts';
-export { CausalEffectPredictor } from './capabilities/effect-predictor';
-export type { EffectPredictorOptions } from './capabilities/effect-predictor';
-export { CausalExplainer } from './capabilities/causal-explainer';
-export type { CausalExplainerOptions } from './capabilities/causal-explainer';
-export { CausalPlanner } from './capabilities/causal-planner';
-export type { CausalPlannerOptions } from './capabilities/causal-planner';
-export { InMemoryCausalGraphStore } from './stores/causal-graph-store';
-export { InMemoryCausalPatternStore } from './stores/causal-pattern-store';
-export { InMemoryInterventionLog } from './stores/intervention-log';
-export { CausalReasoner } from './causal-reasoner';
-export type { CausalReasonerOptions } from './causal-reasoner';
+export { CausalGraphImpl, getTripleType } from './graph/causal-graph.js';
+export { CausalGraphBuilder } from './graph/graph-builder.js';
+export { dSeparation, findMinimalSeparatingSet } from './inference/d-separation.js';
+export { findBackdoorAdjustment, findFrontdoorAdjustment, findAllAdjustmentSets, } from './inference/adjustment.js';
+export { CounterfactualReasoner, evaluateCounterfactual } from './inference/counterfactual.js';
+export type { CounterfactualReasonerOptions } from './inference/counterfactual.js';
+export { CausalInferenceEngine } from './inference/inference-engine.js';
+export type { CausalInferenceEngineOptions } from './inference/inference-engine.js';
+export { CausalExtractor } from './discovery/causal-extractor.js';
+export type { CausalExtractorOptions } from './discovery/causal-extractor.js';
+export { CausalHypothesisGenerator } from './discovery/hypothesis-generator.js';
+export type { HypothesisGeneratorOptions } from './discovery/hypothesis-generator.js';
+export { CausalValidator } from './discovery/causal-validator.js';
+export type { CausalValidatorOptions, ValidationContext, ForkRequest, } from './discovery/causal-validator.js';
+export { buildCausalExtractionPrompt, buildHypothesisGenerationPrompt, buildCausalValidationPrompt, buildErrorCausalAnalysisPrompt, parseCausalExtractionResponse, parseHypothesisResponse, parseValidationResponse, parseRootCauseResponse, } from './discovery/prompts.js';
+export type { ExtractedRelationship, CausalExtractionResult, GeneratedHypothesis, HypothesisGenerationResult, ValidationResult, RootCauseAnalysisResult, } from './discovery/prompts.js';
+export { CausalEffectPredictor } from './capabilities/effect-predictor.js';
+export type { EffectPredictorOptions } from './capabilities/effect-predictor.js';
+export { CausalExplainer } from './capabilities/causal-explainer.js';
+export type { CausalExplainerOptions } from './capabilities/causal-explainer.js';
+export { CausalPlanner } from './capabilities/causal-planner.js';
+export type { CausalPlannerOptions } from './capabilities/causal-planner.js';
+export { InMemoryCausalGraphStore } from './stores/causal-graph-store.js';
+export { InMemoryCausalPatternStore } from './stores/causal-pattern-store.js';
+export { InMemoryInterventionLog } from './stores/intervention-log.js';
+export { CausalReasoner } from './causal-reasoner.js';
+export type { CausalReasonerOptions } from './causal-reasoner.js';
 //# sourceMappingURL=index.d.ts.map

package/dist/causal/index.js

@@ -1,18 +1,18 @@
-export { CausalGraphImpl, getTripleType } from './graph/causal-graph';
-export { CausalGraphBuilder } from './graph/graph-builder';
-export { dSeparation, findMinimalSeparatingSet } from './inference/d-separation';
-export { findBackdoorAdjustment, findFrontdoorAdjustment, findAllAdjustmentSets, } from './inference/adjustment';
-export { CounterfactualReasoner, evaluateCounterfactual } from './inference/counterfactual';
-export { CausalInferenceEngine } from './inference/inference-engine';
-export { CausalExtractor } from './discovery/causal-extractor';
-export { CausalHypothesisGenerator } from './discovery/hypothesis-generator';
-export { CausalValidator } from './discovery/causal-validator';
-export { buildCausalExtractionPrompt, buildHypothesisGenerationPrompt, buildCausalValidationPrompt, buildErrorCausalAnalysisPrompt, parseCausalExtractionResponse, parseHypothesisResponse, parseValidationResponse, parseRootCauseResponse, } from './discovery/prompts';
-export { CausalEffectPredictor } from './capabilities/effect-predictor';
-export { CausalExplainer } from './capabilities/causal-explainer';
-export { CausalPlanner } from './capabilities/causal-planner';
-export { InMemoryCausalGraphStore } from './stores/causal-graph-store';
-export { InMemoryCausalPatternStore } from './stores/causal-pattern-store';
-export { InMemoryInterventionLog } from './stores/intervention-log';
-export { CausalReasoner } from './causal-reasoner';
+export { CausalGraphImpl, getTripleType } from './graph/causal-graph.js';
+export { CausalGraphBuilder } from './graph/graph-builder.js';
+export { dSeparation, findMinimalSeparatingSet } from './inference/d-separation.js';
+export { findBackdoorAdjustment, findFrontdoorAdjustment, findAllAdjustmentSets, } from './inference/adjustment.js';
+export { CounterfactualReasoner, evaluateCounterfactual } from './inference/counterfactual.js';
+export { CausalInferenceEngine } from './inference/inference-engine.js';
+export { CausalExtractor } from './discovery/causal-extractor.js';
+export { CausalHypothesisGenerator } from './discovery/hypothesis-generator.js';
+export { CausalValidator } from './discovery/causal-validator.js';
+export { buildCausalExtractionPrompt, buildHypothesisGenerationPrompt, buildCausalValidationPrompt, buildErrorCausalAnalysisPrompt, parseCausalExtractionResponse, parseHypothesisResponse, parseValidationResponse, parseRootCauseResponse, } from './discovery/prompts.js';
+export { CausalEffectPredictor } from './capabilities/effect-predictor.js';
+export { CausalExplainer } from './capabilities/causal-explainer.js';
+export { CausalPlanner } from './capabilities/causal-planner.js';
+export { InMemoryCausalGraphStore } from './stores/causal-graph-store.js';
+export { InMemoryCausalPatternStore } from './stores/causal-pattern-store.js';
+export { InMemoryInterventionLog } from './stores/intervention-log.js';
+export { CausalReasoner } from './causal-reasoner.js';
 //# sourceMappingURL=index.js.map

package/dist/causal/inference/adjustment.js

@@ -1,4 +1,4 @@
-import { dSeparation } from './d-separation';
+import { dSeparation } from './d-separation.js';
 export function findBackdoorAdjustment(graph, treatment, outcome) {
     if (!graph.hasNode(treatment) || !graph.hasNode(outcome)) {
         return null;

package/dist/causal/inference/d-separation.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"d-separation.d.ts","sourceRoot":"","sources":["../../../src/causal/inference/d-separation.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,WAAW,EAAc,iBAAiB,EAAc,MAAM,qBAAqB,CAAC;AAElG,wBAAgB,WAAW,CACzB,KAAK,EAAE,WAAW,EAClB,CAAC,EAAE,MAAM,GAAG,MAAM,EAAE,EACpB,CAAC,EAAE,MAAM,GAAG,MAAM,EAAE,EACpB,CAAC,GAAE,MAAM,EAAO,GACf,iBAAiB,CAkCnB;AAiID,wBAAgB,wBAAwB,CACtC,KAAK,EAAE,WAAW,EAClB,CAAC,EAAE,MAAM,GAAG,MAAM,EAAE,EACpB,CAAC,EAAE,MAAM,GAAG,MAAM,EAAE,EACpB,SAAS,cAAoB,GAC5B,MAAM,EAAE,GAAG,IAAI,CAiBjB"}

package/dist/causal/inference/d-separation.js

@@ -75,9 +75,7 @@ function isPathBlocked(graph, path, conditioningSet) {
             blockingNodes.push(curr);
         }
     }
-    const totalTriples = path.nodes.length - 2;
-    const blocked = blockingNodes.length === totalTriples;
-    return { blocked, blockingNodes };
+    return { blocked: blockingNodes.length > 0, blockingNodes };
 }
 function getLocalTripleType(graph, a, b, c) {
     const aToB = graph.getEdgeBetween(a, b) !== undefined;

package/dist/causal/inference/d-separation.js.map

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package/dist/causal/inference/inference-engine.d.ts

@@ -1,5 +1,5 @@
 import type { CausalGraph, CausalEffectEstimate, CounterfactualQuery, CounterfactualResult, InterventionQuery, AdjustmentSet, CausalReasoningConfig } from '@cogitator-ai/types';
-import { CounterfactualReasonerOptions } from './counterfactual';
+import { CounterfactualReasonerOptions } from './counterfactual.js';
 export interface CausalInferenceEngineOptions {
     config?: Partial<CausalReasoningConfig>;
     counterfactualOptions?: CounterfactualReasonerOptions;
@@ -17,6 +17,7 @@ export declare class CausalInferenceEngine {
     computeInterventionalEffect(query: InterventionQuery, observedData?: Record<string, number[]>): CausalEffectEstimate;
     private estimateEffectFromData;
     private stratifyData;
+    private estimateATTFromData;
     computeCounterfactual(query: CounterfactualQuery): CounterfactualResult;
     estimateATE(treatment: string, outcome: string, data: Record<string, number[]>): CausalEffectEstimate;
     estimateATT(treatment: string, outcome: string, data: Record<string, number[]>): CausalEffectEstimate;

package/dist/causal/inference/inference-engine.d.ts.map

@@ -1 +1 @@
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package/dist/causal/inference/inference-engine.js

@@ -1,7 +1,7 @@
 import { DEFAULT_CAUSAL_CONFIG } from '@cogitator-ai/types';
-import { dSeparation } from './d-separation';
-import { findBackdoorAdjustment, findFrontdoorAdjustment, findAllAdjustmentSets, } from './adjustment';
-import { CounterfactualReasoner } from './counterfactual';
+import { dSeparation } from './d-separation.js';
+import { findBackdoorAdjustment, findFrontdoorAdjustment, findAllAdjustmentSets, } from './adjustment.js';
+import { CounterfactualReasoner } from './counterfactual.js';
 export class CausalInferenceEngine {
     graph;
     config;
@@ -160,6 +160,51 @@ export class CausalInferenceEngine {
         }
         return Array.from(strataMap.entries()).map(([key, indices]) => ({ key, indices }));
     }
+    estimateATTFromData(treatment, outcome, adjustmentVars, data) {
+        const treatmentValues = data[treatment];
+        const outcomeValues = data[outcome];
+        if (!treatmentValues || !outcomeValues) {
+            return { estimate: NaN, standardError: NaN, confidenceInterval: [NaN, NaN] };
+        }
+        const n = Math.min(treatmentValues.length, outcomeValues.length);
+        if (n === 0) {
+            return { estimate: NaN, standardError: NaN, confidenceInterval: [NaN, NaN] };
+        }
+        if (adjustmentVars.length === 0) {
+            return this.estimateEffectFromData(treatment, outcome, [], data, 1);
+        }
+        const strata = this.stratifyData(data, adjustmentVars, n);
+        const treatedTotal = treatmentValues.slice(0, n).filter((value) => value >= 0.5).length;
+        if (treatedTotal === 0) {
+            return { estimate: NaN, standardError: NaN, confidenceInterval: [NaN, NaN] };
+        }
+        let weightedEffect = 0;
+        let totalWeight = 0;
+        for (const stratum of strata) {
+            const stratumTreated = [];
+            const stratumControl = [];
+            for (const i of stratum.indices) {
+                if (treatmentValues[i] >= 0.5) {
+                    stratumTreated.push(outcomeValues[i]);
+                }
+                else {
+                    stratumControl.push(outcomeValues[i]);
+                }
+            }
+            if (stratumTreated.length > 0 && stratumControl.length > 0) {
+                const treatedMean = stratumTreated.reduce((a, b) => a + b, 0) / stratumTreated.length;
+                const controlMean = stratumControl.reduce((a, b) => a + b, 0) / stratumControl.length;
+                const weight = stratumTreated.length / treatedTotal;
+                weightedEffect += (treatedMean - controlMean) * weight;
+                totalWeight += weight;
+            }
+        }
+        return {
+            estimate: totalWeight > 0 ? weightedEffect / totalWeight : NaN,
+            standardError: NaN,
+            confidenceInterval: [NaN, NaN],
+        };
+    }
     computeCounterfactual(query) {
         if (!this.config.enableCounterfactual) {
             throw new Error('Counterfactual reasoning is disabled in config');
@@ -201,15 +246,15 @@ export class CausalInferenceEngine {
                 formula: identifiability.reason,
             };
         }
-        const ateResult = this.estimateATE(treatment, outcome, data);
-        const att = ateResult.effect;
+        const adjustmentSet = identifiability.adjustmentSet;
+        const attResult = this.estimateATTFromData(treatment, outcome, adjustmentSet.variables, data);
         return {
-            effect: att,
-            standardError: ateResult.standardError,
-            confidenceInterval: ateResult.confidenceInterval,
-            adjustmentSet: identifiability.adjustmentSet,
+            effect: attResult.estimate,
+            standardError: attResult.standardError,
+            confidenceInterval: attResult.confidenceInterval,
+            adjustmentSet,
             isIdentifiable: true,
-            formula: `ATT = E[Y(1) - Y(0) | T=1] estimated via ${identifiability.adjustmentSet.type} adjustment`,
+            formula: `ATT = E[Y(1) - Y(0) | T=1] estimated via ${adjustmentSet.type} adjustment`,
         };
     }
     checkConditionalIndependence(x, y, z) {

package/dist/causal/inference/inference-engine.js.map

@@ -1 +1 @@
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package/dist/causal/stores/causal-graph-store.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"causal-graph-store.d.ts","sourceRoot":"","sources":["../../../src/causal/stores/causal-graph-store.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,eAAe,EAAE,gBAAgB,EAAE,MAAM,qBAAqB,CAAC;AAiC7E,qBAAa,wBAAyB,YAAW,gBAAgB;IAC/D,OAAO,CAAC,MAAM,CAAsC;IACpD,OAAO,CAAC,UAAU,CAA+B;IAE3C,IAAI,CAAC,KAAK,EAAE,eAAe,GAAG,OAAO,CAAC,IAAI,CAAC;IAa3C,IAAI,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,eAAe,GAAG,IAAI,CAAC;IAKtD,YAAY,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,eAAe,GAAG,IAAI,CAAC;IAQ9D,MAAM,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAiBtC,IAAI,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,eAAe,EAAE,CAAC;IAcxD,KAAK,IAAI,IAAI;CAId"}

package/dist/causal/stores/causal-graph-store.js

@@ -1,8 +1,38 @@
+function cloneGraphData(graph) {
+    return {
+        ...graph,
+        nodes: graph.nodes.map((node) => ({
+            ...node,
+            domain: node.domain
+                ? {
+                    ...node.domain,
+                    values: node.domain.values ? [...node.domain.values] : undefined,
+                }
+                : undefined,
+            equation: node.equation
+                ? {
+                    ...node.equation,
+                    coefficients: node.equation.coefficients
+                        ? { ...node.equation.coefficients }
+                        : undefined,
+                    noiseParams: node.equation.noiseParams ? { ...node.equation.noiseParams } : undefined,
+                }
+                : undefined,
+            metadata: node.metadata ? { ...node.metadata } : undefined,
+        })),
+        edges: graph.edges.map((edge) => ({
+            ...edge,
+            conditions: edge.conditions ? [...edge.conditions] : undefined,
+            metadata: edge.metadata ? { ...edge.metadata } : undefined,
+        })),
+        metadata: graph.metadata ? { ...graph.metadata } : undefined,
+    };
+}
 export class InMemoryCausalGraphStore {
     graphs = new Map();
     agentIndex = new Map();
     async save(graph) {
-        this.graphs.set(graph.id, { ...graph });
+        this.graphs.set(graph.id, cloneGraphData(graph));
         const agentId = graph.metadata?.agentId;
         if (agentId) {
             const agentGraphs = this.agentIndex.get(agentId) || [];
@@ -14,7 +44,7 @@ export class InMemoryCausalGraphStore {
     }
     async load(graphId) {
         const graph = this.graphs.get(graphId);
-        return graph ? { ...graph } : null;
+        return graph ? cloneGraphData(graph) : null;
     }
     async loadForAgent(agentId) {
         const graphIds = this.agentIndex.get(agentId);
@@ -50,7 +80,7 @@ export class InMemoryCausalGraphStore {
             }
             return graphs;
         }
-        return Array.from(this.graphs.values()).map((g) => ({ ...g }));
+        return Array.from(this.graphs.values()).map((g) => cloneGraphData(g));
     }
     clear() {
         this.graphs.clear();

package/dist/causal/stores/causal-graph-store.js.map

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