@cogitator-ai/core 0.18.6 → 0.19.2

package/dist/causal/inference/d-separation.js

@@ -64,26 +64,18 @@ function findAllUndirectedPaths(graph, from, to, maxLength = 10) {
     return paths;
 }
 function isPathBlocked(graph, path, conditioningSet) {
+    if (path.nodes.length < 3)
+        return { blocked: false, blockingNodes: [] };
     const blockingNodes = [];
     for (let i = 1; i < path.nodes.length - 1; i++) {
         const prev = path.nodes[i - 1];
         const curr = path.nodes[i];
         const next = path.nodes[i + 1];
-        const tripleType = getLocalTripleType(graph, prev, curr, next);
-        if (tripleType === 'chain' || tripleType === 'fork') {
-            if (conditioningSet.has(curr)) {
-                blockingNodes.push(curr);
-            }
-        }
-        else if (tripleType === 'collider') {
-            const colliderOrDescendantInZ = isColliderOrDescendantInSet(graph, curr, conditioningSet);
-            if (!colliderOrDescendantInZ) {
-                blockingNodes.push(curr);
-            }
+        if (isTripleBlocked(graph, prev, curr, next, conditioningSet)) {
+            blockingNodes.push(curr);
         }
     }
-    const blocked = blockingNodes.length > 0 || hasAllBlockedTriples(graph, path, conditioningSet);
-    return { blocked, blockingNodes };
+    return { blocked: blockingNodes.length > 0, blockingNodes };
 }
 function getLocalTripleType(graph, a, b, c) {
     const aToB = graph.getEdgeBetween(a, b) !== undefined;
@@ -116,24 +108,13 @@ function isColliderOrDescendantInSet(graph, nodeId, conditioningSet) {
     }
     return false;
 }
-function hasAllBlockedTriples(graph, path, conditioningSet) {
-    if (path.nodes.length < 3)
-        return false;
-    for (let i = 1; i < path.nodes.length - 1; i++) {
-        const prev = path.nodes[i - 1];
-        const curr = path.nodes[i];
-        const next = path.nodes[i + 1];
-        const tripleType = getLocalTripleType(graph, prev, curr, next);
-        if (tripleType === 'chain' || tripleType === 'fork') {
-            if (conditioningSet.has(curr)) {
-                return true;
-            }
-        }
-        else if (tripleType === 'collider') {
-            if (!isColliderOrDescendantInSet(graph, curr, conditioningSet)) {
-                return true;
-            }
-        }
+function isTripleBlocked(graph, prev, curr, next, conditioningSet) {
+    const tripleType = getLocalTripleType(graph, prev, curr, next);
+    if (tripleType === 'chain' || tripleType === 'fork') {
+        return conditioningSet.has(curr);
+    }
+    if (tripleType === 'collider') {
+        return !isColliderOrDescendantInSet(graph, curr, conditioningSet);
     }
     return false;
 }

package/dist/causal/inference/d-separation.js.map

@@ -1 +1 @@
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package/dist/causal/inference/inference-engine.d.ts

@@ -1,5 +1,5 @@
 import type { CausalGraph, CausalEffectEstimate, CounterfactualQuery, CounterfactualResult, InterventionQuery, AdjustmentSet, CausalReasoningConfig } from '@cogitator-ai/types';
-import { CounterfactualReasonerOptions } from './counterfactual';
+import { CounterfactualReasonerOptions } from './counterfactual.js';
 export interface CausalInferenceEngineOptions {
     config?: Partial<CausalReasoningConfig>;
     counterfactualOptions?: CounterfactualReasonerOptions;
@@ -17,6 +17,7 @@ export declare class CausalInferenceEngine {
     computeInterventionalEffect(query: InterventionQuery, observedData?: Record<string, number[]>): CausalEffectEstimate;
     private estimateEffectFromData;
     private stratifyData;
+    private estimateATTFromData;
     computeCounterfactual(query: CounterfactualQuery): CounterfactualResult;
     estimateATE(treatment: string, outcome: string, data: Record<string, number[]>): CausalEffectEstimate;
     estimateATT(treatment: string, outcome: string, data: Record<string, number[]>): CausalEffectEstimate;

package/dist/causal/inference/inference-engine.d.ts.map

@@ -1 +1 @@
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package/dist/causal/inference/inference-engine.js

@@ -1,7 +1,7 @@
 import { DEFAULT_CAUSAL_CONFIG } from '@cogitator-ai/types';
-import { dSeparation } from './d-separation';
-import { findBackdoorAdjustment, findFrontdoorAdjustment, findAllAdjustmentSets, } from './adjustment';
-import { CounterfactualReasoner } from './counterfactual';
+import { dSeparation } from './d-separation.js';
+import { findBackdoorAdjustment, findFrontdoorAdjustment, findAllAdjustmentSets, } from './adjustment.js';
+import { CounterfactualReasoner } from './counterfactual.js';
 export class CausalInferenceEngine {
     graph;
     config;
@@ -160,6 +160,51 @@ export class CausalInferenceEngine {
         }
         return Array.from(strataMap.entries()).map(([key, indices]) => ({ key, indices }));
     }
+    estimateATTFromData(treatment, outcome, adjustmentVars, data) {
+        const treatmentValues = data[treatment];
+        const outcomeValues = data[outcome];
+        if (!treatmentValues || !outcomeValues) {
+            return { estimate: NaN, standardError: NaN, confidenceInterval: [NaN, NaN] };
+        }
+        const n = Math.min(treatmentValues.length, outcomeValues.length);
+        if (n === 0) {
+            return { estimate: NaN, standardError: NaN, confidenceInterval: [NaN, NaN] };
+        }
+        if (adjustmentVars.length === 0) {
+            return this.estimateEffectFromData(treatment, outcome, [], data, 1);
+        }
+        const strata = this.stratifyData(data, adjustmentVars, n);
+        const treatedTotal = treatmentValues.slice(0, n).filter((value) => value >= 0.5).length;
+        if (treatedTotal === 0) {
+            return { estimate: NaN, standardError: NaN, confidenceInterval: [NaN, NaN] };
+        }
+        let weightedEffect = 0;
+        let totalWeight = 0;
+        for (const stratum of strata) {
+            const stratumTreated = [];
+            const stratumControl = [];
+            for (const i of stratum.indices) {
+                if (treatmentValues[i] >= 0.5) {
+                    stratumTreated.push(outcomeValues[i]);
+                }
+                else {
+                    stratumControl.push(outcomeValues[i]);
+                }
+            }
+            if (stratumTreated.length > 0 && stratumControl.length > 0) {
+                const treatedMean = stratumTreated.reduce((a, b) => a + b, 0) / stratumTreated.length;
+                const controlMean = stratumControl.reduce((a, b) => a + b, 0) / stratumControl.length;
+                const weight = stratumTreated.length / treatedTotal;
+                weightedEffect += (treatedMean - controlMean) * weight;
+                totalWeight += weight;
+            }
+        }
+        return {
+            estimate: totalWeight > 0 ? weightedEffect / totalWeight : NaN,
+            standardError: NaN,
+            confidenceInterval: [NaN, NaN],
+        };
+    }
     computeCounterfactual(query) {
         if (!this.config.enableCounterfactual) {
             throw new Error('Counterfactual reasoning is disabled in config');
@@ -201,15 +246,15 @@ export class CausalInferenceEngine {
                 formula: identifiability.reason,
             };
         }
-        const ateResult = this.estimateATE(treatment, outcome, data);
-        const att = ateResult.effect;
+        const adjustmentSet = identifiability.adjustmentSet;
+        const attResult = this.estimateATTFromData(treatment, outcome, adjustmentSet.variables, data);
         return {
-            effect: att,
-            standardError: ateResult.standardError,
-            confidenceInterval: ateResult.confidenceInterval,
-            adjustmentSet: identifiability.adjustmentSet,
+            effect: attResult.estimate,
+            standardError: attResult.standardError,
+            confidenceInterval: attResult.confidenceInterval,
+            adjustmentSet,
             isIdentifiable: true,
-            formula: `ATT = E[Y(1) - Y(0) | T=1] estimated via ${identifiability.adjustmentSet.type} adjustment`,
+            formula: `ATT = E[Y(1) - Y(0) | T=1] estimated via ${adjustmentSet.type} adjustment`,
         };
     }
     checkConditionalIndependence(x, y, z) {

package/dist/causal/inference/inference-engine.js.map

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package/dist/causal/stores/causal-graph-store.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"causal-graph-store.d.ts","sourceRoot":"","sources":["../../../src/causal/stores/causal-graph-store.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,eAAe,EAAE,gBAAgB,EAAE,MAAM,qBAAqB,CAAC;AAiC7E,qBAAa,wBAAyB,YAAW,gBAAgB;IAC/D,OAAO,CAAC,MAAM,CAAsC;IACpD,OAAO,CAAC,UAAU,CAA+B;IAE3C,IAAI,CAAC,KAAK,EAAE,eAAe,GAAG,OAAO,CAAC,IAAI,CAAC;IAa3C,IAAI,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,eAAe,GAAG,IAAI,CAAC;IAKtD,YAAY,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,eAAe,GAAG,IAAI,CAAC;IAQ9D,MAAM,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAiBtC,IAAI,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,eAAe,EAAE,CAAC;IAcxD,KAAK,IAAI,IAAI;CAId"}

package/dist/causal/stores/causal-graph-store.js

@@ -1,8 +1,38 @@
+function cloneGraphData(graph) {
+    return {
+        ...graph,
+        nodes: graph.nodes.map((node) => ({
+            ...node,
+            domain: node.domain
+                ? {
+                    ...node.domain,
+                    values: node.domain.values ? [...node.domain.values] : undefined,
+                }
+                : undefined,
+            equation: node.equation
+                ? {
+                    ...node.equation,
+                    coefficients: node.equation.coefficients
+                        ? { ...node.equation.coefficients }
+                        : undefined,
+                    noiseParams: node.equation.noiseParams ? { ...node.equation.noiseParams } : undefined,
+                }
+                : undefined,
+            metadata: node.metadata ? { ...node.metadata } : undefined,
+        })),
+        edges: graph.edges.map((edge) => ({
+            ...edge,
+            conditions: edge.conditions ? [...edge.conditions] : undefined,
+            metadata: edge.metadata ? { ...edge.metadata } : undefined,
+        })),
+        metadata: graph.metadata ? { ...graph.metadata } : undefined,
+    };
+}
 export class InMemoryCausalGraphStore {
     graphs = new Map();
     agentIndex = new Map();
     async save(graph) {
-        this.graphs.set(graph.id, { ...graph });
+        this.graphs.set(graph.id, cloneGraphData(graph));
         const agentId = graph.metadata?.agentId;
         if (agentId) {
             const agentGraphs = this.agentIndex.get(agentId) || [];
@@ -14,7 +44,7 @@ export class InMemoryCausalGraphStore {
     }
     async load(graphId) {
         const graph = this.graphs.get(graphId);
-        return graph ? { ...graph } : null;
+        return graph ? cloneGraphData(graph) : null;
     }
     async loadForAgent(agentId) {
         const graphIds = this.agentIndex.get(agentId);
@@ -50,7 +80,7 @@ export class InMemoryCausalGraphStore {
             }
             return graphs;
         }
-        return Array.from(this.graphs.values()).map((g) => ({ ...g }));
+        return Array.from(this.graphs.values()).map((g) => cloneGraphData(g));
     }
     clear() {
         this.graphs.clear();

package/dist/causal/stores/causal-graph-store.js.map

@@ -1 +1 @@
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+{"version":3,"file":"causal-graph-store.js","sourceRoot":"","sources":["../../../src/causal/stores/causal-graph-store.ts"],"names":[],"mappings":"AAEA,SAAS,cAAc,CAAC,KAAsB;IAC5C,OAAO;QACL,GAAG,KAAK;QACR,KAAK,EAAE,KAAK,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;YAChC,GAAG,IAAI;YACP,MAAM,EAAE,IAAI,CAAC,MAAM;gBACjB,CAAC,CAAC;oBACE,GAAG,IAAI,CAAC,MAAM;oBACd,MAAM,EAAE,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,SAAS;iBACjE;gBACH,CAAC,CAAC,SAAS;YACb,QAAQ,EAAE,IAAI,CAAC,QAAQ;gBACrB,CAAC,CAAC;oBACE,GAAG,IAAI,CAAC,QAAQ;oBAChB,YAAY,EAAE,IAAI,CAAC,QAAQ,CAAC,YAAY;wBACtC,CAAC,CAAC,EAAE,GAAG,IAAI,CAAC,QAAQ,CAAC,YAAY,EAAE;wBACnC,CAAC,CAAC,SAAS;oBACb,WAAW,EAAE,IAAI,CAAC,QAAQ,CAAC,WAAW,CAAC,CAAC,CAAC,EAAE,GAAG,IAAI,CAAC,QAAQ,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC,SAAS;iBACtF;gBACH,CAAC,CAAC,SAAS;YACb,QAAQ,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,GAAG,IAAI,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,SAAS;SAC3D,CAAC,CAAC;QACH,KAAK,EAAE,KAAK,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;YAChC,GAAG,IAAI;YACP,UAAU,EAAE,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,SAAS;YAC9D,QAAQ,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,GAAG,IAAI,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,SAAS;SAC3D,CAAC,CAAC;QACH,QAAQ,EAAE,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,GAAG,KAAK,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,SAAS;KAC7D,CAAC;AACJ,CAAC;AAED,MAAM,OAAO,wBAAwB;IAC3B,MAAM,GAAG,IAAI,GAAG,EAA2B,CAAC;IAC5C,UAAU,GAAG,IAAI,GAAG,EAAoB,CAAC;IAEjD,KAAK,CAAC,IAAI,CAAC,KAAsB;QAC/B,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,EAAE,cAAc,CAAC,KAAK,CAAC,CAAC,CAAC;QAEjD,MAAM,OAAO,GAAG,KAAK,CAAC,QAAQ,EAAE,OAA6B,CAAC;QAC9D,IAAI,OAAO,EAAE,CAAC;YACZ,MAAM,WAAW,GAAG,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC;YACvD,IAAI,CAAC,WAAW,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE,CAAC,EAAE,CAAC;gBACpC,WAAW,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;gBAC3B,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,OAAO,EAAE,WAAW,CAAC,CAAC;YAC5C,CAAC;QACH,CAAC;IACH,CAAC;IAED,KAAK,CAAC,IAAI,CAAC,OAAe;QACxB,MAAM,KAAK,GAAG,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;QACvC,OAAO,KAAK,CAAC,CAAC,CAAC,cAAc,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IAC9C,CAAC;IAED,KAAK,CAAC,YAAY,CAAC,OAAe;QAChC,MAAM,QAAQ,GAAG,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;QAC9C,IAAI,CAAC,QAAQ,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;YAAE,OAAO,IAAI,CAAC;QAEpD,MAAM,QAAQ,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;QAC/C,OAAO,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;IAC7B,CAAC;IAED,KAAK,CAAC,MAAM,CAAC,OAAe;QAC1B,MAAM,KAAK,GAAG,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;QACvC,IAAI,KAAK,EAAE,CAAC;YACV,MAAM,OAAO,GAAG,KAAK,CAAC,QAAQ,EAAE,OAA6B,CAAC;YAC9D,IAAI,OAAO,EAAE,CAAC;gBACZ,MAAM,WAAW,GAAG,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;gBACjD,IAAI,WAAW,EAAE,CAAC;oBAChB,MAAM,GAAG,GAAG,WAAW,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;oBACzC,IAAI,GAAG,IAAI,CAAC,EAAE,CAAC;wBACb,WAAW,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC;oBAC7B,CAAC;gBACH,CAAC;YACH,CAAC;YACD,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;QAC9B,CAAC;IACH,CAAC;IAED,KAAK,CAAC,IAAI,CAAC,OAAgB;QACzB,IAAI,OAAO,EAAE,CAAC;YACZ,MAAM,QAAQ,GAAG,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC;YACpD,MAAM,MAAM,GAAsB,EAAE,CAAC;YACrC,KAAK,MAAM,EAAE,IAAI,QAAQ,EAAE,CAAC;gBAC1B,MAAM,KAAK,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;gBAClC,IAAI,KAAK;oBAAE,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;YAChC,CAAC;YACD,OAAO,MAAM,CAAC;QAChB,CAAC;QAED,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC,CAAC;IACxE,CAAC;IAED,KAAK;QACH,IAAI,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC;QACpB,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,CAAC;IAC1B,CAAC;CACF"}

package/dist/causal/stores/causal-pattern-store.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"causal-pattern-store.d.ts","sourceRoot":"","sources":["../../../src/causal/stores/causal-pattern-store.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,aAAa,EAAE,kBAAkB,EAAE,MAAM,qBAAqB,CAAC;AAE7E,qBAAa,0BAA2B,YAAW,kBAAkB;IACnE,OAAO,CAAC,QAAQ,CAAoC;IACpD,OAAO,CAAC,UAAU,CAAkC;IAE9C,IAAI,CAAC,OAAO,EAAE,aAAa,GAAG,OAAO,CAAC,IAAI,CAAC;IAS3C,YAAY,CAChB,OAAO,EAAE,MAAM,EACf,OAAO,EAAE;QAAE,OAAO,CAAC,EAAE,MAAM,CAAC;QAAC,MAAM,CAAC,EAAE,MAAM,CAAA;KAAE,EAC9C,KAAK,EAAE,MAAM,GACZ,OAAO,CAAC,aAAa,EAAE,CAAC;IA8BrB,QAAQ,CAAC,SAAS,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAQ1C,KAAK,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC;IAuCzE,QAAQ,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC;QACvC,aAAa,EAAE,MAAM,CAAC;QACtB,cAAc,EAAE,MAAM,CAAC;QACvB,WAAW,EAAE,aAAa,EAAE,CAAC;KAC9B,CAAC;IA8BF,KAAK,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,IAAI;CAc9B"}
+{"version":3,"file":"causal-pattern-store.d.ts","sourceRoot":"","sources":["../../../src/causal/stores/causal-pattern-store.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,aAAa,EAAE,kBAAkB,EAAE,MAAM,qBAAqB,CAAC;AAY7E,qBAAa,0BAA2B,YAAW,kBAAkB;IACnE,OAAO,CAAC,QAAQ,CAAoC;IACpD,OAAO,CAAC,UAAU,CAAkC;IAE9C,IAAI,CAAC,OAAO,EAAE,aAAa,GAAG,OAAO,CAAC,IAAI,CAAC;IAS3C,YAAY,CAChB,OAAO,EAAE,MAAM,EACf,OAAO,EAAE;QAAE,OAAO,CAAC,EAAE,MAAM,CAAC;QAAC,MAAM,CAAC,EAAE,MAAM,CAAA;KAAE,EAC9C,KAAK,EAAE,MAAM,GACZ,OAAO,CAAC,aAAa,EAAE,CAAC;IA8BrB,QAAQ,CAAC,SAAS,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAQ1C,KAAK,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC;IAuCzE,QAAQ,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC;QACvC,aAAa,EAAE,MAAM,CAAC;QACtB,cAAc,EAAE,MAAM,CAAC;QACvB,WAAW,EAAE,aAAa,EAAE,CAAC;KAC9B,CAAC;IA8BF,KAAK,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,IAAI;CAc9B"}

package/dist/causal/stores/causal-pattern-store.js

@@ -1,8 +1,17 @@
+function clonePattern(pattern) {
+    return {
+        ...pattern,
+        pattern: {
+            ...pattern.pattern,
+            conditions: [...pattern.pattern.conditions],
+        },
+    };
+}
 export class InMemoryCausalPatternStore {
     patterns = new Map();
     agentIndex = new Map();
     async save(pattern) {
-        this.patterns.set(pattern.id, { ...pattern });
+        this.patterns.set(pattern.id, clonePattern(pattern));
         if (!this.agentIndex.has(pattern.agentId)) {
             this.agentIndex.set(pattern.agentId, new Set());
         }
@@ -21,8 +30,8 @@ export class InMemoryCausalPatternStore {
                 pattern.pattern.trigger.toLowerCase().includes(context.trigger.toLowerCase());
             const effectMatch = !context.effect ||
                 pattern.pattern.effect.toLowerCase().includes(context.effect.toLowerCase());
-            if (triggerMatch || effectMatch) {
-                patterns.push({ ...pattern });
+            if (triggerMatch && effectMatch) {
+                patterns.push(clonePattern(pattern));
             }
         }
         patterns.sort((a, b) => {
@@ -83,7 +92,7 @@ export class InMemoryCausalPatternStore {
         for (const id of patternIds) {
             const pattern = this.patterns.get(id);
             if (pattern) {
-                patterns.push({ ...pattern });
+                patterns.push(clonePattern(pattern));
                 totalSuccessRate += pattern.successRate;
             }
         }

package/dist/causal/stores/causal-pattern-store.js.map

@@ -1 +1 @@
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package/dist/causal/stores/intervention-log.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"intervention-log.d.ts","sourceRoot":"","sources":["../../../src/causal/stores/intervention-log.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,kBAAkB,EAAE,eAAe,EAAE,MAAM,qBAAqB,CAAC;AAE/E,qBAAa,uBAAwB,YAAW,eAAe;IAC7D,OAAO,CAAC,OAAO,CAAyC;IACxD,OAAO,CAAC,UAAU,CAA+B;IAE3C,GAAG,CAAC,MAAM,EAAE,kBAAkB,GAAG,OAAO,CAAC,IAAI,CAAC;IAS9C,UAAU,CAAC,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC,kBAAkB,EAAE,CAAC;IAiBzE,WAAW,CACf,OAAO,EAAE,MAAM,EACf,YAAY,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GACpC,OAAO,CAAC,kBAAkB,EAAE,CAAC;IAwB1B,QAAQ,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC;QACvC,kBAAkB,EAAE,MAAM,CAAC;QAC3B,WAAW,EAAE,MAAM,CAAC;QACpB,iBAAiB,EAAE,MAAM,CAAC;KAC3B,CAAC;IA8BF,OAAO,CAAC,uBAAuB;IA8B/B,KAAK,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,IAAI;CAc9B"}
+{"version":3,"file":"intervention-log.d.ts","sourceRoot":"","sources":["../../../src/causal/stores/intervention-log.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,kBAAkB,EAAE,eAAe,EAAE,MAAM,qBAAqB,CAAC;AAiB/E,qBAAa,uBAAwB,YAAW,eAAe;IAC7D,OAAO,CAAC,OAAO,CAAyC;IACxD,OAAO,CAAC,UAAU,CAA+B;IAE3C,GAAG,CAAC,MAAM,EAAE,kBAAkB,GAAG,OAAO,CAAC,IAAI,CAAC;IAS9C,UAAU,CAAC,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC,kBAAkB,EAAE,CAAC;IAiBzE,WAAW,CACf,OAAO,EAAE,MAAM,EACf,YAAY,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GACpC,OAAO,CAAC,kBAAkB,EAAE,CAAC;IAwB1B,QAAQ,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC;QACvC,kBAAkB,EAAE,MAAM,CAAC;QAC3B,WAAW,EAAE,MAAM,CAAC;QACpB,iBAAiB,EAAE,MAAM,CAAC;KAC3B,CAAC;IA8BF,OAAO,CAAC,uBAAuB;IA8B/B,KAAK,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,IAAI;CAc9B"}

package/dist/causal/stores/intervention-log.js

@@ -1,8 +1,22 @@
+function cloneRecord(record) {
+    return {
+        ...record,
+        intervention: { ...record.intervention },
+        observedBefore: { ...record.observedBefore },
+        observedAfter: { ...record.observedAfter },
+        actualEffect: { ...record.actualEffect },
+        expectedEffect: {
+            ...record.expectedEffect,
+            effects: record.expectedEffect.effects.map((effect) => ({ ...effect })),
+            sideEffects: record.expectedEffect.sideEffects.map((effect) => ({ ...effect })),
+        },
+    };
+}
 export class InMemoryInterventionLog {
     records = new Map();
     agentIndex = new Map();
     async log(record) {
-        this.records.set(record.id, { ...record });
+        this.records.set(record.id, cloneRecord(record));
         if (!this.agentIndex.has(record.agentId)) {
             this.agentIndex.set(record.agentId, []);
         }
@@ -17,7 +31,7 @@ export class InMemoryInterventionLog {
         for (let i = recordIds.length - 1; i >= start; i--) {
             const record = this.records.get(recordIds[i]);
             if (record) {
-                records.push({ ...record });
+                records.push(cloneRecord(record));
             }
         }
         return records;
@@ -35,7 +49,7 @@ export class InMemoryInterventionLog {
             const recordKeys = Object.keys(record.intervention);
             const overlap = interventionKeys.filter((k) => recordKeys.includes(k));
             if (overlap.length > 0) {
-                similar.push({ ...record });
+                similar.push(cloneRecord(record));
             }
         }
         similar.sort((a, b) => b.timestamp - a.timestamp);

package/dist/causal/stores/intervention-log.js.map

@@ -1 +1 @@
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package/dist/cogitator/index.d.ts

@@ -1,6 +1,6 @@
-export { createSpan, getTextContent } from './span-factory';
-export { type SandboxManager, type InitializerState, initializeMemory, initializeSandbox, initializeReflection, initializeGuardrails, initializeCostRouting, cleanupState, } from './initializers';
-export { buildInitialMessages, saveEntry, enrichMessagesWithInsights, addContextToMessages, } from './message-builder';
-export { executeTool, createToolMessage } from './tool-executor';
-export { streamChat, type StreamChatResult } from './streaming';
+export { createSpan, getTextContent } from './span-factory.js';
+export { type SandboxManager, type InitializerState, initializeMemory, initializeSandbox, initializeReflection, initializeGuardrails, initializeCostRouting, initializeSecurity, initializeContextManager, cleanupState, } from './initializers.js';
+export { buildInitialMessages, saveEntry, enrichMessagesWithInsights, addContextToMessages, } from './message-builder.js';
+export { executeTool, createToolMessage } from './tool-executor.js';
+export { streamChat, type StreamChatResult } from './streaming.js';
 //# sourceMappingURL=index.d.ts.map

package/dist/cogitator/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/cogitator/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC;AAC5D,OAAO,EACL,KAAK,cAAc,EACnB,KAAK,gBAAgB,EACrB,gBAAgB,EAChB,iBAAiB,EACjB,oBAAoB,EACpB,oBAAoB,EACpB,qBAAqB,EACrB,kBAAkB,EAClB,wBAAwB,EACxB,YAAY,GACb,MAAM,gBAAgB,CAAC;AACxB,OAAO,EACL,oBAAoB,EACpB,SAAS,EACT,0BAA0B,EAC1B,oBAAoB,GACrB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,WAAW,EAAE,iBAAiB,EAAE,MAAM,iBAAiB,CAAC;AACjE,OAAO,EAAE,UAAU,EAAE,KAAK,gBAAgB,EAAE,MAAM,aAAa,CAAC"}

package/dist/cogitator/index.js

@@ -1,6 +1,6 @@
-export { createSpan, getTextContent } from './span-factory';
-export { initializeMemory, initializeSandbox, initializeReflection, initializeGuardrails, initializeCostRouting, cleanupState, } from './initializers';
-export { buildInitialMessages, saveEntry, enrichMessagesWithInsights, addContextToMessages, } from './message-builder';
-export { executeTool, createToolMessage } from './tool-executor';
-export { streamChat } from './streaming';
+export { createSpan, getTextContent } from './span-factory.js';
+export { initializeMemory, initializeSandbox, initializeReflection, initializeGuardrails, initializeCostRouting, initializeSecurity, initializeContextManager, cleanupState, } from './initializers.js';
+export { buildInitialMessages, saveEntry, enrichMessagesWithInsights, addContextToMessages, } from './message-builder.js';
+export { executeTool, createToolMessage } from './tool-executor.js';
+export { streamChat } from './streaming.js';
 //# sourceMappingURL=index.js.map

package/dist/cogitator/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/cogitator/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC;AAC5D,OAAO,EAGL,gBAAgB,EAChB,iBAAiB,EACjB,oBAAoB,EACpB,oBAAoB,EACpB,qBAAqB,EACrB,kBAAkB,EAClB,wBAAwB,EACxB,YAAY,GACb,MAAM,gBAAgB,CAAC;AACxB,OAAO,EACL,oBAAoB,EACpB,SAAS,EACT,0BAA0B,EAC1B,oBAAoB,GACrB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,WAAW,EAAE,iBAAiB,EAAE,MAAM,iBAAiB,CAAC;AACjE,OAAO,EAAE,UAAU,EAAyB,MAAM,aAAa,CAAC"}

package/dist/cogitator/initializers.d.ts

@@ -1,11 +1,11 @@
 import type { CogitatorConfig, LLMBackend, MemoryAdapter, InsightStore } from '@cogitator-ai/types';
 import { ContextBuilder } from '@cogitator-ai/memory';
-import { ReflectionEngine } from '../reflection/index';
-import { ConstitutionalAI } from '../constitutional/index';
-import { CostAwareRouter } from '../cost-routing/index';
-import { PromptInjectionDetector } from '../security/index';
-import { ContextManager } from '../context/index';
-import type { Agent } from '../agent';
+import { ReflectionEngine } from '../reflection/index.js';
+import { ConstitutionalAI } from '../constitutional/index.js';
+import { CostAwareRouter } from '../cost-routing/index.js';
+import { PromptInjectionDetector } from '../security/index.js';
+import { ContextManager } from '../context/index.js';
+import type { Agent } from '../agent.js';
 export type SandboxManager = {
     initialize(): Promise<void>;
     execute(request: {

package/dist/cogitator/initializers.js

@@ -1,10 +1,10 @@
 import { InMemoryAdapter, RedisAdapter, PostgresAdapter, ContextBuilder, } from '@cogitator-ai/memory';
-import { getLogger } from '../logger';
-import { ReflectionEngine, InMemoryInsightStore } from '../reflection/index';
-import { ConstitutionalAI } from '../constitutional/index';
-import { CostAwareRouter } from '../cost-routing/index';
-import { PromptInjectionDetector } from '../security/index';
-import { ContextManager } from '../context/index';
+import { getLogger } from '../logger.js';
+import { ReflectionEngine, InMemoryInsightStore } from '../reflection/index.js';
+import { ConstitutionalAI } from '../constitutional/index.js';
+import { CostAwareRouter } from '../cost-routing/index.js';
+import { PromptInjectionDetector } from '../security/index.js';
+import { ContextManager } from '../context/index.js';
 export async function initializeMemory(config, state) {
     if (state.memoryInitialized || !config.memory?.adapter)
         return;
@@ -76,7 +76,7 @@ export async function initializeSandbox(config, state) {
         getLogger().warn('Sandbox initialization failed', {
             error: err instanceof Error ? err.message : String(err),
         });
-        state.sandboxInitialized = true;
+        state.sandboxInitialized = false;
     }
 }
 export async function initializeReflection(config, state, agent, getBackend) {

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