@codyswann/lisa 4.28.4 → 4.28.5

package/README.md

@@ -184,7 +184,9 @@ whenever a project seems to have stopped tracking upstream changes; a repo can
 otherwise sit silently stale for months.
 
 The same check covers a second, quieter gap. A package install runs apply in
-**postinstall-safe** mode (`--skip-git-check`), which deliberately skips every
+**postinstall-safe** mode — declared by the `LISA_POSTINSTALL=1` /
+`--postinstall-safe` marker every Lisa-written postinstall invocation carries —
+which deliberately skips every
 agent emit — Codex, Claude, agy, Copilot, OpenCode — and the Sonar integration,
 because those rewrite host-owned files. So no `bun install` at any version can
 reconcile `.codex/config.toml`; only a full `lisa apply .` does. Doctor now says

package/all/copy-overwrite/scripts/lisa-postinstall.mjs

@@ -152,7 +152,11 @@ export function runPostinstall(cwd = process.cwd(), env = process.env) {
   try {
     child = boundedSpawnSync(
       process.execPath,
-      [LISA_ENTRY, "--yes", "--skip-git-check", "."],
+      // `--postinstall-safe` is what selects the reduced apply, NOT
+      // `--skip-git-check` (CodySwannGT/lisa#3066). Both are needed here: an
+      // install has already dirtied package.json and the lockfile, and an
+      // install must not regenerate committed agent trees.
+      [LISA_ENTRY, "--yes", "--skip-git-check", "--postinstall-safe", "."],
       {
         cwd,
         env: { ...env, LISA_BOOTSTRAP: "1" },
@@ -209,7 +213,7 @@ export function runPostinstall(cwd = process.cwd(), env = process.env) {
       "  The error is printed above. Run `lisa doctor` for the recorded state, or",
       "  re-run the apply directly to see it in isolation:",
       "",
-      `      node ${LISA_ENTRY} --yes --skip-git-check .`,
+      `      node ${LISA_ENTRY} --yes --skip-git-check --postinstall-safe .`,
       "",
     ].join("\n")
   );

package/dist/cli/apply.d.ts

@@ -1,4 +1,24 @@
+import { type ApplyModeInputs } from "../core/apply-mode.js";
 import { type CLIOptions } from "./shared-options.js";
+/**
+ * The one-time notice for the retired meaning of `--skip-git-check`.
+ *
+ * Until CodySwannGT/lisa#3066 the flag also selected the reduced
+ * `postinstall-safe` subset. Every Lisa-written postinstall invocation now
+ * declares its own context instead, so those callers are unaffected — but a
+ * hand-written or copied command that passes only the flag gets a DIFFERENT
+ * apply than it used to, and a change of meaning that arrives silently is the
+ * defect restated rather than fixed.
+ *
+ * It warns rather than fails. A hard failure would abort the apply for every
+ * consumer whose `package.json` still carries the pre-fix hook text, turning a
+ * template-sync change into a fleet-wide stop on template updates — strictly
+ * worse than the bug. The hook migrates itself on the first apply, so the
+ * notice is also self-limiting.
+ * @param state - The resolved apply-mode inputs for this invocation.
+ * @returns The notice, or undefined when nothing changed for this caller.
+ */
+export declare function getRetiredSkipGitCheckNotice(state: ApplyModeInputs): string | undefined;
 /**
  * Apply Lisa to the given destination with the given options.
  *

package/dist/cli/apply.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"apply.d.ts","sourceRoot":"","sources":["../../src/cli/apply.ts"],"names":[],"mappings":"AAmBA,OAAO,EACL,KAAK,UAAU,EAGhB,MAAM,qBAAqB,CAAC;AAuN7B;;;;;;;;;;GAUG;AACH,wBAAsB,QAAQ,CAC5B,WAAW,EAAE,MAAM,GAAG,SAAS,EAC/B,OAAO,EAAE,UAAU,GAClB,OAAO,CAAC,IAAI,CAAC,CAqEf"}
+{"version":3,"file":"apply.d.ts","sourceRoot":"","sources":["../../src/cli/apply.ts"],"names":[],"mappings":"AAGA,OAAO,EACL,KAAK,eAAe,EAIrB,MAAM,uBAAuB,CAAC;AAgB/B,OAAO,EACL,KAAK,UAAU,EAGhB,MAAM,qBAAqB,CAAC;AAoO7B;;;;;;;;;;;;;;;;;GAiBG;AACH,wBAAgB,4BAA4B,CAC1C,KAAK,EAAE,eAAe,GACrB,MAAM,GAAG,SAAS,CAepB;AAmCD;;;;;;;;;;GAUG;AACH,wBAAsB,QAAQ,CAC5B,WAAW,EAAE,MAAM,GAAG,SAAS,EAC/B,OAAO,EAAE,UAAU,GAClB,OAAO,CAAC,IAAI,CAAC,CAwEf"}

package/dist/cli/apply.js

@@ -1,6 +1,6 @@
 import * as path from "node:path";
 import { fileURLToPath } from "node:url";
-import { resolveApplyMode } from "../core/apply-mode.js";
+import { LISA_POSTINSTALL_ENV, resolveApplyMode, resolvePostinstallDeclaration, } from "../core/apply-mode.js";
 import { recordSuccessfulApply } from "../core/apply-receipt.js";
 import { getBootstrapApplySkipNotice } from "../core/bootstrap-environment.js";
 import { ACCEPTED_HARNESS_INPUTS } from "../core/config.js";
@@ -32,7 +32,12 @@ function printUsageAndExit() {
     console.log("  -n, --dry-run     Show what would be done without making changes");
     console.log("  -y, --yes         Non-interactive mode (auto-accept defaults, overwrite on conflict)");
     console.log("  -v, --validate    Validate project compatibility without applying changes");
-    console.log("  --skip-git-check  Skip dirty git working directory check (for postinstall use)");
+    console.log("  --skip-git-check  Skip the dirty git working directory check. The apply still");
+    console.log("                    runs in full, including every agent emit.");
+    console.log("  --postinstall-safe");
+    console.log("                    Declare a package-manager install lifecycle: runs the reduced");
+    console.log("                    subset (no agent emit, no Sonar). Same as LISA_POSTINSTALL=1.");
+    console.log("  --full-apply      Run the FULL apply even inside a declared postinstall");
     console.log("  --refresh-templates [paths]");
     console.log("                    Let a non-interactive apply replace managed files it would");
     console.log("                    otherwise report as out of date. Optionally scope to a");
@@ -99,7 +104,8 @@ async function migrateLegacyHarnessIfNeeded(destDir, logger) {
  * @param parts.yesMode - Whether prompts auto-accept
  * @param parts.validateOnly - Whether to validate instead of apply
  * @param parts.skipGitCheck - Whether the dirty-tree prompt is skipped
- * @param parts.fullApply - Whether to run the full apply despite skipGitCheck
+ * @param parts.postinstall - Whether this apply declared a postinstall context
+ * @param parts.fullApply - Whether to force the full apply anyway
  * @param parts.refreshTemplates - Opted-in managed files, if any
  * @param parts.harness - Target harness for emitted artifacts
  * @returns The config to hand to Lisa
@@ -157,6 +163,64 @@ async function finalizeSuccessfulApply(parts) {
         stalePaths,
     });
 }
+/**
+ * The one-time notice for the retired meaning of `--skip-git-check`.
+ *
+ * Until CodySwannGT/lisa#3066 the flag also selected the reduced
+ * `postinstall-safe` subset. Every Lisa-written postinstall invocation now
+ * declares its own context instead, so those callers are unaffected — but a
+ * hand-written or copied command that passes only the flag gets a DIFFERENT
+ * apply than it used to, and a change of meaning that arrives silently is the
+ * defect restated rather than fixed.
+ *
+ * It warns rather than fails. A hard failure would abort the apply for every
+ * consumer whose `package.json` still carries the pre-fix hook text, turning a
+ * template-sync change into a fleet-wide stop on template updates — strictly
+ * worse than the bug. The hook migrates itself on the first apply, so the
+ * notice is also self-limiting.
+ * @param state - The resolved apply-mode inputs for this invocation.
+ * @returns The notice, or undefined when nothing changed for this caller.
+ */
+export function getRetiredSkipGitCheckNotice(state) {
+    if (!state.skipGitCheck ||
+        state.postinstall === true ||
+        state.fullApply === true) {
+        return undefined;
+    }
+    return ("--skip-git-check now waives ONLY the clean-tree check; this apply runs in " +
+        "FULL, including every agent emit and the Sonar integration. It used to " +
+        "also select the reduced postinstall-safe subset (CodySwannGT/lisa#3066). " +
+        `Pass --postinstall-safe (or set ${LISA_POSTINSTALL_ENV}=1) if you wanted ` +
+        "the reduced apply.");
+}
+/**
+ * Read this process's postinstall declaration.
+ *
+ * The environment spelling is not optional here: the declaration originates in
+ * the hook text inside a consumer's own `package.json`, and a shell command
+ * prefix is the only way that text can reach the process it launches.
+ * @param options - Parsed CLI options for this invocation.
+ * @returns True when this apply declared itself a package-manager install.
+ */
+function readPostinstallDeclaration(options) {
+    // Lisa's CLI is not a Nest service or a Lambda handler; it must introspect
+    // the environment its own postinstall hook hands it, and routing this one
+    // presence check through a config service would add indirection rather than
+    // type-safety.
+    // eslint-disable-next-line no-restricted-syntax -- see above
+    return resolvePostinstallDeclaration(options.postinstallSafe, process.env);
+}
+/**
+ * Announce the retired meaning of `--skip-git-check` when it applies.
+ * @param logger - Where the notice goes.
+ * @param state - The resolved apply-mode inputs for this invocation.
+ */
+function warnIfRetiredSkipGitCheck(logger, state) {
+    const notice = getRetiredSkipGitCheckNotice(state);
+    if (notice !== undefined) {
+        logger.warn(notice);
+    }
+}
 /**
  * Apply Lisa to the given destination with the given options.
  *
@@ -184,18 +248,21 @@ export async function runApply(destination, options) {
     const configFileExists = await projectConfigExists(destDir);
     const harness = resolveHarness(options.harness, projectConfig);
     const refreshTemplates = parseRefreshTemplates(options.refreshTemplates);
+    const postinstall = readPostinstallDeclaration(options);
     const config = buildApplyConfig({
         destDir,
         dryRun,
         yesMode,
         validateOnly,
         skipGitCheck: options.skipGitCheck ?? false,
+        postinstall,
         fullApply: options.fullApply ?? false,
         refreshTemplates,
         harness,
     });
     const deps = createDependencies(dryRun, yesMode, logger);
     const lisa = new Lisa(config, deps);
+    warnIfRetiredSkipGitCheck(logger, config);
     try {
         const result = options.validate
             ? await lisa.validate()

package/dist/cli/apply.js.map

@@ -1 +1 @@
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package/dist/cli/doctor-apply-freshness.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"doctor-apply-freshness.d.ts","sourceRoot":"","sources":["../../src/cli/doctor-apply-freshness.ts"],"names":[],"mappings":"AA4EA,wEAAwE;AACxE,UAAU,cAAc;IACtB,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,IAAI,GAAG,MAAM,GAAG,MAAM,CAAC;IAC/B,MAAM,EAAE,MAAM,CAAC;CAChB;AAoLD;;;;GAIG;AACH,wBAAsB,mBAAmB,CACvC,UAAU,EAAE,MAAM,GACjB,OAAO,CAAC,cAAc,CAAC,CA2BzB;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAgB,gBAAgB,IAAI,cAAc,CASjD"}
+{"version":3,"file":"doctor-apply-freshness.d.ts","sourceRoot":"","sources":["../../src/cli/doctor-apply-freshness.ts"],"names":[],"mappings":"AAkFA,wEAAwE;AACxE,UAAU,cAAc;IACtB,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,IAAI,GAAG,MAAM,GAAG,MAAM,CAAC;IAC/B,MAAM,EAAE,MAAM,CAAC;CAChB;AAoLD;;;;GAIG;AACH,wBAAsB,mBAAmB,CACvC,UAAU,EAAE,MAAM,GACjB,OAAO,CAAC,cAAc,CAAC,CA2BzB;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAgB,gBAAgB,IAAI,cAAc,CASjD"}

package/dist/cli/doctor-apply-freshness.js

@@ -15,9 +15,9 @@
  * version stamp means none has finished since that version. Both are reported
  * with the version and date, and with the command that reproduces the failure.
  *
- * A third silence lives in the same subsystem: postinstall-safe mode
- * (`--skip-git-check`, which is what a package manager runs) skips every agent
- * emit. That is deliberate — those emits rewrite host-owned files — but it
+ * A third silence lives in the same subsystem: postinstall-safe mode (what a
+ * package manager's install declares, via `--postinstall-safe` /
+ * `LISA_POSTINSTALL=1`) skips every agent emit. That is deliberate — those emits rewrite host-owned files — but it
  * means no `bun install` at any version can reconcile `.codex/config.toml`, so
  * repos on the newest Lisa still carry a deprecated `codex_hooks` key and an
  * audit reasonably but wrongly concluded "apply just hasn't re-run". Same shape
@@ -51,7 +51,13 @@ import { getPackageVersion } from "./version.js";
 const CHECK_NAME = "Templates applied by this Lisa version?";
 const YAML_CHECK_NAME = "YAML runtime usable?";
 const REAPPLY_COMMAND = "node node_modules/@codyswann/lisa/dist/index.js --yes --skip-git-check .";
-/** No `--skip-git-check`: the only form that performs the agent emits. */
+/**
+ * A plain operator apply, which performs the agent emits.
+ *
+ * `REAPPLY_COMMAND` above performs them too now — since
+ * CodySwannGT/lisa#3066 `--skip-git-check` waives only the clean-tree check —
+ * but this is the form to hand someone whose tree is already clean.
+ */
 const FULL_APPLY_COMMAND = "node node_modules/@codyswann/lisa/dist/index.js .";
 /**
  * How many stale paths to name inline before deferring to the receipt.

package/dist/cli/doctor-apply-freshness.js.map

@@ -1 +1 @@
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+{"version":3,"file":"doctor-apply-freshness.js","sourceRoot":"","sources":["../../src/cli/doctor-apply-freshness.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA0CG;AACH,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAClC,OAAO,EAAE,EAAE,EAAE,KAAK,EAAE,MAAM,QAAQ,CAAC;AAEnC,OAAO,EACL,0BAA0B,EAC1B,gBAAgB,GACjB,MAAM,0BAA0B,CAAC;AAClC,OAAO,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AAC5E,OAAO,EAAE,cAAc,EAAE,MAAM,wBAAwB,CAAC;AACxD,OAAO,EAAE,gBAAgB,EAAE,MAAM,kBAAkB,CAAC;AACpD,OAAO,EAAE,iBAAiB,EAAE,MAAM,cAAc,CAAC;AAEjD,MAAM,UAAU,GAAG,yCAAyC,CAAC;AAC7D,MAAM,eAAe,GAAG,sBAAsB,CAAC;AAC/C,MAAM,eAAe,GACnB,0EAA0E,CAAC;AAC7E;;;;;;GAMG;AACH,MAAM,kBAAkB,GAAG,mDAAmD,CAAC;AAC/E;;;;;;GAMG;AACH,MAAM,qBAAqB,GAAG,EAAE,CAAC;AACjC,6EAA6E;AAC7E,MAAM,mBAAmB,GACvB,qFAAqF;IACrF,uFAAuF;IACvF,oFAAoF;IACpF,iCAAiC,kBAAkB,oBAAoB,CAAC;AAe1E;;;GAGG;AACH,SAAS,oBAAoB;IAC3B,IAAI,CAAC;QACH,OAAO,iBAAiB,EAAE,CAAC;IAC7B,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC;AAED;;;;;;;;GAQG;AACH,KAAK,UAAU,YAAY,CAAC,UAAkB;IAC5C,MAAM,QAAQ,GAAG,MAAM,cAAc,CACnC,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE,cAAc,CAAC,CACtC,CAAC;IACF,IAAI,CAAC,QAAQ;QAAE,OAAO,KAAK,CAAC;IAC5B,OAAO,CACL,QAAQ,CAAC,YAAY,EAAE,CAAC,iBAAiB,CAAC,KAAK,SAAS;QACxD,QAAQ,CAAC,eAAe,EAAE,CAAC,iBAAiB,CAAC,KAAK,SAAS,CAC5D,CAAC;AACJ,CAAC;AAED;;;;GAIG;AACH,SAAS,cAAc,CAAC,YAAoB;IAC1C,MAAM,MAAM,GAAG,IAAI,IAAI,CAAC,YAAY,CAAC,CAAC;IACtC,OAAO,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC;QACnC,CAAC,CAAC,YAAY;QACd,CAAC,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;AACxC,CAAC;AAED;;;;GAIG;AACH,SAAS,YAAY,CAAC,SAAiB;IACrC,OAAO;QACL,IAAI,EAAE,UAAU;QAChB,MAAM,EAAE,MAAM;QACd,MAAM,EACJ,wEAAwE,SAAS,IAAI;YACrF,MAAM,0BAA0B,qDAAqD;YACrF,sCAAsC,eAAe,2BAA2B;YAChF,8EAA8E;YAC9E,2BAA2B;KAC9B,CAAC;AACJ,CAAC;AAED;;;;;;;;;;;;;;;;;;GAkBG;AACH,SAAS,kBAAkB,CAAC,UAA6B;IACvD,MAAM,KAAK,GAAG,UAAU,CAAC,KAAK,CAAC,CAAC,EAAE,qBAAqB,CAAC,CAAC;IACzD,MAAM,SAAS,GAAG,UAAU,CAAC,MAAM,GAAG,KAAK,CAAC,MAAM,CAAC;IACnD,MAAM,QAAQ,GACZ,SAAS,GAAG,CAAC;QACX,CAAC,CAAC,MAAM,SAAS,YAAY,0BAA0B,GAAG;QAC1D,CAAC,CAAC,EAAE,CAAC;IACT,OAAO,CACL,GAAG,UAAU,CAAC,MAAM,+DAA+D;QACnF,GAAG,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,QAAQ,mDAAmD;QACjF,qFAAqF;QACrF,wFAAwF;QACxF,uFAAuF;QACvF,0FAA0F;QAC1F,0BAA0B,CAC3B,CAAC;AACJ,CAAC;AAED;;;;;;;;;;;;GAYG;AACH,SAAS,sBAAsB,CAC7B,OAAqB,EACrB,QAAgB,EAChB,SAAiB;IAEjB,MAAM,QAAQ,GAAG;QACf,OAAO,CAAC,WAAW,CAAC,MAAM,GAAG,CAAC;YAC5B,CAAC,CAAC,kBAAkB,CAAC,OAAO,CAAC,WAAW,CAAC;YACzC,CAAC,CAAC,EAAE;QACN,OAAO,CAAC,UAAU,KAAK,kBAAkB,CAAC,CAAC,CAAC,mBAAmB,CAAC,CAAC,CAAC,EAAE;KACrE,CAAC,MAAM,CAAC,OAAO,CAAC,EAAE,CAAC,OAAO,KAAK,EAAE,CAAC,CAAC;IAEpC,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QAC1B,OAAO;YACL,IAAI,EAAE,UAAU;YAChB,MAAM,EAAE,IAAI;YACZ,MAAM,EAAE,+BAA+B,QAAQ,OAAO,SAAS,EAAE;SAClE,CAAC;IACJ,CAAC;IACD,OAAO;QACL,IAAI,EAAE,UAAU;QAChB,MAAM,EAAE,MAAM;QACd,MAAM,EAAE,QAAQ,QAAQ,eAAe,SAAS,KAAK,QAAQ,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE;KAC1E,CAAC;AACJ,CAAC;AAED;;;;;GAKG;AACH,KAAK,UAAU,cAAc,CAC3B,UAAkB,EAClB,SAAiB;IAEjB,MAAM,OAAO,GAAG,MAAM,gBAAgB,CAAC,UAAU,CAAC,CAAC;IACnD,IAAI,OAAO,KAAK,IAAI,EAAE,CAAC;QACrB,OAAO,YAAY,CAAC,SAAS,CAAC,CAAC;IACjC,CAAC;IAED,MAAM,QAAQ,GAAG,OAAO,CAAC,YAAY,CAAC;IACtC,MAAM,SAAS,GAAG,cAAc,CAAC,OAAO,CAAC,UAAU,CAAC,CAAC;IACrD,MAAM,SAAS,GAAG,KAAK,CAAC,QAAQ,CAAC,KAAK,IAAI,IAAI,KAAK,CAAC,SAAS,CAAC,KAAK,IAAI,CAAC;IACxE,MAAM,OAAO,GAAG,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,QAAQ,EAAE,SAAS,CAAC,CAAC,CAAC,CAAC,QAAQ,KAAK,SAAS,CAAC;IAE7E,IAAI,CAAC,OAAO,EAAE,CAAC;QACb,OAAO,sBAAsB,CAAC,OAAO,EAAE,QAAQ,EAAE,SAAS,CAAC,CAAC;IAC9D,CAAC;IAED,OAAO;QACL,IAAI,EAAE,UAAU;QAChB,MAAM,EAAE,MAAM;QACd,MAAM,EACJ,+DAA+D,QAAQ,GAAG;YAC1E,IAAI,SAAS,wBAAwB,SAAS,+BAA+B;YAC7E,yCAAyC,eAAe,yBAAyB;KACpF,CAAC;AACJ,CAAC;AAED;;;;GAIG;AACH,MAAM,CAAC,KAAK,UAAU,mBAAmB,CACvC,UAAkB;IAElB,IAAI,MAAM,gBAAgB,CAAC,UAAU,CAAC,EAAE,CAAC;QACvC,OAAO;YACL,IAAI,EAAE,UAAU;YAChB,MAAM,EAAE,IAAI;YACZ,MAAM,EACJ,mEAAmE;SACtE,CAAC;IACJ,CAAC;IACD,IAAI,CAAC,CAAC,MAAM,YAAY,CAAC,UAAU,CAAC,CAAC,EAAE,CAAC;QACtC,OAAO;YACL,IAAI,EAAE,UAAU;YAChB,MAAM,EAAE,IAAI;YACZ,MAAM,EAAE,GAAG,iBAAiB,oCAAoC;SACjE,CAAC;IACJ,CAAC;IAED,MAAM,SAAS,GAAG,oBAAoB,EAAE,CAAC;IACzC,IAAI,SAAS,KAAK,IAAI,EAAE,CAAC;QACvB,OAAO;YACL,IAAI,EAAE,UAAU;YAChB,MAAM,EAAE,MAAM;YACd,MAAM,EACJ,mEAAmE;SACtE,CAAC;IACJ,CAAC;IACD,OAAO,cAAc,CAAC,UAAU,EAAE,SAAS,CAAC,CAAC;AAC/C,CAAC;AAED;;;;;;;;;;;;;GAaG;AACH,MAAM,UAAU,gBAAgB;IAC9B,MAAM,OAAO,GAAG,gBAAgB,EAAE,CAAC;IACnC,OAAO,OAAO,KAAK,IAAI;QACrB,CAAC,CAAC;YACE,IAAI,EAAE,eAAe;YACrB,MAAM,EAAE,IAAI;YACZ,MAAM,EAAE,0CAA0C;SACnD;QACH,CAAC,CAAC,EAAE,IAAI,EAAE,eAAe,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,CAAC;AACjE,CAAC"}

package/dist/cli/shared-options.d.ts

@@ -12,11 +12,18 @@ export interface CLIOptions {
     validate?: boolean;
     skipGitCheck?: boolean;
     /**
-     * Run the FULL apply even with `--skip-git-check`.
+     * Declare this apply a package-manager install lifecycle.
      *
-     * The escape hatch from the conflation in CodySwannGT/lisa#3066: waiving the
-     * dirty-tree check otherwise selects the reduced `postinstall-safe` subset as
-     * a side effect, with no way to decline.
+     * The only thing that selects the reduced `postinstall-safe` subset. Every
+     * Lisa-written postinstall invocation carries it, in this spelling or as
+     * `LISA_POSTINSTALL=1` (CodySwannGT/lisa#3066).
+     */
+    postinstallSafe?: boolean;
+    /**
+     * Run the FULL apply even inside a declared postinstall.
+     *
+     * The override of last resort, for an operator forcing the complete apply
+     * from inside a lifecycle script.
      */
     fullApply?: boolean;
     /** Bare `--refresh-templates` yields true; with a value, the raw path list. */

package/dist/cli/shared-options.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"shared-options.d.ts","sourceRoot":"","sources":["../../src/cli/shared-options.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,OAAO,EAAwB,MAAM,WAAW,CAAC;AAC/D,OAAO,KAAK,EAAE,OAAO,EAAE,gBAAgB,EAAE,MAAM,mBAAmB,CAAC;AAGnE,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,iBAAiB,CAAC;AAExD,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AAOzD;;;GAGG;AACH,MAAM,WAAW,UAAU;IACzB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,GAAG,CAAC,EAAE,OAAO,CAAC;IACd,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,YAAY,CAAC,EAAE,OAAO,CAAC;IACvB;;;;;;OAMG;IACH,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,+EAA+E;IAC/E,gBAAgB,CAAC,EAAE,OAAO,GAAG,MAAM,CAAC;IACpC,OAAO,CAAC,EAAE,OAAO,CAAC;CACnB;AAED;;;;GAIG;AACH,wBAAgB,qBAAqB,CACnC,KAAK,EAAE,OAAO,GAAG,MAAM,GAAG,SAAS,GAClC,gBAAgB,GAAG,SAAS,CAW9B;AAED;;;;;;GAMG;AACH,wBAAgB,eAAe,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAStD;AAED;;;;;GAKG;AACH,wBAAgB,gBAAgB,CAAC,OAAO,EAAE,OAAO,GAAG,OAAO,CAoC1D;AAED;;;;;;GAMG;AACH,wBAAgB,kBAAkB,CAChC,MAAM,EAAE,OAAO,EACf,OAAO,EAAE,OAAO,EAChB,MAAM,EAAE,aAAa,GACpB,gBAAgB,CAYlB"}
+{"version":3,"file":"shared-options.d.ts","sourceRoot":"","sources":["../../src/cli/shared-options.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,OAAO,EAAwB,MAAM,WAAW,CAAC;AAC/D,OAAO,KAAK,EAAE,OAAO,EAAE,gBAAgB,EAAE,MAAM,mBAAmB,CAAC;AAGnE,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,iBAAiB,CAAC;AAExD,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AAOzD;;;GAGG;AACH,MAAM,WAAW,UAAU;IACzB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,GAAG,CAAC,EAAE,OAAO,CAAC;IACd,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,YAAY,CAAC,EAAE,OAAO,CAAC;IACvB;;;;;;OAMG;IACH,eAAe,CAAC,EAAE,OAAO,CAAC;IAC1B;;;;;OAKG;IACH,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,+EAA+E;IAC/E,gBAAgB,CAAC,EAAE,OAAO,GAAG,MAAM,CAAC;IACpC,OAAO,CAAC,EAAE,OAAO,CAAC;CACnB;AAED;;;;GAIG;AACH,wBAAgB,qBAAqB,CACnC,KAAK,EAAE,OAAO,GAAG,MAAM,GAAG,SAAS,GAClC,gBAAgB,GAAG,SAAS,CAW9B;AAED;;;;;;GAMG;AACH,wBAAgB,eAAe,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAStD;AAED;;;;;GAKG;AACH,wBAAgB,gBAAgB,CAAC,OAAO,EAAE,OAAO,GAAG,OAAO,CAuC1D;AAED;;;;;;GAMG;AACH,wBAAgB,kBAAkB,CAChC,MAAM,EAAE,OAAO,EACf,OAAO,EAAE,OAAO,EAChB,MAAM,EAAE,aAAa,GACpB,gBAAgB,CAYlB"}

package/dist/cli/shared-options.js

@@ -52,14 +52,14 @@ export function addSharedOptions(command) {
         .option("-n, --dry-run", "Show what would be done without making changes")
         .option("-y, --yes", "Non-interactive mode (auto-accept defaults, overwrite on conflict)")
         .option("-v, --validate", "Validate project compatibility without applying changes")
-        .option("--skip-git-check", "Skip dirty git working directory check (for postinstall use). " +
-        "NOTE: on its own this also selects the reduced postinstall-safe apply, " +
-        "which skips every agent emit and the Sonar integration. Add --full-apply " +
-        "to waive the check without reducing the apply.")
-        .option("--full-apply", "Run the FULL apply even with --skip-git-check. Without this, waiving the " +
-        "dirty-tree check also selects the reduced postinstall-safe subset, so an " +
-        "automated caller that only needed a dirty tree silently gets no agent " +
-        "emits (CodySwannGT/lisa#3066).")
+        .option("--skip-git-check", "Skip the dirty git working directory check. Means only that: the apply " +
+        "still runs in full, including every agent emit (CodySwannGT/lisa#3066).")
+        .option("--postinstall-safe", "Declare this apply a package-manager install lifecycle, which runs the " +
+        "reduced postinstall-safe subset: no agent emit (Codex, Claude, agy, " +
+        "Copilot, OpenCode) and no Sonar integration, so an install never " +
+        "regenerates committed agent trees. Equivalent to LISA_POSTINSTALL=1.")
+        .option("--full-apply", "Run the FULL apply even inside a declared postinstall. Overrides " +
+        "--postinstall-safe and LISA_POSTINSTALL=1.")
         .option("--refresh-templates [paths]", "Let a non-interactive apply replace managed files it would otherwise report as out of date. " +
         "Optionally scope to a comma-separated list of repo-relative paths " +
         "(e.g. --refresh-templates=scripts/lisa-hooks). Backs up before replacing.")

package/dist/cli/shared-options.js.map

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package/dist/core/apply-mode.d.ts

@@ -20,42 +20,78 @@
  * fleet. A silent gap is bad; a silent gap with an instrument attesting to it
  * is worse.
  *
- * ## What did NOT change, deliberately
- *
- * `--skip-git-check` still selects `postinstall-safe` by default. That is the
- * conflation CodySwannGT/lisa#3066 reports, and it is preserved here rather
- * than separated, because separating it safely needs a reliable "this is a
- * postinstall" signal and there is not one:
- *
- * - npm sets `npm_lifecycle_event=postinstall` during a postinstall.
- * - **bun sets neither `npm_lifecycle_event` nor `npm_command`**, while still
- *   running the script. Measured, not assumed.
- *
- * So keying the mode off the lifecycle environment would classify every
- * bun-based project's postinstall as a full apply, and a full apply under
- * `bun install` regenerates agent trees — precisely what the reduced mode
- * exists to prevent. The alternative, marking the hook command itself, means
- * changing text that `ensure-lisa-postinstall` recognises by exact match and
- * that already lives in every consumer's `package.json`; that carries the
- * two-channel hazard of CodySwannGT/lisa#3050, where a recogniser miss appends
- * a second invocation rather than failing.
- *
- * What this module adds instead is an explicit opt-out for the caller who
- * genuinely wants both — a dirty tree AND the full apply — which is the case
- * the fleet-update flow needs and the only case the conflation actually
- * blocked.
+ * ## The conflation, and how it is separated
+ *
+ * `--skip-git-check` used to carry two unrelated propositions, and selecting
+ * the reduced subset was the one nothing in its name suggested
+ * (CodySwannGT/lisa#3066). They are separated here because they are scoped to
+ * different things:
+ *
+ * | proposition | scoped to | expressed by |
+ * |---|---|---|
+ * | "do not require a clean working tree" | the INVOCATION — the caller knows its own tree | `--skip-git-check` |
+ * | "run the reduced subset" | the CONTEXT — is this a package manager's install lifecycle | `--postinstall-safe` / `LISA_POSTINSTALL=1` |
+ *
+ * `skipGitCheck` is accepted by {@link ApplyModeInputs} and deliberately read
+ * by nothing in this module. Keeping the field makes the separation directly
+ * assertable and makes any future re-reading of it a visible diff rather than
+ * a silent regression.
+ *
+ * ## Why the context is DECLARED and not detected
+ *
+ * Lisa already has an ambient detector — `isRunningAsLifecycleScript()`, which
+ * reads `npm_package_json`. It cannot decide this, and the reason is measured
+ * rather than assumed:
+ *
+ * - `npm install` postinstall sets `npm_lifecycle_event=postinstall`.
+ * - **`bun install` postinstall sets neither `npm_lifecycle_event` nor
+ *   `npm_command`** while still running the script; it does set
+ *   `npm_config_user_agent` and `npm_package_json`.
+ * - Every one of those leaks into the descendants of ANY `bun run` / `npm run`
+ *   — including the shell an operator, a CI job, or an agent runs an apply
+ *   from.
+ *
+ * A detector keyed on the first would classify every bun-based project's
+ * postinstall as a full apply, and a full apply under `bun install`
+ * regenerates agent trees — exactly what the reduced mode exists to prevent. A
+ * detector keyed on the second over-fires instead, handing the reduced subset
+ * back to the very callers this fixes, silently. A declaration can do neither:
+ * only Lisa's own postinstall invocations carry it.
+ *
+ * The declaration is also concrete at the moment the decision is taken — a
+ * plain string already present in the process, never a deferred or
+ * lazily-resolved value that could still be token-shaped when read.
  * @module core/apply-mode
  */
 import type { ApplyMode } from "./apply-receipt.js";
+/** Environment variable a postinstall invocation sets to declare itself. */
+export declare const LISA_POSTINSTALL_ENV = "LISA_POSTINSTALL";
+/** The value {@link LISA_POSTINSTALL_ENV} must hold to count as declared. */
+export declare const LISA_POSTINSTALL_ENV_VALUE = "1";
 /** The subset of config this decision reads. */
 export interface ApplyModeInputs {
-    /** Whether the dirty-tree check was waived. */
+    /**
+     * Whether the dirty-tree check was waived.
+     *
+     * Accepted and DELIBERATELY UNREAD. This field used to decide the mode, and
+     * that conflation is the defect this module resolves; it stays in the shape
+     * so the separation can be asserted directly and so re-reading it would show
+     * up as a diff here rather than as behaviour nobody notices.
+     */
     readonly skipGitCheck: boolean;
     /**
-     * Explicit request for the full apply even with the git check waived.
+     * Whether this apply declared itself a package-manager install lifecycle.
+     *
+     * Set by `--postinstall-safe` or `LISA_POSTINSTALL=1`, which every
+     * Lisa-written postinstall invocation carries. This is the only input that
+     * selects the reduced subset.
+     */
+    readonly postinstall?: boolean;
+    /**
+     * Explicit request for the full apply even inside a declared postinstall.
      *
-     * The escape hatch from the conflation. Absent or false preserves today's
-     * behaviour exactly, so no existing caller changes.
+     * The override of last resort, for an operator who means to force the
+     * complete apply from inside a lifecycle script.
      */
     readonly fullApply?: boolean;
 }
@@ -63,7 +99,7 @@ export interface ApplyModeInputs {
  * Resolves the mode this apply runs in.
  *
  * Every consumer — agent emits, `package.json` protection, and the receipt —
- * MUST read this rather than re-deriving from `skipGitCheck`, so the recorded
+ * MUST read this rather than re-deriving from any single flag, so the recorded
  * mode can never describe work the run did not do.
  * @param config - The apply's resolved configuration.
  * @returns `"postinstall-safe"` for the reduced subset, otherwise `"full"`.
@@ -79,4 +115,19 @@ export declare function resolveApplyMode(config: ApplyModeInputs): ApplyMode;
  * @returns True when the reduced `postinstall-safe` subset applies.
  */
 export declare function isPostinstallSafeApply(config: ApplyModeInputs): boolean;
+/**
+ * Resolve the postinstall declaration from the CLI flag and the environment.
+ *
+ * Two spellings, one meaning. The flag is what Lisa's own spawned invocations
+ * pass, because a spawned child's environment is sanitised of package-manager
+ * variables and a flag survives that; the environment variable is what the
+ * hook text in a consumer's `package.json` carries, because prefixing an
+ * assignment leaves the command tail untouched and therefore leaves the
+ * recogniser in `ensure-lisa-postinstall` matching both shapes with a single
+ * added alternative.
+ * @param flag - Value of `--postinstall-safe`, if passed.
+ * @param env - Environment to read {@link LISA_POSTINSTALL_ENV} from.
+ * @returns True when this apply declared itself a postinstall.
+ */
+export declare function resolvePostinstallDeclaration(flag: boolean | undefined, env: Readonly<Record<string, string | undefined>>): boolean;
 //# sourceMappingURL=apply-mode.d.ts.map

package/dist/core/apply-mode.d.ts.map

@@ -1 +1 @@
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package/dist/core/apply-mode.js

@@ -1,8 +1,12 @@
+/** Environment variable a postinstall invocation sets to declare itself. */
+export const LISA_POSTINSTALL_ENV = "LISA_POSTINSTALL";
+/** The value {@link LISA_POSTINSTALL_ENV} must hold to count as declared. */
+export const LISA_POSTINSTALL_ENV_VALUE = "1";
 /**
  * Resolves the mode this apply runs in.
  *
  * Every consumer — agent emits, `package.json` protection, and the receipt —
- * MUST read this rather than re-deriving from `skipGitCheck`, so the recorded
+ * MUST read this rather than re-deriving from any single flag, so the recorded
  * mode can never describe work the run did not do.
  * @param config - The apply's resolved configuration.
  * @returns `"postinstall-safe"` for the reduced subset, otherwise `"full"`.
@@ -11,7 +15,7 @@ export function resolveApplyMode(config) {
     if (config.fullApply === true) {
         return "full";
     }
-    return config.skipGitCheck ? "postinstall-safe" : "full";
+    return config.postinstall === true ? "postinstall-safe" : "full";
 }
 /**
  * Whether this apply runs the reduced subset.
@@ -25,4 +29,21 @@ export function resolveApplyMode(config) {
 export function isPostinstallSafeApply(config) {
     return resolveApplyMode(config) === "postinstall-safe";
 }
+/**
+ * Resolve the postinstall declaration from the CLI flag and the environment.
+ *
+ * Two spellings, one meaning. The flag is what Lisa's own spawned invocations
+ * pass, because a spawned child's environment is sanitised of package-manager
+ * variables and a flag survives that; the environment variable is what the
+ * hook text in a consumer's `package.json` carries, because prefixing an
+ * assignment leaves the command tail untouched and therefore leaves the
+ * recogniser in `ensure-lisa-postinstall` matching both shapes with a single
+ * added alternative.
+ * @param flag - Value of `--postinstall-safe`, if passed.
+ * @param env - Environment to read {@link LISA_POSTINSTALL_ENV} from.
+ * @returns True when this apply declared itself a postinstall.
+ */
+export function resolvePostinstallDeclaration(flag, env) {
+    return (flag === true || env[LISA_POSTINSTALL_ENV] === LISA_POSTINSTALL_ENV_VALUE);
+}
 //# sourceMappingURL=apply-mode.js.map

package/dist/core/apply-mode.js.map

@@ -1 +1 @@
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+{"version":3,"file":"apply-mode.js","sourceRoot":"","sources":["../../src/core/apply-mode.ts"],"names":[],"mappings":"AAmEA,4EAA4E;AAC5E,MAAM,CAAC,MAAM,oBAAoB,GAAG,kBAAkB,CAAC;AAEvD,6EAA6E;AAC7E,MAAM,CAAC,MAAM,0BAA0B,GAAG,GAAG,CAAC;AA8B9C;;;;;;;;GAQG;AACH,MAAM,UAAU,gBAAgB,CAAC,MAAuB;IACtD,IAAI,MAAM,CAAC,SAAS,KAAK,IAAI,EAAE,CAAC;QAC9B,OAAO,MAAM,CAAC;IAChB,CAAC;IACD,OAAO,MAAM,CAAC,WAAW,KAAK,IAAI,CAAC,CAAC,CAAC,kBAAkB,CAAC,CAAC,CAAC,MAAM,CAAC;AACnE,CAAC;AAED;;;;;;;;GAQG;AACH,MAAM,UAAU,sBAAsB,CAAC,MAAuB;IAC5D,OAAO,gBAAgB,CAAC,MAAM,CAAC,KAAK,kBAAkB,CAAC;AACzD,CAAC;AAED;;;;;;;;;;;;;GAaG;AACH,MAAM,UAAU,6BAA6B,CAC3C,IAAyB,EACzB,GAAiD;IAEjD,OAAO,CACL,IAAI,KAAK,IAAI,IAAI,GAAG,CAAC,oBAAoB,CAAC,KAAK,0BAA0B,CAC1E,CAAC;AACJ,CAAC"}

package/dist/core/apply-receipt.d.ts

@@ -8,7 +8,11 @@ export declare const APPLY_RECEIPT_SCHEMA_VERSION = 1;
 /**
  * How complete the recorded apply was.
  *
- * `postinstall-safe` is the `--skip-git-check` path a package manager runs. It
+ * `postinstall-safe` is the path a package manager's install runs, selected by
+ * the `--postinstall-safe` / `LISA_POSTINSTALL=1` declaration every
+ * Lisa-written postinstall invocation carries. (It used to be selected by
+ * `--skip-git-check`, which also meant something else entirely — see
+ * `core/apply-mode` and CodySwannGT/lisa#3066.) It
  * deliberately skips every agent emit (Codex, Claude, agy, Copilot, OpenCode)
  * and the Sonar integration, because those rewrite host-owned files that must
  * not change under an install. That is the right behaviour and the wrong

package/dist/core/apply-receipt.d.ts.map

@@ -1 +1 @@
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package/dist/core/apply-receipt.js.map

@@ -1 +1 @@
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