@codyswann/lisa 3.6.2 → 3.8.0

package/dist/cli/doctor-worktree-hygiene.d.ts

@@ -0,0 +1,40 @@
+import type { DoctorCheck } from "./doctor.js";
+/**
+ * Worktree count above which doctor warns.
+ *
+ * Not derived from a failure rate — the measurements in CodySwannGT/lisa#2490
+ * varied worktree count and machine load together (27 worktrees at load ~50,
+ * 38 at load ~115), so they cannot isolate a count at which suites start
+ * failing. The threshold is grounded in the one quantity that IS deterministic:
+ * crawl amplification. Each worktree is a full checkout, so every tool that
+ * globs from the repo root sees the project's own source multiplied by the
+ * worktree count. Measured in this repo at 20 worktrees: 14,389 `.ts` files
+ * under `.claude/worktrees` against 1,023 in the project itself — 14x. Ten is
+ * the point past which the accumulated checkouts dominate the tree by an order
+ * of magnitude, which is early enough to act on and late enough that ordinary
+ * parallel work does not trip it.
+ */
+export declare const WORKTREE_COUNT_WARN_THRESHOLD = 10;
+/**
+ * Report how many agent worktrees have accumulated under this checkout.
+ *
+ * Agent worktrees are the root enabler behind the environmental unit-suite
+ * failures in CodySwannGT/lisa#2490: they are never garbage-collected, each one
+ * is a full checkout, and the resulting tree is what every crawler in the repo
+ * has to walk past. The same cause is documented downstream three separate ways
+ * in `propswap/frontend` (watchman crawl cost, jest's find-crawler overflowing
+ * V8's max string length, an unanchored Metro blockList pattern) — all of which
+ * only appeared once enough worktrees had piled up.
+ *
+ * Read-only and warn-only by design. Doctor reports the count and names the
+ * repair; it never removes a worktree itself, because the operator is the only
+ * one who knows whether an idle-looking checkout still holds work.
+ *
+ * Running from INSIDE a worktree naturally reports clean: the roots live in the
+ * primary checkout, so a worktree has none of its own. That matches how
+ * `isInsideWorktree` conditions the vitest and jest exclusions.
+ * @param targetPath - Project path to inspect
+ * @returns Doctor check result
+ */
+export declare function checkWorktreeHygiene(targetPath: string): Promise<DoctorCheck>;
+//# sourceMappingURL=doctor-worktree-hygiene.d.ts.map

package/dist/cli/doctor-worktree-hygiene.d.ts.map

@@ -0,0 +1 @@
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package/dist/cli/doctor-worktree-hygiene.js

@@ -0,0 +1,123 @@
+import { readdir } from "node:fs/promises";
+import * as path from "node:path";
+import { WORKTREE_ROOTS } from "../configs/worktrees.js";
+const WORKTREE_HYGIENE_CHECK_NAME = "Agent worktree hygiene?";
+/**
+ * Worktree count above which doctor warns.
+ *
+ * Not derived from a failure rate — the measurements in CodySwannGT/lisa#2490
+ * varied worktree count and machine load together (27 worktrees at load ~50,
+ * 38 at load ~115), so they cannot isolate a count at which suites start
+ * failing. The threshold is grounded in the one quantity that IS deterministic:
+ * crawl amplification. Each worktree is a full checkout, so every tool that
+ * globs from the repo root sees the project's own source multiplied by the
+ * worktree count. Measured in this repo at 20 worktrees: 14,389 `.ts` files
+ * under `.claude/worktrees` against 1,023 in the project itself — 14x. Ten is
+ * the point past which the accumulated checkouts dominate the tree by an order
+ * of magnitude, which is early enough to act on and late enough that ordinary
+ * parallel work does not trip it.
+ */
+export const WORKTREE_COUNT_WARN_THRESHOLD = 10;
+/**
+ * Report how many agent worktrees have accumulated under this checkout.
+ *
+ * Agent worktrees are the root enabler behind the environmental unit-suite
+ * failures in CodySwannGT/lisa#2490: they are never garbage-collected, each one
+ * is a full checkout, and the resulting tree is what every crawler in the repo
+ * has to walk past. The same cause is documented downstream three separate ways
+ * in `propswap/frontend` (watchman crawl cost, jest's find-crawler overflowing
+ * V8's max string length, an unanchored Metro blockList pattern) — all of which
+ * only appeared once enough worktrees had piled up.
+ *
+ * Read-only and warn-only by design. Doctor reports the count and names the
+ * repair; it never removes a worktree itself, because the operator is the only
+ * one who knows whether an idle-looking checkout still holds work.
+ *
+ * Running from INSIDE a worktree naturally reports clean: the roots live in the
+ * primary checkout, so a worktree has none of its own. That matches how
+ * `isInsideWorktree` conditions the vitest and jest exclusions.
+ * @param targetPath - Project path to inspect
+ * @returns Doctor check result
+ */
+export async function checkWorktreeHygiene(targetPath) {
+    const inspections = await Promise.all(WORKTREE_ROOTS.map(root => inspectRoot(targetPath, root)));
+    const total = inspections.reduce((sum, inspection) => sum + inspection.count, 0);
+    const uninspectable = inspections.flatMap(inspection => inspection.uninspectable === undefined ? [] : [inspection.uninspectable]);
+    if (uninspectable.length > 0) {
+        return {
+            name: WORKTREE_HYGIENE_CHECK_NAME,
+            status: "warn",
+            detail: `Could not inspect worktree root(s): ${uninspectable.join(", ")}. ` +
+                `Counted ${total} agent worktrees in the roots that were readable`,
+        };
+    }
+    if (total === 0) {
+        return {
+            name: WORKTREE_HYGIENE_CHECK_NAME,
+            status: "ok",
+            detail: `No agent worktrees under ${WORKTREE_ROOTS.join(" or ")}`,
+        };
+    }
+    if (total <= WORKTREE_COUNT_WARN_THRESHOLD) {
+        return {
+            name: WORKTREE_HYGIENE_CHECK_NAME,
+            status: "ok",
+            detail: `${describeCount(total)} under ${WORKTREE_ROOTS.join(" and ")} (threshold ${WORKTREE_COUNT_WARN_THRESHOLD})`,
+        };
+    }
+    return {
+        name: WORKTREE_HYGIENE_CHECK_NAME,
+        status: "warn",
+        detail: `${describeCount(total)} under ${WORKTREE_ROOTS.join(" and ")}, ` +
+            `over the threshold of ${WORKTREE_COUNT_WARN_THRESHOLD}. ` +
+            "Each one is a full checkout that every file crawler walks past, which is " +
+            "what makes unit suites time out from ambient load rather than defects. " +
+            "Review them with `git worktree list`, retire the finished ones with " +
+            "`git worktree remove <path>` — which refuses a worktree with uncommitted " +
+            "changes, so it cannot discard work — then clear stale registrations with " +
+            "`git worktree prune` (CodySwannGT/lisa#2490)",
+    };
+}
+/**
+ * Count worktree directories under one repo-relative root.
+ * @param targetPath - Project path to inspect
+ * @param root - Repo-relative worktree root
+ * @returns Count for the root, or the root name when it could not be read
+ */
+async function inspectRoot(targetPath, root) {
+    try {
+        const entries = await readdir(path.join(targetPath, root), {
+            withFileTypes: true,
+        });
+        return {
+            count: entries.filter(entry => entry.isDirectory()).length,
+        };
+    }
+    catch (error) {
+        // A missing root is the normal case — most checkouts have neither, and a
+        // worktree checkout has neither of its own. Anything else (a file where the
+        // directory belongs, a permissions failure) is reported rather than counted
+        // as clean, so the check never reports hygiene it did not verify.
+        return isMissing(error) ? { count: 0 } : { count: 0, uninspectable: root };
+    }
+}
+/**
+ * Report whether a readdir failure means the path simply does not exist.
+ * @param error - Error thrown by readdir
+ * @returns True when the root is absent
+ */
+function isMissing(error) {
+    return (typeof error === "object" &&
+        error !== null &&
+        "code" in error &&
+        error.code === "ENOENT");
+}
+/**
+ * Render a worktree count with correct pluralization.
+ * @param total - Number of worktrees counted
+ * @returns Human-readable count phrase
+ */
+function describeCount(total) {
+    return `${total} agent worktree${total === 1 ? "" : "s"}`;
+}
+//# sourceMappingURL=doctor-worktree-hygiene.js.map

package/dist/cli/doctor-worktree-hygiene.js.map

@@ -0,0 +1 @@
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package/dist/cli/doctor.d.ts.map

@@ -1 +1 @@
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package/dist/cli/doctor.js

@@ -17,6 +17,7 @@ import { checkLisaOwnedArtifacts } from "./doctor-lisa-owned-artifacts.js";
 import { checkLegacyMonitorThresholds } from "./doctor-monitor-thresholds.js";
 import { checkRepositoryReadiness } from "./doctor-readiness.js";
 import { checkWorkerEpoch } from "./doctor-worker-epoch.js";
+import { checkWorktreeHygiene } from "./doctor-worktree-hygiene.js";
 import { STARTERS } from "./starters.js";
 import { runUpdateCheck } from "./update-check.js";
 const VERSION_CHECK_NAME = "Lisa version current?";
@@ -277,6 +278,11 @@ export async function runDoctor(targetPath, options, dependencies = {}) {
         await checkLearningsMergeDriver(resolvedTarget),
         await checkWorkerEpoch(resolvedTarget),
         checkLegacyCodexOverlay(resolvedTarget),
+        // Environment hygiene rather than project config: accumulated agent
+        // worktrees are what make unrelated unit suites time out under ambient
+        // load, so an operator debugging a red suite needs the count in front of
+        // them (CodySwannGT/lisa#2490).
+        await checkWorktreeHygiene(resolvedTarget),
         await checkStarterHealth(deps, options.offline === true),
         checkWiki(resolvedTarget),
         ...(options.readiness === true

package/dist/cli/doctor.js.map

@@ -1 +1 @@
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package/dist/core/upstream-evidence-manifest.d.ts.map

@@ -1 +1 @@
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package/dist/core/upstream-evidence-manifest.js

@@ -100,7 +100,7 @@ export const UPSTREAM_EVIDENCE_MANIFEST = Object.freeze({
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@@ -182,7 +182,7 @@ export const UPSTREAM_EVIDENCE_MANIFEST = Object.freeze({
     "nestjs/create-only/.github/k6/thresholds/normal.json": "1842cf0b617380ce641781589b4084b03aac1beeb4803a696b3ae6329710ad44",
     "nestjs/create-only/.github/k6/thresholds/relaxed.json": "350c18b2c588fd628db8a6e82fc5c0b3ffc8a09f1c89b64d1f530350bc64a9ca",
     "nestjs/create-only/.github/k6/thresholds/strict.json": "e121ec72de4596b95c013a8c71f03653bcdf057cf7f8d1fec6f0e13c1381867f",
-    "nestjs/create-only/.github/required-checks.json": "7d9af483f6150e2f7281f008dd08b56590721f3c86f6b1a3b7548f7838a0137f",
+    "nestjs/create-only/.github/required-checks.json": "6d40f9e3e89e1a7f533f6a995e1b9e5cc2fa089693b0cfbd8e8f883ae200589a",
     "nestjs/create-only/.github/workflows/ci.yml": "0985668e6d0478f1993bed8ccd398601d8e73376afd8775e1269ae129418152e",
     "nestjs/create-only/.github/workflows/deploy.yml": "78abfa87639cb7506418dd34387963a0557614933d823e6fa0413395166b945b",
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@@ -370,7 +370,7 @@ export const UPSTREAM_EVIDENCE_MANIFEST = Object.freeze({
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     "plugins/src/base/rules/eager/empirical-inquiry.md": "67aa64ba3ecc4f3cd761111d2562662e0a2acf7892703b14ec83f7f7b073e670",
     "plugins/src/base/rules/eager/factory-model.md": "dee39b4276926ee27a2614bf26b985fd33bb3d115313fa6e2893de12da13ed7c",
-    "plugins/src/base/rules/eager/falsifiable-checks.md": "7cfe0ec4a4c7f7b133580ee4b9004b764a99bd98e9d39856c587c8ad45fda920",
+    "plugins/src/base/rules/eager/falsifiable-checks.md": "b4ecd8196fa2ba0dc7c128c5f2f986a36840aaa5f78d5b739f6fc2a67404df00",
     "plugins/src/base/rules/eager/history-audit.md": "e2365e3fb28230c643e943d26688a93906afa68e3e1355d3e86d4b22ab3db559",
     "plugins/src/base/rules/eager/integration-access-layer.md": "e5675ec414d0dcfbbf7a29912f39ea5fb02747aa4e6045493e636cba1e635eb7",
     "plugins/src/base/rules/eager/intent-routing.md": "a2ef2397a98fb3d991fcfb39b669e289c1e2b697191cbeb6c071d71eca836207",
@@ -414,13 +414,13 @@ export const UPSTREAM_EVIDENCE_MANIFEST = Object.freeze({
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     "plugins/src/base/rules/reference/dependency-internalization-kit.md": "8c8e9bddbe2165905c3919ae9dd3d131b557cf9c7eb370393dfa85827076c73b",
     "plugins/src/base/rules/reference/dependency-trust-classes.md": "82216b80d4807e0ad302d04924032cc6a7a95b26f72ea853e378572a5c31821c",
-    "plugins/src/base/rules/reference/derived-branch-plan.md": "325245c8a40042f35bd83fabc3d6752724fbb2789d6fddade0e5191442846127",
+    "plugins/src/base/rules/reference/derived-branch-plan.md": "728ef5366d8d2645cce47e4544a7c175d7a7ba8bd6f7768ddb21e4415d53f4ad",
     "plugins/src/base/rules/reference/design-source-of-truth.md": "38f477cb0703627ac5daf561a9a1c42bd41be6d20113aba22f30d5e47d573dcf",
     "plugins/src/base/rules/reference/do-it-now.md": "46fdcc335e115d0f387af398789f443ef8dd3ab17de5f7d95120c31f913a8fce",
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     "plugins/src/base/rules/reference/empirical-inquiry.md": "8cb166ab9eff4eb30287822a4d7843f76884d70d683d7c61d6a7ffd4ff9f7159",
     "plugins/src/base/rules/reference/factory-model.md": "b28a2ea4df7c33390111667a2807d9003cf8c9a14829f6fb0dbc929b05bfed3a",
-    "plugins/src/base/rules/reference/falsifiable-checks.md": "284eccdf5b0fa29d2927a24ab25ad4aed34b0798e4fdf2e8e7d6fd1b80e3236b",
+    "plugins/src/base/rules/reference/falsifiable-checks.md": "a0d7c3be070937042d17e98bdb955b87f30be5d298be91e33c1e6883cae2635d",
     "plugins/src/base/rules/reference/history-audit.md": "20a46390f71fadda499c61193d430c3d53df49b55a4cefa50a112f82fa4b05ef",
     "plugins/src/base/rules/reference/integration-access-layer.md": "6d0f419b315ffcf9bdd14a556a81c05848e8245e2ba850696e72d4cff2e65600",
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@@ -459,7 +459,7 @@ export const UPSTREAM_EVIDENCE_MANIFEST = Object.freeze({
     "plugins/src/base/scripts/automation-status-report.mjs": "520f77645c5b7cab3f69848fb5cf19e8b1d802cd1f8ce6a35aa36a0bf6a0d146",
     "plugins/src/base/scripts/automation-status-run-history.mjs": "a07f0d1af412f0d2747a9cbe82fa0edbeb8cc8dd4bdf4c51526e779090f08208",
     "plugins/src/base/scripts/cross-pollinate.mjs": "e9a536389d2581370f6c470b8a070aaae96660646efc528a7ff7fb25d324a903",
-    "plugins/src/base/scripts/design-source-gate.mjs": "2c8121404ac6dd71f74a3080561aa6daecb4f719fdd1360622511d35186bc13f",
+    "plugins/src/base/scripts/design-source-gate.mjs": "4db12844df14cc5dbcbdb96df9273cdce08057bc839493649fa65fccf559953b",
     "plugins/src/base/scripts/doctor-report.mjs": "f183e62848ac539da56a525fe2105fc6251a49e555a01dd1bba10d9227b1a6bf",
     "plugins/src/base/scripts/install-remote-agent-aws.mjs": "5ef1c323d7cbfda8976f6fb0c24f7a8e5f5757475fd1d71c6e5bec91023cebe3",
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@@ -492,7 +492,7 @@ export const UPSTREAM_EVIDENCE_MANIFEST = Object.freeze({
     "plugins/src/base/skills/lisa-detect-tooling/scripts/commands.mjs": "e28bd61fdde4a336b56ae3395423026943a5816015719d31d04f0d5a0ab50eec",
     "plugins/src/base/skills/lisa-detect-tooling/scripts/detect-tooling.mjs": "9d06590e6b99cce33e5fb10bd5b9e7515318133e3635368ef47162abc123bdfa",
     "plugins/src/base/skills/lisa-doctor/SKILL.md": "ed46df59bfd1097acad4a5ad960811ffb37b318c94e36e5f78ea3b96c2d76136",
-    "plugins/src/base/skills/lisa-drive-pr-to-merge/SKILL.md": "66a89df3976ddb17af5c31415eeb6192c4c9e0ebba7ab3ee38b4fa6ebadb4955",
+    "plugins/src/base/skills/lisa-drive-pr-to-merge/SKILL.md": "3919c6161900916090ee315df322938efc5b53bdfabf78efe8683432cf8ae488",
     "plugins/src/base/skills/lisa-epic-triage/SKILL.md": "d02760411249bddbd396f283191fe3e82bb7b95bf9393a19a7025dc5a57c3ab7",
     "plugins/src/base/skills/lisa-evaluation-suite/SKILL.md": "96b5c2091ccd22a565935a7b0b917f67998881b81055ce3e4d518319472eac8b",
     "plugins/src/base/skills/lisa-exploratory-qa/SKILL.md": "7041419b9160e0370c9a2351a53235e57a997ef11dabc0b670f8873b1db48d08",
@@ -591,7 +591,7 @@ export const UPSTREAM_EVIDENCE_MANIFEST = Object.freeze({
     "plugins/src/base/skills/lisa-project-ideation/examples/idempotency-verification-harness.md": "c6def168f32c3e6cb426d7d7d942bbe5b5776b46e315f47d2b2aeaad275c7f0f",
     "plugins/src/base/skills/lisa-project-ideation/examples/public-external-inspiration.md": "8e61344f46d46c2f6806b6bdb5bbf0086df358240661a524806d1bd659330ce9",
     "plugins/src/base/skills/lisa-project-ideation/examples/unavailable-data-rejection.md": "362835db13cb8f73179754bce427d0f7caef7738a575aa5b936a0383b7f81078",
-    "plugins/src/base/skills/lisa-pull-request-review/SKILL.md": "f53f2674888609686cb86204e19863de1494b3975f4ec255711d65165403395d",
+    "plugins/src/base/skills/lisa-pull-request-review/SKILL.md": "10bb42cba995cdd6b945efd6ef3d48578860b9d09c94aefd17c298b53aed5053",
     "plugins/src/base/skills/lisa-qa-checklist/SKILL.md": "da1de96ada92d18f5f6b57e2751b95d5da28a6505debdb7ccd823b95bdd1405b",
     "plugins/src/base/skills/lisa-qa-clear/SKILL.md": "2a4bbe2501b159eceea289584e50bcceffae2fee5210420d6be3b403dae6d079",
     "plugins/src/base/skills/lisa-qa-fail/SKILL.md": "cf4bc2b6e3e31a7fabfba5fb9ed1218eb564b0d94113a317267371de7a2708fb",
@@ -1121,6 +1121,8 @@ export const UPSTREAM_EVIDENCE_MANIFEST = Object.freeze({
     "typescript/copy-overwrite/ast-grep/rules/.gitkeep": "5068239f6c760759362d6a1cc83478d77eef0214fa7f4f23c8d1ce4b56f532c0",
     "typescript/copy-overwrite/ast-grep/rules/no-inline-component-in-container.yml": "9cd675cbba11457ba70c9c4f853f3e5cf652fe98c508075946f02bf045710ca6",
     "typescript/copy-overwrite/ast-grep/rules/no-inline-component-in-view.yml": "a662cb959ad5d96e4dda09d6dce1d69318e7c13f3d01787658184fd6075c2781",
+    "typescript/copy-overwrite/ast-grep/rules/no-missing-fs-extra-namespace-member-js.yml": "1664d70f1c5c37341e9ae29bfbe375d47b2e0df3cf2022c1933af209233109e9",
+    "typescript/copy-overwrite/ast-grep/rules/no-missing-fs-extra-namespace-member.yml": "2601f136c89e2c70490a9a439f8a077157b09af525f6066fdae751001f8cc0ae",
     "typescript/copy-overwrite/ast-grep/utils/.gitkeep": "6792ca57f00ff5a84a4713a08308a8ab3144858b0b0d9f8251b8c26c48948fb7",
     "typescript/copy-overwrite/audit.ignore.config.json": "84ad811f25a9a309994153e1eb6117f9db90432f8e79e48065adec36494835bf",
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@@ -1129,7 +1131,7 @@ export const UPSTREAM_EVIDENCE_MANIFEST = Object.freeze({
     "typescript/copy-overwrite/eslint.slow.config.ts": "f66d04381940936544931d7f20ffd4e43c38b8a907d56ffa101e2236371d8c94",
     "typescript/copy-overwrite/knip.json": "6eb93d705a2d645332fbae1dd42cf2d48f85978ebc265451a53790912f277d12",
     "typescript/copy-overwrite/scripts/check-nightly-e2e-health.mjs": "c9dd6f6816b35d4d8f684892878d4181b9cb5266a7f2e2814970aa49dc04a001",
-    "typescript/copy-overwrite/scripts/check-skipped-required-checks.mjs": "0a8b14790f38e00e5abfc665d3e3d2c29e0a139a2a22c4a65e0c08547b42fb7f",
+    "typescript/copy-overwrite/scripts/check-skipped-required-checks.mjs": "8eaac3ea96d92b55c418877c1fe338a7c0b3a8f48ef3593258f54a633f761c85",
     "typescript/copy-overwrite/scripts/check-threshold-ratchet.mjs": "e1e3f22b33267212b90f915f83821559d1a45cab5b16c7164b86bd6c7b53549b",
     "typescript/copy-overwrite/scripts/check-verification-coverage.mjs": "3c1d27d0668fc66a18cb014f2b607878f0a88c178a773fbe964b8e46b19e86d6",
     "typescript/copy-overwrite/scripts/lisa-mutation.mjs": "7d8d24dea151ef2178807046e97aea7ebfadd9c88eb50347feb7bb4bb190227d",
@@ -1140,7 +1142,7 @@ export const UPSTREAM_EVIDENCE_MANIFEST = Object.freeze({
     "typescript/copy-overwrite/tsconfig.eslint.json": "8a8ae5e201b18887b8eeda5eb569747221695524d4193ea03b4338b97b7fa642",
     "typescript/copy-overwrite/tsconfig.json": "8f4257fcd2cfd4b23e83e0fdd4908d41ee8f1ae75bb95d632e653a0ac13d58e4",
     "typescript/copy-overwrite/vitest.config.ts": "da92f06cc3ce68462c6f2f3d95adb1b1464591ce383a24e3334dc986e0c1e0fb",
-    "typescript/create-only/.github/required-checks.json": "49063a033604c8e98f7782e4352d67dea77ac9b949189f166e43044f0af7e4f4",
+    "typescript/create-only/.github/required-checks.json": "0ec5fbf2fe2dcb366db0d0002357b881053143223a09a25e1dc488a87b142eb2",
     "typescript/create-only/.github/workflows/auto-update-pr-branches-dispatch.yml": "347f8a3830efdc3ad701fae0858994f4e45df8100844e91948b017b98115a28c",
     "typescript/create-only/.github/workflows/auto-update-pr-branches.yml": "cf185555bcbe8e9957333abcae2e0c20e00875f8d867f70134efbd2a5c974ee5",
     "typescript/create-only/.github/workflows/ci.yml": "dac98b7ab5a7397461e459b2553101bfdc6451d28b42f3b0115056b62cfb8b1d",
@@ -1168,7 +1170,7 @@ export const UPSTREAM_EVIDENCE_MANIFEST = Object.freeze({
     "typescript/github-rulesets/quality-checks.json": "d92599b203071b99b8fac1422b8493d2546138961ef04ba98176bc400af60945",
     "typescript/merge/.claude/settings.json": "834e6456cae81f45073bbbb08bf731fef043efb30cae2658cb4a59f17e66d165",
     "typescript/merge/.oxlintrc.json": "9504c20db80470c242c4ffe8cccad6951ed8141dfb5bf6503053e0b2712ab276",
-    "typescript/package-lisa/package.lisa.json": "7f121eec2d022cad7e3cf960806fefe7f30ef626cc89f951d322b40f5a9bd5ca",
+    "typescript/package-lisa/package.lisa.json": "339c86d92be6419bbbcb974162522f5339a5ab6795beb27d60d3594bb6da139f",
     "ui/README.md": "deeb35e767ea5dd2883268835ea3ad21cbad9fa63ec8d8ff5e200f0e2a7d2751",
     "ui/index.html": "400088617ed6f16b4e52da5bfa81242d75cb09bc3ad6929eadb9f06e5365b4b6",
 });
@@ -1367,6 +1369,8 @@ export const UPSTREAM_SURFACE_MANIFEST = Object.freeze({
     "ast-grep/rules/harper/require-statuscode-on-thrown-error.yml": true,
     "ast-grep/rules/no-inline-component-in-container.yml": true,
     "ast-grep/rules/no-inline-component-in-view.yml": true,
+    "ast-grep/rules/no-missing-fs-extra-namespace-member-js.yml": true,
+    "ast-grep/rules/no-missing-fs-extra-namespace-member.yml": true,
     "ast-grep/rules/phaser/no-canvas-renderer.yml": true,
     "ast-grep/rules/phaser/no-raw-webgl-context.yml": true,
     "ast-grep/rules/ruby/no-find-by-sql-without-params.yml": true,
@@ -6988,6 +6992,7 @@ export const UPSTREAM_SURFACE_MANIFEST = Object.freeze({
     "src/cli/doctor-sonar.ts": true,
     "src/cli/doctor-worker-epoch.ts": true,
     "src/cli/doctor-worker-journey.ts": true,
+    "src/cli/doctor-worktree-hygiene.ts": true,
     "src/cli/doctor.ts": true,
     "src/cli/environment-cmd.ts": true,
     "src/cli/file-upstream-cmd.ts": true,
@@ -7350,6 +7355,7 @@ export const UPSTREAM_SURFACE_MANIFEST = Object.freeze({
     "tests/fixtures/wiki-safety/allowed-contacts.md": true,
     "tests/fixtures/wiki-safety/redaction-source.md": true,
     "tests/helpers/__fixtures__/wiki-status-fixture.ts": true,
+    "tests/helpers/io-latency-budget.ts": true,
     "tests/helpers/nightly-e2e-gate-harness.ts": true,
     "tests/helpers/readiness-workflow-fixtures.ts": true,
     "tests/helpers/safety-net-guard-fixtures.ts": true,
@@ -7436,6 +7442,7 @@ export const UPSTREAM_SURFACE_MANIFEST = Object.freeze({
     "tests/unit/cli/doctor-sonar.test.ts": true,
     "tests/unit/cli/doctor-worker-epoch.test.ts": true,
     "tests/unit/cli/doctor-worker-journey.test.ts": true,
+    "tests/unit/cli/doctor-worktree-hygiene.test.ts": true,
     "tests/unit/cli/doctor.test.ts": true,
     "tests/unit/cli/file-upstream-contract.test.ts": true,
     "tests/unit/cli/gate-commands.test.ts": true,
@@ -7544,6 +7551,7 @@ export const UPSTREAM_SURFACE_MANIFEST = Object.freeze({
     "tests/unit/config/vitest-cdk.test.ts": true,
     "tests/unit/config/vitest-nestjs.test.ts": true,
     "tests/unit/config/vitest-typescript.test.ts": true,
+    "tests/unit/config/worktree-exclusion-anchoring.test.ts": true,
     "tests/unit/core/bootstrap-environment.test.ts": true,
     "tests/unit/core/fs-extra-namespace-callsites.test.ts": true,
     "tests/unit/core/fs-extra-namespace-members.test.ts": true,
@@ -7739,6 +7747,7 @@ export const UPSTREAM_SURFACE_MANIFEST = Object.freeze({
     "tests/unit/scripts/threshold-ratchet-wiring.test.ts": true,
     "tests/unit/scripts/threshold-ratchet.test.ts": true,
     "tests/unit/scripts/upstream-evidence-manifest.test.ts": true,
+    "tests/unit/scripts/vacuous-required-checks.test.ts": true,
     "tests/unit/scripts/verification-coverage.test.ts": true,
     "tests/unit/scripts/work-item-github-failure-diagnosis.test.ts": true,
     "tests/unit/scripts/work-item-tracker-unreachable.test.ts": true,
@@ -7952,7 +7961,9 @@ export const UPSTREAM_SURFACE_MANIFEST = Object.freeze({
     "tests/unit/strategies/repo-scope-claim.test.ts": true,
     "tests/unit/strategies/reset-seed-coverage-rule.test.ts": true,
     "tests/unit/strategies/rework-triage-skill.test.ts": true,
+    "tests/unit/strategies/runtime-behavior-change-consistency.test.ts": true,
     "tests/unit/strategies/runtime-behavior-change-decidability.test.ts": true,
+    "tests/unit/strategies/runtime-behavior-change-sources.ts": true,
     "tests/unit/strategies/security-two-bucket-contract.test.ts": true,
     "tests/unit/strategies/session-operating-pack.test.ts": true,
     "tests/unit/strategies/setup-automations-readiness-warning.test.ts": true,
@@ -8047,6 +8058,8 @@ export const UPSTREAM_SURFACE_MANIFEST = Object.freeze({
     "typescript/copy-overwrite/ast-grep/rules/.gitkeep": true,
     "typescript/copy-overwrite/ast-grep/rules/no-inline-component-in-container.yml": true,
     "typescript/copy-overwrite/ast-grep/rules/no-inline-component-in-view.yml": true,
+    "typescript/copy-overwrite/ast-grep/rules/no-missing-fs-extra-namespace-member-js.yml": true,
+    "typescript/copy-overwrite/ast-grep/rules/no-missing-fs-extra-namespace-member.yml": true,
     "typescript/copy-overwrite/ast-grep/utils/.gitkeep": true,
     "typescript/copy-overwrite/audit.ignore.config.json": true,
     "typescript/copy-overwrite/commitlint.config.cjs": true,