@codyswann/lisa 3.24.0 → 3.26.1

package/all/copy-overwrite/scripts/lisa-hooks/block-managed-file-edits.sh

@@ -4,10 +4,9 @@
 
 # PreToolUse hook: refuse agent writes to files Lisa overwrites on every apply.
 #
-# Lisa ships templates in three modes, and only one of them destroys host edits:
+# Lisa ships templates in three modes, and only one of them is unsafe to edit:
 #
-#   copy-overwrite — replaced wholesale on every `lisa apply`. An edit here is
-#                    gone at the next `bun install`, silently.
+#   copy-overwrite — see below; the harm depends on the file.
 #   copy-contents  — Lisa APPENDS its lines; host content survives.
 #   create-only    — skipped when the file exists; the host owns it outright.
 #
@@ -15,6 +14,21 @@
 # would stop agents editing files they are supposed to own, which is worse than
 # the problem being solved.
 #
+# WITHIN copy-overwrite there are two populations with OPPOSITE consequences,
+# and an earlier version of this guard described only one of them:
+#
+#   hash-tracked guards (the `.mjs` scripts, listed in the Lisa-owned ledger)
+#     — an edit classifies as `host-modified` and `lisa apply` PRESERVES it.
+#       The file silently forks and stops receiving upstream fixes while looking
+#       current. Nothing is deleted; that is what makes it hard to notice.
+#   everything else (`.json` configs and friends)
+#     — replaced wholesale on the next apply, which runs on every install.
+#       The edit vanishes.
+#
+# The refusal branches on ledger membership so it states the consequence that
+# actually applies, rather than describing both and leaving the reader to work
+# out which they are in.
+#
 # Measured, not hypothetical. Nothing enforced this, so downstream copies were
 # edited and then silently diverged: `classify-maestro-failures.mjs` reached
 # 36,061 bytes in one fleet repo against 29,586 shipped, and five gate files in
@@ -70,6 +84,71 @@ if [ -f "$project_root/package.json" ] &&
   exit 0
 fi
 
+# Whether the project has claimed a path in `.lisaignore`.
+#
+# THIS IS THE OWNERSHIP QUESTION, and it decides whether blocking is right at
+# all. `lisa apply` skips an ignored path — it logs `Kept (.lisaignore)` and
+# counts it as ignored rather than overwritten — so the file is the project's,
+# its edits survive, and refusing them would be refusing someone access to their
+# own file. `doctor-lisa-owned-artifacts` already consults this list; this guard
+# did not, which would have blocked deliberate forks.
+#
+# The real matcher is minimatch in `src/utils/ignore-patterns.ts` and cannot be
+# reproduced faithfully in shell. This covers the common shapes — exact path,
+# directory prefix, glob, and a bare pattern matching any segment — and where it
+# is unsure it ALLOWS. Wrongly allowing costs an edit that apply may overwrite,
+# which is the behaviour before this guard existed; wrongly blocking locks
+# someone out of a file they own.
+lisaignored() {
+  local rel="$1"
+  local list="$project_root/.lisaignore"
+  [ -f "$list" ] || return 1
+  local pattern
+  while IFS= read -r pattern || [ -n "$pattern" ]; do
+    pattern="${pattern#"${pattern%%[![:space:]]*}"}"
+    pattern="${pattern%"${pattern##*[![:space:]]}"}"
+    [ -n "$pattern" ] || continue
+    case "$pattern" in \#*) continue ;; esac
+    # A leading `!` is not gitignore negation here. The real matcher passes
+    # patterns to minimatch, which negates by default, and it combines them with
+    # `.some()` — so a single `!scripts/a.mjs` line reports EVERY OTHER PATH as
+    # ignored. Measured:
+    #
+    #   patterns=["!scripts/a.mjs"]  path=scripts/a.mjs -> ignored=false
+    #   patterns=["!scripts/a.mjs"]  path=scripts/b.mjs -> ignored=TRUE
+    #
+    # Reproducing that faithfully would mean disabling this guard on a typo.
+    # Reproducing the intuitive gitignore reading would mean blocking files the
+    # matcher considers ignored. Both are wrong, so the file is treated as
+    # claimed and the write is allowed — the same direction this function errs
+    # everywhere else. Filed upstream; when the matcher stops negating, delete
+    # this branch rather than teaching it a second wrong answer.
+    case "$pattern" in !*) return 0 ;; esac
+    case "$pattern" in
+      */)
+        case "$rel" in "${pattern%/}"/* | "${pattern%/}") return 0 ;; esac
+        ;;
+    esac
+    # shellcheck disable=SC2254 -- the pattern is a glob on purpose.
+    case "$rel" in $pattern) return 0 ;; esac
+    case "$pattern" in
+      */*) ;;
+      *)
+        # shellcheck disable=SC2254 -- ditto, matched against the basename.
+        case "${rel##*/}" in $pattern) return 0 ;; esac
+        ;;
+    esac
+  done <"$list"
+  return 1
+}
+
+# A candidate rewritten relative to the project, so an absolute target from a
+# tool payload and a relative one from a shell command classify identically.
+relative_path() {
+  local rel="${1#"$project_root"/}"
+  printf '%s' "${rel#./}"
+}
+
 # Whether a host-relative path is shipped as a copy-overwrite template.
 #
 # A few stat calls rather than an enumeration: the same relative path is probed
@@ -80,10 +159,11 @@ managed_source() {
   case "$candidate" in
     */node_modules/* | node_modules/* | */dist/* | dist/*) return 1 ;;
   esac
-  # Normalise to a project-relative path so an absolute target still matches.
-  local rel="${candidate#"$project_root"/}"
-  rel="${rel#./}"
+  local rel
+  rel="$(relative_path "$candidate")"
   [ -n "$rel" ] || return 1
+  # Claimed by the project, so not ours to refuse.
+  lisaignored "$rel" && return 1
   local stack
   for stack in "$package_root"/*/copy-overwrite; do
     [ -d "$stack" ] || continue
@@ -95,19 +175,44 @@ managed_source() {
   return 1
 }
 
+# Whether a destination is a ledger-tracked Lisa-owned guard.
+#
+# The two populations behind this guard have OPPOSITE consequences, so the
+# refusal has to know which one it is looking at rather than describing both and
+# leaving the reader to guess. A guard in the content-hash ledger classifies as
+# `host-modified` once edited and `lisa apply` PRESERVES it; anything else is
+# replaced wholesale. Both are bad, for different reasons, and the right next
+# step differs too.
+ledger_tracked() {
+  local rel="$1"
+  local ledger="$package_root/dist/core/lisa-owned-hash-ledger.js"
+  [ -f "$ledger" ] || return 1
+  grep -q "\"$rel\"" "$ledger" 2>/dev/null
+}
+
 refuse() {
   local target="$1"
   local source="$2"
+  local rel="$3"
+  local consequence
+  if ledger_tracked "$rel"; then
+    consequence="This is a Lisa-owned guard, tracked by content hash. \`lisa apply\`
+will PRESERVE your edit rather than overwrite it — and that is the trap. The
+file silently forks: it keeps looking current while every upstream fix stops
+reaching it. One repository in this fleet is carrying 243 lines of divergence
+nobody knew about, in a guard that had quietly stopped receiving fixes."
+  else
+    consequence="This template is not hash-tracked, so \`lisa apply\` REPLACES it
+wholesale — and apply runs on every \`bun install\`. Your edit survives until the
+next install and then vanishes, with nothing reporting that it had."
+  fi
   cat >&2 <<EOF
 BLOCKED: refusing to write \`$target\`.
 
-WHY: this file is Lisa-managed. It is shipped as a **copy-overwrite** template
-(\`$source\` in the installed package) and is replaced wholesale on every
-\`lisa apply\` — which runs on every \`bun install\`. Your edit would survive
-until the next install and then vanish, with nothing reporting that it had.
+WHY: this file is Lisa-managed, shipped as a **copy-overwrite** template
+(\`$source\` in the installed package).
 
-That is not hypothetical: downstream copies edited this way diverged silently
-until they stopped receiving upstream fixes entirely.
+$consequence
 
 WHERE IT GOES INSTEAD — take the first one that fits:
 
@@ -125,7 +230,23 @@ WHERE IT GOES INSTEAD — take the first one that fits:
    proves each one, so a project can substitute its own task without touching a
    shipped file.
 
-4. You believe this file should not be Lisa-managed at all. That is a real
+4. This project has deliberately FORKED this file and means to keep its own
+   version. What to do depends on which population it is, and \`.lisaignore\` is
+   the WRONG answer for a hash-tracked guard:
+
+   - **A Lisa-owned guard (hash-tracked).** Do NOT add it to \`.lisaignore\`. The
+     ledger already preserves your version, so ignoring it buys nothing — and it
+     silences the standoff \`lisa doctor\` reports on every run, replacing a true
+     warning with the line "Enforcement guards match the installed Lisa
+     version", which is then false. A visible, resolvable fork becomes a silent
+     permanent one. Keep the warning and resolve the fork: upstream what is
+     general, or accept the standoff knowingly. To make this one edit, use the
+     override below.
+   - **Any other template.** \`.lisaignore\` is the right answer. Nothing else
+     preserves it, and the entry declares the divergence where the next person
+     can see it.
+
+5. You believe this file should not be Lisa-managed at all. That is a real
    argument and it belongs upstream, not in a local edit that will be erased.
 
 If a human explicitly asked for this edit, they can re-run with
@@ -145,7 +266,7 @@ case "$tool_name" in
     while IFS= read -r candidate; do
       [ -n "$candidate" ] || continue
       if source_path="$(managed_source "$candidate")"; then
-        refuse "$candidate" "$source_path"
+        refuse "$candidate" "$source_path" "$(relative_path "$candidate")"
       fi
     done <<EOF
 $paths
@@ -160,7 +281,7 @@ EOF
     while IFS= read -r token; do
       [ -n "$token" ] || continue
       if source_path="$(managed_source "$token")"; then
-        refuse "$token" "$source_path"
+        refuse "$token" "$source_path" "$(relative_path "$token")"
       fi
     done <<EOF
 $(printf '%s' "$command_str" |

package/dist/cli/doctor-lisa-owned-artifacts.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"doctor-lisa-owned-artifacts.d.ts","sourceRoot":"","sources":["../../src/cli/doctor-lisa-owned-artifacts.ts"],"names":[],"mappings":"AA2BA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kCAAkC,CAAC;AAoBnE,wEAAwE;AACxE,UAAU,aAAa;IACrB,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,IAAI,GAAG,MAAM,GAAG,MAAM,CAAC;IAC/B,MAAM,EAAE,MAAM,CAAC;CAChB;AAkHD;;;;;;;;;;;;;;;;GAgBG;AACH,wBAAsB,uBAAuB,CAC3C,UAAU,EAAE,MAAM,EAClB,QAAQ,GAAE,MAA0B,EACpC,MAAM,CAAC,EAAE,UAAU,GAClB,OAAO,CAAC,aAAa,CAAC,CAoDxB"}

package/dist/cli/doctor-lisa-owned-artifacts.js

@@ -146,8 +146,12 @@ export async function checkLisaOwnedArtifacts(targetPath, lisaRoot = defaultLisa
     // swap a guard for a thin re-export and have doctor call it current.
     const selfHost = await isLisaSourceRepo(targetPath);
     const results = await Promise.all([...shipped].map(async ([destination, sources]) => {
+        // Ignored is UNASSESSED, not clean. Reported as such below, because a
+        // `.lisaignore` entry on a Lisa-owned guard suppresses the divergence
+        // warning while changing nothing about the divergence — and the ok line
+        // then states conformance that was never established.
         if (matchesAnyPattern(destination, ignorePatterns))
-            return undefined;
+            return [destination, "ignored"];
         const installedPath = path.join(targetPath, destination);
         const installed = await readFile(installedPath).catch(() => undefined);
         if (installed === undefined)
@@ -174,11 +178,18 @@ function summarise(findings) {
         .sort((left, right) => left.localeCompare(right));
     const stale = pick("stale");
     const modified = pick("modified");
+    const ignored = pick("ignored");
     if (stale.length === 0 && modified.length === 0) {
+        // Named rather than folded into the pass. A guard excluded by
+        // `.lisaignore` was never compared, so claiming it matches asserts
+        // something no comparison established — and the file it most often hides
+        // is a fork the project has stopped noticing.
         return {
             name: CHECK_NAME,
             status: "ok",
-            detail: "Enforcement guards match the installed Lisa version",
+            detail: ignored.length > 0
+                ? `Enforcement guards match the installed Lisa version; ${ignored.length} not assessed (.lisaignore): ${ignored.join(", ")}`
+                : "Enforcement guards match the installed Lisa version",
         };
     }
     const parts = [

package/dist/cli/doctor-lisa-owned-artifacts.js.map

@@ -1 +1 @@
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package/dist/cli/doctor-reusable-workflow-refs.d.ts

@@ -0,0 +1,25 @@
+import type { DoctorCheck } from "./doctor.js";
+/** One caller pointing at the wrong kind of ref for its role. */
+export interface RefFinding {
+    /** Workflow file inside the project, relative to the project root. */
+    file: string;
+    /** The Lisa reusable being called. */
+    reusable: string;
+    /** The ref it currently uses. */
+    ref: string;
+    /** Operator-readable statement of what is wrong. */
+    problem: string;
+}
+/**
+ * Find callers whose ref does not match the role of the reusable they call.
+ * @param targetPath - Project root
+ * @returns Every finding, in file order
+ */
+export declare function reusableRefFindings(targetPath: string): Promise<RefFinding[]>;
+/**
+ * Report callers of Lisa's reusable workflows using the wrong ref for their role.
+ * @param targetPath - Project path to inspect
+ * @returns Doctor check result
+ */
+export declare function checkReusableWorkflowRefs(targetPath: string): Promise<DoctorCheck>;
+//# sourceMappingURL=doctor-reusable-workflow-refs.d.ts.map

package/dist/cli/doctor-reusable-workflow-refs.d.ts.map

@@ -0,0 +1 @@
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package/dist/cli/doctor-reusable-workflow-refs.js

@@ -0,0 +1,153 @@
+/**
+ * Doctor check: callers of Lisa's reusable workflows point at the ref their
+ * role requires — `@main` for almost all of them, an immutable pin for the two
+ * that are merge gates.
+ *
+ * ## Why `@main` is right for almost all of them
+ *
+ * Consumers tracking `@main` is an owner decision, and the rest of the gate
+ * subsystem is built on it. The permission-scope baseline is frozen precisely
+ * because "an installed caller is a snapshot of the past, so the property that
+ * keeps it working is that the callee does not move", and a renamed required
+ * context has to reach every consumer in one release. Both assume a caller
+ * receives a change on its next run.
+ *
+ * A pinned caller breaks that silently, and silently is the problem: it keeps
+ * running, keeps reporting, and stops receiving fixes. Nothing surfaces it.
+ *
+ * ## Why two of them are the opposite
+ *
+ * `nightly-e2e-health` and `nightly-e2e-report` produce a **required merge
+ * gate** context. The thing deciding whether code may merge must not change
+ * under you between two runs of the same pull request, so those callers pin an
+ * immutable ref and `@main` is a defect there. That is a ratified exception
+ * guarded by `tests/integration/nightly-e2e-{health,report}-workflow.test.ts`,
+ * and the shipped templates carry the reasoning inline.
+ *
+ * So the rule is two-directional, and a check enforcing only "everything must
+ * be `@main`" would delete a deliberate guarantee — which is exactly what the
+ * first draft of this module did before those tests caught it.
+ *
+ * ## Not the same question as action pinning
+ *
+ * `doctor-readiness-action-pins` wants third-party *step* actions pinned to a
+ * full SHA — supply-chain immutability for code Lisa does not control. This is
+ * job-level `uses:` pointing at Lisa itself, where mutability is usually the
+ * point. Opposite answers, different subjects.
+ * @module cli/doctor-reusable-workflow-refs
+ */
+import { readdir, readFile } from "node:fs/promises";
+import * as path from "node:path";
+/** Name rendered in the doctor report. */
+const CHECK_NAME = "Lisa reusable workflow refs";
+/** The ref an ordinary caller is expected to track. */
+const EXPECTED_REF = "main";
+/**
+ * Reusables whose callers MUST pin an immutable ref instead of `@main`.
+ *
+ * Both produce a required merge-gate context, and a merge gate that can change
+ * between two runs of the same pull request is not a gate. Guarded upstream by
+ * `nightly-e2e-health-workflow.test.ts` and `nightly-e2e-report-workflow.test.ts`,
+ * so this set cannot grow silently.
+ */
+const MERGE_GATE_REUSABLES = new Set([
+    "nightly-e2e-health.yml",
+    "nightly-e2e-report.yml",
+]);
+/** A ref that cannot move under a running pull request. */
+const IMMUTABLE_REF = /^(v\d+\.\d+\.\d+|[0-9a-f]{40})$/;
+/** Job-level `uses:` mapping pointing at a Lisa reusable workflow, capturing the ref. */
+const LISA_REUSABLE_USES = /^[ \t]*uses:\s*["']?CodySwannGT\/lisa\/\.github\/workflows\/([A-Za-z0-9._-]+\.ya?ml)@([^\s"']+)/gm;
+/**
+ * Every workflow file in a project's `.github/workflows` directory.
+ * @param targetPath - Project root
+ * @returns Absolute paths, empty when the directory is absent
+ */
+async function workflowFiles(targetPath) {
+    const dir = path.join(targetPath, ".github", "workflows");
+    const entries = await readdir(dir).catch(() => undefined);
+    if (entries === undefined)
+        return [];
+    return entries
+        .filter(name => /\.ya?ml$/.test(name))
+        .map(name => path.join(dir, name));
+}
+/**
+ * Judge one caller's ref against the role of the reusable it calls.
+ * @param reusable - Reusable workflow file name
+ * @param ref - The ref the caller uses
+ * @returns A problem statement, or null when the ref is correct
+ */
+function refProblem(reusable, ref) {
+    if (MERGE_GATE_REUSABLES.has(reusable)) {
+        if (IMMUTABLE_REF.test(ref))
+            return null;
+        return (`produces a required merge-gate context, so it must pin an immutable ref ` +
+            `(a version tag or a full SHA); \`@${ref}\` can change between two runs of ` +
+            "the same pull request");
+    }
+    if (ref === EXPECTED_REF)
+        return null;
+    return (`should track @${EXPECTED_REF}; a pinned caller keeps running and keeps ` +
+        "reporting while it stops receiving fixes, so nothing surfaces the drift");
+}
+/**
+ * Find callers whose ref does not match the role of the reusable they call.
+ * @param targetPath - Project root
+ * @returns Every finding, in file order
+ */
+export async function reusableRefFindings(targetPath) {
+    const files = await workflowFiles(targetPath);
+    const perFile = await Promise.all(files.map(async (file) => {
+        // Matched as text rather than through a YAML parse: a caller whose YAML
+        // is malformed still runs nothing and still needs reporting, and a parse
+        // failure would silently drop the file from the audit — reporting a clean
+        // project because it could not read one.
+        const text = await readFile(file, "utf8").catch(() => "");
+        return [...text.matchAll(LISA_REUSABLE_USES)].flatMap(match => {
+            const [, reusable, ref] = match;
+            if (reusable === undefined || ref === undefined)
+                return [];
+            const problem = refProblem(reusable, ref);
+            if (problem === null)
+                return [];
+            return [
+                { file: path.relative(targetPath, file), reusable, ref, problem },
+            ];
+        });
+    }));
+    return perFile.flat();
+}
+/**
+ * Report callers of Lisa's reusable workflows using the wrong ref for their role.
+ * @param targetPath - Project path to inspect
+ * @returns Doctor check result
+ */
+export async function checkReusableWorkflowRefs(targetPath) {
+    const files = await workflowFiles(targetPath);
+    if (files.length === 0) {
+        // Absent, not clean. Saying so beats an "ok" that reads as a passed audit.
+        return {
+            name: CHECK_NAME,
+            status: "ok",
+            detail: "No .github/workflows directory, so no callers to check",
+        };
+    }
+    const findings = await reusableRefFindings(targetPath);
+    if (findings.length === 0) {
+        return {
+            name: CHECK_NAME,
+            status: "ok",
+            detail: `Every Lisa reusable workflow caller uses the ref its role requires (${files.length} workflow file(s) scanned)`,
+        };
+    }
+    const lines = findings
+        .map(f => `${f.file} calls ${f.reusable}@${f.ref} — it ${f.problem}`)
+        .join("; ");
+    return {
+        name: CHECK_NAME,
+        status: "fail",
+        detail: `${findings.length} caller(s) use the wrong ref: ${lines}.`,
+    };
+}
+//# sourceMappingURL=doctor-reusable-workflow-refs.js.map

package/dist/cli/doctor-reusable-workflow-refs.js.map

@@ -0,0 +1 @@
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package/dist/cli/doctor.d.ts.map

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package/dist/cli/doctor.js

@@ -16,6 +16,7 @@ import { checkLegacyCodexOverlay } from "./doctor-legacy-overlay.js";
 import { checkLisaOwnedArtifacts } from "./doctor-lisa-owned-artifacts.js";
 import { checkLegacyMonitorThresholds } from "./doctor-monitor-thresholds.js";
 import { checkRepositoryReadiness } from "./doctor-readiness.js";
+import { checkReusableWorkflowRefs } from "./doctor-reusable-workflow-refs.js";
 import { checkWorkerEpoch } from "./doctor-worker-epoch.js";
 import { checkWorktreeHygiene } from "./doctor-worktree-hygiene.js";
 import { STARTERS } from "./starters.js";
@@ -263,6 +264,7 @@ export async function runDoctor(targetPath, options, dependencies = {}) {
         await checkSonarProvider(resolvedTarget, deps),
         await checkLegacyMonitorThresholds(resolvedTarget),
         await checkLisaOwnedArtifacts(resolvedTarget),
+        await checkReusableWorkflowRefs(resolvedTarget),
         await checkProjectType(resolvedTarget),
         await checkInstructionFiles(resolvedTarget),
         // Runs AFTER the instruction-files check because that check performs the

package/dist/cli/doctor.js.map

@@ -1 +1 @@
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package/dist/core/lisa-owned-hash-ledger.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"lisa-owned-hash-ledger.d.ts","sourceRoot":"","sources":["../../src/core/lisa-owned-hash-ledger.ts"],"names":[],"mappings":"AACA,6EAA6E;AAE7E;;;;;;;GAOG;AACH,eAAO,MAAM,sBAAsB,EAAE,QAAQ,CAC3C,MAAM,CAAC,MAAM,EAAE,SAAS,MAAM,EAAE,CAAC,CA0UjC,CAAC"}
+{"version":3,"file":"lisa-owned-hash-ledger.d.ts","sourceRoot":"","sources":["../../src/core/lisa-owned-hash-ledger.ts"],"names":[],"mappings":"AACA,6EAA6E;AAE7E;;;;;;;GAOG;AACH,eAAO,MAAM,sBAAsB,EAAE,QAAQ,CAC3C,MAAM,CAAC,MAAM,EAAE,SAAS,MAAM,EAAE,CAAC,CA6UjC,CAAC"}

package/dist/core/lisa-owned-hash-ledger.js

@@ -216,7 +216,10 @@ export const LISA_OWNED_HASH_LEDGER = Object.freeze({
         "d47314b66d6ce85f77d6e058f861eede4462b2b0a33d54e82ff1c931167ec3f7",
     ]),
     "scripts/lisa-hooks/block-managed-file-edits.sh": Object.freeze([
+        "133acf329582c5d4df9deb6a297df13216993c1bfec0b7df0663c69a1e2bb0db",
         "18aebaef5ea9bf6af220dc9beef80a5cfb37282c6a53047783b4cc96d8daa4e3",
+        "3882bd338e65b9db9e97aa9e70426f0f7a0d191539df51636e1a5e93a2501137",
+        "c1b2abf324269c0248136500eb37d7c43559552f152a7c5d07a23c219fdc70b2",
     ]),
     "scripts/lisa-hooks/block-no-verify.sh": Object.freeze([
         "031ef7a53fc49cb18665105b834b7b50ad6a43317e0821949809e877e0562ce4",

package/dist/core/lisa-owned-hash-ledger.js.map

@@ -1 +1 @@
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package/dist/core/upstream-evidence-manifest.d.ts.map

@@ -1 +1 @@
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