@codyswann/lisa 2.189.6 → 2.189.8

package/plugins/lisa-copilot/skills/atlassian-access/SKILL.md

@@ -1,361 +0,0 @@
----
-name: atlassian-access
-description: "Vendor-neutral access layer for Atlassian (JIRA + Confluence). Every jira-* and confluence-* skill MUST delegate through this skill rather than calling Atlassian directly. Resolves a substrate per operation, binding JIRA writes to the configured cloudId via Atlassian REST whenever token auth is available and using acli only for reads or as a guarded fallback. For non-write acli operations, acli is used when installed and switchable to a profile matching the configured site; mismatched active profiles are skipped only after switch plus re-verification fails."
-allowed-tools: ["Bash", "Read", "Skill"]
----
-
-# Atlassian Access: $ARGUMENTS
-
-Single chokepoint for all Atlassian operations. Routes each op to a substrate, enforces connection match, returns structured result. Caller skills (`jira-*`, `confluence-*`) MUST go through this — they MUST NOT invoke `acli` directly, call Atlassian MCP tools directly, or curl the Atlassian REST API themselves.
-
-## Invocation contract
-
-The caller passes one operation plus its arguments. Operations are listed in the dispatch table below. The skill returns either the structured operation result (JSON when the substrate provides it) or a clear error.
-
-```text
-operation: read-ticket  key: PROJ-123
-operation: write-ticket payload: {...}
-operation: transition   key: PROJ-123  to: "In Review"
-operation: comment      key: PROJ-123  body: "..."
-operation: search-issues jql: "project = SE AND status = Open"
-operation: read-page    id: 12345
-operation: write-page   payload: {...}
-```
-
-## Workflow
-
-### Step 1 — Substrate selection (per operation)
-
-Read config:
-
-```bash
-SITE=$(jq -r '.atlassian.site // empty' .lisa.config.json)
-CLOUDID=$(jq -r '.atlassian.cloudId // empty' .lisa.config.json)
-EMAIL=$(jq -r '.atlassian.email // empty' .lisa.config.local.json 2>/dev/null)
-[ -z "$CLOUDID" ] && { echo "Error: atlassian.cloudId not set. Run /lisa:setup:atlassian." >&2; exit 1; }
-```
-
-Probe each tier in order; the first that's ready AND identity-matches is the substrate for this operation. Identity-match is verified before any operation; substrates authenticated as a different Atlassian account are switched to the configured profile when one exists, then skipped only if the switch fails or re-verification still mismatches.
-
-```bash
-substrate=""
-
-# Tier 1: acli for reads and non-write operations only.
-#
-# Do not choose acli for JIRA writes when curl/token auth is available. acli stores
-# one machine-global active account and workitem writes cannot pin a cloudId per
-# invocation, so switch-then-write is a TOCTOU risk in multi-account or concurrent
-# sessions. Write operations prefer the cloudId-scoped REST URL below.
-if [ "$OP_KIND" != "jira-write" ] && command -v acli >/dev/null 2>&1 && acli auth status >/dev/null 2>&1; then
-  current_site=$(acli auth status 2>/dev/null | awk '/^  Site:/{print $2}')
-  if [ "$current_site" != "$SITE" ]; then
-    # acli installed but pointing at a different site. Try switching profiles.
-    acli auth switch --site "$SITE" ${EMAIL:+--email "$EMAIL"} >/dev/null 2>&1 || true
-    current_site=$(acli auth status 2>/dev/null | awk '/^  Site:/{print $2}')
-  fi
-  if [ "$current_site" = "$SITE" ]; then
-    substrate="acli"
-  fi
-fi
-
-# Tier 2: Atlassian MCP (if acli not ready OR the operation isn't acli-covered)
-# $OP_REQUIRES is a conceptual variable set by the dispatch table to "non-acli" for
-# operations that have no acli adapter (e.g. read-page-descendants). It is not a real
-# shell variable initialized here — the condition is illustrative pseudo-code.
-if [ -z "$substrate" ] || [ "$OP_REQUIRES" = "non-acli" ]; then
-  # Probe via mcp__plugin_atlassian_atlassian__getAccessibleAtlassianResources.
-  # (Pseudo-code; actual call is the MCP tool invocation, not a bash command.)
-  # If the MCP returns a list and $CLOUDID is in it, MCP is identity-matched.
-  # If the MCP is unauthenticated or $CLOUDID is NOT in the list, MCP is skipped.
-  if mcp_atlassian_authenticated_and_matches_cloudid "$CLOUDID"; then
-    : ${substrate:=mcp}
-    # Mark MCP as available even if acli already won tier 1 — used for ops acli can't do.
-    mcp_available=true
-  fi
-fi
-
-# Tier 3: curl + API token (headless / multi-account / scoped-token path)
-read_atlassian_token() {
-  local email="$1"
-  [ -n "$ATLASSIAN_API_TOKEN" ] && { echo "$ATLASSIAN_API_TOKEN"; return; }
-  local slug=$(echo "$email" | tr '[:upper:]@.' '[:lower:]__')
-  local varname="ATLASSIAN_API_TOKEN_${slug}"
-  [ -n "${!varname}" ] && { echo "${!varname}"; return; }
-  case "$(uname -s)" in
-    Darwin)  security find-generic-password -s lisa-atlassian -a "$email" -w 2>/dev/null ;;
-    Linux)   command -v secret-tool >/dev/null && secret-tool lookup service lisa-atlassian account "$email" 2>/dev/null ;;
-    MINGW*|MSYS*|CYGWIN*)
-      # `cmdkey /generic ... /pass:` stores the secret in Windows Credential Manager, but
-      # `cmdkey /list` never prints stored passwords (by design). Read the CredentialBlob
-      # back via the Win32 CredRead API through PowerShell; pass the target name via an env
-      # var to dodge nested quoting, and strip the CRLF powershell.exe appends.
-      LISA_CRED_TARGET="lisa-atlassian-${email}" powershell.exe -NoProfile -NonInteractive -Command '
-Add-Type -TypeDefinition @"
-using System;
-using System.Runtime.InteropServices;
-public static class LisaCred {
-  [StructLayout(LayoutKind.Sequential)]
-  private struct CREDENTIAL {
-    public int Flags; public int Type; public IntPtr TargetName; public IntPtr Comment;
-    public System.Runtime.InteropServices.ComTypes.FILETIME LastWritten;
-    public int CredentialBlobSize; public IntPtr CredentialBlob; public int Persist;
-    public int AttributeCount; public IntPtr Attributes; public IntPtr TargetAlias; public IntPtr UserName;
-  }
-  [DllImport("advapi32.dll", CharSet=CharSet.Unicode, SetLastError=true)]
-  private static extern bool CredRead(string target, int type, int flags, out IntPtr credential);
-  [DllImport("advapi32.dll")] private static extern void CredFree(IntPtr cred);
-  public static string Read(string target) {
-    IntPtr p;
-    if (!CredRead(target, 1, 0, out p)) { return null; }
-    try {
-      CREDENTIAL c = (CREDENTIAL)Marshal.PtrToStructure(p, typeof(CREDENTIAL));
-      if (c.CredentialBlobSize == 0) { return String.Empty; }
-      return Marshal.PtrToStringUni(c.CredentialBlob, c.CredentialBlobSize / 2);
-    } finally { CredFree(p); }
-  }
-}
-"@
-[LisaCred]::Read($env:LISA_CRED_TARGET)' 2>/dev/null | tr -d '\r' ;;
-  esac
-}
-TOKEN=$(read_atlassian_token "$EMAIL")
-[ -n "$TOKEN" ] && curl_available=true && {
-  if [ "$OP_KIND" = "jira-write" ]; then
-    substrate="curl"
-  else
-    : ${substrate:=curl}
-  fi
-}
-
-# Fail loudly with actionable remediation if nothing works.
-if [ -z "$substrate" ]; then
-  # Detect plugin enablement state for the suggestion.
-  plugin_enabled_global=$(jq -r '.enabledPlugins["atlassian@claude-plugins-official"] // false' ~/.claude/settings.json 2>/dev/null || echo "false")
-  plugin_enabled_project=$(jq -r '.enabledPlugins["atlassian@claude-plugins-official"] // false' .claude/settings.json 2>/dev/null || echo "false")
-  plugin_enabled_local=$(jq -r '.enabledPlugins["atlassian@claude-plugins-official"] // false' .claude/settings.local.json 2>/dev/null || echo "false")
-
-  cat >&2 <<EOF
-Error: no Atlassian access substrate available for site $SITE.
-
-Attempted:
-  acli   — $(command -v acli >/dev/null && echo "installed but identity mismatch or unauthenticated" || echo "not installed")
-  MCP    — $([ "$plugin_enabled_global" = "true" ] || [ "$plugin_enabled_project" = "true" ] || [ "$plugin_enabled_local" = "true" ] && echo "plugin enabled but not authenticated or cloudId $CLOUDID not in accessible resources" || echo "plugin not enabled in any settings.json scope")
-  curl   — no ATLASSIAN_API_TOKEN found for $EMAIL (env, slug-suffixed env, or keychain)
-
-Remediation paths (pick one):
-
-1. Install the Atlassian MCP plugin (local scope — per-developer, gitignored).
-   This is the simplest path for single-account developers.
-
-   Run in your terminal:
-
-     jq '.enabledPlugins["atlassian@claude-plugins-official"] = true' \\
-       .claude/settings.local.json 2>/dev/null > /tmp/s && \\
-       mv /tmp/s .claude/settings.local.json || \\
-       echo '{"enabledPlugins":{"atlassian@claude-plugins-official":true}}' > .claude/settings.local.json
-
-   Then restart Claude Code (or run /restart-mcp) to load the plugin, and
-   invoke 'mcp__plugin_atlassian_atlassian__authenticate' to complete OAuth.
-
-2. Install acli and authenticate (best for multi-account developers).
-
-     brew tap atlassian/homebrew-acli && brew install acli
-     acli auth login   # OAuth as the account matching $EMAIL
-
-3. Provision an API token (headless / CI / scoped-token environments).
-
-     Run /lisa:setup:atlassian — guided flow with clipboard-piped keychain store.
-
-EOF
-  exit 1
-fi
-```
-
-Operation dispatch then uses `$substrate` for the primary route. If the operation has no `acli` adapter and `$substrate=acli`, fall through to `$mcp_available` then `$curl_available` for the actual call. The fall-through stops at the first available tier that can perform the operation.
-
-### Step 2 — Connection-match check
-
-The active connection MUST point at the cloudId/site declared in `.lisa.config.json`. Step 1's substrate selection already tries to switch mismatched acli profiles and verifies the result before selection. This step repeats the assertion before any operation runs — defensive in case the substrate state changed since selection.
-
-Read configured site:
-
-```bash
-cloudid=$(jq -r '.atlassian.cloudId // empty' .lisa.config.json)
-site=$(jq -r '.atlassian.site // empty' .lisa.config.json)   # optional human-readable site URL
-email=$(jq -r '.atlassian.email // empty' .lisa.config.json) # optional, for multi-account disambiguation
-
-if [ -z "$cloudid" ]; then
-  echo "Error: atlassian.cloudId not set in .lisa.config.json. Run /lisa:setup:atlassian." >&2
-  exit 1
-fi
-```
-
-**CLI mode check**:
-
-```bash
-# Compare active acli profile against config.
-current=$(acli auth status --json 2>/dev/null)
-current_site=$(echo "$current" | jq -r '.site // empty')
-current_email=$(echo "$current" | jq -r '.email // empty')
-
-if [ -n "$site" ] && [ "$current_site" != "$site" ]; then
-  # Profile mismatch — switch, then re-verify. Do not trust the switch exit
-  # status alone because acli's active account is machine-global state.
-  acli auth switch --site "$site" ${email:+--email "$email"}
-  current=$(acli auth status --json 2>/dev/null)
-  current_site=$(echo "$current" | jq -r '.site // empty')
-  current_email=$(echo "$current" | jq -r '.email // empty')
-fi
-
-if [ -n "$site" ] && [ "$current_site" != "$site" ]; then
-  echo "Error: acli active site is '$current_site', but .lisa.config.json requires '$site'. Run /lisa:setup:atlassian to add or repair the matching profile." >&2
-  exit 1
-fi
-
-if [ -n "$email" ] && [ -n "$current_email" ] && [ "$current_email" != "$email" ]; then
-  echo "Error: acli active account is '$current_email', but .lisa.config.json requires '$email'. Run /lisa:setup:atlassian to add or repair the matching profile." >&2
-  exit 1
-fi
-```
-
-If `acli auth switch` fails because no matching profile exists, surface the error verbatim and instruct the caller to run `/lisa:setup:atlassian` to add the profile.
-
-**curl mode check** (when the chosen op routes to curl):
-
-```bash
-# Validate the active ATLASSIAN_API_TOKEN points at the configured account by
-# hitting /rest/api/3/myself and comparing emailAddress.
-AUTH=$(printf '%s:%s' "$email" "$ATLASSIAN_API_TOKEN" | base64)
-myself=$(curl -s -H "Authorization: Basic $AUTH" \
-  "https://${site}/rest/api/3/myself")
-me_email=$(echo "$myself" | jq -r '.emailAddress // empty')
-
-if [ -z "$me_email" ]; then
-  echo "Error: ATLASSIAN_API_TOKEN failed authentication against $site. Run /lisa:setup:atlassian to re-issue." >&2
-  exit 1
-fi
-if [ "$me_email" != "$email" ]; then
-  echo "Error: ATLASSIAN_API_TOKEN belongs to '$me_email', but .lisa.config.local.json declares '$email'. Multi-account misconfiguration." >&2
-  exit 1
-fi
-```
-
-If validation fails, never silently proceed — abort and instruct the user to fix env.
-
-### Step 2.5 — JIRA description normalization
-
-For `write-ticket` create/edit operations, normalize any Lisa-authored JIRA description before dispatching to a substrate. JIRA Cloud stores descriptions as Atlassian Document Format (ADF). `acli` does not convert Markdown or JIRA wiki markup to ADF; if plain text is passed to `--description` / `--description-file`, JIRA stores one literal paragraph containing strings like `## Repository` or `h2. Repository`. That breaks `jira-validate-ticket` heading checks and renders poorly for humans.
-
-Use the shared converter at `scripts/markdown-to-adf.mjs` from this skill for every write path that carries a string description:
-
-```bash
-normalize_jira_description_payload() {
-  local payload_file="$1"
-  local converter="$(dirname "$0")/scripts/markdown-to-adf.mjs"
-
-  jq -e '.fields.description | type == "string"' "$payload_file" >/dev/null 2>&1 || return 0
-
-  local markdown_file adf_file
-  markdown_file=$(mktemp)
-  adf_file=$(mktemp)
-  jq -r '.fields.description' "$payload_file" > "$markdown_file"
-  node "$converter" < "$markdown_file" > "$adf_file"
-  jq --slurpfile adf "$adf_file" '.fields.description = $adf[0]' "$payload_file" > "$payload_file.tmp"
-  mv "$payload_file.tmp" "$payload_file"
-}
-```
-
-Rules:
-
-- Convert Markdown headings (`#` / `##` / `###`) and JIRA wiki headings (`h1.` / `h2.` / `h3.`) to ADF `heading` nodes.
-- Convert fenced code blocks, bullet lists, numbered lists, paragraphs, inline code, and bold text to their ADF equivalents.
-- Run this for acli, curl, and MCP writes unless the caller already supplied an ADF object (`description.type == "doc"`). Do not double-convert existing ADF.
-- For acli, pass the normalized JSON through `--from-json`; do not use `--description` or `--description-file` with raw Markdown/wiki text.
-
-### Step 3 — Operation dispatch
-
-Substrate column meanings:
-
-- **`acli`**: routes through `acli`. Preferred when available and identity-matched.
-- **`MCP`**: routes through the Atlassian MCP. Preferred when acli can't do the op and the MCP is identity-matched (cloudId in `getAccessibleAtlassianResources`).
-- **`curl`**: routes through curl + Basic auth + `ATLASSIAN_API_TOKEN`. Used when neither acli nor MCP is available.
-- Multiple cells filled means tier ordering applies — try acli, then MCP, then curl, taking the first that has an adapter for the op AND is identity-matched.
-- One cell means only that substrate can perform the op.
-
-`<SITE>` = `.atlassian.site` (e.g. `propswap.atlassian.net`). `<CLOUDID>` = `.atlassian.cloudId`. `<AUTH>` = `Basic $(printf '%s:%s' "$email" "$ATLASSIAN_API_TOKEN" | base64)`. JIRA curl writes use the cloudId-bound Atlassian gateway `https://api.atlassian.com/ex/jira/<CLOUDID>/rest/api/3/...`; JIRA curl reads may use either that gateway or `https://<SITE>/rest/api/3/...` after the token account check. Confluence uses `/wiki/rest/api/...` (v1) or `/api/v2/...` (v2).
-
-| Operation | acli adapter | MCP adapter | curl adapter |
-|---|---|---|---|
-| **JIRA ops** | | | |
-| `read-ticket key:<K>` | `acli jira workitem view <K> --fields '*all' --json` | `mcp__plugin_atlassian_atlassian__getJiraIssue` | `GET https://<SITE>/rest/api/3/issue/<K>?fields=*all` |
-| `write-ticket payload:<P>` (create) | guarded fallback only: `acli jira workitem create --from-json <P>` + response tenant assertion | `mcp__plugin_atlassian_atlassian__createJiraIssue` | `POST https://api.atlassian.com/ex/jira/<CLOUDID>/rest/api/3/issue` body=`<P>` |
-| `write-ticket payload:<P>` (edit) | guarded fallback only: `acli jira workitem edit <K> --from-json <P>` + response tenant assertion | `mcp__plugin_atlassian_atlassian__editJiraIssue` | `PUT https://api.atlassian.com/ex/jira/<CLOUDID>/rest/api/3/issue/<K>` body=`<P>` |
-| `transition key:<K> to:<S>` | guarded fallback only: `acli jira workitem transition --key <K> --status "<S>" --yes` + post-read tenant assertion | `mcp__plugin_atlassian_atlassian__transitionJiraIssue` | resolve transition id then `POST https://api.atlassian.com/ex/jira/<CLOUDID>/rest/api/3/issue/<K>/transitions` |
-| `transitions key:<K>` | (not exposed) | `mcp__plugin_atlassian_atlassian__getTransitionsForJiraIssue` | `GET https://<SITE>/rest/api/3/issue/<K>/transitions` |
-| `comment key:<K> body:<B>` | guarded fallback only: `acli jira workitem comment add --key <K> --body "<B>"` + post-read tenant assertion | `mcp__plugin_atlassian_atlassian__addCommentToJiraIssue` | `POST https://api.atlassian.com/ex/jira/<CLOUDID>/rest/api/3/issue/<K>/comment` |
-| `link from:<K> to:<K2> type:<T>` | guarded fallback only: `acli jira workitem link create --in <K> --out <K2> --type "<T>" --yes` + direction and tenant assertion (see direction note) | `mcp__plugin_atlassian_atlassian__createJiraIssueLink` | `POST https://api.atlassian.com/ex/jira/<CLOUDID>/rest/api/3/issueLink` |
-| `remote-links key:<K>` | (not exposed) | `mcp__plugin_atlassian_atlassian__getJiraIssueRemoteIssueLinks` | `GET https://<SITE>/rest/api/3/issue/<K>/remotelink` |
-| `search-issues jql:<J>` | `acli jira workitem search --jql "<J>" --json` | `mcp__plugin_atlassian_atlassian__searchJiraIssuesUsingJql` | `POST https://<SITE>/rest/api/3/search/jql` |
-| `list-projects` | `acli jira project list --paginate --json` | `mcp__plugin_atlassian_atlassian__getVisibleJiraProjects` | `GET https://<SITE>/rest/api/3/project/search` |
-| `issue-type-metadata project:<K>` | `acli jira project view --key <K> --include-all --json` | `mcp__plugin_atlassian_atlassian__getJiraProjectIssueTypesMetadata` | `GET https://<SITE>/rest/api/3/issuetype/project?projectId=<id>` |
-| **Confluence ops** | | | |
-| `read-page id:<I>` | `acli confluence page view --id <I> --json` | `mcp__plugin_atlassian_atlassian__getConfluencePage` | `GET https://api.atlassian.com/ex/confluence/<CLOUDID>/wiki/rest/api/content/<I>` |
-| `read-page-descendants id:<I>` | — | `mcp__plugin_atlassian_atlassian__getConfluencePageDescendants` | `GET .../content/<I>/descendant/page` |
-| `read-page-comments id:<I> kind:<footer\|inline>` | — | `mcp__plugin_atlassian_atlassian__getConfluencePageFooterComments` / `getConfluencePageInlineComments` | `GET .../content/<I>/child/comment?location=<kind>` |
-| `read-comment-children id:<C>` | — | `mcp__plugin_atlassian_atlassian__getConfluenceCommentChildren` | `GET .../content/<C>/child/comment` |
-| `write-page payload:<P>` (create) | — | `mcp__plugin_atlassian_atlassian__createConfluencePage` | `POST .../wiki/rest/api/content` body=`<P>` |
-| `write-page payload:<P>` (edit) | — | `mcp__plugin_atlassian_atlassian__updateConfluencePage` | `PUT .../content/<I>` body must include `version.number` bumped |
-| `label-page id:<I> add:<L1,L2> remove:<L3,L4>` | — | (no v2 label-write endpoint on MCP) | (Atlassian gap; not used by lisa — see "Confluence PRD lifecycle" rule) |
-| `comment-page id:<I> kind:<footer\|inline> body:<B>` | — | `mcp__plugin_atlassian_atlassian__createConfluenceFooterComment` / `createConfluenceInlineComment` | `POST .../content` body has `type=comment` |
-| `search-pages cql:<Q>` | — | `mcp__plugin_atlassian_atlassian__searchConfluenceUsingCql` | `GET .../content/search?cql=<Q>` |
-| `list-spaces` | `acli confluence space list --type global --json` | `mcp__plugin_atlassian_atlassian__getConfluenceSpaces` | `GET .../wiki/rest/api/space` |
-| **Common ops** | | | |
-| `list-sites` | `acli auth status --json` | `mcp__plugin_atlassian_atlassian__getAccessibleAtlassianResources` | `GET https://api.atlassian.com/oauth/token/accessible-resources` |
-
-**Confluence v1 vs v2:** every Confluence curl path above uses **v1** (`/wiki/rest/api/...`). v1 is deprecated by Atlassian but as of writing remains functional for API-token Basic auth. The v2 API (`/api/v2/...`) requires *granular* OAuth scopes that aren't issued to Basic-auth API tokens consistently — so v1 is the safer path for now. When Atlassian fully retires v1, this table must move to v2 (the dispatch is the only thing that changes; the substrate-selection logic is unaffected).
-
-**acli flag note:** acli's `--output` flag does not exist; the correct flag is `--json`. List commands require `--paginate` or `--limit` (no implicit fetch-all). `acli jira workitem view` defaults to a restricted field set (`key,issuetype,summary,status,assignee,description`), so `read-ticket` MUST pass `--fields '*all'` or an explicit equivalent that includes every downstream dependency: parent, subtasks, issue links, components, labels, priority, status, issue type, summary, description, fix versions, affected versions, attachments, comments, estimates, sprint/story-point fields, and project-required custom fields. Never rely on the default view fields; they hide parent/components/labels and corrupt leaf-only, relationship-search, build-ready, and required-custom-field gates. Several documented adapters are nominal — verify against `acli <subcmd> --help` before relying on them. When acli's adapter is broken or missing for a specific op, fall through to MCP (if identity-matched) then curl per the tier ordering.
-
-**JIRA write tenant-safety rule:** create, edit, transition, comment, and link are write operations. They MUST prefer the curl adapter whenever token auth is available because the URL includes `<CLOUDID>` and cannot be redirected by the user-global acli active account. If the flow must fall back to acli for a write, it is a guarded fallback, not the normal path:
-
-1. Switch and assert the active `acli auth status` site/email matches config immediately before the write.
-2. Execute the write.
-3. Read the affected issue(s) immediately after the write.
-4. Assert each response belongs to the configured tenant by checking one of: response `self` URL host equals `<SITE>`, response `self` URL path includes `/ex/jira/<CLOUDID>/`, or response metadata reports `<CLOUDID>`.
-5. If the assertion fails, stop, report a cross-tenant write hazard, and best-effort roll back the write when there is a safe reversal: delete a newly created issue, remove a newly created comment/link, or revert a reversible field edit. Never continue as if the write succeeded.
-
-Do not treat a successful `acli auth switch` or pre-write `auth status` as sufficient for tenant safety. Another process can mutate the global acli active account between the check and the write.
-
-**acli link-create direction is invertible — flags and verification:** acli has no `--inward`/`--outward` flags; the real flags are `--in` and `--out` (confirm with `acli jira workitem link create --help`). For a `Blocks` link, **`--in` is the blocker and `--out` is the blocked** issue, i.e. `--in <X> --out <Y> --type Blocks` resolves to "X blocks Y" (Y `is blocked by` X). The lisa op `link from:<K> to:<K2> type:<T>` means "K ⟨T⟩ K2", so the blocker `from` maps to `--in` and the blocked `to` maps to `--out` (as in the adapter above). The acli success banner only echoes the `--in`/`--out` values you passed — it does NOT confirm the resolved semantic direction, so a reversed link reports success and looks fine. **After every `link` write, re-read the affected issues via `read-ticket` (which already requests `--fields '*all'`) and confirm `issuelinks[].type` + `inwardIssue`/`outwardIssue` resolve to the intended `blocks` / `is blocked by` direction.** Skipping this can silently reverse an entire epic's dependency graph — e.g. cutover tickets recorded as *blocking* the prerequisites that should block them.
-
-**JIRA terminal-resolution note:** when a caller marks a transition as terminal per `leaf-only-lifecycle`, the substrate must not treat a Done-named status as sufficient by name alone. After `transition key:<K> to:<S>`, re-read the issue and verify `statusCategory = Done`; if the workflow requires a resolution, verify `resolution` is set. If the transition screen requires a resolution value, pass the configured default resolution when available; otherwise return a setup error so the build-intake skill can report the workflow gap instead of silently leaving an unresolved ticket in a Done-looking status.
-
-Operations not in this table are unsupported — add an adapter row before using them. Adapters MUST return a structured response (parse `acli`'s `--json`; jq-process curl's raw JSON).
-
-### Payload conventions
-
-- `write-ticket` payload: full JSON spec when creating; partial JSON (only changed fields, with `key` to identify) when editing. Adapters detect create vs edit by presence of `key`.
-- `write-page` payload: supports a label-only mutation form — `{ "id": "<I>", "labels": { "add": [...], "remove": [...] } }` — so callers transitioning PRD lifecycle labels do not need to resend the page body. Full create/update payloads also accepted.
-- `comment-page` `kind: inline` requires `anchor` (the highlighted text the comment attaches to). `kind: footer` ignores `anchor`.
-
-### Step 4 — Return result
-
-Emit either:
-
-- The structured operation result (JSON object), wrapped in a `<result>` block for caller parsing, OR
-- An error message prefixed with `Error:` and a remediation hint. Exit non-zero. Include the HTTP status code (curl) or acli exit code so callers can route on it.
-
-Do not paraphrase substrate output beyond JSON normalization.
-
-## Invariants
-
-- Caller skills never invoke `acli` or `curl` against Atlassian directly. They only invoke this skill.
-- Substrate is decided once per skill invocation and never switches mid-operation.
-- Connection match is mandatory. Operations that bypass it (because "the user obviously meant the configured site") are forbidden.
-- Profile mutations (`acli auth switch`) are allowed when acli is the active substrate. The curl substrate never mutates the token — if `ATLASSIAN_API_TOKEN` doesn't match the configured account, fail loud rather than silently substituting.
-- JIRA writes are cloudId-bound by default. `acli` write adapters are fallback-only and must perform post-write tenant assertions plus safe rollback on mismatch.
-- `.lisa.config.local.json` overrides `.lisa.config.json` per-key — the same precedence rule as every other consumer of project config.
-
-## Headless behavior
-
-In a headless / non-interactive context (no TTY, `CI=true`, or `-p` mode), the MCP tier is unavailable (its OAuth flow needs a browser). The substrate ladder collapses to: acli (if pre-authenticated, e.g., a CI image baked with a service-account token) → curl + `ATLASSIAN_API_TOKEN`. Never block on interactive prompts. If both fail readiness checks, exit non-zero with a deterministic error.

package/plugins/lisa-copilot/skills/automation-status/SKILL.md

@@ -1,111 +0,0 @@
----
-name: automation-status
-description: "Read-only operator surface for the current project's Lisa automation fleet. Resolves the expected recurring jobs from the same setup-automations contract Lisa uses to create them, inspects the active runtime scheduler (Codex automations or Claude /schedule), compares live command/cadence/queue arguments against the expected contract, and reports grouped fleet health such as healthy, missing, unsupported, drifted, stale, or failing with remediation guidance."
-allowed-tools: ["Skill", "Bash", "Read"]
----
-
-# Automation Status: $ARGUMENTS
-
-`/lisa:automation-status` is the operator-facing inspection surface for Lisa's unattended job fleet. It answers, for the **current repo only**, whether the recurring Lisa automations that should exist actually exist, still match Lisa's setup contract, and appear healthy based on the runtime metadata available.
-
-This command is **read-only** in v1. It does not create, update, resume, rerun, pause, or delete automations. It complements `/lisa:setup-automations`, `/lisa:tear-down-automations`, `/lisa:intake`, `/lisa:repair-intake`, `doctor`, and `monitor`; it does not replace them.
-
-## Confirmation policy
-
-Do **not** ask for confirmation once invoked. This skill inspects scheduler state and reports what it finds. There are no write-side effects in the v1 surface.
-
-## Scope
-
-Inspect only the Lisa automation fleet for the current project:
-
-- `intake-repair`
-- `intake-prd`
-- `intake-tickets`
-- `exploratory-bugs` when the current stack supports `exploratory-qa`
-- `exploratory-prds`
-
-Resolve the expected project identifier, fleet naming prefix, queue arguments, cadence, and stack-support rules from the same contract used by `setup-automations` and `tear-down-automations`. Do **not** invent a second source of truth for fleet naming or queue resolution.
-
-## Runtime inspection
-
-Branch on the active runtime and prefer the runtime's native automation listing surface:
-
-- **Codex**: inspect Codex automations metadata first. Use backing-store files only as a fallback or to enrich timestamps when the runtime surface cannot provide enough status detail directly.
-- **Claude**: inspect the `/schedule` listing surface and any exposed recency or failure metadata available there.
-- **Other runtimes**: if no native recurring-task inspection exists, report that automation-status is unsupported in this runtime rather than guessing.
-
-The report must stay repo-scoped: inspect only automations whose names belong to the current repo's Lisa fleet prefix, and do not absorb unrelated automations into the result.
-
-## What to report
-
-For each expected automation, report:
-
-1. Whether it exists.
-2. Whether it is expected or intentionally unsupported.
-3. The configured command and cadence Lisa expects.
-4. Any detected drift in name, cadence, command shape, or queue arguments.
-5. Any available recent-run health signal such as stale last-run timing or repeated failure status.
-6. A concise remediation hint when attention is needed.
-
-Emit an overall grouped fleet verdict such as `HEALTHY`, `ATTENTION_NEEDED`, or `PARTIAL_SUPPORT`, plus the runtime surface inspected.
-
-## Operator usage
-
-Typical entrypoint:
-
-```text
-/lisa:automation-status
-```
-
-Use this command when an operator needs to answer one of these questions for the current repo:
-
-- "Did Lisa set up every automation this project expects?"
-- "Is the scheduler still pointing at the right cadence and queue arguments?"
-- "Is the queue idle because there is no work, or because the automation is stale or failing?"
-
-The report should be terminal-first and immediately actionable: observable scheduler facts first, then the smallest useful remediation step.
-
-## Runtime differences
-
-- **Codex**: prefer native automation metadata and use backing-store files only to fill gaps such as timestamps or failure recency. When Codex exposes health/memory signals, include them as observed facts rather than assumptions.
-- **Claude**: use the `/schedule` listing as the primary runtime surface. Compare the live schedule name, cadence, and command shape against the Lisa contract, but degrade gracefully when `/schedule` does not expose equivalent recency or failure fields.
-- **Other runtimes**: report automation-status as unsupported for that runtime instead of guessing from unrelated files or naming patterns.
-
-## Verdicts and remediation
-
-- `HEALTHY`: every expected automation exists and the inspected runtime metadata shows no actionable drift, staleness, or failure.
-- `PARTIAL_SUPPORT`: the fleet is otherwise healthy, but at least one exploratory job is intentionally unsupported for this stack or runtime.
-- `ATTENTION_NEEDED`: at least one automation is missing, drifted, stale, or failing.
-
-Status-specific remediation guidance:
-
-- `MISSING`: tell the operator which job is absent and recommend rerunning `/lisa:setup-automations` or recreating the missing job with the expected cadence and command.
-- `DRIFTED`: show the expected versus observed cadence/command mismatch and recommend aligning the scheduler entry with Lisa's current setup contract, usually by rerunning `/lisa:setup-automations`.
-- `STALE`: explain that the job exists but has not run recently enough for its cadence. Recommend inspecting the runtime's recent-run history or failure logs before changing queue state.
-- `FAILING`: surface the failure signal directly and recommend checking the latest runtime error plus the affected queue command (`/lisa:intake`, `/lisa:repair-intake`, or exploratory job) after the scheduler issue is resolved.
-- `UNSUPPORTED`: explain why the job is intentionally absent and say that no remediation is required unless the project stack or runtime support changed.
-
-Render the report in grouped sections using the shared `scripts/automation-status-report.mjs` contract:
-
-```text
-Overall verdict: <VERDICT>
-Counts: <n HEALTHY>, <n MISSING>, <n UNSUPPORTED>, <n DRIFTED>, <n STALE>, <n FAILING>
-Runtime inspected: <runtime surface>
-Generated at: <ISO timestamp>
-
-1. <group title>
-- <STATUS> <automation-id>: <summary>
-  Expected: <cadence> -> <command>
-  Observed: <what the runtime exposed>
-  Remediation: <next step when attention is needed>
-```
-
-Keep observable runtime facts separate from remediation guidance so operators can distinguish drift, unsupported jobs, and actual failures quickly.
-
-## Rules
-
-- Stay **read-only**. Never create, update, delete, enable, disable, or rerun automations from this skill.
-- Reuse `setup-automations` contract logic for expected fleet resolution, cadence, queue arguments, naming, and stack-specific support checks.
-- Distinguish **unsupported** from **missing**. An exploratory job omitted because the current stack lacks `exploratory-qa` is not a failure.
-- If the runtime cannot expose a field such as last-run timestamp or failure state, say that explicitly instead of implying health.
-- Keep the output operational and repo-scoped so operators can tell whether Lisa's unattended surfaces are present, current, and healthy right now.

package/plugins/lisa-copilot/skills/bug-triage/SKILL.md

@@ -1,23 +0,0 @@
----
-name: bug-triage
-description: "8-step bug triage and implementation workflow. Ensures bugs are reproducible, root-caused, and fixable before implementation begins."
----
-
-# Bug Triage
-
-Follow this 8-step triage process before implementing any bug fix. Do not skip triage.
-
-## Triage Steps
-
-1. Verify you have all information needed to reproduce the bug (authentication requirements, environment information, etc.). Do not make assumptions. If anything is missing, stop and ask before proceeding.
-2. Reproduce the bug. If you cannot reproduce it, stop and report what you tried and what you observed.
-3. Once reproduced, verify you are 100% positive on how to fix it. If not, determine what you need to do to be 100% positive (e.g. add logging, trace the code path, inspect state) and do that first.
-4. Verify you have access to the tools, environments, and permissions needed to deploy and verify this fix (e.g. CI/CD pipelines, deployment targets, logging/monitoring systems, API access, database access). If any are missing or inaccessible, stop and raise them before starting implementation.
-5. Define the tests you will write to confirm the fix and prevent a regression.
-6. Define the documentation you will create or update to explain this bug so another developer understands the "how" and "what" behind it.
-7. If you can verify your fix before deploying to the target environment (e.g. start the app, invoke the API, open a browser, run the process, check logs), do so before deploying.
-8. Define how you will verify the fix beyond a shadow of a doubt (e.g. deploy to the target environment, invoke the API, open a browser, run the process, check logs).
-
-## Implementation
-
-Use the output of the triage steps above as your guide. Do not skip triage.

package/plugins/lisa-copilot/skills/codebase-research/SKILL.md

@@ -1,87 +0,0 @@
----
-name: codebase-research
-description: "Codebase exploration and architecture analysis. Read files, trace data flow, identify modification points, map dependencies, find reusable code, evaluate design patterns."
----
-
-# Codebase Research
-
-Systematically explore and analyze a codebase to understand its architecture, trace data flow, and identify how to make changes safely.
-
-## Analysis Process
-
-Follow these steps in order. Do not skip steps or propose changes to code you have not read.
-
-### 1. Read Referenced Files
-
-- Read every file that is directly relevant to the task
-- Understand the current architecture before proposing changes
-- Read imports and dependencies to understand the module graph
-- Check for configuration files that affect behavior (tsconfig, eslint, webpack, etc.)
-
-### 2. Trace Data Flow
-
-- Follow the path from entry point to output for the affected feature
-- Identify every transformation the data undergoes
-- Map inputs, intermediate states, and outputs
-- Note where data crosses boundaries (API calls, database queries, message queues)
-
-### 3. Identify Modification Points
-
-- Determine which files, functions, and interfaces need changes
-- Note the exact lines where modifications are required
-- Identify any type definitions, schemas, or contracts that must be updated
-- Check for generated code that may need regeneration
-
-### 4. Map Dependencies
-
-- Identify what depends on the code being changed (downstream consumers)
-- Identify what the code being changed depends on (upstream providers)
-- Determine the safe modification order to avoid breaking intermediate states
-- Flag any circular dependencies
-
-### 5. Check for Reusable Code
-
-- Search for existing utilities, helpers, or patterns that apply to the task
-- Check shared libraries and common modules
-- Look for similar implementations elsewhere in the codebase that can be referenced
-- Prefer reusing existing code over creating new abstractions
-
-### 6. Evaluate Design Patterns
-
-- Match the codebase's existing patterns -- do not introduce new architectural patterns without reason
-- Check naming conventions, file organization, and code style
-- Identify any patterns that are partially implemented and should be completed
-- Note anti-patterns that should not be propagated
-
-## Output Format
-
-```text
-## Architecture Analysis
-
-### Files to Create
-- `path/to/file.ts` -- purpose
-
-### Files to Modify
-- `path/to/file.ts:L42-L68` -- what changes and why
-
-### Dependency Graph
-- [file A] -> [file B] -> [file C] (modification order)
-
-### Design Decisions
-| Decision | Choice | Rationale |
-|----------|--------|-----------|
-
-### Reusable Code
-- `path/to/util.ts:functionName` -- how it applies
-
-### Risks
-- [risk description] -- [mitigation]
-```
-
-## Rules
-
-- Always read files before recommending changes to them
-- Follow existing patterns in the codebase -- do not introduce new architectural patterns unless explicitly required
-- Include file:line references for all recommendations
-- Flag breaking changes explicitly
-- Keep the modification surface area as small as possible