@codified/cli 0.3.5 → 0.3.6

package/dist/commands/up.js

@@ -0,0 +1,312 @@
+// codify up — one-command setup: init -> bootstrap -> start
+//
+// Smart step-skipping: checks infrastructure and graph state before each step
+// so it's safe to run repeatedly (idempotent).
+import { Command } from "commander";
+import { existsSync } from "node:fs";
+import { resolve } from "node:path";
+import { spawnSync } from "node:child_process";
+import { loadProjectConfig } from "../lib/config.js";
+// ANSI helpers
+const dim = (s) => `\x1b[2m${s}\x1b[0m`;
+const green = (s) => `\x1b[32m${s}\x1b[0m`;
+const cyan = (s) => `\x1b[36m${s}\x1b[0m`;
+const bold = (s) => `\x1b[1m${s}\x1b[0m`;
+export const upCommand = new Command("up")
+    .description("Set up and start Codify in one command (init + bootstrap + start)")
+    .option("--skip-bootstrap", "Skip the bootstrap step")
+    .option("--yes", "Non-interactive mode (pass through to init and bootstrap)")
+    .option("--limit <n>", "Maximum commits for bootstrap", "200")
+    .action(async (opts) => {
+    try {
+        const cwd = process.cwd();
+        console.log(`\n  ${bold("Codify \u2014 Up")}\n`);
+        // ── Step 1/3: Infrastructure ──────────────────────────────────
+        console.log(`  ${cyan("Step 1/3: Infrastructure")}`);
+        const configDir = resolve(cwd, ".codify");
+        const configExists = existsSync(resolve(configDir, "config.json"));
+        let infraReady = false;
+        if (configExists) {
+            // Config exists — check if PostgreSQL is reachable
+            await loadProjectConfig();
+            try {
+                const { getPool } = await import("@codify/graph");
+                const pool = getPool();
+                await pool.query("SELECT 1");
+                infraReady = true;
+            }
+            catch {
+                // PostgreSQL not reachable — need init
+            }
+        }
+        if (infraReady) {
+            console.log(`    ${green("\u2713")} Infrastructure ready ${dim("(skipping init)")}`);
+        }
+        else {
+            console.log(`    Running ${bold("codify init")}...`);
+            // Build the init command with passthrough flags
+            const initArgs = ["init"];
+            if (opts.yes)
+                initArgs.push("--yes");
+            // Run init as a subprocess so we get the full init flow
+            // (Docker setup, migrations, MCP registration, etc.)
+            const codifyPath = resolve(process.argv[1]);
+            const result = spawnSync(process.execPath, [codifyPath, ...initArgs], {
+                cwd,
+                stdio: "inherit",
+                env: process.env,
+            });
+            if (result.status !== 0) {
+                console.error(`\n  ${bold("Init failed.")} Fix the errors above and try again.\n`);
+                process.exit(1);
+            }
+            // Reload config after init
+            await loadProjectConfig();
+            console.log(`    ${green("\u2713")} Infrastructure initialized`);
+        }
+        // ── Step 2/3: Bootstrap ───────────────────────────────────────
+        console.log(`\n  ${cyan("Step 2/3: Bootstrap")}`);
+        if (opts.skipBootstrap) {
+            console.log(`    ${dim("\u2013")} Skipped ${dim("(--skip-bootstrap)")}`);
+        }
+        else {
+            // Check if graph already has data
+            let nodeCount = 0;
+            try {
+                const { getPool } = await import("@codify/graph");
+                const pool = getPool();
+                const { rows } = await pool.query("SELECT COUNT(*)::int AS count FROM nodes");
+                nodeCount = rows[0]?.count ?? 0;
+            }
+            catch {
+                // If we can't query, we'll try bootstrap and let it fail with a clear message
+            }
+            if (nodeCount > 0) {
+                console.log(`    ${green("\u2713")} Graph already populated: ${bold(String(nodeCount))} nodes ${dim("(skipping bootstrap)")}`);
+            }
+            else {
+                // Check we're in a git repo
+                const gitCheck = spawnSync("git", ["rev-parse", "--is-inside-work-tree"], {
+                    cwd,
+                    stdio: "pipe",
+                });
+                if (gitCheck.status !== 0) {
+                    console.log(`    ${dim("\u2013")} Not a git repository ${dim("(skipping bootstrap)")}`);
+                }
+                else {
+                    const limit = opts.limit;
+                    console.log(`    Bootstrapping git history (limit: ${bold(limit)})...`);
+                    console.log("");
+                    // Run bootstrap as a subprocess for clean output
+                    const codifyPath = resolve(process.argv[1]);
+                    const bootstrapArgs = ["bootstrap", "--limit", limit, "--yes"];
+                    const result = spawnSync(process.execPath, [codifyPath, ...bootstrapArgs], {
+                        cwd,
+                        stdio: "inherit",
+                        env: process.env,
+                    });
+                    if (result.status !== 0) {
+                        console.error(`\n  ${bold("Bootstrap failed.")} You can retry with: codify bootstrap\n`);
+                        process.exit(1);
+                    }
+                    // Get final node count
+                    try {
+                        const { getPool } = await import("@codify/graph");
+                        const pool = getPool();
+                        const { rows } = await pool.query("SELECT COUNT(*)::int AS count FROM nodes");
+                        const finalCount = rows[0]?.count ?? 0;
+                        console.log(`    ${green("\u2713")} Graph populated: ${bold(String(finalCount))} nodes`);
+                    }
+                    catch {
+                        console.log(`    ${green("\u2713")} Bootstrap complete`);
+                    }
+                }
+            }
+        }
+        // ── Step 3/3: MCP Server ──────────────────────────────────────
+        console.log(`\n  ${cyan("Step 3/3: MCP Server")}`);
+        console.log(`    Starting MCP server on stdio...`);
+        console.log("");
+        // Hand off to start — this runs in-process since the MCP server
+        // needs to stay alive on stdio. We import and execute the same
+        // logic that `codify start` uses.
+        await loadProjectConfig();
+        const { getPool, closePool } = await import("@codify/graph");
+        const { createEventBus } = await import("@codify/events");
+        const { startGapEngine, CollectionPlanner } = await import("@codify/agents");
+        const { MetabolismService } = await import("@codify/metabolism");
+        const { GraphServiceAdapter } = await import("@codify/app");
+        // Connect to PostgreSQL
+        const pool = getPool();
+        const { rows } = await pool.query("SELECT 1 AS ok");
+        if (rows[0]?.ok !== 1) {
+            console.error("  Failed to connect to PostgreSQL.");
+            process.exit(1);
+        }
+        console.error(`  ${green("\u2713")} PostgreSQL connected`);
+        // Set up graph service
+        const graphService = new GraphServiceAdapter();
+        // Connect event bus
+        const eventBus = await createEventBus({
+            servers: process.env.NATS_URL ?? "nats://localhost:4222",
+        });
+        console.error(`  ${green("\u2713")} NATS connected`);
+        // Start background services
+        const gapEngine = await startGapEngine();
+        const metabolism = new MetabolismService(eventBus);
+        await metabolism.start();
+        // Start collection planner
+        const collectionPlanner = new CollectionPlanner(eventBus);
+        await collectionPlanner.start();
+        // Auto-collection subscriber: mine graph for evidence when gaps are detected
+        {
+            const { collectEvidenceForGap } = await import("./collect.js");
+            let lastCollectionTime = 0;
+            let collectionsThisMinute = 0;
+            let minuteStart = Date.now();
+            eventBus.subscriber.subscribe("gap.detected.>", async (event) => {
+                const ev = event;
+                if (!ev.gapNodeId)
+                    return;
+                const now = Date.now();
+                if (now - minuteStart > 60_000) {
+                    collectionsThisMinute = 0;
+                    minuteStart = now;
+                }
+                if (collectionsThisMinute >= 10)
+                    return;
+                if (now - lastCollectionTime < 5_000)
+                    return;
+                collectionsThisMinute++;
+                lastCollectionTime = now;
+                try {
+                    const affectedResult = await pool.query(`SELECT n.id, n.type, n.properties, n.metadata
+                 FROM nodes n
+                 JOIN edges e ON (e.source_id = n.id OR e.target_id = n.id)
+                 WHERE (e.source_id = $1 OR e.target_id = $1)
+                   AND n.id != $1
+                   AND n.superseded_by IS NULL
+                 GROUP BY n.id, n.type, n.properties, n.metadata`, [ev.gapNodeId]);
+                    const affectedNodes = affectedResult.rows.map((r) => {
+                        const p = r.properties ?? {};
+                        const m = r.metadata ?? {};
+                        return {
+                            id: r.id,
+                            type: r.type,
+                            title: p.title ?? m.title ??
+                                p.name ?? m.name ?? "(untitled)",
+                        };
+                    });
+                    if (affectedNodes.length === 0)
+                        return;
+                    const { evidenceNodes } = await collectEvidenceForGap(pool, ev.gapNodeId, affectedNodes);
+                    if (evidenceNodes.length > 0) {
+                        await pool.query(`UPDATE nodes
+                   SET properties = jsonb_set(properties, '{status}', '"evidence_found"'),
+                       updated_at = now()
+                   WHERE id = $1
+                     AND COALESCE(properties->>'status', 'detected') = 'detected'`, [ev.gapNodeId]);
+                        const gapResult = await pool.query(`SELECT properties FROM nodes WHERE id = $1`, [ev.gapNodeId]);
+                        const gapTitle = gapResult.rows[0]?.properties?.title ??
+                            gapResult.rows[0]?.properties?.description?.slice(0, 50) ?? ev.gapNodeId.slice(0, 12);
+                        console.error(`[collection] Auto-collected ${evidenceNodes.length} evidence node${evidenceNodes.length === 1 ? "" : "s"} for gap: ${gapTitle}`);
+                    }
+                }
+                catch (err) {
+                    console.error(`[collection] Auto-collection error: ${err instanceof Error ? err.message : String(err)}`);
+                }
+            }, { group: "auto-collector" });
+            console.error("  \u2713 Auto-collection subscriber ready");
+        }
+        // Wire up bootstrap and graph stats functions
+        const { createIngestService } = await import("@codify/agents");
+        const bootstrapFn = async (repoPath) => {
+            const ingest = await createIngestService({
+                minerBatchSize: 10,
+                enableDedup: true,
+                autoPromoteThreshold: 0.7,
+            });
+            await ingest.registry.connect("local-git", {
+                type: "local",
+                credentials: { repoPath },
+            });
+            const startTime = Date.now();
+            const result = await ingest.bootstrap.run("local-git");
+            return {
+                connectorId: "local-git",
+                totalArtifacts: result.totalArtifacts,
+                nodesCreated: result.pipeline.created.length,
+                nodesMerged: result.pipeline.merged.length,
+                durationMs: Date.now() - startTime,
+            };
+        };
+        const graphStatsFn = async () => {
+            const { query } = await import("@codify/graph");
+            const [nodeStats, edgeCount, gapCount, freshnessAvg, oldestNewest] = await Promise.all([
+                query("SELECT type, COUNT(*)::int as count FROM nodes WHERE superseded_by IS NULL GROUP BY type"),
+                query("SELECT COUNT(*)::int as count FROM edges"),
+                query("SELECT COUNT(*)::int as count FROM nodes WHERE type = 'Gap' AND superseded_by IS NULL"),
+                query("SELECT COALESCE(AVG(freshness), 0)::float as avg FROM nodes WHERE superseded_by IS NULL"),
+                query("SELECT MIN(created_at) as oldest, MAX(created_at) as newest FROM nodes WHERE superseded_by IS NULL"),
+            ]);
+            const nodesByType = {};
+            let totalNodes = 0;
+            for (const row of nodeStats.rows) {
+                nodesByType[row.type] = row.count;
+                totalNodes += row.count;
+            }
+            const layerStats = await query("SELECT layer, COUNT(*)::int as count FROM nodes WHERE superseded_by IS NULL GROUP BY layer");
+            const nodesByLayer = {};
+            for (const row of layerStats.rows) {
+                nodesByLayer[row.layer] = row.count;
+            }
+            return {
+                totalNodes,
+                totalEdges: edgeCount.rows[0]?.count ?? 0,
+                nodesByType,
+                nodesByLayer,
+                avgFreshness: freshnessAvg.rows[0]?.avg ?? 0,
+                gapCount: gapCount.rows[0]?.count ?? 0,
+                oldestNode: oldestNewest.rows[0]?.oldest?.toISOString() ?? null,
+                newestNode: oldestNewest.rows[0]?.newest?.toISOString() ?? null,
+            };
+        };
+        // Start MCP server on stdio
+        const { startMcpStdio } = await import("@codify/api");
+        await startMcpStdio(graphService, {
+            bootstrapFn,
+            graphStatsFn,
+            collectionPlannerFn: () => collectionPlanner.listPlans(),
+            gapQueueFn: (filters) => gapEngine.gapQueue.listGaps(filters),
+        });
+        console.error(`  ${green("\u2713")} MCP server ready on stdio`);
+        // Graceful shutdown
+        const shutdown = async (signal) => {
+            console.error(`[codify] Shutting down (${signal})...`);
+            try {
+                await metabolism.stop();
+                await gapEngine.stop();
+                await eventBus.close();
+                await closePool();
+                process.exit(0);
+            }
+            catch {
+                process.exit(1);
+            }
+        };
+        process.on("SIGINT", () => shutdown("SIGINT"));
+        process.on("SIGTERM", () => shutdown("SIGTERM"));
+    }
+    catch (err) {
+        const message = err instanceof Error ? err.message : String(err);
+        if (message.includes("ECONNREFUSED")) {
+            console.error("\n  ERROR: Cannot connect to Codify services.");
+            console.error("  Make sure Docker is running and try again.\n");
+        }
+        else {
+            console.error(`\n  ERROR: ${message}\n`);
+        }
+        process.exit(1);
+    }
+});
+//# sourceMappingURL=up.js.map

package/dist/commands/up.js.map

@@ -0,0 +1 @@
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package/dist/commands/watch.d.ts

@@ -0,0 +1,3 @@
+import { Command } from "commander";
+export declare const watchCommand: Command;
+//# sourceMappingURL=watch.d.ts.map

package/dist/commands/watch.d.ts.map

@@ -0,0 +1 @@
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package/dist/commands/watch.js

@@ -0,0 +1,224 @@
+// codify watch — continuous ingest polling loop
+//
+// Polls all connected connectors at a configurable interval,
+// running incremental sync to keep the context graph up to date.
+import { Command } from "commander";
+import { loadProjectConfig, loadConnectors, updateConnectorSyncTime } from "../lib/config.js";
+/**
+ * Build a ConnectorAuthConfig from a persisted ConnectorEntry.
+ * Translates the stored credentials format into the auth config
+ * that each connector's authenticate() method expects.
+ */
+function buildAuthConfig(entry) {
+    switch (entry.type) {
+        case "slack": {
+            const creds = {
+                token: entry.credentials.token,
+                channels: entry.credentials.channels.join(","),
+            };
+            return {
+                type: "slack",
+                token: entry.credentials.token,
+                credentials: creds,
+            };
+        }
+        case "github": {
+            const repos = entry.credentials.repos;
+            const [first] = repos;
+            const [owner, repo] = first.split("/");
+            return {
+                type: "github",
+                token: entry.credentials.token,
+                credentials: { owner, repo },
+            };
+        }
+        case "linear": {
+            const creds = {
+                token: entry.credentials.apiKey,
+            };
+            if (entry.credentials.team) {
+                creds.teams = String(entry.credentials.team);
+            }
+            return {
+                type: "linear",
+                token: entry.credentials.apiKey,
+                credentials: creds,
+            };
+        }
+        case "notion":
+            return {
+                type: "notion",
+                token: entry.credentials.token,
+                credentials: {
+                    token: entry.credentials.token,
+                },
+            };
+        default:
+            throw new Error(`Unknown connector type: ${entry.type}`);
+    }
+}
+export const watchCommand = new Command("watch")
+    .description("Start continuous ingest — poll connectors for new data")
+    .option("--interval <minutes>", "Poll interval in minutes (default: 15)", "15")
+    .action(async (opts) => {
+    try {
+        const cwd = process.cwd();
+        const intervalMinutes = parseInt(opts.interval, 10);
+        if (isNaN(intervalMinutes) || intervalMinutes < 1) {
+            console.error("  ERROR: --interval must be a positive integer (minutes).\n");
+            process.exit(1);
+        }
+        const intervalMs = intervalMinutes * 60 * 1000;
+        console.log("\n  Codify Watch — Continuous Ingest\n");
+        console.log(`  Poll interval: ${intervalMinutes} minute${intervalMinutes === 1 ? "" : "s"}`);
+        // Load project config (.codify/config.json → env vars)
+        await loadProjectConfig();
+        // 1. Connect to database
+        const { getPool, closePool } = await import("@codify/graph");
+        const pool = getPool();
+        try {
+            await pool.query("SELECT 1");
+        }
+        catch {
+            console.error("  ERROR: Cannot connect to PostgreSQL. Run 'codify init' first.\n");
+            process.exit(1);
+        }
+        console.log("  ✓ PostgreSQL connected");
+        // 2. Connect to NATS
+        const { createEventBus } = await import("@codify/events");
+        const eventBus = await createEventBus({
+            servers: process.env.NATS_URL ?? "nats://localhost:4222",
+        });
+        console.log("  ✓ NATS connected");
+        // 3. Create IngestService
+        const { createIngestService } = await import("@codify/agents");
+        const ingest = await createIngestService({
+            minerBatchSize: 10,
+            enableDedup: true,
+            autoPromoteThreshold: 0.7,
+        }, eventBus);
+        // Connect the local-git connector to the current project
+        await ingest.registry.connect("local-git", {
+            type: "local",
+            credentials: { repoPath: cwd },
+        });
+        console.log(`  ✓ Local git connector: ${cwd}`);
+        // Auto-load persisted connectors from .codify/config.json
+        const persistedConnectors = loadConnectors();
+        const connectorEntryMap = new Map();
+        for (const entry of persistedConnectors) {
+            try {
+                const authConfig = buildAuthConfig(entry);
+                await ingest.registry.connect(entry.type, authConfig);
+                connectorEntryMap.set(entry.type, entry);
+                console.log(`  ✓ ${entry.type} connector: ${entry.id}`);
+            }
+            catch (err) {
+                const message = err instanceof Error ? err.message : String(err);
+                console.error(`  WARNING: Failed to connect ${entry.id} (${entry.type}): ${message}`);
+            }
+        }
+        if (persistedConnectors.length > 0) {
+            console.log(`  Loaded ${persistedConnectors.length} persisted connector${persistedConnectors.length === 1 ? "" : "s"}`);
+        }
+        const connectorNames = ["local-git", ...persistedConnectors.map(c => c.id)];
+        console.log(`\n  Watching ${connectorNames.length} connector${connectorNames.length === 1 ? "" : "s"} (${connectorNames.join(", ")})`);
+        console.log("  Ctrl+C to stop\n");
+        // 4. Polling loop
+        let running = true;
+        const sessionStart = Date.now();
+        let totalArtifactsSynced = 0;
+        let lastSyncSummary = "none yet";
+        const poll = async () => {
+            const connectors = ingest.registry.list();
+            for (const connector of connectors) {
+                const connection = ingest.registry.getConnection(connector.id);
+                if (!connection)
+                    continue; // skip connectors that aren't connected
+                try {
+                    const result = await ingest.bootstrap.incrementalSync(connector.id);
+                    if (result.totalArtifacts > 0) {
+                        totalArtifactsSynced += result.totalArtifacts;
+                        lastSyncSummary = `${result.totalArtifacts} from ${connector.name}`;
+                        console.log(`  Synced ${result.totalArtifacts} artifact${result.totalArtifacts === 1 ? "" : "s"} from ${connector.name} ` +
+                            `(+${result.pipeline.created.length} created, +${result.pipeline.merged.length} merged) ` +
+                            `[${(result.durationMs / 1000).toFixed(1)}s]`);
+                    }
+                    else {
+                        console.log(`  ${connector.name}: no new data`);
+                    }
+                    // Update lastSyncAt for persisted connectors
+                    const persistedEntry = connectorEntryMap.get(connector.id);
+                    if (persistedEntry) {
+                        updateConnectorSyncTime(persistedEntry.id);
+                    }
+                }
+                catch (err) {
+                    const message = err instanceof Error ? err.message : String(err);
+                    console.error(`  ERROR syncing ${connector.name}: ${message}`);
+                }
+            }
+        };
+        // Run first poll immediately
+        await poll();
+        // Schedule subsequent polls
+        const timer = setInterval(async () => {
+            if (!running)
+                return;
+            const now = new Date().toLocaleTimeString();
+            console.log(`\n  [${now}] Polling...`);
+            await poll();
+        }, intervalMs);
+        // Heartbeat: show status every 60 seconds
+        const heartbeat = setInterval(() => {
+            if (!running)
+                return;
+            const now = new Date().toLocaleTimeString();
+            const elapsed = Math.round((Date.now() - sessionStart) / 1000);
+            const nextPollIn = Math.max(0, intervalMinutes * 60 - (elapsed % (intervalMinutes * 60)));
+            const nextMins = Math.floor(nextPollIn / 60);
+            const nextSecs = nextPollIn % 60;
+            const nextStr = nextMins > 0 ? `${nextMins}m ${nextSecs}s` : `${nextSecs}s`;
+            console.log(`  [${now}] Watching... next poll in ${nextStr} (last sync: ${lastSyncSummary})`);
+        }, 60_000);
+        // 5. Handle SIGINT gracefully
+        const shutdown = async (signal) => {
+            running = false;
+            clearInterval(timer);
+            clearInterval(heartbeat);
+            const sessionDuration = Math.round((Date.now() - sessionStart) / 1000);
+            const mins = Math.floor(sessionDuration / 60);
+            const secs = sessionDuration % 60;
+            const durationStr = mins > 0 ? `${mins}m ${secs}s` : `${secs}s`;
+            console.log(`\n  [codify watch] Shutting down (${signal})...`);
+            console.log(`  Session: ${durationStr}, ${totalArtifactsSynced} artifact${totalArtifactsSynced === 1 ? "" : "s"} synced`);
+            try {
+                await eventBus.close();
+                await closePool();
+                console.log("  Clean shutdown\n");
+                process.exit(0);
+            }
+            catch {
+                process.exit(1);
+            }
+        };
+        process.on("SIGINT", () => shutdown("SIGINT"));
+        process.on("SIGTERM", () => shutdown("SIGTERM"));
+    }
+    catch (err) {
+        const message = err instanceof Error ? err.message : String(err);
+        if (message.includes("ECONNREFUSED")) {
+            console.error("\n  ERROR: Cannot connect to Codify services.");
+            console.error("  Run 'codify init' to start the infrastructure.\n");
+        }
+        else if (message.includes("ANTHROPIC_API_KEY")) {
+            console.error("\n  ERROR: ANTHROPIC_API_KEY not set.");
+            console.error("  Export your API key: export ANTHROPIC_API_KEY=sk-...\n");
+        }
+        else {
+            console.error(`\n  ERROR: ${message}\n`);
+        }
+        process.exit(1);
+    }
+});
+//# sourceMappingURL=watch.js.map

package/dist/commands/watch.js.map

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package/dist/index.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":""}