@codeyam/codeyam-cli 0.1.0-staging.e38f7bd → 0.1.0

package/codeyam-cli/src/utils/rules/staleness.js

@@ -0,0 +1,137 @@
+// Staleness detection for Claude Rules
+import fs from 'fs/promises';
+import path from 'path';
+import { minimatch } from 'minimatch';
+import { getRuleLastAuditedAt } from "./ruleState.js";
+/**
+ * Find all files matching glob patterns under a directory
+ */
+async function findMatchingFiles(patterns, projectRoot) {
+    const matches = [];
+    async function walkDir(dir, relativePath) {
+        try {
+            const entries = await fs.readdir(dir, { withFileTypes: true });
+            for (const entry of entries) {
+                const fullPath = path.join(dir, entry.name);
+                const relPath = relativePath
+                    ? `${relativePath}/${entry.name}`
+                    : entry.name;
+                // Skip common non-source directories
+                if (entry.isDirectory() &&
+                    (entry.name === 'node_modules' ||
+                        entry.name === '.git' ||
+                        entry.name === 'dist' ||
+                        entry.name === '.codeyam' ||
+                        entry.name === '.claude')) {
+                    continue;
+                }
+                if (entry.isDirectory()) {
+                    await walkDir(fullPath, relPath);
+                }
+                else if (entry.isFile()) {
+                    // Check if file matches any pattern
+                    for (const pattern of patterns) {
+                        if (minimatch(relPath, pattern, { matchBase: true })) {
+                            matches.push(relPath);
+                            break;
+                        }
+                    }
+                }
+            }
+        }
+        catch {
+            // Directory not readable, skip
+        }
+    }
+    await walkDir(projectRoot, '');
+    return matches;
+}
+/**
+ * Get the most recent modification time from a list of files
+ */
+async function getNewestFileTime(files, projectRoot) {
+    let newestTime = null;
+    let newestPath = null;
+    for (const file of files) {
+        try {
+            const stat = await fs.stat(path.join(projectRoot, file));
+            if (!newestTime || stat.mtime > newestTime) {
+                newestTime = stat.mtime;
+                newestPath = file;
+            }
+        }
+        catch {
+            // File not accessible, skip
+        }
+    }
+    return { newestPath, newestTime };
+}
+/**
+ * Check if a single rule is stale.
+ * Reads lastAuditedAt from ruleState instead of frontmatter.
+ */
+export async function checkRuleStaleness(rule, projectRoot, ruleState) {
+    // Get rule lastAuditedAt from state (or null if not provided / not found)
+    let ruleTimestamp = null;
+    if (ruleState) {
+        const ts = getRuleLastAuditedAt(ruleState, rule.filePath);
+        if (ts) {
+            const parsed = new Date(ts);
+            if (!isNaN(parsed.getTime())) {
+                ruleTimestamp = parsed;
+            }
+        }
+    }
+    // If no paths defined, rule is not stale (nothing to compare against)
+    if (!rule.frontmatter.paths || rule.frontmatter.paths.length === 0) {
+        return {
+            rule,
+            isStale: false,
+            ruleTimestamp,
+            newestFileModified: null,
+            newestFilePath: null,
+        };
+    }
+    // Find all files matching the rule's patterns
+    const matchingFiles = await findMatchingFiles(rule.frontmatter.paths, projectRoot);
+    // If no files match, rule is not stale
+    if (matchingFiles.length === 0) {
+        return {
+            rule,
+            isStale: false,
+            ruleTimestamp,
+            newestFileModified: null,
+            newestFilePath: null,
+        };
+    }
+    // Get the newest file modification time
+    const { newestPath, newestTime } = await getNewestFileTime(matchingFiles, projectRoot);
+    // Determine if stale: rule is stale if newest file is newer than lastAuditedAt
+    // If rule has no lastAuditedAt, it's considered stale
+    let isStale = false;
+    if (!ruleTimestamp) {
+        isStale = true;
+    }
+    else if (newestTime && newestTime > ruleTimestamp) {
+        isStale = true;
+    }
+    return {
+        rule,
+        isStale,
+        ruleTimestamp,
+        newestFileModified: newestTime,
+        newestFilePath: newestPath,
+    };
+}
+/**
+ * Check all rules for staleness
+ */
+export async function getAllStaleRules(rules, projectRoot, ruleState) {
+    const results = [];
+    for (const rule of rules) {
+        const result = await checkRuleStaleness(rule, projectRoot, ruleState);
+        results.push(result);
+    }
+    return results;
+}
+//# sourceMappingURL=staleness.js.map

package/codeyam-cli/src/utils/rules/staleness.js.map

@@ -0,0 +1 @@
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package/codeyam-cli/src/utils/serverState.js

@@ -53,21 +53,48 @@ export function isProcessRunning(pid) {
  */
 export function findCodeYamProcesses() {
     try {
-        // Use ps to find processes with 'codeyam-server' in the command
-        const output = execSync('ps aux | grep codeyam-server | grep -v grep', {
+        const isWindows = process.platform === 'win32';
+        const command = isWindows
+            ? 'tasklist /FI "IMAGENAME eq node.exe" /FO CSV /NH'
+            : 'ps aux | grep codeyam-server | grep -v grep';
+        const output = execSync(command, {
             encoding: 'utf8',
+            stdio: ['pipe', 'pipe', 'pipe'],
         }).trim();
         if (!output)
             return [];
-        // Parse ps output to extract PIDs
         const pids = [];
-        for (const line of output.split('\n')) {
-            // ps aux format: USER PID %CPU %MEM VSZ RSS TTY STAT START TIME COMMAND
-            const parts = line.trim().split(/\s+/);
-            if (parts.length >= 2) {
-                const pid = parseInt(parts[1], 10);
-                if (!isNaN(pid)) {
-                    pids.push(pid);
+        if (isWindows) {
+            // tasklist CSV format: "node.exe","12345","Console","1","50,000 K"
+            // We get all node processes, then filter by checking their command line
+            for (const line of output.split('\n')) {
+                const match = line.match(/"[^"]*","(\d+)"/);
+                if (match) {
+                    const pid = parseInt(match[1], 10);
+                    if (!isNaN(pid)) {
+                        // Check if this node process is a codeyam-server
+                        try {
+                            const cmdline = execSync(`wmic process where "ProcessId=${pid}" get CommandLine /FORMAT:LIST`, { encoding: 'utf8', stdio: ['pipe', 'pipe', 'pipe'] });
+                            if (cmdline.includes('codeyam-server')) {
+                                pids.push(pid);
+                            }
+                        }
+                        catch {
+                            // Can't inspect this process, skip it
+                        }
+                    }
+                }
+            }
+        }
+        else {
+            for (const line of output.split('\n')) {
+                // ps aux format: USER PID %CPU %MEM VSZ RSS TTY STAT START TIME COMMAND
+                const parts = line.trim().split(/\s+/);
+                if (parts.length >= 2) {
+                    const pid = parseInt(parts[1], 10);
+                    if (!isNaN(pid)) {
+                        pids.push(pid);
+                    }
                 }
             }
         }

package/codeyam-cli/src/utils/serverState.js.map

@@ -1 +1 @@
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package/codeyam-cli/src/utils/setupClaudeCodeSettings.js

@@ -3,13 +3,15 @@ import * as path from 'path';
 /**
  * Configure Claude Code settings to auto-approve CodeYam skills and commands
  *
- * Adds CodeYam skills and CLI commands explicitly to the allow list in .claude/settings.local.json
- * This prevents Claude from asking permission every time it uses CodeYam
+ * In memory mode (default), only memory-related permissions are added.
+ * In full mode, simulation permissions are also added.
  *
  * @param projectRoot - The root directory of the project
+ * @param options - Configuration options (mode defaults to 'memory')
  * @returns True if successfully configured, false otherwise
  */
-export function setupClaudeCodeSettings(projectRoot) {
+export function setupClaudeCodeSettings(projectRoot, options) {
+    const mode = options?.mode ?? 'memory';
     try {
         const claudeDir = path.join(projectRoot, '.claude');
         const settingsPath = path.join(claudeDir, 'settings.local.json');
@@ -35,27 +37,32 @@ export function setupClaudeCodeSettings(projectRoot) {
         if (!settings.permissions.allow) {
             settings.permissions.allow = [];
         }
-        // Add CodeYam skills and CLI commands to allow list
-        const codeyamPermissions = [
-            // Skills
-            'Skill(codeyam-setup)',
-            'Skill(codeyam-sim)',
-            'Skill(codeyam-debug)',
-            'Skill(codeyam-test)',
-            'Skill(codeyam-verify)',
-            // CodeYam CLI commands
+        // Memory permissions — always included
+        const memoryPermissions = [
+            'Skill(codeyam-memory)',
+            'Skill(codeyam-new-rule)',
             'Bash(codeyam)',
             'Bash(codeyam:*)',
-            // File operations for .codeyam directory
             'Read(.codeyam/**)',
             'Edit(.codeyam/**)',
             'Write(.codeyam/**)',
             'Glob(.codeyam/**)',
+        ];
+        // Simulation permissions — only in full mode
+        const simulationPermissions = [
+            'Skill(codeyam-setup)',
+            'Skill(codeyam-sim)',
+            'Skill(codeyam-debug)',
+            'Skill(codeyam-test)',
+            'Skill(codeyam-verify)',
             'Read(/tmp/codeyam/**)',
             'Edit(/tmp/codeyam/**)',
             'Write(/tmp/codeyam/**)',
             'Glob(/tmp/codeyam/**)',
         ];
+        const codeyamPermissions = mode === 'full'
+            ? [...memoryPermissions, ...simulationPermissions]
+            : memoryPermissions;
         let updated = false;
         for (const permission of codeyamPermissions) {
             if (!settings.permissions.allow.includes(permission)) {
@@ -63,35 +70,7 @@ export function setupClaudeCodeSettings(projectRoot) {
                 updated = true;
             }
         }
-        // // Configure Stop hook for automatic verification
-        // if (!settings.hooks) {
-        //   settings.hooks = {};
-        // }
-        // if (!settings.hooks.Stop) {
-        //   settings.hooks.Stop = [];
-        // }
-        // // Install CodeYam stop hook that returns JSON to trigger verification
-        // const hookScriptPath = path.join(
-        //   projectRoot,
-        //   '.codeyam',
-        //   'bin',
-        //   'codeyam-stop-hook.sh',
-        // );
-        // const hookExists = settings.hooks.Stop.some((hook: any) =>
-        //   hook.hooks?.some((h: any) => h.command?.includes('codeyam-stop-hook.sh')),
-        // );
-        // if (!hookExists) {
-        //   settings.hooks.Stop.push({
-        //     hooks: [
-        //       {
-        //         type: 'command',
-        //         command: `bash "${hookScriptPath}"`,
-        //       },
-        //     ],
-        //   });
-        //   updated = true;
-        // }
-        // Write updated settings if any permissions or hooks were added
+        // Write updated settings if any permissions were added
         if (updated) {
             fs.writeFileSync(settingsPath, JSON.stringify(settings, null, 2), 'utf8');
             return true;

package/codeyam-cli/src/utils/setupClaudeCodeSettings.js.map

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package/codeyam-cli/src/utils/versionInfo.js

@@ -25,13 +25,6 @@ function findCliPackageRoot() {
     }
     return null;
 }
-/**
- * Find the CLI package.json to get the version
- */
-function findCliPackageJson() {
-    const root = findCliPackageRoot();
-    return root ? path.join(root, 'package.json') : null;
-}
 /**
  * Read build info from a .build-info.json file
  */
@@ -47,22 +40,35 @@ function readBuildInfo(buildInfoPath) {
     }
 }
 /**
- * Get comprehensive version information for display
+ * Get the CLI version from webserver build-info.json (computed once at module load)
+ *
+ * Uses the webserver's semanticVersion (e.g., "0.1.486") which updates on every build,
+ * unlike package.json version which is static.
  */
-export function getVersionInfo(projectSlug) {
-    // Get CLI version from package.json
-    let cliVersion = 'unknown';
+function computeCliVersion() {
     const cliRoot = findCliPackageRoot();
-    const packageJsonPath = findCliPackageJson();
-    if (packageJsonPath) {
-        try {
-            const packageJson = JSON.parse(fs.readFileSync(packageJsonPath, 'utf8'));
-            cliVersion = packageJson.version || 'unknown';
-        }
-        catch {
-            // Use default
+    if (cliRoot) {
+        // Try multiple possible locations (dev vs installed package structure)
+        const possiblePaths = [
+            path.join(cliRoot, 'src/webserver/build-info.json'),
+            path.join(cliRoot, 'codeyam-cli/src/webserver/build-info.json'),
+        ];
+        for (const buildInfoPath of possiblePaths) {
+            const buildInfo = readBuildInfo(buildInfoPath);
+            if (buildInfo?.semanticVersion) {
+                return buildInfo.semanticVersion;
+            }
         }
     }
+    return 'unknown';
+}
+/** The CLI version string, e.g. "0.1.486" */
+export const cliVersion = computeCliVersion();
+/**
+ * Get comprehensive version information for display
+ */
+export function getVersionInfo(projectSlug) {
+    const cliRoot = findCliPackageRoot();
     // Get webserver build info
     // Try multiple possible locations (dev vs installed package structure)
     let webserverVersion = null;

package/codeyam-cli/src/utils/versionInfo.js.map

@@ -1 +1 @@
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package/codeyam-cli/src/utils/wipe.js

@@ -0,0 +1,128 @@
+import { getDatabase, updateProjectMetadata } from "../../../packages/database/index.js";
+/**
+ * Get counts of what would be deleted by a wipe operation.
+ * Used to show confirmation prompt before wipe.
+ */
+export async function getWipeStats(projectId) {
+    const db = getDatabase();
+    const [analyses, scenarios, entities, commits, files] = await Promise.all([
+        db
+            .selectFrom('analyses')
+            .select(db.fn.countAll().as('count'))
+            .where('project_id', '=', projectId)
+            .executeTakeFirst(),
+        db
+            .selectFrom('scenarios')
+            .select(db.fn.countAll().as('count'))
+            .where('project_id', '=', projectId)
+            .executeTakeFirst(),
+        db
+            .selectFrom('entities')
+            .select(db.fn.countAll().as('count'))
+            .where('project_id', '=', projectId)
+            .executeTakeFirst(),
+        db
+            .selectFrom('commits')
+            .select(db.fn.countAll().as('count'))
+            .where('project_id', '=', projectId)
+            .executeTakeFirst(),
+        db
+            .selectFrom('files')
+            .select(db.fn.countAll().as('count'))
+            .where('project_id', '=', projectId)
+            .executeTakeFirst(),
+    ]);
+    return {
+        analyses: Number(analyses?.count ?? 0),
+        scenarios: Number(scenarios?.count ?? 0),
+        entities: Number(entities?.count ?? 0),
+        commits: Number(commits?.count ?? 0),
+        files: Number(files?.count ?? 0),
+    };
+}
+/**
+ * Check if a project has any existing analyses.
+ * Used by baseline command to determine if wipe is needed.
+ */
+export async function hasExistingAnalyses(projectId) {
+    const db = getDatabase();
+    const result = await db
+        .selectFrom('analyses')
+        .select(db.fn.countAll().as('count'))
+        .where('project_id', '=', projectId)
+        .executeTakeFirst();
+    return Number(result?.count ?? 0) > 0;
+}
+/**
+ * Wipe all analysis data for a project.
+ *
+ * Deletes in order to respect foreign key constraints:
+ * 1. Analyses (scenarios cascade via FK)
+ * 2. Entities
+ * 3. Commits (but keeps _local branch structure)
+ * 4. Files
+ *
+ * Also resets project metadata (baselineCompleted, baselineStatus, baselineSha).
+ */
+export async function wipeProject(projectId) {
+    const db = getDatabase();
+    // Get counts before deletion for return value
+    const stats = await getWipeStats(projectId);
+    console.log('[wipe] Starting wipe for project', projectId);
+    // Delete in order respecting FK cascades
+    // 1. Analyses (scenarios will cascade automatically via FK)
+    console.log('[wipe] Deleting analyses...');
+    await db.deleteFrom('analyses').where('project_id', '=', projectId).execute();
+    // 2. Entities
+    console.log('[wipe] Deleting entities...');
+    await db.deleteFrom('entities').where('project_id', '=', projectId).execute();
+    // 3. Commits (keep _local branch structure, just delete commits)
+    console.log('[wipe] Deleting commits...');
+    await db.deleteFrom('commits').where('project_id', '=', projectId).execute();
+    // 4. Files
+    console.log('[wipe] Deleting files...');
+    await db.deleteFrom('files').where('project_id', '=', projectId).execute();
+    // Reset project metadata
+    console.log('[wipe] Resetting project metadata...');
+    await updateProjectMetadata({
+        projectId,
+        updateCallback: (metadata) => {
+            delete metadata.baselineCompleted;
+            delete metadata.baselineSha;
+        },
+    });
+    console.log('[wipe] Wipe completed');
+    return stats;
+}
+/**
+ * Format wipe stats for display.
+ */
+export function formatWipeStats(stats) {
+    const lines = [];
+    if (stats.entities > 0) {
+        lines.push(`  • ${stats.entities.toLocaleString()} entities`);
+    }
+    if (stats.analyses > 0) {
+        lines.push(`  • ${stats.analyses.toLocaleString()} analyses`);
+    }
+    if (stats.scenarios > 0) {
+        lines.push(`  • ${stats.scenarios.toLocaleString()} scenarios`);
+    }
+    if (stats.commits > 0) {
+        lines.push(`  • ${stats.commits.toLocaleString()} commits`);
+    }
+    if (stats.files > 0) {
+        lines.push(`  • ${stats.files.toLocaleString()} files`);
+    }
+    return lines.join('\n');
+}
+/**
+ * Check if wipe stats indicate there's something to delete.
+ */
+export function hasDataToWipe(stats) {
+    return (stats.analyses > 0 ||
+        stats.entities > 0 ||
+        stats.commits > 0 ||
+        stats.files > 0);
+}
+//# sourceMappingURL=wipe.js.map

package/codeyam-cli/src/utils/wipe.js.map

@@ -0,0 +1 @@
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package/codeyam-cli/src/webserver/__tests__/dependency-smoke.test.js

@@ -0,0 +1,66 @@
+/**
+ * General smoke test to catch dependency incompatibilities that would crash
+ * the server at startup. Auto-discovers all runtime dependencies from the
+ * webserver's package.json and verifies each can be loaded without errors.
+ *
+ * ESM-only packages (like react-markdown) are expected to fail require() —
+ * the server loads them via import(). But if a CJS package internally tries
+ * to require() an ESM-only transitive dep, that's a real conflict this test
+ * catches (e.g. react-syntax-highlighter v15→v16 broke because refractor v5
+ * became ESM-only).
+ */
+import * as fs from 'fs';
+import * as path from 'path';
+const webserverPkg = JSON.parse(fs.readFileSync(path.join(__dirname, '..', 'package.json'), 'utf8'));
+const deps = Object.keys(webserverPkg.dependencies || {}).filter((dep) => !dep.startsWith('@types/'));
+/**
+ * Check if a package declares "type": "module" in its package.json.
+ * These packages are ESM-only and expected to fail require().
+ */
+function isPackageEsmOnly(dep) {
+    let resolved;
+    try {
+        resolved = require.resolve(dep);
+    }
+    catch {
+        // Can't even resolve → likely ESM-only without a CJS entry
+        return true;
+    }
+    try {
+        // Walk up from the resolved entry point to find the package's package.json
+        let dir = path.dirname(resolved);
+        for (let i = 0; i < 5; i++) {
+            const pkgPath = path.join(dir, 'package.json');
+            if (fs.existsSync(pkgPath)) {
+                const pkg = JSON.parse(fs.readFileSync(pkgPath, 'utf8'));
+                return pkg.type === 'module';
+            }
+            dir = path.dirname(dir);
+        }
+    }
+    catch { }
+    return false;
+}
+describe('server dependency smoke tests', () => {
+    it.each(deps)('%s loads without CJS/ESM conflicts', (dep) => {
+        try {
+            require(dep);
+        }
+        catch (e) {
+            // If the package itself is ESM-only ("type": "module"), require() is
+            // expected to fail. The server loads these via import() and they work fine.
+            if (isPackageEsmOnly(dep)) {
+                return;
+            }
+            // For CJS packages, ANY error is a real problem — including internal
+            // CJS→ESM conflicts where a CJS dep tries to require() an ESM-only
+            // transitive dependency (exactly the react-syntax-highlighter v16 bug).
+            throw e;
+        }
+    });
+    // Sub-path imports that the server actually uses at runtime
+    it('react-syntax-highlighter CJS prism styles load', () => {
+        expect(() => require('react-syntax-highlighter/dist/cjs/styles/prism')).not.toThrow();
+    });
+});
+//# sourceMappingURL=dependency-smoke.test.js.map

package/codeyam-cli/src/webserver/__tests__/dependency-smoke.test.js.map

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