@codeyam/codeyam-cli 0.1.0-staging.e38f7bd → 0.1.0-staging.fef152f

package/codeyam-cli/src/utils/__tests__/setupClaudeCodeSettings.test.js

@@ -6,6 +6,28 @@ jest.mock('fs');
 jest.mock('path');
 const mockFs = fs;
 const mockPath = path;
+// Shared permission lists for assertions
+const memoryPermissions = [
+    'Skill(codeyam-memory)',
+    'Skill(codeyam-new-rule)',
+    'Bash(codeyam)',
+    'Bash(codeyam:*)',
+    'Read(.codeyam/**)',
+    'Edit(.codeyam/**)',
+    'Write(.codeyam/**)',
+    'Glob(.codeyam/**)',
+];
+const simulationPermissions = [
+    'Skill(codeyam-setup)',
+    'Skill(codeyam-sim)',
+    'Skill(codeyam-debug)',
+    'Skill(codeyam-test)',
+    'Skill(codeyam-verify)',
+    'Read(/tmp/codeyam/**)',
+    'Edit(/tmp/codeyam/**)',
+    'Write(/tmp/codeyam/**)',
+    'Glob(/tmp/codeyam/**)',
+];
 describe('setupClaudeCodeSettings', () => {
     const projectRoot = '/Users/testuser/myproject';
     const claudeDir = '/Users/testuser/myproject/.claude';
@@ -23,10 +45,8 @@ describe('setupClaudeCodeSettings', () => {
     describe('directory and file creation', () => {
         test('creates .claude directory if it does not exist', () => {
             mockFs.existsSync.mockImplementation((p) => {
-                // .claude directory doesn't exist
                 if (p === claudeDir)
                     return false;
-                // settings.local.json doesn't exist either
                 if (p === settingsPath)
                     return false;
                 return false;
@@ -39,12 +59,10 @@ describe('setupClaudeCodeSettings', () => {
             });
             expect(result).toBe(true);
         });
-        test('creates new settings file with all CodeYam permissions', () => {
+        test('creates new settings file with only memory permissions by default', () => {
             mockFs.existsSync.mockImplementation((p) => {
-                // .claude directory exists
                 if (p === claudeDir)
                     return true;
-                // settings.local.json doesn't exist yet
                 if (p === settingsPath)
                     return false;
                 return false;
@@ -52,90 +70,73 @@ describe('setupClaudeCodeSettings', () => {
             mockFs.writeFileSync.mockImplementation(() => undefined);
             const result = setupClaudeCodeSettings(projectRoot);
             expect(mockFs.writeFileSync).toHaveBeenCalledWith(settingsPath, expect.any(String), 'utf8');
-            // Parse the written content to verify structure
             const writtenContent = mockFs.writeFileSync.mock
                 .calls[0][1];
             const settings = JSON.parse(writtenContent);
-            expect(settings.permissions.allow).toContain('Skill(codeyam-setup)');
-            expect(settings.permissions.allow).toContain('Bash(codeyam)');
-            expect(settings.permissions.allow).toContain('Read(.codeyam/**)');
+            // Should include memory permissions
+            for (const perm of memoryPermissions) {
+                expect(settings.permissions.allow).toContain(perm);
+            }
+            // Should NOT include simulation permissions
+            for (const perm of simulationPermissions) {
+                expect(settings.permissions.allow).not.toContain(perm);
+            }
             expect(result).toBe(true);
         });
     });
-    describe('adding permissions to existing settings', () => {
-        test('adds CodeYam permissions to existing settings without allow list', () => {
+    describe('memory mode (default)', () => {
+        test('adds only memory permissions when mode is memory', () => {
             mockFs.existsSync.mockReturnValue(true);
             mockFs.readFileSync.mockReturnValue(JSON.stringify({ otherSetting: 'value' }));
             let writtenSettings;
             mockFs.writeFileSync.mockImplementation((_path, content) => {
                 writtenSettings = JSON.parse(content);
             });
-            const result = setupClaudeCodeSettings(projectRoot);
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-setup)');
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-sim)');
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-debug)');
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-test)');
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-verify)');
-            expect(writtenSettings.permissions.allow).toContain('Bash(codeyam:*)');
+            const result = setupClaudeCodeSettings(projectRoot, { mode: 'memory' });
+            for (const perm of memoryPermissions) {
+                expect(writtenSettings.permissions.allow).toContain(perm);
+            }
+            for (const perm of simulationPermissions) {
+                expect(writtenSettings.permissions.allow).not.toContain(perm);
+            }
             expect(writtenSettings.otherSetting).toBe('value');
             expect(result).toBe(true);
         });
-        test('adds CodeYam permissions to existing allow list', () => {
+        test('default mode (no options) behaves as memory mode', () => {
             mockFs.existsSync.mockReturnValue(true);
-            mockFs.readFileSync.mockReturnValue(JSON.stringify({
-                permissions: {
-                    allow: ['some-other-tool'],
-                },
-            }));
+            mockFs.readFileSync.mockReturnValue(JSON.stringify({}));
             let writtenSettings;
             mockFs.writeFileSync.mockImplementation((_path, content) => {
                 writtenSettings = JSON.parse(content);
             });
-            const result = setupClaudeCodeSettings(projectRoot);
-            expect(writtenSettings.permissions.allow).toContain('some-other-tool');
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-setup)');
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-sim)');
-            expect(writtenSettings.permissions.allow).toContain('Write(.codeyam/**)');
-            expect(result).toBe(true);
+            setupClaudeCodeSettings(projectRoot);
+            for (const perm of memoryPermissions) {
+                expect(writtenSettings.permissions.allow).toContain(perm);
+            }
+            for (const perm of simulationPermissions) {
+                expect(writtenSettings.permissions.allow).not.toContain(perm);
+            }
         });
-        test('does not duplicate CodeYam permissions if already present', () => {
+        test('does not duplicate memory permissions if already present', () => {
             mockFs.existsSync.mockReturnValue(true);
             mockFs.readFileSync.mockReturnValue(JSON.stringify({
                 permissions: {
-                    allow: [
-                        'Skill(codeyam-setup)',
-                        'Skill(codeyam-sim)',
-                        'Skill(codeyam-debug)',
-                        'Skill(codeyam-test)',
-                        'Skill(codeyam-verify)',
-                        'Bash(codeyam)',
-                        'Bash(codeyam:*)',
-                        'Read(.codeyam/**)',
-                        'Edit(.codeyam/**)',
-                        'Write(.codeyam/**)',
-                        'Glob(.codeyam/**)',
-                        'Read(/tmp/codeyam/**)',
-                        'Edit(/tmp/codeyam/**)',
-                        'Write(/tmp/codeyam/**)',
-                        'Glob(/tmp/codeyam/**)',
-                        'other-tool',
-                    ],
+                    allow: [...memoryPermissions, 'other-tool'],
                 },
             }));
             const result = setupClaudeCodeSettings(projectRoot);
-            // Should not write if all permissions are already present
+            // Should not write if all memory permissions are already present
             expect(mockFs.writeFileSync).not.toHaveBeenCalled();
             expect(result).toBe(true);
         });
-        test('adds only missing CodeYam permissions', () => {
+        test('adds only missing memory permissions', () => {
             mockFs.existsSync.mockReturnValue(true);
             mockFs.readFileSync.mockReturnValue(JSON.stringify({
                 permissions: {
                     allow: [
-                        'Skill(codeyam-setup)',
-                        'Skill(codeyam-sim)',
+                        'Skill(codeyam-memory)',
                         'other-tool',
-                        // Missing: Skill(codeyam-debug), Skill(codeyam-test), Skill(codeyam-verify), all Bash and file ops
+                        // Missing: Skill(codeyam-new-rule), Bash, file ops
                     ],
                 },
             }));
@@ -144,20 +145,71 @@ describe('setupClaudeCodeSettings', () => {
                 writtenSettings = JSON.parse(content);
             });
             const result = setupClaudeCodeSettings(projectRoot);
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-setup)');
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-sim)');
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-debug)');
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-test)');
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-verify)');
-            expect(writtenSettings.permissions.allow).toContain('Bash(codeyam)');
+            for (const perm of memoryPermissions) {
+                expect(writtenSettings.permissions.allow).toContain(perm);
+            }
             expect(writtenSettings.permissions.allow).toContain('other-tool');
             // Should not duplicate existing ones
-            const setupCount = writtenSettings.permissions.allow.filter((p) => p === 'Skill(codeyam-setup)').length;
-            expect(setupCount).toBe(1);
+            const memoryCount = writtenSettings.permissions.allow.filter((p) => p === 'Skill(codeyam-memory)').length;
+            expect(memoryCount).toBe(1);
+            expect(result).toBe(true);
+        });
+    });
+    describe('full mode', () => {
+        test('adds all permissions (memory + simulation) in full mode', () => {
+            mockFs.existsSync.mockReturnValue(true);
+            mockFs.readFileSync.mockReturnValue(JSON.stringify({ otherSetting: 'value' }));
+            let writtenSettings;
+            mockFs.writeFileSync.mockImplementation((_path, content) => {
+                writtenSettings = JSON.parse(content);
+            });
+            const result = setupClaudeCodeSettings(projectRoot, { mode: 'full' });
+            for (const perm of memoryPermissions) {
+                expect(writtenSettings.permissions.allow).toContain(perm);
+            }
+            for (const perm of simulationPermissions) {
+                expect(writtenSettings.permissions.allow).toContain(perm);
+            }
+            expect(writtenSettings.otherSetting).toBe('value');
+            expect(result).toBe(true);
+        });
+        test('does not duplicate full permissions if already present', () => {
+            const allPermissions = [...memoryPermissions, ...simulationPermissions];
+            mockFs.existsSync.mockReturnValue(true);
+            mockFs.readFileSync.mockReturnValue(JSON.stringify({
+                permissions: {
+                    allow: [...allPermissions, 'other-tool'],
+                },
+            }));
+            const result = setupClaudeCodeSettings(projectRoot, { mode: 'full' });
+            expect(mockFs.writeFileSync).not.toHaveBeenCalled();
+            expect(result).toBe(true);
+        });
+        test('adds simulation permissions to existing memory-only settings', () => {
+            mockFs.existsSync.mockReturnValue(true);
+            mockFs.readFileSync.mockReturnValue(JSON.stringify({
+                permissions: {
+                    allow: [...memoryPermissions, 'other-tool'],
+                },
+            }));
+            let writtenSettings;
+            mockFs.writeFileSync.mockImplementation((_path, content) => {
+                writtenSettings = JSON.parse(content);
+            });
+            const result = setupClaudeCodeSettings(projectRoot, { mode: 'full' });
+            for (const perm of memoryPermissions) {
+                expect(writtenSettings.permissions.allow).toContain(perm);
+            }
+            for (const perm of simulationPermissions) {
+                expect(writtenSettings.permissions.allow).toContain(perm);
+            }
+            expect(writtenSettings.permissions.allow).toContain('other-tool');
+            // No duplicates
+            const memoryCount = writtenSettings.permissions.allow.filter((p) => p === 'Skill(codeyam-memory)').length;
+            expect(memoryCount).toBe(1);
             expect(result).toBe(true);
         });
     });
-    // Note: Stop hook configuration tests removed - hook functionality is currently disabled
     describe('error handling', () => {
         test('handles malformed JSON gracefully and creates new settings', () => {
             mockFs.existsSync.mockReturnValue(true);
@@ -190,31 +242,25 @@ describe('setupClaudeCodeSettings', () => {
         });
     });
     describe('idempotency', () => {
-        test('returns true when settings are already fully configured', () => {
+        test('returns true without writing when memory settings are fully configured', () => {
             mockFs.existsSync.mockReturnValue(true);
             mockFs.readFileSync.mockReturnValue(JSON.stringify({
                 permissions: {
-                    allow: [
-                        'Skill(codeyam-setup)',
-                        'Skill(codeyam-sim)',
-                        'Skill(codeyam-debug)',
-                        'Skill(codeyam-test)',
-                        'Skill(codeyam-verify)',
-                        'Bash(codeyam)',
-                        'Bash(codeyam:*)',
-                        'Read(.codeyam/**)',
-                        'Edit(.codeyam/**)',
-                        'Write(.codeyam/**)',
-                        'Glob(.codeyam/**)',
-                        'Read(/tmp/codeyam/**)',
-                        'Edit(/tmp/codeyam/**)',
-                        'Write(/tmp/codeyam/**)',
-                        'Glob(/tmp/codeyam/**)',
-                    ],
+                    allow: [...memoryPermissions],
                 },
             }));
             const result = setupClaudeCodeSettings(projectRoot);
-            // Should not write if already configured
+            expect(mockFs.writeFileSync).not.toHaveBeenCalled();
+            expect(result).toBe(true);
+        });
+        test('returns true without writing when full settings are fully configured', () => {
+            mockFs.existsSync.mockReturnValue(true);
+            mockFs.readFileSync.mockReturnValue(JSON.stringify({
+                permissions: {
+                    allow: [...memoryPermissions, ...simulationPermissions],
+                },
+            }));
+            const result = setupClaudeCodeSettings(projectRoot, { mode: 'full' });
             expect(mockFs.writeFileSync).not.toHaveBeenCalled();
             expect(result).toBe(true);
         });

package/codeyam-cli/src/utils/__tests__/setupClaudeCodeSettings.test.js.map

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package/codeyam-cli/src/utils/analysisRunner.js

@@ -3,7 +3,6 @@ import * as path from 'path';
 import { ProgressReporter, withoutSpinner } from "./progress.js";
 import { createFakeCommit, requireBranchAndProject, testEnvironment, } from "./database.js";
 import { startBackgroundServer } from "./backgroundServer.js";
-import { isServerRunning } from "./serverState.js";
 import { updateCommitMetadata } from "../../../packages/database/index.js";
 import { getCurrentEntities } from "../webserver/app/lib/database.js";
 import { pushNewCommitRun } from "../../../packages/utils/server.js";
@@ -49,27 +48,25 @@ export async function runAnalysisForEntities(options) {
     reporter.start('Loading project from database...');
     const { project, branch } = await requireBranchAndProject(projectSlug);
     reporter.succeed('Loaded project and branch');
-    // Start web server if not already running
+    // Start web server if not already running (also handles version mismatch detection)
     reporter.start('Starting web server...');
-    const { running, state } = isServerRunning();
-    let serverUrl;
-    if (running && state) {
-        serverUrl = state.url;
+    const { url: serverUrl, wasAlreadyRunning } = await startBackgroundServer({
+        port: 3111,
+        rootPath: projectRoot,
+        project,
+        branch,
+    });
+    if (wasAlreadyRunning) {
         reporter.succeed(`Web server already running at ${serverUrl}`);
     }
     else {
-        const { url } = await startBackgroundServer({
-            port: 3111,
-            rootPath: projectRoot,
-            project,
-            branch,
-        });
-        serverUrl = url;
         reporter.succeed(`Web server started at ${serverUrl}`);
     }
-    // Resolve entity SHAs if entity names are provided
+    // Look up entities in the specified file paths
+    // This ensures entityShas is populated for Historic Activity tracking
     let entityShas = [];
     if (entityNames && entityNames.length > 0) {
+        // Specific entity names provided - look up by name
         reporter.start(`Looking up ${entityNames.length} entities...`);
         const entities = await getCurrentEntities({
             projectId: project.id,
@@ -83,6 +80,23 @@ export async function runAnalysisForEntities(options) {
         entityShas = entities.map((e) => e.sha);
         reporter.succeed(`Found ${entities.length} entities`);
     }
+    else {
+        // No specific entity names - look up all entities in the file paths
+        reporter.start(`Looking up entities in ${filePaths.length} files...`);
+        const entities = await getCurrentEntities({
+            projectId: project.id,
+            filePaths,
+        });
+        if (entities.length > 0) {
+            entityShas = entities.map((e) => e.sha);
+            reporter.succeed(`Found ${entities.length} entities in files`);
+        }
+        else {
+            // No existing entities found - this is fine for new files
+            // The analyzer will discover and create entities
+            reporter.succeed(`No existing entities found (will be discovered)`);
+        }
+    }
     // Create fake commit for analysis
     reporter.start('Creating analysis commit...');
     const fakeCommit = await createFakeCommit(project, branch, filePaths);
@@ -98,7 +112,7 @@ export async function runAnalysisForEntities(options) {
             capturesCompleted: 0,
             createdAt: new Date().toISOString(),
         },
-        updateCallback: (metadata, commit) => {
+        updateCallback: (metadata) => {
             const existingRun = metadata.currentRun;
             if (existingRun && existingRun.id && existingRun.archivedAt) {
                 return;

package/codeyam-cli/src/utils/analysisRunner.js.map

@@ -1 +1 @@
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package/codeyam-cli/src/utils/analyzer.js

@@ -54,6 +54,13 @@ export function getAnalyzerPath(projectSlug) {
 export function getProjectPath(projectSlug) {
     return getSandboxProjectPath(projectSlug);
 }
+/**
+ * Check if the analyzer template has been finalized (npm install + playwright + build)
+ */
+export function isAnalyzerFinalized() {
+    const templatePath = getAnalyzerTemplatePath();
+    return fsSync.existsSync(path.join(templatePath, '.finalized'));
+}
 /**
  * Check if analyzer exists for a project
  */

package/codeyam-cli/src/utils/analyzer.js.map

@@ -1 +1 @@
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