@codeyam/codeyam-cli 0.1.0-staging.b8a55ba → 0.1.0-staging.b8f4f94

package/packages/analyze/src/lib/files/analyze/analyzeEntities/prepareDataStructures.js

@@ -1,6 +1,8 @@
 import { awsLog, awsLogDebugLevel } from "../../../../../../../packages/utils/index.js";
 import measureAndReportExecutionTime from "../../../utils/measureAndReportExecutionTime.js";
-import { fillInDirectSchemaGapsAndUnknowns, generateEntityDataStructure, deduplicateFunctionSchemas, getEquivalentSignatureVariables, getFunctionSignature, getReturnValue, getSourceEquivalencies, getUsageEquivalencies, getConditionalUsages, detectWrapperRequirements, } from "../../../../../../../packages/ai/index.js";
+import { deduplicateFunctionSchemas, detectWrapperRequirements, fillInDirectSchemaGapsAndUnknowns, generateEntityDataStructure, getConditionalUsages, getEquivalentSignatureVariables, getFunctionSignature, getReturnValue, getSourceEquivalencies, getUsageEquivalencies, getConditionalEffects, getCompoundConditionals, getChildBoundaryGatingConditions, getJsxRenderingUsages, skipWorkerPool, } from "../../../../../../../packages/ai/index.js";
+// Set to true to process entities one at a time for easier debugging.
+const DEBUG_SEQUENTIAL_EXECUTION = false;
 // VERSION MARKER: server-only-detection-v2 (2025-12-28)
 // This version includes automatic detection of "use server" and "server-only" files
 // and runs server-only detection even for cached entities
@@ -10,8 +12,7 @@ import { fillInDirectSchemaGapsAndUnknowns, generateEntityDataStructure, dedupli
  * This ensures that data structure generation failures don't corrupt the traversal state.
  */
 export default async function prepareEntityDataStructures(allEntities, projectAnalyzer, options) {
-    // Process entities in parallel for speed
-    await Promise.all(Array.from(allEntities).map(async (entity) => {
+    const processEntity = async (entity) => {
         // Check if already has cached data structure (unless force is set)
         const hasCache = !!entity.metadata?.isolatedDataStructure;
         const shouldRegenerateDataStructure = !hasCache || options.force || options.forceAll;
@@ -42,7 +43,7 @@ export default async function prepareEntityDataStructures(allEntities, projectAn
                         // Still continue to PHASE 2 for server-only detection
                     }
                     else {
-                        const { isolatedDataStructure, functionCalls, callVariableNames, } = dataStructureInfo;
+                        const { isolatedDataStructure, functionCalls, callVariableNames } = dataStructureInfo;
                         // Store data structure in entity metadata
                         entity.metadata || (entity.metadata = {});
                         // Deep clone dependencySchemas to avoid shared references
@@ -51,8 +52,7 @@ export default async function prepareEntityDataStructures(allEntities, projectAn
                         const clonedDependencySchemas = {};
                         for (const filePath in isolatedDataStructure.dependencySchemas) {
                             clonedDependencySchemas[filePath] = {};
-                            for (const entityName in isolatedDataStructure
-                                .dependencySchemas[filePath]) {
+                            for (const entityName in isolatedDataStructure.dependencySchemas[filePath]) {
                                 const depSchema = isolatedDataStructure.dependencySchemas[filePath][entityName];
                                 clonedDependencySchemas[filePath][entityName] = {
                                     signatureSchema: { ...depSchema.signatureSchema },
@@ -62,6 +62,13 @@ export default async function prepareEntityDataStructures(allEntities, projectAn
                                 };
                             }
                         }
+                        // LOGGING: Track dependencySchemas entity names for debugging :: format issues
+                        const allEntityNames = [];
+                        for (const filePath in clonedDependencySchemas) {
+                            for (const entityName in clonedDependencySchemas[filePath]) {
+                                allEntityNames.push(`${filePath}:${entityName}`);
+                            }
+                        }
                         entity.metadata.isolatedDataStructure = {
                             signatureSchema: deduplicateFunctionSchemas(isolatedDataStructure.signatureSchema),
                             returnValueSchema: deduplicateFunctionSchemas(isolatedDataStructure.returnValueSchema),
@@ -70,9 +77,17 @@ export default async function prepareEntityDataStructures(allEntities, projectAn
                             environmentVariables: isolatedDataStructure.environmentVariables,
                             // Use enriched conditional usages with source tracing from analysis
                             conditionalUsages: isolatedDataStructure.conditionalUsages,
+                            // Include conditional effects for execution flow generation
+                            conditionalEffects: isolatedDataStructure.conditionalEffects,
+                            // Include compound conditionals for complete execution flow generation
+                            compoundConditionals: isolatedDataStructure.compoundConditionals,
                             // Include root entity's equivalencies for merge step
                             usageEquivalencies: isolatedDataStructure.usageEquivalencies,
                             sourceEquivalencies: isolatedDataStructure.sourceEquivalencies,
+                            // Include child boundary gating conditions for child component flow merging
+                            childBoundaryGatingConditions: isolatedDataStructure.childBoundaryGatingConditions,
+                            // Include JSX rendering usages for array size and text length flow generation
+                            jsxRenderingUsages: isolatedDataStructure.jsxRenderingUsages,
                         };
                         // Detect wrapper requirements (Context providers, etc.)
                         const wrapperRequirements = detectWrapperRequirements({
@@ -126,12 +141,10 @@ export default async function prepareEntityDataStructures(allEntities, projectAn
                 // But re-check if isMocked is null or undefined - this handles previously cached entities
                 if (importedExport.isMocked === true ||
                     importedExport.isMocked === false) {
-                    console.log(`CodeYam: [${entity.name}] SKIP ${importedExport.name} - already has isMocked=${importedExport.isMocked}`);
                     continue;
                 }
                 // Never mock visual components - they render UI and should use real implementation
                 if (importedExport.entityType === 'visual') {
-                    console.log(`CodeYam: [${entity.name}] SKIP ${importedExport.name} - visual component, setting isMocked=false`);
                     importedExport.isMocked = false;
                     continue;
                 }
@@ -144,24 +157,13 @@ export default async function prepareEntityDataStructures(allEntities, projectAn
                 const isServerOnly = importedFileContent
                     ? isServerOnlyFile(importedFileContent)
                     : false;
-                console.log(`CodeYam: [${entity.name}] CHECK ${importedExport.name} from ${importedFilePath}:`, {
-                    hasFileAnalyzer: !!importedFileAnalyzer,
-                    hasSourceFile: !!importedFileAnalyzer?.sourceFile,
-                    hasFileContent: !!importedFileContent,
-                    contentFirst50Chars: importedFileContent
-                        ?.substring(0, 50)
-                        ?.replace(/\n/g, '\\n'),
-                    isServerOnly,
-                });
                 if (importedFileContent && isServerOnly) {
-                    console.log(`CodeYam: [${entity.name}] ✓ MARKING ${importedExport.name} as isMocked=true (server-only file detected)`);
                     importedExport.isMocked = true;
                     continue;
                 }
                 const matchesMockedDep = mockedDependencies.some((dep) => dep.filePath === importedExport.filePath &&
                     dep.entityName === importedExport.name);
                 importedExport.isMocked = matchesMockedDep;
-                console.log(`CodeYam: [${entity.name}] ${importedExport.name} isMocked=${matchesMockedDep} (from mockedDependencies)`);
             }
             // Browser globals that should always be mocked (they make network calls)
             const alwaysMockedBrowserGlobals = ['fetch', 'EventSource'];
@@ -188,7 +190,29 @@ export default async function prepareEntityDataStructures(allEntities, projectAn
             console.warn(`CodeYam: prepareEntityDataStructures: Error preparing ${entity.filePath}:${entity.name}:`, error);
             // Continue with other entities - this one will have empty schemas
         }
-    }));
+    };
+    const entities = Array.from(allEntities);
+    // The worker thread creates its own ProjectAnalyzer (ts.Program) on first use,
+    // which takes 50-70s. For small entity counts the overhead far exceeds the actual
+    // processing time (<2s). Skip the worker and run on the main thread instead,
+    // reusing the existing ProjectAnalyzer.
+    const entitiesNeedingGeneration = entities.filter((e) => !e.metadata?.isolatedDataStructure || options.force || options.forceAll).length;
+    const WORKER_ENTITY_THRESHOLD = 500;
+    if (entitiesNeedingGeneration < WORKER_ENTITY_THRESHOLD) {
+        console.log(`CodeYam: Skipping worker thread for DS prep (${entitiesNeedingGeneration} entities < ${WORKER_ENTITY_THRESHOLD} threshold)`);
+        skipWorkerPool();
+    }
+    const sequential = DEBUG_SEQUENTIAL_EXECUTION || options.sequentialDataStructurePrep;
+    if (sequential) {
+        // Sequential execution for debugging - process one entity at a time
+        for (const entity of entities) {
+            await processEntity(entity);
+        }
+    }
+    else {
+        // Parallel execution for speed
+        await Promise.all(entities.map(processEntity));
+    }
 }
 /**
  * Helper: Generate data structure and extract function call information for an entity
@@ -218,17 +242,26 @@ async function getEntityDataStructureAndFunctionCalls({ entity, fileAnalyzer, })
         const signatureSchema = getFunctionSignature(dataStructure, {
             functionName: importedExport.name,
         });
-        // If no signature found, this function doesn't exist in the analysis
-        if (!signatureSchema) {
-            return acc;
-        }
         const returnValueSchema = getReturnValue(dataStructure, {
             functionName: importedExport.name,
         });
+        // If neither signature nor return value found, check if this function has matching
+        // external function calls. External functions (like useLoaderData from react-router)
+        // don't have entries in functionResults, so getReturnValue returns null for them.
+        // But their return values ARE traced in externalFunctionCalls via perVariableSchemas.
+        // We need to check for matching calls before skipping.
+        if (!signatureSchema && !returnValueSchema) {
+            const hasMatchingExternalCall = dataStructure.externalFunctionCalls?.some((fc) => fc.name === importedExport.name ||
+                fc.name.startsWith(importedExport.name + '<'));
+            // Only skip if there are no matching external function calls
+            if (!hasMatchingExternalCall) {
+                return acc;
+            }
+        }
         // Clone schemas before deduplication to avoid mutating shared references
         // getReturnValue() and getFunctionSignature() return direct references, so we need
         // to clone them before passing to deduplicateFunctionSchemas (which may mutate)
-        const clonedSignatureSchema = { ...signatureSchema };
+        const clonedSignatureSchema = { ...(signatureSchema ?? {}) };
         const clonedReturnValueSchema = { ...(returnValueSchema ?? {}) };
         acc[_a = importedExport.filePath] || (acc[_a] = {});
         acc[importedExport.filePath][importedExport.name] = {
@@ -245,27 +278,82 @@ async function getEntityDataStructureAndFunctionCalls({ entity, fileAnalyzer, })
         // to iterate over ALL matching calls (not just the first one).
         const matchingCalls = dataStructure.externalFunctionCalls.filter((fc) => fc.name === importedExport.name ||
             fc.name.startsWith(importedExport.name + '<'));
-        // Track how many times each variable name has been seen across ALL matching calls
-        // This handles the case where multiple parameterized calls (e.g., useFetcher<ConfigData>,
-        // useFetcher<SettingsData>) assign to the same variable name
-        const varNameCounts = {};
         for (const efc of matchingCalls) {
-            // Check if this call has perVariableSchemas (multiple calls with same signature)
+            // Check if this call has perVariableSchemas (multiple calls with variable tracking)
             if (efc?.perVariableSchemas) {
-                for (const [varName, perVarSchema] of Object.entries(efc.perVariableSchemas)) {
-                    // Track occurrences of this variable name
-                    const occurrence = varNameCounts[varName] ?? 0;
-                    varNameCounts[varName] = occurrence + 1;
-                    // Use indexed key if variable name is reused (e.g., fetcher, fetcher[1])
-                    const indexedVarName = occurrence === 0 ? varName : `${varName}[${occurrence}]`;
-                    const qualifiedKey = `${importedExport.name}::${indexedVarName}`;
-                    acc[importedExport.filePath][qualifiedKey] = {
+                // Check if perVariableSchemas has indexed keys (e.g., "fetcher[1]") which indicates
+                // variable reuse with DIFFERENT call signatures (e.g., let fetcher = useFetcher<A>(); fetcher = useFetcher<B>();)
+                // In this case, we need to create SEPARATE entries for each call signature.
+                const perVarKeys = Object.keys(efc.perVariableSchemas);
+                const hasIndexedKeys = perVarKeys.some((key) => /\[\d+\]$/.test(key));
+                if (hasIndexedKeys &&
+                    efc.callSignatureToVariable &&
+                    efc.allCallSignatures) {
+                    // Variable reuse case: create separate entries for each call signature
+                    // Map from call signature to its variable key in perVariableSchemas
+                    // e.g., useFetcher<ConfigData>() -> 'fetcher', useFetcher<SettingsData>() -> 'fetcher[1]'
+                    const varNameCounts = {};
+                    for (const callSig of efc.allCallSignatures) {
+                        const varName = efc.callSignatureToVariable[callSig];
+                        if (!varName)
+                            continue;
+                        // Track occurrence count for this variable name
+                        const occurrence = varNameCounts[varName] ?? 0;
+                        varNameCounts[varName] = occurrence + 1;
+                        // Get the key in perVariableSchemas (indexed if reused)
+                        const perVarKey = occurrence === 0 ? varName : `${varName}[${occurrence}]`;
+                        const varSchema = efc.perVariableSchemas[perVarKey];
+                        if (varSchema && Object.keys(varSchema).length > 0) {
+                            // Create entry with this call signature as the key
+                            const rewrittenSchema = {};
+                            rewrittenSchema[`${callSig}.functionCallReturnValue`] =
+                                'object';
+                            for (const [path, type] of Object.entries(varSchema)) {
+                                const rewrittenPath = path.startsWith(callSig)
+                                    ? path
+                                    : `${callSig}.${path}`;
+                                rewrittenSchema[rewrittenPath] = type;
+                            }
+                            acc[importedExport.filePath][callSig] = {
+                                signatureSchema: deduplicateFunctionSchemas({
+                                    ...signatureSchema,
+                                }),
+                                returnValueSchema: deduplicateFunctionSchemas(rewrittenSchema),
+                                usageEquivalencies: getUsageEquivalencies(dataStructure, importedExport.name) ??
+                                    {},
+                                sourceEquivalencies: getSourceEquivalencies(dataStructure, importedExport.name) ?? {},
+                            };
+                        }
+                    }
+                }
+                else {
+                    // Destructuring case: const { a, b, c } = useLoaderData()
+                    // Merge all variable schemas into a single entry with the call signature as key
+                    const callSignatureKey = efc.callSignature;
+                    // Merge all variable schemas by prepending the call signature to each path.
+                    // perVariableSchemas paths are like "functionCallReturnValue.entities.sha"
+                    // We need to prefix them with the call signature to get:
+                    // "useLoaderData<typeof loader>().functionCallReturnValue.entities.sha"
+                    const mergedReturnValueSchema = {};
+                    // Set the top-level return value as object since it contains named properties
+                    mergedReturnValueSchema[`${callSignatureKey}.functionCallReturnValue`] = 'object';
+                    for (const [varName, perVarSchema] of Object.entries(efc.perVariableSchemas)) {
+                        for (const [path, type] of Object.entries(perVarSchema)) {
+                            // Only prepend the call signature if the path doesn't already have it.
+                            // perVariableSchemas paths may already include the call signature prefix
+                            // (e.g., "useCustomSizes(projectSlug).functionCallReturnValue.customSizes")
+                            // depending on how they were built. If so, use the path as-is.
+                            const rewrittenPath = path.startsWith(callSignatureKey)
+                                ? path
+                                : `${callSignatureKey}.${path}`;
+                            mergedReturnValueSchema[rewrittenPath] = type;
+                        }
+                    }
+                    acc[importedExport.filePath][callSignatureKey] = {
                         signatureSchema: deduplicateFunctionSchemas({
                             ...signatureSchema,
                         }),
-                        returnValueSchema: deduplicateFunctionSchemas({
-                            ...perVarSchema,
-                        }),
+                        returnValueSchema: deduplicateFunctionSchemas(mergedReturnValueSchema),
                         usageEquivalencies: getUsageEquivalencies(dataStructure, importedExport.name) ?? {},
                         sourceEquivalencies: getSourceEquivalencies(dataStructure, importedExport.name) ??
                             {},
@@ -274,15 +362,10 @@ async function getEntityDataStructureAndFunctionCalls({ entity, fileAnalyzer, })
             }
             else if (efc?.receivingVariableNames?.length === 1) {
                 // For parameterized calls like useFetcher<UserData>(), each is a separate entry
-                // with a single receivingVariableName. Create a variable-qualified entry using
-                // the specific return value for this parameterized call.
+                // with a single receivingVariableName. Use the call signature as the key.
                 const varName = efc.receivingVariableNames[0];
-                // Track occurrences of this variable name across all efc entries
-                const occurrence = varNameCounts[varName] ?? 0;
-                varNameCounts[varName] = occurrence + 1;
-                // Use indexed key if variable name is reused (e.g., fetcher, fetcher[1])
-                const indexedVarName = occurrence === 0 ? varName : `${varName}[${occurrence}]`;
-                const qualifiedKey = `${importedExport.name}::${indexedVarName}`;
+                // Use the call signature as the key (e.g., "useFetcher<UserData>()")
+                const callSignatureKey = efc.callSignature;
                 // PREFER perVariableSchemas over getReturnValue() when available
                 // perVariableSchemas has the SPECIFIC schema for this parameterized call,
                 // while getReturnValue() may return merged schemas from multiple calls
@@ -299,7 +382,7 @@ async function getEntityDataStructureAndFunctionCalls({ entity, fileAnalyzer, })
                 }
                 if (parameterizedReturnValue &&
                     Object.keys(parameterizedReturnValue).length > 0) {
-                    acc[importedExport.filePath][qualifiedKey] = {
+                    acc[importedExport.filePath][callSignatureKey] = {
                         signatureSchema: deduplicateFunctionSchemas({
                             ...signatureSchema,
                         }),
@@ -315,6 +398,36 @@ async function getEntityDataStructureAndFunctionCalls({ entity, fileAnalyzer, })
         }
         return acc;
     }, {});
+    // Add same-file child components to dependencySchemas.
+    // Same-file components (e.g., AgentCard defined in the same file as AgentTranscriptsPage)
+    // appear in externalFunctionCalls and functionResults but NOT in importedExports or
+    // nodeModuleImports. Without this, their signatures are missing from dependencySchemas
+    // and enrichArrayTypesFromChildSignatures can't find child component field accesses.
+    const allDependencyNames = new Set(allDependencies.map((d) => d.name));
+    for (const efc of dataStructure.externalFunctionCalls) {
+        // Skip if already covered by importedExports or nodeModuleImports
+        if (allDependencyNames.has(efc.name))
+            continue;
+        const signatureSchema = getFunctionSignature(dataStructure, {
+            functionName: efc.name,
+        });
+        const returnValueSchema = getReturnValue(dataStructure, {
+            functionName: efc.name,
+        });
+        // Only add if we have signature or return value data
+        if (!signatureSchema && !returnValueSchema)
+            continue;
+        const clonedSignatureSchema = { ...(signatureSchema ?? {}) };
+        const clonedReturnValueSchema = { ...(returnValueSchema ?? {}) };
+        const entityFilePath = entity.filePath;
+        dependencySchemas[entityFilePath] || (dependencySchemas[entityFilePath] = {});
+        dependencySchemas[entityFilePath][efc.name] = {
+            signatureSchema: deduplicateFunctionSchemas(clonedSignatureSchema),
+            returnValueSchema: deduplicateFunctionSchemas(clonedReturnValueSchema),
+            usageEquivalencies: getUsageEquivalencies(dataStructure, efc.name) ?? {},
+            sourceEquivalencies: getSourceEquivalencies(dataStructure, efc.name) ?? {},
+        };
+    }
     const rawReturnValue = getReturnValue(dataStructure, { fillInUnknowns: false }) ?? {};
     // Clone root function schemas before deduplication to avoid mutating shared references
     const rawSignature = getFunctionSignature(dataStructure, { fillInUnknowns: false }) ?? {};
@@ -322,20 +435,42 @@ async function getEntityDataStructureAndFunctionCalls({ entity, fileAnalyzer, })
     const clonedRawReturnValue = { ...rawReturnValue };
     // Get enriched conditional usages with source tracing
     const conditionalUsages = getConditionalUsages(dataStructure);
+    // Get conditional effects (setter calls inside conditionals)
+    const conditionalEffects = getConditionalEffects(dataStructure);
+    // Get compound conditionals (grouped conditions that must all be true)
+    const compoundConditionals = getCompoundConditionals(dataStructure);
     const rawUsageEquivalencies = getUsageEquivalencies(dataStructure);
     const rawSourceEquivalencies = getSourceEquivalencies(dataStructure);
+    // Get child boundary gating conditions for child component flow merging
+    const childBoundaryGatingConditions = getChildBoundaryGatingConditions(dataStructure);
+    // Get JSX rendering usages for array size and text length flow generation
+    const jsxRenderingUsages = getJsxRenderingUsages(dataStructure);
+    const equivalentSignatureVariables = getEquivalentSignatureVariables(dataStructure);
     const isolatedDataStructure = {
         signatureSchema: deduplicateFunctionSchemas(clonedRawSignature),
         returnValueSchema: deduplicateFunctionSchemas(clonedRawReturnValue),
-        equivalentSignatureVariables: getEquivalentSignatureVariables(dataStructure),
+        equivalentSignatureVariables,
         dependencySchemas,
         environmentVariables: dataStructure.environmentVariables,
         conditionalUsages: Object.keys(conditionalUsages).length > 0 ? conditionalUsages : undefined,
+        // Include conditional effects for execution flow generation
+        conditionalEffects: conditionalEffects.length > 0 ? conditionalEffects : undefined,
+        // Include compound conditionals for complete execution flow generation
+        // These capture grouped conditions like (a || b) && !c && !d
+        compoundConditionals: compoundConditionals.length > 0 ? compoundConditionals : undefined,
         // Include root entity's equivalencies so they can be used during merge.
         // These show how the parent's data flows to/from child components.
         // E.g., for SurveysList, usageEquivalencies shows surveys[] → SurveyCard().signature[0].survey
         usageEquivalencies: rawUsageEquivalencies ?? {},
         sourceEquivalencies: rawSourceEquivalencies ?? {},
+        // Include child boundary gating conditions for child component flow merging
+        // Maps child component names to the conditions that must be true for them to render
+        childBoundaryGatingConditions: Object.keys(childBoundaryGatingConditions).length > 0
+            ? childBoundaryGatingConditions
+            : undefined,
+        // Include JSX rendering usages for array size and text length flow generation
+        // These track arrays rendered via .map() and strings interpolated in JSX
+        jsxRenderingUsages: jsxRenderingUsages.length > 0 ? jsxRenderingUsages : undefined,
     };
     const functionCalls = {};
     const callVariableNames = {};
@@ -555,7 +690,17 @@ export function determineMockedDependencies(entity) {
             // A schema with only "EntityName(): function" just indicates the entity is callable,
             // it doesn't mean there's actual return data to mock
             const hasReturnValue = hasActualReturnValueData(entityReturnValueSchema);
-            const complexReturnValue = Object.values(entityReturnValueSchema ?? {}).some((value) => value === 'object' || value === 'array');
+            // Check for complex return types (object/array), accounting for nullable types
+            // e.g., 'object', 'object | null', 'array | undefined' should all count as complex.
+            // Also detect when functionCallReturnValue has nested child properties — this
+            // proves it's a structured type even if its declared type is still 'unknown'.
+            const returnValueKeys = Object.keys(entityReturnValueSchema ?? {});
+            const complexReturnValue = Object.values(entityReturnValueSchema ?? {}).some((value) => {
+                const baseType = value?.split(' | ')[0];
+                return baseType === 'object' || baseType === 'array';
+            }) ||
+                returnValueKeys.some((key) => key.includes('functionCallReturnValue.') ||
+                    key.includes('functionCallReturnValue['));
             // Check if this is a validation function that should always be mocked
             const isValidationFn = isValidationFunction(entityName);
             // Check if entity has chained method calls but no return value
@@ -568,13 +713,25 @@ export function determineMockedDependencies(entity) {
             // If so, we should NOT mock this entity - jsx-components like React Context's
             // Provider/Consumer should use the original, not be mocked
             const onlyHasJsxComponents = allFunctionsAreJsxComponents(entityReturnValueSchema);
+            // Check if returnValueSchema is completely empty (no traced calls at all)
+            // This indicates a side-effect function that we couldn't trace
+            const returnValueSchemaEmpty = Object.keys(entityReturnValueSchema ?? {}).length === 0;
             const entityShouldBeMocked = !onlyHasJsxComponents &&
                 (isValidationFn ||
                     hasChainedCallsWithNoReturn ||
+                    // If entity takes no args AND has return value, it reads from external source
+                    // Examples: useParams(), useAuth(), getConfig()
+                    (emptySignature && hasReturnValue) ||
+                    // If entity takes no args AND returnValueSchema is completely empty,
+                    // it's a side-effect function calling external services
+                    // Examples: logPageView(), initializeAnalytics(), trackEvent()
+                    // NOTE: We don't mock entities that have function markers but no return value
+                    // (like React components: FileProvider() has 'function' type but no return data)
+                    (emptySignature && returnValueSchemaEmpty) ||
                     ((signatureHasFunctions || returnValueHasFunctions) &&
                         hasReturnValue &&
-                        ((emptySignature && hasReturnValue) ||
-                            (!complexSignature && complexReturnValue))));
+                        !complexSignature &&
+                        complexReturnValue));
             if (entityShouldBeMocked) {
                 mockedEntities.push({
                     filePath,

package/packages/analyze/src/lib/files/analyze/analyzeEntities/prepareDataStructures.js.map

@@ -1 +1 @@
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package/packages/analyze/src/lib/files/analyze/analyzeEntities.js

@@ -1,4 +1,6 @@
 import { analyzeEntity, measureAndReportExecutionTime, } from "../../../../../../packages/analyze/index.js";
+import { transformationTracer } from "../scenarios/TransformationTracer.js";
+import { getFileByPathSafe } from "../../utils/getFileByPath.js";
 import trackEntityCircularDependencies from "./trackEntityCircularDependencies.js";
 import validateDependencyAnalyses from "./validateDependencyAnalyses.js";
 import extractClassMethods from "./analyzeEntities/extractClassMethods.js";
@@ -34,6 +36,10 @@ export default async function analyzeEntities({ rootEntities, context, project,
     // This separates the concerns of graph traversal from data structure generation
     awsLogDebugLevel(1, 'Preparing entity data structures...');
     await measureAndReportExecutionTime(() => prepareDataStructures(allEntities, projectAnalyzer, options), 'Data structure preparation');
+    // Signal that analysis can now produce captures
+    // This allows orchestration to start polling for ready analyses
+    awsLogDebugLevel(1, 'Data structures prepared, analysis can now produce captures');
+    options.onAnalysisProducing?.();
     // Persist entities so isolatedDataStructure is available in future runs.
     // This ensures stable dependencyAnalyzedTreeSha across multiple analyzeEntities calls.
     const entitiesWithDataStructure = Array.from(allEntities).filter((e) => e.metadata?.isolatedDataStructure);
@@ -157,6 +163,15 @@ export default async function analyzeEntities({ rootEntities, context, project,
         console.warn(`CodeYam: analyzeEntities: Unexpectedly found ${newlyReady.length} newly ready analyses at the end of entity analysis`);
     }
     awsLog(`CodeYam: analyzeEntities: Analysis completed with ${analyses.length} analyses`);
+    // Flush transformation trace if tracing is enabled
+    // Wrapped in try/catch because trace data can exceed V8's max string length
+    // for large projects, and we must not crash the analysis process over tracing.
+    try {
+        transformationTracer.flush();
+    }
+    catch (e) {
+        console.warn(`CodeYam Warning: Failed to flush transformation trace: ${e.message}`);
+    }
     return analyses;
     // PHASE 3: Pure graph traversal
     // Perform a depth-first traversal of the dependency graph rooted in `entity`,
@@ -215,6 +230,21 @@ export default async function analyzeEntities({ rootEntities, context, project,
                         // Circular dependency detected in path - skip
                         continue;
                     }
+                    // If already visited via another traversal path, check if it's a leaf.
+                    // If it's a leaf, we should still wait for it to complete.
+                    // Only skip if we've already explored it and it's NOT a leaf (meaning it's
+                    // blocked on something else - continuing to traverse would cause a deadlock).
+                    if (visited.has(dependentEntityKey)) {
+                        // If the visited entity is a leaf, we should wait for it to complete
+                        // before processing this entity. Don't skip it!
+                        if (leafKeys.has(dependentEntityKey)) {
+                            // It's a leaf that hasn't completed yet - wait for it
+                            isLeaf = false;
+                            continue;
+                        }
+                        // If it's not a leaf, it's blocked on something else - skip to avoid deadlock
+                        continue;
+                    }
                     isLeaf = false;
                     visitEntity(dependentEntity, [...path, dependentEntityKey]);
                 }
@@ -234,7 +264,7 @@ export default async function analyzeEntities({ rootEntities, context, project,
             existingAnalysis.entity = entity;
             return existingAnalysis;
         }
-        const file = entity.file || project.files.find((f) => f.path === entity.filePath);
+        const file = entity.file || getFileByPathSafe(projectAnalyzer, entity.filePath);
         if (!file) {
             awsLog(`CodeYam: analyzeEntities: File not found for entity: ${entityKey}`);
             return null;