@codeyam/codeyam-cli 0.1.0-staging.7c30edc → 0.1.0-staging.80e493d

package/codeyam-cli/src/webserver/build/server/index.js

@@ -1 +1 @@
-import{Y as H,Z as I,M as J,N as K,W as L,O as _,R as $,T as rr,V as tr,U as or,X as ir,Q as pr}from"./assets/server-build-BQe9Dh4p.js";import"react/jsx-runtime";import"node:stream";import"@react-router/node";import"react-router";import"isbot";import"react-dom/server";import"react";import"lucide-react";import"fetch-retry";import"better-sqlite3";import"pg";import"fs";import"path";import"kysely";import"kysely/helpers/sqlite";import"kysely/helpers/postgres";import"typescript";import"fs/promises";import"os";import"prompts";import"chalk";import"crypto";import"child_process";import"url";import"util";import"dotenv";import"events";import"uuid";import"openai";import"p-queue";import"p-retry";import"@aws-sdk/client-dynamodb";import"lru-cache";import"pluralize";import"piscina";import"json5";import"@aws-sdk/util-dynamodb";import"v8";import"react-syntax-highlighter";import"react-syntax-highlighter/dist/cjs/styles/prism/index.js";import"node:crypto";import"minimatch";import"react-markdown";import"remark-gfm";import"react-diff-viewer-continued";export{H as allowedActionOrigins,I as assets,J as assetsBuildDirectory,K as basename,L as entry,_ as future,$ as isSpaMode,rr as prerender,tr as publicPath,or as routeDiscovery,ir as routes,pr as ssr};
+import{Y as H,Z as I,M as J,N as K,W as L,O as _,R as $,T as rr,V as tr,U as or,X as ir,Q as pr}from"./assets/server-build-BEaMCeTu.js";import"react/jsx-runtime";import"node:stream";import"@react-router/node";import"react-router";import"isbot";import"react-dom/server";import"react";import"lucide-react";import"fetch-retry";import"better-sqlite3";import"pg";import"fs";import"path";import"kysely";import"kysely/helpers/sqlite";import"kysely/helpers/postgres";import"typescript";import"fs/promises";import"os";import"prompts";import"chalk";import"crypto";import"child_process";import"url";import"util";import"dotenv";import"events";import"uuid";import"openai";import"p-queue";import"p-retry";import"@aws-sdk/client-dynamodb";import"lru-cache";import"pluralize";import"piscina";import"json5";import"@aws-sdk/util-dynamodb";import"v8";import"react-syntax-highlighter";import"react-syntax-highlighter/dist/cjs/styles/prism/index.js";import"node:crypto";import"minimatch";import"react-markdown";import"remark-gfm";import"react-diff-viewer-continued";export{H as allowedActionOrigins,I as assets,J as assetsBuildDirectory,K as basename,L as entry,_ as future,$ as isSpaMode,rr as prerender,tr as publicPath,or as routeDiscovery,ir as routes,pr as ssr};

package/codeyam-cli/src/webserver/build-info.json

@@ -1,7 +1,7 @@
 {
-  "buildTimestamp": "2026-02-12T15:28:07.923Z",
-  "buildTime": 1770910087923,
-  "buildNumber": 637,
-  "semanticVersion": "0.1.637",
-  "version": "0.1.637 (2026-02-12T15:28)"
+  "buildTimestamp": "2026-02-23T19:24:38.335Z",
+  "buildTime": 1771874678335,
+  "buildNumber": 667,
+  "semanticVersion": "0.1.667",
+  "version": "0.1.667 (2026-02-23T19:24)"
 }

package/codeyam-cli/templates/{codeyam:debug.md → codeyam-debug.md}

@@ -1,5 +1,5 @@
 ---
-name: codeyam:debug
+name: codeyam-debug
 autoApprove: true
 description: |
   Use this skill when entity analysis or capture fails with errors.

package/codeyam-cli/templates/{codeyam:diagnose.md → codeyam-diagnose.md}

@@ -1,6 +1,6 @@
 # Debug Scenario or Analysis
 
-When a user asks to debug a scenario or analysis (e.g., `/codeyam:diagnose [ID]`), use this systematic process.
+When a user asks to debug a scenario or analysis (e.g., `/codeyam-diagnose [ID]`), use this systematic process.
 
 ## Goal & Rules
 

package/codeyam-cli/templates/{codeyam:memory.md → codeyam-memory.md}

@@ -1,5 +1,5 @@
 ---
-name: codeyam:memory
+name: codeyam-memory
 autoApprove: true
 description: |
   Generate and maintain Claude Rules for your codebase based on thorough analysis.
@@ -36,7 +36,9 @@ Check if this is the first time running memory.
 
 ### 1A. Add Documentation Section to CLAUDE.md
 
-If CLAUDE.md doesn't contain a "When Confused / With Mistakes" section, add close to the top:
+If CLAUDE.md already contains a "Documenting Confusion / Mistakes" section, skip this step entirely.
+
+Otherwise, add **only** the section below — do not modify or add any other content to CLAUDE.md. If CLAUDE.md doesn't exist, create it with just a `# Project` heading followed by this section:
 
 ```markdown
 ## Continuous Documentation
@@ -56,6 +58,8 @@ It is very important to document any tribal knowledge, complex architectural dec
 Please see `.codeyam/rules/instructions.md` for guidance.
 ```
 
+**Important:** Do not add project descriptions, architecture summaries, or any other content to CLAUDE.md. Only add the exact section above.
+
 ### 1B. Verify Instructions File
 
 Check that `.codeyam/rules/instructions.md` exists (it should be created during `codeyam init`). If missing, copy it from `codeyam-cli/templates/rules-instructions.md`.
@@ -362,7 +366,7 @@ After generating rules based on your analysis and user answers:
 5. **Remind the user** to commit the new rules:
    ```
    git add .claude/rules/ .codeyam/rules/
-   git commit -m "Add rules for Claude Code (generated via /codeyam:memory)"
+   git commit -m "Add rules for Claude Code (generated via /codeyam-memory)"
    ```
 
 ---

package/codeyam-cli/templates/{codeyam:new-rule.md → codeyam-new-rule.md}

@@ -1,5 +1,5 @@
 ---
-name: codeyam:new-rule
+name: codeyam-new-rule
 autoApprove: true
 description: |
   Create a new Claude Rule for documenting codebase patterns.

package/codeyam-cli/templates/{codeyam:setup.md → codeyam-setup.md}

@@ -1,5 +1,5 @@
 ---
-name: codeyam:setup
+name: codeyam-setup
 autoApprove: true
 description: |
   Use this skill when the user asks to "setup CodeYam" or needs to configure CodeYam for their project.

package/codeyam-cli/templates/{codeyam:sim.md → codeyam-sim.md}

@@ -1,5 +1,5 @@
 ---
-name: codeyam:sim
+name: codeyam-sim
 autoApprove: true
 description: |
   Use this skill to create interactive simulations of components and functions using CodeYam's analysis.

package/codeyam-cli/templates/{codeyam:test.md → codeyam-test.md}

@@ -1,5 +1,5 @@
 ---
-name: codeyam:test
+name: codeyam-test
 autoApprove: true
 description: |
   Use this skill to write comprehensive unit and integration tests using CodeYam's mock generation.

package/codeyam-cli/templates/{codeyam:verify.md → codeyam-verify.md}

@@ -1,5 +1,5 @@
 ---
-name: codeyam:verify
+name: codeyam-verify
 autoApprove: true
 description: |
   Use this skill after making code changes that impact application functionality.

package/codeyam-cli/templates/rule-reflection-hook.py

@@ -313,7 +313,7 @@ def build_stale_rules_context(stale_rules):
     parts.append("For each rule, review the rule content and the diff of changes, then:")
     parts.append("1. Determine if the rule content needs updating based on the code changes")
     parts.append("2. Update the rule if needed")
-    parts.append("3. ALWAYS run `codeyam memory touch` to mark rules as audited\n")
+    parts.append("3. Run `codeyam memory touch <rule-path1> <rule-path2> ...` with the SPECIFIC rule paths you reviewed to mark them as audited\n")
 
     for rule in stale_rules:
         parts.append(f"### {rule['name']}")

package/codeyam-cli/templates/rules-instructions.md

@@ -54,7 +54,7 @@ A rule earns its place when it meets these criteria:
 - Debugging strategies for a particular area of the repo
 - "Use `pnpm test` to run tests" (if there is more than one way to run tests and this way is preferred)
 
-Skip things like "The auth module handles authentication" or "This function takes X and returns Y" — Claude can read the code and infer these.
+Skip things like "The auth module handles authentication" or "This function takes X and returns Y" unless creating an overview of a complex area of the app — For individual files Claude can read the code and infer these insights.
 
 ## Path Specificity
 

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@codeyam/codeyam-cli",
-  "version": "0.1.0-staging.7c30edc",
+  "version": "0.1.0-staging.80e493d",
   "description": "Local development CLI for CodeYam analysis",
   "type": "module",
   "bin": {
@@ -10,18 +10,18 @@
     "postinstall": "node ./scripts/finalize-analyzer.cjs"
   },
   "dependencies": {
-    "@anthropic-ai/claude-code": "^2.0.76",
-    "@anthropic-ai/sdk": "^0.71.0",
-    "@aws-sdk/client-dynamodb": "^3.956.0",
-    "@aws-sdk/s3-request-presigner": "^3.940.0",
-    "@aws-sdk/util-dynamodb": "^3.971.0",
-    "@modelcontextprotocol/sdk": "^1.25.3",
+    "@anthropic-ai/claude-code": "^2.1.7",
+    "@anthropic-ai/sdk": "^0.74.0",
+    "@aws-sdk/client-dynamodb": "^3.990.0",
+    "@aws-sdk/s3-request-presigner": "^3.990.0",
+    "@aws-sdk/util-dynamodb": "^3.990.0",
+    "@modelcontextprotocol/sdk": "^1.26.0",
     "@octokit/auth-app": "^8.1.0",
     "@octokit/request": "^10.0.3",
     "@octokit/rest": "^22.0.0",
-    "@react-router/express": "^7.11.0",
+    "@react-router/express": "^7.13.0",
     "@react-router/node": "^7.11.0",
-    "react-router": "^7.12.0",
+    "react-router": "^7.13.0",
     "@sendgrid/mail": "^8.1.4",
     "@supabase/supabase-js": "2.88.0",
     "better-sqlite3": "^12.4.1",
@@ -33,13 +33,13 @@
     "express": "^5.2.1",
     "fetch-retry": "^6.0.0",
     "get-port": "^7.1.0",
-    "htmlparser2": "^10.0.0",
+    "htmlparser2": "^10.1.0",
     "isbot": "^4",
     "jsdom": "^27.4.0",
     "json5": "^2.2.3",
     "jsonc-parser": "^3.2.1",
-    "kysely": "^0.28.5",
-    "lru-cache": "^11.2.4",
+    "kysely": "^0.28.11",
+    "lru-cache": "^11.2.5",
     "lucide-react": "^0.556.0",
     "minimatch": "^10.0.1",
     "openai": "^6.16.0",

package/packages/ai/index.js

@@ -26,7 +26,7 @@ export { default as describeCodeChange } from "./src/lib/describeCodeChange.js";
 export { default as validateTypeStructure } from "./src/lib/validateTypeStructure.js";
 export { default as validateDataStructure } from "./src/lib/validateDataStructure.js";
 export { default as isolateScopes } from "./src/lib/isolateScopes.js";
-export { default as analyzeScope, destroyWorkerPool, } from "./src/lib/analyzeScope.js";
+export { default as analyzeScope, destroyWorkerPool, skipWorkerPool, } from "./src/lib/analyzeScope.js";
 export { default as logOrderedMap } from "./src/lib/logOrderedMap.js";
 export { default as splitOutsideParentheses, splitOutsideParenthesesAndArrays, joinParenthesesAndArrays, functionArguments, } from "./src/lib/splitOutsideParentheses.js";
 export { cleanKnownObjectFunctionsFromMapping } from "./src/lib/dataStructure/helpers/cleanKnownObjectFunctions.js";

package/packages/ai/index.js.map

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package/packages/ai/src/lib/analyzeScope.js

@@ -35,6 +35,18 @@ import fs from 'fs';
 // Worker pool for offloading analyzeScope to worker threads
 let workerPool = null;
 let workerPoolDestroyed = false;
+let workerPoolSkipped = false;
+/**
+ * Skip worker pool initialization for the current session.
+ *
+ * The worker thread creates its own ProjectAnalyzer (ts.Program), which takes
+ * 50-70s — far longer than the actual entity processing (<2s for typical batches).
+ * When the entity count is small, running analyzeScopeLocal on the main thread
+ * reuses the existing ProjectAnalyzer and avoids this overhead entirely.
+ */
+export function skipWorkerPool() {
+    workerPoolSkipped = true;
+}
 /**
  * Check if we're in Node.js main thread
  * Returns true for browser environments (where workers don't apply)
@@ -83,6 +95,8 @@ function ensureWorkerPool() {
         throw new Error('CodeYam: Worker pool was destroyed (post-producing phase). ' +
             'analyzeScope should not be called after data structure preparation completes.');
     }
+    if (workerPoolSkipped)
+        return;
     if (workerPool !== null)
         return;
     // Only initialize worker pool in Node.js environment

package/packages/ai/src/lib/analyzeScope.js.map

@@ -1 +1 @@
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package/packages/ai/src/lib/dataStructure/ScopeDataStructure.js

@@ -2306,6 +2306,21 @@ export class ScopeDataStructure {
      * ensure all sub-paths of that variable are reflected under signature[N].
      */
     propagateParameterToSignaturePaths(scopeNode) {
+        // Helper: check if a type is a concrete scalar that cannot have sub-properties.
+        const SCALAR_TYPES = new Set([
+            'string',
+            'number',
+            'boolean',
+            'bigint',
+            'symbol',
+            'void',
+            'never',
+        ]);
+        const isDefinitelyScalar = (type) => {
+            const parts = type.split('|').map((s) => s.trim());
+            const base = parts.filter((s) => s !== 'undefined' && s !== 'null');
+            return base.length > 0 && base.every((b) => SCALAR_TYPES.has(b));
+        };
         // Find variable → signature[N] equivalencies
         for (const [varName, equivalencies] of Object.entries(scopeNode.equivalencies)) {
             // Only process simple variable names (no dots, brackets, or parens)
@@ -2327,7 +2342,37 @@ export class ScopeDataStructure {
                             const sigKey = signaturePath + suffix;
                             // Only add if the signature path doesn't already exist
                             if (!scopeNode.schema[sigKey]) {
-                                scopeNode.schema[sigKey] = scopeNode.schema[key];
+                                // Check if this path represents variable conflation:
+                                // When a standalone variable (e.g., showWorkoutForm from useState)
+                                // appears as a sub-property of a scalar-typed ancestor (e.g.,
+                                // activity_type = "string"), it's from scope conflation, not real
+                                // property access. Block these while allowing legitimate built-in
+                                // accesses like string.length or string.slice.
+                                let isConflatedPath = false;
+                                let checkPos = signaturePath.length;
+                                while (true) {
+                                    checkPos = sigKey.indexOf('.', checkPos + 1);
+                                    if (checkPos === -1)
+                                        break;
+                                    const ancestorPath = sigKey.substring(0, checkPos);
+                                    const ancestorType = scopeNode.schema[ancestorPath];
+                                    if (ancestorType && isDefinitelyScalar(ancestorType)) {
+                                        // Ancestor is scalar — check if the immediate sub-property
+                                        // is also a standalone variable (indicating conflation)
+                                        const afterDot = sigKey.substring(checkPos + 1);
+                                        const nextSep = afterDot.search(/[.\[]/);
+                                        const subPropName = nextSep === -1
+                                            ? afterDot
+                                            : afterDot.substring(0, nextSep);
+                                        if (scopeNode.schema[subPropName] !== undefined) {
+                                            isConflatedPath = true;
+                                            break;
+                                        }
+                                    }
+                                }
+                                if (!isConflatedPath) {
+                                    scopeNode.schema[sigKey] = scopeNode.schema[key];
+                                }
                             }
                         }
                     }
@@ -2900,6 +2945,23 @@ export class ScopeDataStructure {
                 }
             }
         }
+        // Helper: check if a type is a concrete scalar that cannot have sub-properties.
+        // e.g., "string", "number | undefined", "boolean | null" are scalar.
+        // "object", "array", "function", "unknown", "Workout", etc. are NOT scalar.
+        const SCALAR_TYPES = new Set([
+            'string',
+            'number',
+            'boolean',
+            'bigint',
+            'symbol',
+            'void',
+            'never',
+        ]);
+        const isDefinitelyScalarType = (type) => {
+            const parts = type.split('|').map((s) => s.trim());
+            const base = parts.filter((s) => s !== 'undefined' && s !== 'null');
+            return base.length > 0 && base.every((b) => SCALAR_TYPES.has(b));
+        };
         // Propagate nested paths from variables to their signature equivalents
         // e.g., if workouts = signature[0].workouts, then workouts[].title becomes
         // signature[0].workouts[].title
@@ -2919,7 +2981,67 @@ export class ScopeDataStructure {
                     const signatureKey = signaturePath + suffix;
                     // Add to schema if not already present
                     if (!tempScopeNode.schema[signatureKey]) {
-                        tempScopeNode.schema[signatureKey] = schema[schemaKey];
+                        // Check if this path represents variable conflation:
+                        // When a standalone variable (e.g., showWorkoutForm from useState)
+                        // appears as a sub-property of a scalar-typed ancestor (e.g.,
+                        // activity_type = "string"), it's from scope conflation, not real
+                        // property access. Block these while allowing legitimate built-in
+                        // accesses like string.length or string.slice.
+                        let isConflatedPath = false;
+                        let checkPos = signaturePath.length;
+                        while (true) {
+                            checkPos = signatureKey.indexOf('.', checkPos + 1);
+                            if (checkPos === -1)
+                                break;
+                            const ancestorPath = signatureKey.substring(0, checkPos);
+                            const ancestorType = tempScopeNode.schema[ancestorPath];
+                            if (ancestorType && isDefinitelyScalarType(ancestorType)) {
+                                // Ancestor is scalar — check if the immediate sub-property
+                                // is also a standalone variable (indicating conflation)
+                                const afterDot = signatureKey.substring(checkPos + 1);
+                                const nextSep = afterDot.search(/[.\[]/);
+                                const subPropName = nextSep === -1 ? afterDot : afterDot.substring(0, nextSep);
+                                if (schema[subPropName] !== undefined) {
+                                    isConflatedPath = true;
+                                    break;
+                                }
+                            }
+                        }
+                        if (!isConflatedPath) {
+                            tempScopeNode.schema[signatureKey] = schema[schemaKey];
+                        }
+                    }
+                }
+            }
+        }
+        // Post-process: filter out conflated signature paths.
+        // During phase 2 scope analysis, useState(false) conflation can create
+        // bad paths like signature[0].mockWorkouts[].activity_type.showWorkoutForm
+        // directly in scopeNode.schema. These flow through signatureInSchema into
+        // tempScopeNode.schema without any guard. Filter them out here by checking:
+        //   1. An ancestor in the path has a concrete scalar type (string, number, boolean, etc.)
+        //   2. The immediate sub-property of that scalar ancestor is also a standalone
+        //      variable in the schema (indicating conflation, not a real property access)
+        for (const key of Object.keys(tempScopeNode.schema)) {
+            if (!key.startsWith('signature['))
+                continue;
+            // Walk through the path looking for scalar-typed ancestors
+            let pos = 0;
+            while (true) {
+                pos = key.indexOf('.', pos + 1);
+                if (pos === -1)
+                    break;
+                const ancestorPath = key.substring(0, pos);
+                const ancestorType = tempScopeNode.schema[ancestorPath];
+                if (ancestorType && isDefinitelyScalarType(ancestorType)) {
+                    // Found a scalar ancestor — check if the sub-property name
+                    // is a standalone variable in the getSchema() result
+                    const afterDot = key.substring(pos + 1);
+                    const nextSep = afterDot.search(/[.\[]/);
+                    const subPropName = nextSep === -1 ? afterDot : afterDot.substring(0, nextSep);
+                    if (schema[subPropName] !== undefined) {
+                        delete tempScopeNode.schema[key];
+                        break;
                     }
                 }
             }
@@ -3534,7 +3656,95 @@ export class ScopeDataStructure {
         // Replace cyScope placeholders in all external function call data
         // This ensures call signatures and schema paths use actual callback text
         // instead of internal cyScope names, preventing mock data merge conflicts.
-        return this.externalFunctionCalls.map((efc) => this.cleanCyScopeFromFunctionCallInfo(efc));
+        const rootScopeName = this.scopeTreeManager.getRootName();
+        const rootSchema = this.scopeNodes[rootScopeName]?.schema ?? {};
+        return this.externalFunctionCalls.map((efc) => {
+            const cleaned = this.cleanCyScopeFromFunctionCallInfo(efc);
+            return this.filterConflatedExternalPaths(cleaned, rootSchema);
+        });
+    }
+    /**
+     * Filters out conflated paths from external function call schemas.
+     *
+     * When multiple useState(false) calls create equivalency conflation during
+     * Phase 1 analysis, standalone boolean state variables (like showWorkoutForm,
+     * showGoalForm) can bleed into external function call schemas as sub-properties
+     * of unrelated data fields (like data[].activity_type.showWorkoutForm).
+     *
+     * Detection: group sub-properties by parent path. If 2+ sub-properties of
+     * the same parent all match standalone root scope variable names, treat them
+     * as conflation artifacts and remove them.
+     */
+    filterConflatedExternalPaths(efc, rootSchema) {
+        // Build a set of top-level root scope variable names (simple names, no dots/brackets)
+        const topLevelRootVars = new Set();
+        for (const key of Object.keys(rootSchema)) {
+            if (!key.includes('.') && !key.includes('[')) {
+                topLevelRootVars.add(key);
+            }
+        }
+        if (topLevelRootVars.size === 0)
+            return efc;
+        // Group sub-property matches by their parent path.
+        // For a path like "...data[].activity_type.showWorkoutForm",
+        // parent = "...data[].activity_type", child = "showWorkoutForm"
+        const parentToConflatedKeys = new Map();
+        for (const key of Object.keys(efc.schema)) {
+            const lastDot = key.lastIndexOf('.');
+            if (lastDot === -1)
+                continue;
+            const parent = key.substring(0, lastDot);
+            const child = key.substring(lastDot + 1);
+            // Skip array access or function call patterns
+            if (child.includes('[') || child.includes('('))
+                continue;
+            // Only consider paths inside array element chains (contains []).
+            // Direct children of functionCallReturnValue are legitimate destructured
+            // return values, not conflation. Conflation happens deeper in the chain
+            // when array element fields get corrupted sub-properties.
+            if (!parent.includes('['))
+                continue;
+            if (topLevelRootVars.has(child)) {
+                if (!parentToConflatedKeys.has(parent)) {
+                    parentToConflatedKeys.set(parent, []);
+                }
+                parentToConflatedKeys.get(parent).push(key);
+            }
+        }
+        // Only filter when 2+ sub-properties of the same parent match root scope vars.
+        // This threshold avoids false positives from coincidental name matches.
+        const keysToRemove = new Set();
+        const parentsToRestore = new Set();
+        for (const [parent, conflatedKeys] of parentToConflatedKeys) {
+            if (conflatedKeys.length >= 2) {
+                for (const key of conflatedKeys) {
+                    keysToRemove.add(key);
+                }
+                parentsToRestore.add(parent);
+            }
+        }
+        if (keysToRemove.size === 0)
+            return efc;
+        // Create a new schema without the conflated paths
+        const newSchema = {};
+        for (const [key, value] of Object.entries(efc.schema)) {
+            if (keysToRemove.has(key))
+                continue;
+            // Restore parent type: if it was changed to "object" because of conflated
+            // sub-properties, and now all those sub-properties are removed, change it
+            // back to "unknown" (we don't know the original type)
+            if (parentsToRestore.has(key) && value === 'object') {
+                // Check if there are any remaining sub-properties
+                const hasRemainingSubProps = Object.keys(efc.schema).some((k) => !keysToRemove.has(k) &&
+                    k !== key &&
+                    (k.startsWith(key + '.') || k.startsWith(key + '[')));
+                newSchema[key] = hasRemainingSubProps ? value : 'unknown';
+            }
+            else {
+                newSchema[key] = value;
+            }
+        }
+        return { ...efc, schema: newSchema };
     }
     /**
      * Cleans cyScope placeholder references from a FunctionCallInfo.