@codeyam/codeyam-cli 0.1.0-staging.483fdc2 → 0.1.0-staging.57cd50f

package/analyzer-template/packages/github/dist/database/src/lib/loadCommits.js

@@ -2,6 +2,7 @@ import { getDatabase, getJsonHelper } from './kysely/db';
 import dbToCommit from './dbToCommit';
 import { awsLog } from '~codeyam/utils';
 import { ScenariosTableColumns } from './kysely/tables/scenariosTable';
+import { CommitsTableColumnsLite } from './kysely/tables/commitsTable';
 import { sql } from 'kysely';
 async function loadBranchesForCommits(commitIds) {
     if (commitIds.length === 0)
@@ -102,19 +103,28 @@ export default async function loadCommits({ projectId, branchId, ids, shas, file
     const { jsonObjectFrom } = getJsonHelper();
     const startTime = Date.now();
     try {
-        let query = db
-            .selectFrom('commits')
-            .selectAll('commits')
-            .select((eb) => [
-            jsonObjectFrom(eb
-                .selectFrom('github_users')
-                .select([
-                'username',
-                'preferred_username as preferredUsername',
-                'avatar_url as avatarUrl',
-            ])
-                .where('github_users.username', '=', eb.ref('commits.author_github_username'))).as('author'),
-        ]);
+        // When skipRelations is true, use lite columns (excludes 'files' which can be 1MB+ per commit)
+        // and skip the author subquery for maximum efficiency
+        let query;
+        if (skipRelations) {
+            const liteColumns = CommitsTableColumnsLite.map((col) => `commits.${col}`);
+            query = db.selectFrom('commits').select(liteColumns);
+        }
+        else {
+            query = db
+                .selectFrom('commits')
+                .selectAll('commits')
+                .select((eb) => [
+                jsonObjectFrom(eb
+                    .selectFrom('github_users')
+                    .select([
+                    'username',
+                    'preferred_username as preferredUsername',
+                    'avatar_url as avatarUrl',
+                ])
+                    .where('github_users.username', '=', eb.ref('commits.author_github_username'))).as('author'),
+            ]);
+        }
         if (projectId) {
             query = query.where('project_id', '=', projectId);
         }

package/analyzer-template/packages/github/dist/database/src/lib/loadCommits.js.map

@@ -1 +1 @@
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package/analyzer-template/packages/github/dist/database/src/lib/loadReadyToBeCapturedAnalyses.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"loadReadyToBeCapturedAnalyses.d.ts","sourceRoot":"","sources":["../../../../../database/src/lib/loadReadyToBeCapturedAnalyses.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,gBAAgB,CAAC;AAS1C,MAAM,WAAW,iCAAiC;IAChD,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,GAAG,CAAC,EAAE,MAAM,EAAE,CAAC;IACf,eAAe,CAAC,EAAE,MAAM,CAAC;CAC1B;AAED,wBAA8B,6BAA6B,CACzD,MAAM,EAAE,iCAAiC,GACxC,OAAO,CAAC,QAAQ,EAAE,CAAC,CAmFrB"}
+{"version":3,"file":"loadReadyToBeCapturedAnalyses.d.ts","sourceRoot":"","sources":["../../../../../database/src/lib/loadReadyToBeCapturedAnalyses.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,gBAAgB,CAAC;AAS1C,MAAM,WAAW,iCAAiC;IAChD,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,GAAG,CAAC,EAAE,MAAM,EAAE,CAAC;IACf,eAAe,CAAC,EAAE,MAAM,CAAC;CAC1B;AAED,wBAA8B,6BAA6B,CACzD,MAAM,EAAE,iCAAiC,GACxC,OAAO,CAAC,QAAQ,EAAE,CAAC,CA8ErB"}

package/analyzer-template/packages/github/dist/database/src/lib/loadReadyToBeCapturedAnalyses.js

@@ -27,10 +27,7 @@ export default async function loadReadyToBeCapturedAnalyses(params) {
         // PostgreSQL: jsonb `true` auto-casts to string 'true' for comparison
         // SQLite: -> returns text 'true' which equals string 'true'
         // (Note: ->> returns integer 1 in SQLite for booleans, breaking string comparisons)
-        .where(sql `${sql.ref('analyses.status')} -> 'readyToBeCaptured'`, '=', 'true')
-        // Exclude entities that are not exported - they cannot be captured because they can't be imported
-        // Use -> operator for cross-database boolean comparison
-        .where(sql `(${sql.ref('entities.metadata')} -> 'notExported') IS NULL OR (${sql.ref('entities.metadata')} -> 'notExported') != 'true'`);
+        .where(sql `${sql.ref('analyses.status')} -> 'readyToBeCaptured'`, '=', 'true');
     if (projectId) {
         query = query.where('analyses.project_id', '=', projectId);
     }

package/analyzer-template/packages/github/dist/database/src/lib/loadReadyToBeCapturedAnalyses.js.map

@@ -1 +1 @@
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package/analyzer-template/packages/github/dist/database/src/lib/projectToDb.js

@@ -1,4 +1,4 @@
-import { randomUUID } from 'crypto';
+const randomUUID = () => crypto.randomUUID();
 export default function projectToDb(project) {
     const { id, files, branches, team, analyzedAt, contentChangedAt, createdAt, updatedAt, metadata, ...remaining } = project;
     return {

package/analyzer-template/packages/github/dist/database/src/lib/projectToDb.js.map

@@ -1 +1 @@
-{"version":3,"file":"projectToDb.js","sourceRoot":"","sources":["../../../../../database/src/lib/projectToDb.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,UAAU,EAAE,MAAM,QAAQ,CAAC;AAEpC,MAAM,CAAC,OAAO,UAAU,WAAW,CACjC,OAAgB;IAEhB,MAAM,EACJ,EAAE,EACF,KAAK,EACL,QAAQ,EACR,IAAI,EACJ,UAAU,EACV,gBAAgB,EAChB,SAAS,EACT,SAAS,EACT,QAAQ,EACR,GAAG,SAAS,EACb,GAAG,OAAO,CAAC;IAEZ,OAAO;QACL,GAAG,SAAS;QACZ,EAAE,EAAE,EAAE,IAAI,UAAU,EAAE;QACtB,WAAW,EAAE,UAAU,IAAI,IAAI;QAC/B,kBAAkB,EAAE,gBAAgB,IAAI,IAAI;QAC5C,UAAU,EAAE,SAAS,IAAI,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;QACjD,UAAU,EAAE,SAAS,IAAI,IAAI;QAC7B,QAAQ,EAAE,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,IAAI;QACpD,gEAAgE;QAChE,YAAY,EAAE,IAAI;QAClB,aAAa,EAAE,IAAI;QACnB,OAAO,EAAE,IAAI;KACd,CAAC;AACJ,CAAC"}
+{"version":3,"file":"projectToDb.js","sourceRoot":"","sources":["../../../../../database/src/lib/projectToDb.ts"],"names":[],"mappings":"AAGA,MAAM,UAAU,GAAG,GAAG,EAAE,CAAC,MAAM,CAAC,UAAU,EAAE,CAAC;AAE7C,MAAM,CAAC,OAAO,UAAU,WAAW,CACjC,OAAgB;IAEhB,MAAM,EACJ,EAAE,EACF,KAAK,EACL,QAAQ,EACR,IAAI,EACJ,UAAU,EACV,gBAAgB,EAChB,SAAS,EACT,SAAS,EACT,QAAQ,EACR,GAAG,SAAS,EACb,GAAG,OAAO,CAAC;IAEZ,OAAO;QACL,GAAG,SAAS;QACZ,EAAE,EAAE,EAAE,IAAI,UAAU,EAAE;QACtB,WAAW,EAAE,UAAU,IAAI,IAAI;QAC/B,kBAAkB,EAAE,gBAAgB,IAAI,IAAI;QAC5C,UAAU,EAAE,SAAS,IAAI,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;QACjD,UAAU,EAAE,SAAS,IAAI,IAAI;QAC7B,QAAQ,EAAE,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,IAAI;QACpD,gEAAgE;QAChE,YAAY,EAAE,IAAI;QAClB,aAAa,EAAE,IAAI;QACnB,OAAO,EAAE,IAAI;KACd,CAAC;AACJ,CAAC"}

package/analyzer-template/packages/github/dist/database/src/lib/saveFiles.js

@@ -1,6 +1,6 @@
 import { getDatabase } from './kysely/db';
 import dbToFile from './dbToFile';
-import { randomUUID } from 'crypto';
+const randomUUID = () => crypto.randomUUID();
 const BATCH_SIZE = 100;
 export default async function saveFiles(newFiles) {
     if (newFiles.length === 0)

package/analyzer-template/packages/github/dist/database/src/lib/saveFiles.js.map

@@ -1 +1 @@
-{"version":3,"file":"saveFiles.js","sourceRoot":"","sources":["../../../../../database/src/lib/saveFiles.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAC1C,OAAO,QAAQ,MAAM,YAAY,CAAC;AAIlC,OAAO,EAAE,UAAU,EAAE,MAAM,QAAQ,CAAC;AAEpC,MAAM,UAAU,GAAG,GAAG,CAAC;AAEvB,MAAM,CAAC,OAAO,CAAC,KAAK,UAAU,SAAS,CACrC,QAAkC;IAElC,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,EAAE,CAAC;IAErC,MAAM,EAAE,GAAG,WAAW,EAAE,CAAC;IACzB,MAAM,aAAa,GAA6B,EAAE,CAAC;IAEnD,QAAQ,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;QACjC,GAAG,IAAI;QACP,EAAE,EAAE,IAAI,CAAC,EAAE,IAAI,UAAU,EAAE;QAC3B,UAAU,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;KACrC,CAAC,CAAC,CAAC;IAEJ,IAAI,CAAC;QACH,+CAA+C;QAC/C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,IAAI,UAAU,EAAE,CAAC;YACrD,MAAM,KAAK,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,CAAC;YAEhD,MAAM,UAAU,GAAG,MAAM,EAAE;iBACxB,UAAU,CAAC,OAAO,CAAC;iBACnB,MAAM,CAAC,KAAK,CAAC;iBACb,YAAY,EAAE;iBACd,OAAO,EAAE,CAAC;YAEb,aAAa,CAAC,IAAI,CAAC,GAAG,UAAU,CAAC,CAAC;QACpC,CAAC;QAED,OAAO,aAAa,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;IACrC,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,OAAO,CAAC,GAAG,CAAC,mCAAmC,EAAE,KAAK,CAAC,CAAC;QACxD,OAAO,EAAE,CAAC;IACZ,CAAC;AACH,CAAC"}
+{"version":3,"file":"saveFiles.js","sourceRoot":"","sources":["../../../../../database/src/lib/saveFiles.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAC1C,OAAO,QAAQ,MAAM,YAAY,CAAC;AAIlC,MAAM,UAAU,GAAG,GAAG,EAAE,CAAC,MAAM,CAAC,UAAU,EAAE,CAAC;AAE7C,MAAM,UAAU,GAAG,GAAG,CAAC;AAEvB,MAAM,CAAC,OAAO,CAAC,KAAK,UAAU,SAAS,CACrC,QAAkC;IAElC,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,EAAE,CAAC;IAErC,MAAM,EAAE,GAAG,WAAW,EAAE,CAAC;IACzB,MAAM,aAAa,GAA6B,EAAE,CAAC;IAEnD,QAAQ,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;QACjC,GAAG,IAAI;QACP,EAAE,EAAE,IAAI,CAAC,EAAE,IAAI,UAAU,EAAE;QAC3B,UAAU,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;KACrC,CAAC,CAAC,CAAC;IAEJ,IAAI,CAAC;QACH,+CAA+C;QAC/C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,IAAI,UAAU,EAAE,CAAC;YACrD,MAAM,KAAK,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,CAAC;YAEhD,MAAM,UAAU,GAAG,MAAM,EAAE;iBACxB,UAAU,CAAC,OAAO,CAAC;iBACnB,MAAM,CAAC,KAAK,CAAC;iBACb,YAAY,EAAE;iBACd,OAAO,EAAE,CAAC;YAEb,aAAa,CAAC,IAAI,CAAC,GAAG,UAAU,CAAC,CAAC;QACpC,CAAC;QAED,OAAO,aAAa,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;IACrC,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,OAAO,CAAC,GAAG,CAAC,mCAAmC,EAAE,KAAK,CAAC,CAAC;QACxD,OAAO,EAAE,CAAC;IACZ,CAAC;AACH,CAAC"}

package/analyzer-template/packages/github/dist/database/src/lib/scenarioToDb.js

@@ -1,4 +1,4 @@
-import { randomUUID } from 'crypto';
+const randomUUID = () => crypto.randomUUID();
 export default function scenarioToDb(scenario) {
     const { id, projectId, analysisId, previousVersionId, analysis, metadata, data, ...remaining } = scenario;
     delete remaining.userScenarios;

package/analyzer-template/packages/github/dist/database/src/lib/scenarioToDb.js.map

@@ -1 +1 @@
-{"version":3,"file":"scenarioToDb.js","sourceRoot":"","sources":["../../../../../database/src/lib/scenarioToDb.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,UAAU,EAAE,MAAM,QAAQ,CAAC;AAEpC,MAAM,CAAC,OAAO,UAAU,YAAY,CAClC,QAAkB;IAElB,MAAM,EACJ,EAAE,EACF,SAAS,EACT,UAAU,EACV,iBAAiB,EACjB,QAAQ,EACR,QAAQ,EACR,IAAI,EACJ,GAAG,SAAS,EACb,GAAG,QAAQ,CAAC;IAEb,OAAO,SAAS,CAAC,aAAa,CAAC;IAC/B,OAAO,SAAS,CAAC,QAAQ,CAAC;IAE1B,IAAI,YAAY,IAAI,SAAS,EAAE,CAAC;QAC9B,OAAO,SAAS,CAAC,UAAU,CAAC;IAC9B,CAAC;IAED,OAAO;QACL,GAAG,SAAS;QACZ,EAAE,EAAE,EAAE,IAAI,UAAU,EAAE;QACtB,QAAQ,EAAE,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,IAAI;QACpD,UAAU,EAAE,SAAS;QACrB,WAAW,EAAE,UAAU;QACvB,mBAAmB,EAAE,iBAAiB;KACvC,CAAC;AACJ,CAAC"}
+{"version":3,"file":"scenarioToDb.js","sourceRoot":"","sources":["../../../../../database/src/lib/scenarioToDb.ts"],"names":[],"mappings":"AAGA,MAAM,UAAU,GAAG,GAAG,EAAE,CAAC,MAAM,CAAC,UAAU,EAAE,CAAC;AAE7C,MAAM,CAAC,OAAO,UAAU,YAAY,CAClC,QAAkB;IAElB,MAAM,EACJ,EAAE,EACF,SAAS,EACT,UAAU,EACV,iBAAiB,EACjB,QAAQ,EACR,QAAQ,EACR,IAAI,EACJ,GAAG,SAAS,EACb,GAAG,QAAQ,CAAC;IAEb,OAAO,SAAS,CAAC,aAAa,CAAC;IAC/B,OAAO,SAAS,CAAC,QAAQ,CAAC;IAE1B,IAAI,YAAY,IAAI,SAAS,EAAE,CAAC;QAC9B,OAAO,SAAS,CAAC,UAAU,CAAC;IAC9B,CAAC;IAED,OAAO;QACL,GAAG,SAAS;QACZ,EAAE,EAAE,EAAE,IAAI,UAAU,EAAE;QACtB,QAAQ,EAAE,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,IAAI;QACpD,UAAU,EAAE,SAAS;QACrB,WAAW,EAAE,UAAU;QACvB,mBAAmB,EAAE,iBAAiB;KACvC,CAAC;AACJ,CAAC"}

package/analyzer-template/packages/github/dist/database/src/lib/updateCommitMetadata.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"updateCommitMetadata.d.ts","sourceRoot":"","sources":["../../../../../database/src/lib/updateCommitMetadata.ts"],"names":[],"mappings":"AAIA,OAAO,EAAE,cAAc,EAAE,eAAe,EAAE,MAAM,gBAAgB,CAAC;AAGjE,OAAO,EAAa,UAAU,EAAE,MAAM,mBAAmB,CAAC;AAE1D,KAAK,wBAAwB,GAAG;IAC9B,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,cAAc,CAAC,EAAE,UAAU,CAAC,cAAc,CAAC,CAAC;IAC5C,eAAe,CAAC,EAAE,UAAU,CAAC,eAAe,CAAC,CAAC;IAC9C,iBAAiB,CAAC,EAAE,OAAO,CAAC;IAC5B,cAAc,CAAC,EAAE,CAAC,QAAQ,EAAE,cAAc,KAAK,IAAI,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;CACrE,CAAC;AAEF,wBAA8B,oBAAoB,CAAC,EACjD,QAAQ,EACR,SAAS,EACT,cAAc,EACd,eAAe,EACf,iBAAiB,EACjB,cAAc,GACf,EAAE,wBAAwB,GAAG,OAAO,CAAC,cAAc,GAAG,IAAI,CAAC,CA0J3D"}
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package/analyzer-template/packages/github/dist/database/src/lib/updateCommitMetadata.js

@@ -2,100 +2,111 @@ import { getDatabase } from './kysely/db';
 import { awsLog } from '~codeyam/utils';
 import { deepMerge } from './jsonUpdateUtils';
 export default async function updateCommitMetadata({ commitId, commitSha, metadataUpdate, runStatusUpdate, archiveCurrentRun, updateCallback, }) {
-    try {
-        return await getDatabase()
-            .transaction()
-            .execute(async (trx) => {
-            // Only select what we need - the files column can be 1MB+ and kills performance
-            // If updateCallback is provided, it might need the full commit, so use selectAll
-            const commit = await trx
-                .selectFrom('commits')
-                .select(['id', 'metadata'])
-                .$if(!!commitId, (qb) => qb.where('id', '=', commitId))
-                .$if(!!commitSha, (qb) => qb.where('sha', '=', commitSha))
-                .executeTakeFirst();
-            if (!commit) {
-                awsLog(`CodeYam Error: updateCommitMetadata(): Commit ${commitId} not found`);
-                return null;
-            }
-            // Initialize metadata if it doesn't exist (metadata is already parsed from DB)
-            const currentMetadata = commit.metadata || {};
-            // if the convenience parameter for latest run was supplied, merge it in
-            if (runStatusUpdate) {
-                runStatusUpdate.lastUpdatedAt ?? (runStatusUpdate.lastUpdatedAt = new Date().toISOString());
-                if (runStatusUpdate.currentEntityShas !== undefined) {
-                    console.log(`[updateCommitMetadata] Updating currentRun.currentEntityShas`);
+    const MAX_RETRIES = 4;
+    const BASE_DELAY_MS = 250;
+    for (let attempt = 0; attempt <= MAX_RETRIES; attempt++) {
+        try {
+            return await getDatabase()
+                .transaction()
+                .execute(async (trx) => {
+                // Only select what we need - the files column can be 1MB+ and kills performance
+                // If updateCallback is provided, it might need the full commit, so use selectAll
+                const commit = await trx
+                    .selectFrom('commits')
+                    .select(['id', 'metadata'])
+                    .$if(!!commitId, (qb) => qb.where('id', '=', commitId))
+                    .$if(!!commitSha, (qb) => qb.where('sha', '=', commitSha))
+                    .executeTakeFirst();
+                if (!commit) {
+                    awsLog(`CodeYam Error: updateCommitMetadata(): Commit ${commitId} not found`);
+                    return null;
+                }
+                // Initialize metadata if it doesn't exist (metadata is already parsed from DB)
+                const currentMetadata = commit.metadata || {};
+                // if the convenience parameter for latest run was supplied, merge it in
+                if (runStatusUpdate) {
+                    runStatusUpdate.lastUpdatedAt ?? (runStatusUpdate.lastUpdatedAt = new Date().toISOString());
+                    if (runStatusUpdate.currentEntityShas !== undefined) {
+                        console.log(`[updateCommitMetadata] Updating currentRun.currentEntityShas`);
+                        console.log(`[updateCommitMetadata] Commit SHA: ${commitSha}`);
+                        console.log(`[updateCommitMetadata] Previous entity SHAs:`, currentMetadata.currentRun?.currentEntityShas);
+                        console.log(`[updateCommitMetadata] New entity SHAs:`, runStatusUpdate.currentEntityShas);
+                        console.log(`[updateCommitMetadata] Archive flag:`, archiveCurrentRun);
+                    }
+                    metadataUpdate = deepMerge(metadataUpdate ?? {}, {
+                        currentRun: runStatusUpdate,
+                    });
+                }
+                else if (!metadataUpdate && !updateCallback) {
+                    return currentMetadata; // nothing to update
+                }
+                // Deep merge the baseline status updates
+                const updatedMetadata = metadataUpdate
+                    ? deepMerge(currentMetadata, metadataUpdate)
+                    : currentMetadata;
+                // Archive current run if requested
+                if (archiveCurrentRun && updatedMetadata.currentRun) {
+                    console.log(`[updateCommitMetadata] ========================================`);
+                    console.log(`[updateCommitMetadata] ARCHIVING CURRENT RUN`);
                     console.log(`[updateCommitMetadata] Commit SHA: ${commitSha}`);
-                    console.log(`[updateCommitMetadata] Previous entity SHAs:`, currentMetadata.currentRun?.currentEntityShas);
-                    console.log(`[updateCommitMetadata] New entity SHAs:`, runStatusUpdate.currentEntityShas);
-                    console.log(`[updateCommitMetadata] Archive flag:`, archiveCurrentRun);
+                    console.log(`[updateCommitMetadata] Current run entity SHAs:`, updatedMetadata.currentRun.currentEntityShas);
+                    console.log(`[updateCommitMetadata] Current run PIDs: analyzer=${updatedMetadata.currentRun.analyzerPid}, capture=${updatedMetadata.currentRun.capturePid}`);
+                    console.log(`[updateCommitMetadata] Current run completed: analyses=${updatedMetadata.currentRun.analysesCompleted}, captures=${updatedMetadata.currentRun.capturesCompleted}`);
+                    console.log(`[updateCommitMetadata] Historical runs before archiving: ${updatedMetadata.historicalRuns?.length || 0}`);
+                    const runToArchive = {
+                        ...updatedMetadata.currentRun,
+                        archivedAt: new Date().toISOString(),
+                    };
+                    console.log(`[updateCommitMetadata] Run to archive:`, JSON.stringify(runToArchive, null, 2));
+                    updatedMetadata.historicalRuns = [
+                        ...(updatedMetadata.historicalRuns || []),
+                        runToArchive,
+                    ];
+                    console.log(`[updateCommitMetadata] Historical runs after archiving: ${updatedMetadata.historicalRuns.length}`);
+                    console.log(`[updateCommitMetadata] All historical runs:`, JSON.stringify(updatedMetadata.historicalRuns.map((r) => ({
+                        entityShas: r.currentEntityShas,
+                        archivedAt: r.archivedAt,
+                        completed: {
+                            analyses: r.analysesCompleted,
+                            captures: r.capturesCompleted,
+                        },
+                    })), null, 2));
+                    console.log(`[updateCommitMetadata] ========================================`);
                 }
-                metadataUpdate = deepMerge(metadataUpdate ?? {}, {
-                    currentRun: runStatusUpdate,
-                });
-            }
-            else if (!metadataUpdate && !updateCallback) {
-                return currentMetadata; // nothing to update
-            }
-            // Deep merge the baseline status updates
-            const updatedMetadata = metadataUpdate
-                ? deepMerge(currentMetadata, metadataUpdate)
-                : currentMetadata;
-            // Archive current run if requested
-            if (archiveCurrentRun && updatedMetadata.currentRun) {
-                console.log(`[updateCommitMetadata] ========================================`);
-                console.log(`[updateCommitMetadata] ARCHIVING CURRENT RUN`);
-                console.log(`[updateCommitMetadata] Commit SHA: ${commitSha}`);
-                console.log(`[updateCommitMetadata] Current run entity SHAs:`, updatedMetadata.currentRun.currentEntityShas);
-                console.log(`[updateCommitMetadata] Current run PIDs: analyzer=${updatedMetadata.currentRun.analyzerPid}, capture=${updatedMetadata.currentRun.capturePid}`);
-                console.log(`[updateCommitMetadata] Current run completed: analyses=${updatedMetadata.currentRun.analysesCompleted}, captures=${updatedMetadata.currentRun.capturesCompleted}`);
-                console.log(`[updateCommitMetadata] Historical runs before archiving: ${updatedMetadata.historicalRuns?.length || 0}`);
-                const runToArchive = {
-                    ...updatedMetadata.currentRun,
-                    archivedAt: new Date().toISOString(),
-                };
-                console.log(`[updateCommitMetadata] Run to archive:`, JSON.stringify(runToArchive, null, 2));
-                updatedMetadata.historicalRuns = [
-                    ...(updatedMetadata.historicalRuns || []),
-                    runToArchive,
-                ];
-                console.log(`[updateCommitMetadata] Historical runs after archiving: ${updatedMetadata.historicalRuns.length}`);
-                console.log(`[updateCommitMetadata] All historical runs:`, JSON.stringify(updatedMetadata.historicalRuns.map((r) => ({
-                    entityShas: r.currentEntityShas,
-                    archivedAt: r.archivedAt,
-                    completed: {
-                        analyses: r.analysesCompleted,
-                        captures: r.capturesCompleted,
-                    },
-                })), null, 2));
-                console.log(`[updateCommitMetadata] ========================================`);
-            }
-            // Allow callback to perform complex atomic updates
-            if (updateCallback) {
-                await updateCallback(updatedMetadata);
-            }
-            try {
-                const result = await trx
-                    .updateTable('commits')
-                    .set({ metadata: JSON.stringify(updatedMetadata) })
-                    .where('id', '=', commit.id)
-                    .returning(['id']) // Don't return all columns - files can be 1MB+
-                    .executeTakeFirst();
-                if (!result) {
-                    awsLog(`CodeYam Error: updateCommitMetadata(): Failed to update commit ${commitId}`);
+                // Allow callback to perform complex atomic updates
+                if (updateCallback) {
+                    await updateCallback(updatedMetadata);
+                }
+                try {
+                    const result = await trx
+                        .updateTable('commits')
+                        .set({ metadata: JSON.stringify(updatedMetadata) })
+                        .where('id', '=', commit.id)
+                        .returning(['id']) // Don't return all columns - files can be 1MB+
+                        .executeTakeFirst();
+                    if (!result) {
+                        awsLog(`CodeYam Error: updateCommitMetadata(): Failed to update commit ${commitId}`);
+                        return currentMetadata;
+                    }
+                    return updatedMetadata;
+                }
+                catch (error) {
+                    awsLog(`CodeYam Error: updateCommitMetadata(): Failed to update commit ${commitId}`, error);
                     return currentMetadata;
                 }
-                return updatedMetadata;
-            }
-            catch (error) {
-                awsLog(`CodeYam Error: updateCommitMetadata(): Failed to update commit ${commitId}`, error);
-                return currentMetadata;
+            });
+        }
+        catch (error) {
+            const isBusy = error instanceof Error && error.message.includes('database is locked');
+            if (isBusy && attempt < MAX_RETRIES) {
+                const delay = BASE_DELAY_MS * Math.pow(2, attempt);
+                await new Promise((resolve) => setTimeout(resolve, delay));
+                continue;
             }
-        });
-    }
-    catch (error) {
-        awsLog(`CodeYam Error: updateCommitMetadata(): Transaction failed for commit ${commitId}`, error);
-        return null;
+            awsLog(`CodeYam Error: updateCommitMetadata(): Transaction failed for commit ${commitId}${isBusy ? ` after ${attempt + 1} attempts` : ''}`, error);
+            return null;
+        }
     }
+    return null;
 }
 //# sourceMappingURL=updateCommitMetadata.js.map

package/analyzer-template/packages/github/dist/database/src/lib/updateCommitMetadata.js.map

@@ -1 +1 @@
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+{"version":3,"file":"updateCommitMetadata.js","sourceRoot":"","sources":["../../../../../database/src/lib/updateCommitMetadata.ts"],"names":[],"mappings":"AAKA,OAAO,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAC1C,OAAO,EAAE,MAAM,EAAE,MAAM,gBAAgB,CAAC;AACxC,OAAO,EAAE,SAAS,EAAc,MAAM,mBAAmB,CAAC;AAW1D,MAAM,CAAC,OAAO,CAAC,KAAK,UAAU,oBAAoB,CAAC,EACjD,QAAQ,EACR,SAAS,EACT,cAAc,EACd,eAAe,EACf,iBAAiB,EACjB,cAAc,GACW;IACzB,MAAM,WAAW,GAAG,CAAC,CAAC;IACtB,MAAM,aAAa,GAAG,GAAG,CAAC;IAE1B,KAAK,IAAI,OAAO,GAAG,CAAC,EAAE,OAAO,IAAI,WAAW,EAAE,OAAO,EAAE,EAAE,CAAC;QACxD,IAAI,CAAC;YACH,OAAO,MAAM,WAAW,EAAE;iBACvB,WAAW,EAAE;iBACb,OAAO,CAAC,KAAK,EAAE,GAAG,EAAE,EAAE;gBACrB,gFAAgF;gBAChF,iFAAiF;gBACjF,MAAM,MAAM,GAAG,MAAM,GAAG;qBACrB,UAAU,CAAC,SAAS,CAAC;qBACrB,MAAM,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,CAAC;qBAC1B,GAAG,CAAC,CAAC,CAAC,QAAQ,EAAE,CAAC,EAAO,EAAE,EAAE,CAAC,EAAE,CAAC,KAAK,CAAC,IAAI,EAAE,GAAG,EAAE,QAAQ,CAAC,CAAC;qBAC3D,GAAG,CAAC,CAAC,CAAC,SAAS,EAAE,CAAC,EAAO,EAAE,EAAE,CAAC,EAAE,CAAC,KAAK,CAAC,KAAK,EAAE,GAAG,EAAE,SAAS,CAAC,CAAC;qBAC9D,gBAAgB,EAAE,CAAC;gBAEtB,IAAI,CAAC,MAAM,EAAE,CAAC;oBACZ,MAAM,CACJ,iDAAiD,QAAQ,YAAY,CACtE,CAAC;oBACF,OAAO,IAAI,CAAC;gBACd,CAAC;gBAED,+EAA+E;gBAC/E,MAAM,eAAe,GAAmB,MAAM,CAAC,QAAQ,IAAI,EAAE,CAAC;gBAE9D,wEAAwE;gBACxE,IAAI,eAAe,EAAE,CAAC;oBACpB,eAAe,CAAC,aAAa,KAA7B,eAAe,CAAC,aAAa,GAAK,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE,EAAC;oBAE3D,IAAI,eAAe,CAAC,iBAAiB,KAAK,SAAS,EAAE,CAAC;wBACpD,OAAO,CAAC,GAAG,CACT,8DAA8D,CAC/D,CAAC;wBACF,OAAO,CAAC,GAAG,CAAC,sCAAsC,SAAS,EAAE,CAAC,CAAC;wBAC/D,OAAO,CAAC,GAAG,CACT,8CAA8C,EAC9C,eAAe,CAAC,UAAU,EAAE,iBAAiB,CAC9C,CAAC;wBACF,OAAO,CAAC,GAAG,CACT,yCAAyC,EACzC,eAAe,CAAC,iBAAiB,CAClC,CAAC;wBACF,OAAO,CAAC,GAAG,CACT,sCAAsC,EACtC,iBAAiB,CAClB,CAAC;oBACJ,CAAC;oBAED,cAAc,GAAG,SAAS,CAAC,cAAc,IAAI,EAAE,EAAE;wBAC/C,UAAU,EAAE,eAAe;qBAC5B,CAAC,CAAC;gBACL,CAAC;qBAAM,IAAI,CAAC,cAAc,IAAI,CAAC,cAAc,EAAE,CAAC;oBAC9C,OAAO,eAAe,CAAC,CAAC,oBAAoB;gBAC9C,CAAC;gBAED,yCAAyC;gBACzC,MAAM,eAAe,GAAmB,cAAc;oBACpD,CAAC,CAAC,SAAS,CAAC,eAAe,EAAE,cAAc,CAAC;oBAC5C,CAAC,CAAC,eAAe,CAAC;gBAEpB,mCAAmC;gBACnC,IAAI,iBAAiB,IAAI,eAAe,CAAC,UAAU,EAAE,CAAC;oBACpD,OAAO,CAAC,GAAG,CACT,iEAAiE,CAClE,CAAC;oBACF,OAAO,CAAC,GAAG,CAAC,8CAA8C,CAAC,CAAC;oBAC5D,OAAO,CAAC,GAAG,CAAC,sCAAsC,SAAS,EAAE,CAAC,CAAC;oBAC/D,OAAO,CAAC,GAAG,CACT,iDAAiD,EACjD,eAAe,CAAC,UAAU,CAAC,iBAAiB,CAC7C,CAAC;oBACF,OAAO,CAAC,GAAG,CACT,qDAAqD,eAAe,CAAC,UAAU,CAAC,WAAW,aAAa,eAAe,CAAC,UAAU,CAAC,UAAU,EAAE,CAChJ,CAAC;oBACF,OAAO,CAAC,GAAG,CACT,0DAA0D,eAAe,CAAC,UAAU,CAAC,iBAAiB,cAAc,eAAe,CAAC,UAAU,CAAC,iBAAiB,EAAE,CACnK,CAAC;oBACF,OAAO,CAAC,GAAG,CACT,4DAA4D,eAAe,CAAC,cAAc,EAAE,MAAM,IAAI,CAAC,EAAE,CAC1G,CAAC;oBAEF,MAAM,YAAY,GAAoB;wBACpC,GAAG,eAAe,CAAC,UAAU;wBAC7B,UAAU,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;qBACrC,CAAC;oBAEF,OAAO,CAAC,GAAG,CACT,wCAAwC,EACxC,IAAI,CAAC,SAAS,CAAC,YAAY,EAAE,IAAI,EAAE,CAAC,CAAC,CACtC,CAAC;oBAEF,eAAe,CAAC,cAAc,GAAG;wBAC/B,GAAG,CAAC,eAAe,CAAC,cAAc,IAAI,EAAE,CAAC;wBACzC,YAAY;qBACb,CAAC;oBAEF,OAAO,CAAC,GAAG,CACT,2DAA2D,eAAe,CAAC,cAAc,CAAC,MAAM,EAAE,CACnG,CAAC;oBACF,OAAO,CAAC,GAAG,CACT,6CAA6C,EAC7C,IAAI,CAAC,SAAS,CACZ,eAAe,CAAC,cAAc,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;wBACzC,UAAU,EAAE,CAAC,CAAC,iBAAiB;wBAC/B,UAAU,EAAE,CAAC,CAAC,UAAU;wBACxB,SAAS,EAAE;4BACT,QAAQ,EAAE,CAAC,CAAC,iBAAiB;4BAC7B,QAAQ,EAAE,CAAC,CAAC,iBAAiB;yBAC9B;qBACF,CAAC,CAAC,EACH,IAAI,EACJ,CAAC,CACF,CACF,CAAC;oBACF,OAAO,CAAC,GAAG,CACT,iEAAiE,CAClE,CAAC;gBACJ,CAAC;gBAED,mDAAmD;gBACnD,IAAI,cAAc,EAAE,CAAC;oBACnB,MAAM,cAAc,CAAC,eAAe,CAAC,CAAC;gBACxC,CAAC;gBAED,IAAI,CAAC;oBACH,MAAM,MAAM,GAAG,MAAM,GAAG;yBACrB,WAAW,CAAC,SAAS,CAAC;yBACtB,GAAG,CAAC,EAAE,QAAQ,EAAE,IAAI,CAAC,SAAS,CAAC,eAAe,CAAC,EAAE,CAAC;yBAClD,KAAK,CAAC,IAAI,EAAE,GAAG,EAAE,MAAM,CAAC,EAAE,CAAC;yBAC3B,SAAS,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,+CAA+C;yBACjE,gBAAgB,EAAE,CAAC;oBAEtB,IAAI,CAAC,MAAM,EAAE,CAAC;wBACZ,MAAM,CACJ,kEAAkE,QAAQ,EAAE,CAC7E,CAAC;wBACF,OAAO,eAAe,CAAC;oBACzB,CAAC;oBAED,OAAO,eAAe,CAAC;gBACzB,CAAC;gBAAC,OAAO,KAAK,EAAE,CAAC;oBACf,MAAM,CACJ,kEAAkE,QAAQ,EAAE,EAC5E,KAAK,CACN,CAAC;oBACF,OAAO,eAAe,CAAC;gBACzB,CAAC;YACH,CAAC,CAAC,CAAC;QACP,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,MAAM,MAAM,GACV,KAAK,YAAY,KAAK,IAAI,KAAK,CAAC,OAAO,CAAC,QAAQ,CAAC,oBAAoB,CAAC,CAAC;YAEzE,IAAI,MAAM,IAAI,OAAO,GAAG,WAAW,EAAE,CAAC;gBACpC,MAAM,KAAK,GAAG,aAAa,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,OAAO,CAAC,CAAC;gBACnD,MAAM,IAAI,OAAO,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,UAAU,CAAC,OAAO,EAAE,KAAK,CAAC,CAAC,CAAC;gBAC3D,SAAS;YACX,CAAC;YAED,MAAM,CACJ,wEAAwE,QAAQ,GAAG,MAAM,CAAC,CAAC,CAAC,UAAU,OAAO,GAAG,CAAC,WAAW,CAAC,CAAC,CAAC,EAAE,EAAE,EACnI,KAAK,CACN,CAAC;YACF,OAAO,IAAI,CAAC;QACd,CAAC;IACH,CAAC;IAED,OAAO,IAAI,CAAC;AACd,CAAC"}

package/analyzer-template/packages/github/dist/database/src/lib/updateFreshAnalysisStatus.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"updateFreshAnalysisStatus.d.ts","sourceRoot":"","sources":["../../../../../database/src/lib/updateFreshAnalysisStatus.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,cAAc,EAAE,gBAAgB,EAAE,MAAM,gBAAgB,CAAC;AAIlE;;;GAGG;AACH,wBAA8B,yBAAyB,CACrD,EAAE,EAAE,MAAM,EACV,EAAE,EAAE,CAAC,MAAM,EAAE,cAAc,EAAE,QAAQ,EAAE,gBAAgB,KAAK,IAAI,EAChE,MAAM,SAAY,GACjB,OAAO,CAAC,cAAc,GAAG,IAAI,CAAC,CAkDhC"}
+{"version":3,"file":"updateFreshAnalysisStatus.d.ts","sourceRoot":"","sources":["../../../../../database/src/lib/updateFreshAnalysisStatus.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,cAAc,EAAE,gBAAgB,EAAE,MAAM,gBAAgB,CAAC;AAIlE;;;GAGG;AACH,wBAA8B,yBAAyB,CACrD,EAAE,EAAE,MAAM,EACV,EAAE,EAAE,CAAC,MAAM,EAAE,cAAc,EAAE,QAAQ,EAAE,gBAAgB,KAAK,IAAI,EAChE,MAAM,SAAY,GACjB,OAAO,CAAC,cAAc,GAAG,IAAI,CAAC,CAkEhC"}

package/analyzer-template/packages/github/dist/database/src/lib/updateFreshAnalysisStatus.js

@@ -6,37 +6,48 @@ import dbToAnalysis from './dbToAnalysis';
  * The callback receives the current status and can modify it directly.
  */
 export default async function updateFreshAnalysisStatus(id, fn, source = 'capture') {
-    try {
-        return await getDatabase()
-            .transaction()
-            .execute(async (trx) => {
-            const dbAnalysis = await trx
-                .selectFrom('analyses')
-                .selectAll()
-                .where('id', '=', id)
-                .executeTakeFirst();
-            if (!dbAnalysis) {
-                awsLog(`CodeYam Error: updateFreshAnalysisStatus(): Analysis ${id} not found (source: ${source})`, null, { analysisId: id, source });
-                return null;
+    const MAX_RETRIES = 4;
+    const BASE_DELAY_MS = 250;
+    for (let attempt = 0; attempt <= MAX_RETRIES; attempt++) {
+        try {
+            return await getDatabase()
+                .transaction()
+                .execute(async (trx) => {
+                const dbAnalysis = await trx
+                    .selectFrom('analyses')
+                    .selectAll()
+                    .where('id', '=', id)
+                    .executeTakeFirst();
+                if (!dbAnalysis) {
+                    awsLog(`CodeYam Error: updateFreshAnalysisStatus(): Analysis ${id} not found (source: ${source})`, null, { analysisId: id, source });
+                    return null;
+                }
+                const analysis = dbToAnalysis(dbAnalysis);
+                fn(analysis.status, analysis);
+                const result = await trx
+                    .updateTable('analyses')
+                    .set({ status: JSON.stringify(analysis.status) })
+                    .where('id', '=', id)
+                    .returningAll()
+                    .executeTakeFirst();
+                if (!result) {
+                    awsLog(`CodeYam Error: updateFreshAnalysisStatus(): Failed to update analysis ${id} (source: ${source})`, null, { analysisId: id, source });
+                    return null;
+                }
+                return analysis.status;
+            });
+        }
+        catch (error) {
+            const isBusy = error instanceof Error && error.message.includes('database is locked');
+            if (isBusy && attempt < MAX_RETRIES) {
+                const delay = BASE_DELAY_MS * Math.pow(2, attempt);
+                await new Promise((resolve) => setTimeout(resolve, delay));
+                continue;
             }
-            const analysis = dbToAnalysis(dbAnalysis);
-            fn(analysis.status, analysis);
-            const result = await trx
-                .updateTable('analyses')
-                .set({ status: JSON.stringify(analysis.status) })
-                .where('id', '=', id)
-                .returningAll()
-                .executeTakeFirst();
-            if (!result) {
-                awsLog(`CodeYam Error: updateFreshAnalysisStatus(): Failed to update analysis ${id} (source: ${source})`, null, { analysisId: id, source });
-                return null;
-            }
-            return analysis.status;
-        });
-    }
-    catch (error) {
-        awsLog(`CodeYam Error: updateFreshAnalysisStatus(): Transaction failed for analysis ${id} (source: ${source})`, error, { analysisId: id, source });
-        return null;
+            awsLog(`CodeYam Error: updateFreshAnalysisStatus(): Transaction failed for analysis ${id} (source: ${source})${isBusy ? ` after ${attempt + 1} attempts` : ''}`, error, { analysisId: id, source });
+            return null;
+        }
     }
+    return null;
 }
 //# sourceMappingURL=updateFreshAnalysisStatus.js.map

package/analyzer-template/packages/github/dist/database/src/lib/updateFreshAnalysisStatus.js.map

@@ -1 +1 @@
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package/analyzer-template/packages/github/dist/database/src/lib/updateFreshAnalysisStatusWithScenarios.d.ts.map

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