@codeyam/codeyam-cli 0.1.0-staging.2a88920 → 0.1.0-staging.4684848

package/codeyam-cli/src/commands/init.js

@@ -2,17 +2,12 @@ import * as fs from 'fs/promises';
 import * as fsSync from 'fs';
 import * as path from 'path';
 import { execSync } from 'child_process';
+import chalk from 'chalk';
 import { error, header, info, ProgressReporter, success, withoutSpinner, } from "../utils/progress.js";
 import { ensureLocalBranch, ensureProject, getSqlitePath, testEnvironment, } from "../utils/database.js";
-import { createAnalyzer, getProjectPath } from "../utils/analyzer.js";
-import { ProjectAnalyzer } from "../../../packages/analyze/index.js";
-import prepareRepo from "../../../background/src/lib/virtualized/project/prepareRepo.js";
-import { createSqliteSchema, getSqliteDatabase, loadAnalyses, loadEntities, loadFiles, } from "../../../packages/database/index.js";
-import getFilesWithEntitiesFromRepo from "../../../background/src/lib/virtualized/project/getFilesWithEntitiesFromRepo.js";
-import createEntitiesAndSortFiles from "../../../background/src/lib/virtualized/project/createEntitiesAndSortFiles.js";
+import { createSqliteSchema, getSqliteDatabase, updateProjectMetadata, } from "../../../packages/database/index.js";
 import { findProjectRoot } from "../utils/project.js";
 import { setProjectRoot } from "../state.js";
-import { populateEntityMetadata } from "../utils/entityMetadata.js";
 import { installClaudeCodeSkills } from "../utils/install-skills.js";
 import { setupClaudeCodeSettings } from "../utils/setupClaudeCodeSettings.js";
 import { getUnapprovedPathsWithGitignore } from "../utils/defaultUnapprovedPaths.js";
@@ -42,14 +37,8 @@ const initCommand = {
         }
         setProjectRoot(projectRoot);
         // Stop any running CodeYam server before reinitializing
-        const { running, state, pids } = isServerRunning();
+        const { running } = isServerRunning();
         if (running) {
-            if (state) {
-                info(`Stopping running CodeYam server (PID: ${state.pid})...`);
-            }
-            else if (pids && pids.length > 0) {
-                info(`Stopping ${pids.length} running CodeYam server process${pids.length > 1 ? 'es' : ''} (PID${pids.length > 1 ? 's' : ''}: ${pids.join(', ')})...`);
-            }
             const stopped = killServer();
             if (stopped) {
                 success('CodeYam server stopped');
@@ -62,194 +51,98 @@ const initCommand = {
         const configPath = path.join(codeyamDir, 'config.json');
         const progress = new ProgressReporter();
         try {
-            // Create directory structure
-            progress.start('Creating .codeyam directory structure...');
+            // Create .codeyam dir + .gitignore entry
+            progress.start('Setting up project scaffolding...');
             await fs.mkdir(codeyamDir, { recursive: true });
-            await fs.mkdir(path.join(codeyamDir, 'results'), { recursive: true });
-            await fs.mkdir(path.join(codeyamDir, 'captures'), { recursive: true });
-            await fs.mkdir(path.join(codeyamDir, 'universal-mocks'), {
-                recursive: true,
-            });
-            progress.succeed('Created .codeyam directory structure');
-            // Add .codeyam to .gitignore to prevent committing secrets
-            progress.start('Updating .gitignore...');
             await ensureGitignoreEntry(projectRoot, '.codeyam');
-            progress.succeed('Updated .gitignore');
-            // Generate project slug
-            progress.start('Detecting project configuration...');
+            progress.succeed('Project scaffolding ready');
             const projectSlug = generateProjectSlug(projectRoot);
             const packageManager = detectPackageManager(projectRoot);
-            progress.succeed('Detected project configuration');
-            // Detect webapps in the project
-            progress.start('Detecting web applications...');
-            const detectedWebapps = detectWebApps(projectRoot);
-            if (detectedWebapps.length === 0) {
-                progress.fail('No web applications found');
-                error('CodeYam only supports web applications (Next.js, Remix, CRA)');
-                info('Make sure your project has a package.json with React dependencies');
-                return;
+            // Detect webapps (soft — doesn't block init for non-webapp projects)
+            let detectedWebapps = [];
+            try {
+                detectedWebapps = detectWebApps(projectRoot);
+            }
+            catch {
+                // Webapp detection is best-effort
             }
-            progress.succeed(`Found ${detectedWebapps.length} web application${detectedWebapps.length > 1 ? 's' : ''}`);
-            // Display detected webapps
-            for (const webapp of detectedWebapps) {
-                info(`  • ${webapp.path === '.' ? 'Root' : webapp.path}: ${webapp.framework}`);
+            if (detectedWebapps.length > 0) {
+                const webappSummary = detectedWebapps
+                    .map((w) => `${w.path === '.' ? 'Root' : w.path} (${w.framework})`)
+                    .join(', ');
+                info(`Found ${detectedWebapps.length} web application${detectedWebapps.length > 1 ? 's' : ''}: ${webappSummary}`);
             }
-            // ADMIN: commenting out for now as it's not working very well...
-            // // Detect files that use environment variables (only in webapp directories)
-            // progress.start('Scanning for files that use environment variables...');
-            // const webappPaths = detectedWebapps.map((w) => w.path);
-            // const detectedEnvVars = await detectEnvironmentVariables(
-            //   projectRoot,
-            //   webappPaths
-            // );
-            // if (detectedEnvVars.length > 0) {
-            //   progress.succeed(
-            //     `Found ${detectedEnvVars.length} file${detectedEnvVars.length > 1 ? 's' : ''} in webapp${webappPaths.length > 1 ? 's' : ''} using environment variables`
-            //   );
-            //   info(`  These files will need simple mocks during setup`);
-            // } else {
-            //   progress.succeed('No files in webapps using environment variables');
-            // }
-            // Create config.json
-            progress.start('Writing configuration file...');
+            // Config, database, environment validation, and project creation
+            progress.start('Configuring project...');
             const config = {
                 projectSlug,
                 packageManager,
                 webapps: detectedWebapps,
-                environmentVariables: [], //detectedEnvVars,
+                environmentVariables: [],
                 createdAt: new Date().toISOString(),
             };
             await fs.writeFile(configPath, JSON.stringify(config, null, 2));
-            progress.succeed('Created configuration file');
             const sqlitePath = getSqlitePath();
             if (!fsSync.existsSync(sqlitePath)) {
-                progress.start('Creating local database...');
                 const newDatabase = getSqliteDatabase(sqlitePath);
                 await createSqliteSchema(newDatabase);
-                progress.succeed('Local database ready');
             }
-            // Test database connection and create project
-            progress.start('Validating environment...');
             const connectionOk = await withoutSpinner(() => testEnvironment());
             if (!connectionOk) {
                 progress.fail('Environment validation failed');
                 return;
             }
-            progress.succeed('Environment validated');
-            // Create project in database
-            progress.start('Validating project and analyzer...');
             try {
-                const { project, created: projectCreated } = await ensureProject({
+                const { project } = await ensureProject({
                     slug: projectSlug,
                     packageManager,
                     unapprovedPaths: getUnapprovedPathsWithGitignore(projectRoot),
                     webapps: detectedWebapps,
                 });
-                progress.succeed(projectCreated ? 'Created new project' : 'Loaded existing project');
-                info(`Database ID: ${project?.id}`);
-                // Install Claude Code skills for guided setup
+                progress.succeed('Project configured');
+                // Skills, local branch, and auto-approval
                 progress.start('Installing Claude Code skills...');
-                const skillsResult = await installClaudeCodeSkills(projectRoot);
+                const skillsResult = await installClaudeCodeSkills(projectRoot, {
+                    mode: 'memory',
+                });
+                const { branch: localBranch } = await ensureLocalBranch(project);
+                config.branchId = localBranch.id;
+                await fs.writeFile(configPath, JSON.stringify(config, null, 2));
+                setupClaudeCodeSettings(projectRoot, { mode: 'memory' });
                 if (skillsResult.success) {
-                    progress.succeed(`Installed skills to ${skillsResult.skillsPath}/`);
+                    progress.succeed('Claude Code skills installed');
                 }
                 else {
                     progress.warn('Could not install skills');
-                    info(`Reason: ${skillsResult.error}`);
                 }
-                // Create _local branch for local development
-                progress.start('Creating local development branch...');
-                const { branch: localBranch, created: branchCreated } = await ensureLocalBranch(project);
-                if (branchCreated) {
-                    progress.succeed('Created _local branch');
+                // Disable simulations by default — enable via Labs page or `codeyam setup-simulations`
+                try {
+                    await updateProjectMetadata({
+                        projectSlug,
+                        metadataUpdate: { labs: { simulations: false } },
+                    });
                 }
-                // Create baseline entities in database
-                progress.start('Analyzing project and creating baseline entities...');
-                await createBaselineEntities(project, localBranch, projectRoot);
-                progress.succeed('Baseline entities created');
-                // Update config with branch ID for future reference
-                config.branchId = localBranch.id;
-                await fs.writeFile(configPath, JSON.stringify(config, null, 2));
-                // Warm analyzer cache for faster first analysis
-                progress.start('Setting up analyzer...');
-                await createAnalyzer(projectSlug);
-                progress.succeed('Analyzer ready for fast analysis');
-                // Cache project for faster subsequent runs
-                progress.start('Caching project files...');
-                await prepareRepo({
-                    absoluteProjectRootPath: getProjectPath(projectSlug),
-                    localProjectPath: projectRoot,
-                    silent: true,
-                });
-                progress.succeed('Project cache ready');
-                // // Install Claude Code skills for guided setup
-                // progress.start('Installing Claude Code skills...');
-                // const skillsResult = await installClaudeCodeSkills(projectRoot);
-                // if (skillsResult.success) {
-                //   progress.succeed(`Installed skills to ${skillsResult.skillsPath}/ (templates from ${skillsResult.templatesDir})`);
-                // } else {
-                //   progress.warn('Could not install skills');
-                //   info(`Reason: ${skillsResult.error}`);
-                // }
-                // Configure auto-approval for CodeYam commands and skills
-                progress.start('Configuring auto-approval permissions...');
-                const permissionsConfigured = setupClaudeCodeSettings(projectRoot);
-                if (permissionsConfigured) {
-                    progress.succeed('Auto-approval configured for CodeYam commands and skills');
-                }
-                else {
-                    progress.warn('Could not configure auto-approval');
-                    info('You may need to approve CodeYam commands manually');
+                catch {
+                    // Non-fatal — simulations will default to enabled in the UI if this fails
                 }
                 // AI Mode: Default to interactive (Claude Code)
-                // API key support exists but is not exposed in init flow yet
                 config.aiMode = 'interactive';
             }
             catch (err) {
-                progress.fail('Failed to create project and analyzer');
+                progress.fail('Failed to create project');
                 error(err.message);
                 return;
             }
+            const frameworkInfo = detectedWebapps.length > 0
+                ? `, ${detectedWebapps.map((w) => w.framework).join(', ')}`
+                : '';
             console.log();
-            success(`Initialized project: ${projectSlug}`);
-            info(`Package Manager: ${packageManager}`);
-            if (detectedWebapps.length === 1) {
-                info(`Framework: ${detectedWebapps[0].framework}`);
-                if (detectedWebapps[0].path !== '.') {
-                    info(`Webapp Path: ${detectedWebapps[0].path}`);
-                }
-            }
-            else {
-                info(`Web Applications: ${detectedWebapps.length}`);
-                for (const webapp of detectedWebapps) {
-                    info(`  • ${webapp.path === '.' ? 'Root' : webapp.path}: ${webapp.framework}`);
-                }
+            success(`✨ Initialized ${projectSlug} (${packageManager}${frameworkInfo})`);
+            if (!argv.autoInit) {
+                console.log();
+                console.log(chalk.bold('  Run "codeyam" to start the dashboard'));
+                console.log('  Run "codeyam --help" for all commands');
             }
-            console.log();
-            console.log('━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━');
-            console.log();
-            success('✨ CodeYam initialization complete!');
-            console.log();
-            console.log('📋 Next step: Complete setup with Claude Code');
-            console.log();
-            console.log('   1. Open this project in Claude Code');
-            console.log('   2. Say to Claude:');
-            console.log();
-            console.log('      "Claude, can you setup CodeYam?"');
-            console.log();
-            console.log('   Claude will guide you through:');
-            console.log('   • Detecting your project start command');
-            console.log('   • Finding dependencies that need mocking');
-            console.log('   • Configuring CodeYam to run your project');
-            console.log();
-            console.log('━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━');
-            console.log();
-            console.log('💡 Tips:');
-            console.log('   • Run "codeyam" to start the dashboard');
-            console.log('   • Run "codeyam --help" for all commands');
-            console.log('   • Run "codeyam stop" to stop the background server');
-            console.log('   • Edit mock files in .codeyam/universal-mocks/');
-            console.log();
         }
         catch (err) {
             progress.fail('Failed to initialize project');
@@ -288,107 +181,6 @@ function detectPackageManager(projectPath) {
         return 'npm';
     return 'npm'; // default fallback
 }
-/**
- * Create baseline entities for a project during initialization
- * This populates the database so that subsequent status/analyze commands
- * only show actual changes, not every file as "new"
- */
-async function createBaselineEntities(project, branch, projectRootPath) {
-    // Load project with files to populate project.files
-    if (!project.files) {
-        project.files = await loadFiles({ projectId: project.id });
-    }
-    // Load existing entities to preserve version tracking
-    const existingEntities = await loadEntities({
-        projectId: project.id,
-        branchId: branch.id,
-    });
-    // Create a map of existing entities by (filePath, name)
-    const existingEntityMap = new Map();
-    if (existingEntities) {
-        for (const entity of existingEntities) {
-            const key = `${entity.filePath}:${entity.name}`;
-            if (!existingEntityMap.has(key)) {
-                existingEntityMap.set(key, new Map());
-            }
-            existingEntityMap.get(key).set(entity.sha, entity);
-        }
-    }
-    // Load analyses for existing entities
-    const existingAnalysesMap = new Map();
-    if (existingEntities && existingEntities.length > 0) {
-        const analyses = await loadAnalyses({
-            entityShas: existingEntities.map((e) => e.sha),
-        });
-        if (analyses) {
-            for (const analysis of analyses) {
-                if (!existingAnalysesMap.has(analysis.entitySha)) {
-                    existingAnalysesMap.set(analysis.entitySha, []);
-                }
-                existingAnalysesMap.get(analysis.entitySha).push(analysis);
-            }
-        }
-    }
-    // Initialize ProjectAnalyzer and populate project.files with entities
-    const projectAnalyzer = await ProjectAnalyzer.from({
-        project,
-        dirPath: projectRootPath,
-    });
-    await getFilesWithEntitiesFromRepo({
-        project: project,
-        projectAnalyzer,
-        silent: true,
-    });
-    // Now create and persist all entities to database
-    const { entityMap } = await createEntitiesAndSortFiles({
-        project,
-        branch,
-        projectAnalyzer,
-    });
-    // Populate project.files with the created entities so populateEntityMetadata can process them
-    for (const file of project.files) {
-        file.entities = [];
-        if (entityMap[file.path]) {
-            // Deduplicate entities by SHA (aliases like 'default' can point to same entity)
-            const entitiesBySha = new Map();
-            Object.values(entityMap[file.path]).forEach((entity) => {
-                entitiesBySha.set(entity.sha, entity);
-            });
-            file.entities = Array.from(entitiesBySha.values());
-            // Preserve version tracking for each entity
-            for (const entity of file.entities) {
-                const key = `${entity.filePath}:${entity.name}`;
-                const existingVersions = existingEntityMap.get(key);
-                if (existingVersions) {
-                    // Check if this exact SHA already exists
-                    const exactMatch = existingVersions.get(entity.sha);
-                    if (exactMatch) {
-                        // Exact match - preserve all metadata and analyses
-                        entity.metadata = exactMatch.metadata;
-                        entity.analyses = existingAnalysesMap.get(exactMatch.sha) || [];
-                        continue;
-                    }
-                    // Different SHA - check if any previous version has analyses
-                    const versionWithAnalyses = Array.from(existingVersions.values()).find((v) => existingAnalysesMap.has(v.sha));
-                    if (versionWithAnalyses) {
-                        // Set previousVersionWithAnalyses to track where analyses came from
-                        entity.metadata = entity.metadata || {};
-                        entity.metadata.previousVersionWithAnalyses =
-                            versionWithAnalyses.sha;
-                        entity.metadata.previousCommittedSha =
-                            versionWithAnalyses.metadata?.isUncommitted === false
-                                ? versionWithAnalyses.sha
-                                : versionWithAnalyses.metadata?.previousCommittedSha;
-                        // Inherit analyses for display
-                        entity.analyses =
-                            existingAnalysesMap.get(versionWithAnalyses.sha) || [];
-                    }
-                }
-            }
-        }
-    }
-    await populateEntityMetadata(project.files, projectRootPath, projectAnalyzer);
-}
 /**
  * Ensure a given entry exists in the project's .gitignore file
  * Creates the .gitignore if it doesn't exist

package/codeyam-cli/src/commands/init.js.map

@@ -1 +1 @@
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package/codeyam-cli/src/commands/memory.js

@@ -2,7 +2,7 @@ import path from 'path';
 import fs from 'fs/promises';
 import { minimatch } from 'minimatch';
 import { error, header, info, success, warn } from "../utils/progress.js";
-import { loadAllRules, getRulesForPath, getAllStaleRules, updateTimestamp, } from "../utils/rules/index.js";
+import { loadAllRules, getRulesForPath, getAllStaleRules, loadRuleState, touchLastAuditedAt, } from "../utils/rules/index.js";
 /**
  * Find project root by looking for .claude/rules directory
  */
@@ -28,11 +28,11 @@ function showHelp() {
     console.log('Available commands:');
     console.log('  codeyam memory status     Show stale rules that need updating');
     console.log('  codeyam memory path <p>   Show rules matching a specific path');
-    console.log('  codeyam memory touch      Update timestamps on all stale rules');
+    console.log('  codeyam memory touch      Mark all stale rules as audited');
     console.log('  codeyam memory audit      List paths with most rule coverage\n');
-    info('Rules are stored in .claude/rules/ and have timestamps that indicate');
-    info('when they were last reviewed. A rule is "stale" when files it applies');
-    info('to have been modified more recently than the rule timestamp.');
+    info('Rules are stored in .claude/rules/ with audit dates in .claude/codeyam-rule-state.json');
+    info('that indicate when they were last reviewed. A rule is "stale" when files');
+    info('it applies to have been modified more recently than the rule was last audited.');
     info('');
     info('Run `codeyam` to launch the dashboard and manage your rules interactively.');
 }
@@ -47,7 +47,8 @@ async function handleStatus(projectRoot, rulesDir) {
         return;
     }
     info(`Checking ${rules.length} rule(s) for staleness...\n`);
-    const results = await getAllStaleRules(rules, projectRoot);
+    const ruleState = await loadRuleState(projectRoot);
+    const results = await getAllStaleRules(rules, projectRoot, ruleState);
     const staleRules = results.filter((r) => r.isStale);
     if (staleRules.length === 0) {
         success('All rules are up to date!');
@@ -57,10 +58,10 @@ async function handleStatus(projectRoot, rulesDir) {
     for (const result of staleRules) {
         console.log(`  ${result.rule.filePath}`);
         if (result.ruleTimestamp) {
-            console.log(`    Rule timestamp:  ${result.ruleTimestamp.toISOString()}`);
+            console.log(`    Last audited:    ${result.ruleTimestamp.toISOString()}`);
         }
         else {
-            console.log('    Rule timestamp:  (missing)');
+            console.log('    Last audited:    (never)');
         }
         if (result.newestFilePath && result.newestFileModified) {
             console.log(`    Newest file:     ${result.newestFilePath}`);
@@ -70,8 +71,7 @@ async function handleStatus(projectRoot, rulesDir) {
     }
     info('Please review these rules carefully with the recent changes made to the code in mind.');
     info('');
-    info('Update the timestamp in each rule after reviewing/updating the rule.');
-    info('Run "codeyam memory touch" to update timestamps on all stale rules.');
+    info('Run "codeyam memory touch" to mark all stale rules as audited.');
 }
 /**
  * Handle the 'path' subcommand - show rules matching a path
@@ -91,7 +91,6 @@ async function handlePath(rulesDir, targetPath) {
     success(`Found ${matchingRules.length} matching rule(s):\n`);
     for (const rule of matchingRules) {
         console.log(`  ${rule.filePath}`);
-        console.log(`    Category: ${rule.frontmatter.category || '(none)'}`);
         console.log(`    Patterns: ${rule.frontmatter.paths?.join(', ') || '(none)'}`);
         // Show first 150 chars of body as preview
         const preview = rule.body.trim().substring(0, 150).replace(/\n/g, ' ');
@@ -100,7 +99,7 @@ async function handlePath(rulesDir, targetPath) {
     }
 }
 /**
- * Handle the 'touch' subcommand - update timestamps on stale rules
+ * Handle the 'touch' subcommand - mark stale rules as audited
  */
 async function handleTouch(projectRoot, rulesDir) {
     header('Updating Stale Rules');
@@ -110,28 +109,20 @@ async function handleTouch(projectRoot, rulesDir) {
         return;
     }
     info(`Checking ${rules.length} rule(s) for staleness...\n`);
-    const results = await getAllStaleRules(rules, projectRoot);
+    const ruleState = await loadRuleState(projectRoot);
+    const results = await getAllStaleRules(rules, projectRoot, ruleState);
     const staleRules = results.filter((r) => r.isStale);
     if (staleRules.length === 0) {
         success('All rules are already up to date!');
         return;
     }
-    const now = new Date().toISOString();
-    let updated = 0;
+    const staleFilePaths = staleRules.map((r) => r.rule.filePath);
+    await touchLastAuditedAt(projectRoot, staleFilePaths);
     for (const result of staleRules) {
-        try {
-            const content = await fs.readFile(result.rule.absolutePath, 'utf-8');
-            const newContent = updateTimestamp(content, now);
-            await fs.writeFile(result.rule.absolutePath, newContent, 'utf-8');
-            updated++;
-            info(`Updated: ${result.rule.filePath}`);
-        }
-        catch (err) {
-            error(`Failed to update ${result.rule.filePath}: ${err}`);
-        }
+        info(`Updated: ${result.rule.filePath}`);
     }
     console.log();
-    success(`Updated ${updated} rule(s) to ${now}`);
+    success(`Updated ${staleFilePaths.length} rule(s) to ${new Date().toISOString()}`);
 }
 /**
  * Find all source files in a project

package/codeyam-cli/src/commands/memory.js.map

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package/codeyam-cli/src/commands/recapture.js

@@ -9,6 +9,7 @@ import getFrameworkForFile from "../../../packages/utils/src/lib/getFrameworkFor
 import { startBackgroundServer } from "../utils/backgroundServer.js";
 import { ensureFreshAnalyzer, resetProject } from "../utils/analyzer.js";
 import { getLogPath } from "../utils/sandbox.js";
+import { requireSimulations } from "../utils/requireSimulations.js";
 const recaptureCommand = {
     command: 'recapture <id>',
     describe: 'Re-run capture for a specific analysis or scenario (auto-detects ID type)',
@@ -29,6 +30,7 @@ const recaptureCommand = {
         },
     },
     handler: async (argv) => {
+        requireSimulations();
         header('CodeYam Recapture');
         const { id, width, captureOnly } = argv;
         let analysisId;