@codeyam/codeyam-cli 0.1.0-staging.25a2014 → 0.1.0-staging.26dc674

package/codeyam-cli/src/utils/analysisRunner.js.map

@@ -1 +1 @@
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package/codeyam-cli/src/utils/analyzer.js

@@ -76,6 +76,8 @@ export function analyzerExists(projectSlug) {
 export async function createAnalyzer(projectSlug) {
     const templatePath = getAnalyzerTemplatePath();
     const analyzerPath = getAnalyzerPath(projectSlug);
+    const startTime = Date.now();
+    const elapsed = () => `${((Date.now() - startTime) / 1000).toFixed(1)}s`;
     // Verify template exists
     if (!fsSync.existsSync(templatePath)) {
         throw new Error(`Analyzer template not found at ${templatePath}. Did the build process complete successfully?`);
@@ -83,19 +85,24 @@ export async function createAnalyzer(projectSlug) {
     // Create parent directory
     await fs.mkdir(path.dirname(analyzerPath), { recursive: true });
     // Copy template to analyzer location using rsync (handles symlinks properly)
+    console.log(`[createAnalyzer] Starting rsync: ${templatePath} → ${analyzerPath}`);
     await rsyncCopy({
         sourcePath: templatePath,
         destinationPath: analyzerPath,
         silent: true,
     });
+    console.log(`[createAnalyzer] rsync completed (${elapsed()})`);
     // Build the analyzer if dist/ doesn't exist (rsync from template won't include it)
     if (!fsSync.existsSync(path.join(analyzerPath, 'dist'))) {
+        console.log(`[createAnalyzer] dist/ not found, running npm install + build`);
         execSync('npm install --include=dev && npm run build', {
             cwd: analyzerPath,
             stdio: 'pipe',
             timeout: 300000,
         });
+        console.log(`[createAnalyzer] npm install + build completed (${elapsed()})`);
     }
+    console.log(`[createAnalyzer] Done (${elapsed()})`);
 }
 /**
  * Run the analyzer start process
@@ -235,6 +242,7 @@ export async function ensureFreshAnalyzer(projectSlug, progress) {
     if (!freshnessCheck.isFresh) {
         progress.update(`Updating analyzer (${freshnessCheck.reason})...`);
         await createAnalyzer(projectSlug);
+        progress.update('Analyzer updated');
     }
 }
 /**

package/codeyam-cli/src/utils/analyzer.js.map

@@ -1 +1 @@
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+{"version":3,"file":"analyzer.js","sourceRoot":"","sources":["../../../../src/utils/analyzer.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,aAAa,CAAC;AAClC,OAAO,KAAK,MAAM,MAAM,IAAI,CAAC;AAC7B,OAAO,KAAK,IAAI,MAAM,MAAM,CAAC;AAC7B,OAAO,EACL,uBAAuB,EACvB,kCAAkC,EAClC,qBAAqB,EACrB,gCAAgC,GACjC,MAAM,uDAAuD,CAAC;AAE/D,OAAO,EAAE,SAAS,EAAE,MAAM,uBAAuB,CAAC;AAClD,OAAO,EAAE,aAAa,EAAE,MAAM,KAAK,CAAC;AACpC,OAAO,EAAgB,QAAQ,EAAE,MAAM,eAAe,CAAC;AACvD,OAAO,EACL,eAAe,IAAI,sBAAsB,EACzC,cAAc,IAAI,qBAAqB,EACvC,YAAY,GACb,MAAM,WAAW,CAAC;AAEnB,MAAM,SAAS,GAAG,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;AAE/D;;GAEG;AAEH;;GAEG;AACH,SAAS,eAAe,CAAC,QAAgB;IACvC,IAAI,UAAU,GAAG,QAAQ,CAAC;IAE1B,OAAO,UAAU,KAAK,IAAI,CAAC,OAAO,CAAC,UAAU,CAAC,EAAE,CAAC;QAC/C,MAAM,eAAe,GAAG,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE,cAAc,CAAC,CAAC;QAC9D,IAAI,MAAM,CAAC,UAAU,CAAC,eAAe,CAAC,EAAE,CAAC;YACvC,IAAI,CAAC;gBACH,MAAM,WAAW,GAAG,IAAI,CAAC,KAAK,CAC5B,MAAM,CAAC,YAAY,CAAC,eAAe,EAAE,MAAM,CAAC,CAC7C,CAAC;gBACF,IAAI,WAAW,CAAC,IAAI,KAAK,sBAAsB,EAAE,CAAC;oBAChD,OAAO,UAAU,CAAC;gBACpB,CAAC;YACH,CAAC;YAAC,MAAM,CAAC;gBACP,kDAAkD;YACpD,CAAC;QACH,CAAC;QACD,UAAU,GAAG,IAAI,CAAC,OAAO,CAAC,UAAU,CAAC,CAAC;IACxC,CAAC;IAED,MAAM,IAAI,KAAK,CAAC,kDAAkD,CAAC,CAAC;AACtE,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,uBAAuB;IACrC,kEAAkE;IAClE,MAAM,WAAW,GAAG,eAAe,CAAC,SAAS,CAAC,CAAC;IAC/C,kDAAkD;IAClD,OAAO,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,mBAAmB,CAAC,CAAC;AACrD,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,eAAe,CAAC,WAAmB;IACjD,OAAO,sBAAsB,CAAC,WAAW,CAAC,CAAC;AAC7C,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,cAAc,CAAC,WAAmB;IAChD,OAAO,qBAAqB,CAAC,WAAW,CAAC,CAAC;AAC5C,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,mBAAmB;IACjC,MAAM,YAAY,GAAG,uBAAuB,EAAE,CAAC;IAC/C,OAAO,MAAM,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,YAAY,EAAE,YAAY,CAAC,CAAC,CAAC;AAClE,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,cAAc,CAAC,WAAmB;IAChD,MAAM,YAAY,GAAG,eAAe,CAAC,WAAW,CAAC,CAAC;IAClD,OAAO,MAAM,CAAC,UAAU,CAAC,YAAY,CAAC,CAAC;AACzC,CAAC;AAED;;;GAGG;AACH,MAAM,CAAC,KAAK,UAAU,cAAc,CAAC,WAAmB;IACtD,MAAM,YAAY,GAAG,uBAAuB,EAAE,CAAC;IAC/C,MAAM,YAAY,GAAG,eAAe,CAAC,WAAW,CAAC,CAAC;IAClD,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;IAE7B,MAAM,OAAO,GAAG,GAAG,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,GAAG,EAAE,GAAG,SAAS,CAAC,GAAG,IAAI,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,GAAG,CAAC;IAEzE,yBAAyB;IACzB,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,YAAY,CAAC,EAAE,CAAC;QACrC,MAAM,IAAI,KAAK,CACb,kCAAkC,YAAY,gDAAgD,CAC/F,CAAC;IACJ,CAAC;IAED,0BAA0B;IAC1B,MAAM,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,YAAY,CAAC,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IAEhE,6EAA6E;IAC7E,OAAO,CAAC,GAAG,CACT,oCAAoC,YAAY,MAAM,YAAY,EAAE,CACrE,CAAC;IACF,MAAM,SAAS,CAAC;QACd,UAAU,EAAE,YAAY;QACxB,eAAe,EAAE,YAAY;QAC7B,MAAM,EAAE,IAAI;KACb,CAAC,CAAC;IACH,OAAO,CAAC,GAAG,CAAC,qCAAqC,OAAO,EAAE,GAAG,CAAC,CAAC;IAE/D,mFAAmF;IACnF,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,YAAY,EAAE,MAAM,CAAC,CAAC,EAAE,CAAC;QACxD,OAAO,CAAC,GAAG,CACT,+DAA+D,CAChE,CAAC;QACF,QAAQ,CAAC,4CAA4C,EAAE;YACrD,GAAG,EAAE,YAAY;YACjB,KAAK,EAAE,MAAM;YACb,OAAO,EAAE,MAAO;SACjB,CAAC,CAAC;QACH,OAAO,CAAC,GAAG,CACT,mDAAmD,OAAO,EAAE,GAAG,CAChE,CAAC;IACJ,CAAC;IAED,OAAO,CAAC,GAAG,CAAC,0BAA0B,OAAO,EAAE,GAAG,CAAC,CAAC;AACtD,CAAC;AAED;;GAEG;AACH,MAAM,CAAC,KAAK,UAAU,WAAW,CAC/B,WAAmB,EACnB,WAAmC,EACnC,SAAoB;IAEpB,MAAM,YAAY,GAAG,eAAe,CAAC,WAAW,CAAC,CAAC;IAElD,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,YAAY,CAAC,EAAE,CAAC;QACrC,MAAM,IAAI,KAAK,CACb,kCAAkC,WAAW,mBAAmB,CACjE,CAAC;IACJ,CAAC;IAED,gCAAgC;IAChC,OAAO,MAAM,qBAAqB,CAAC,YAAY,EAAE,WAAW,EAAE,SAAS,CAAC,CAAC;AAC3E,CAAC;AAED;;GAEG;AACH,MAAM,CAAC,KAAK,UAAU,UAAU,CAAC,WAAmB;IAClD,MAAM,YAAY,GAAG,eAAe,CAAC,WAAW,CAAC,CAAC;IAElD,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,YAAY,CAAC,EAAE,CAAC;QACrC,MAAM,IAAI,KAAK,CACb,kCAAkC,WAAW,mBAAmB,CACjE,CAAC;IACJ,CAAC;IAED,OAAO,MAAM,uBAAuB,CAAC,WAAW,EAAE,YAAY,CAAC,CAAC;AAClE,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,sBAAsB,CACpC,WAAmB,EACnB,WAAmC,EACnC,SAAoB,EACpB,uBAAoD;IAEpD,MAAM,YAAY,GAAG,eAAe,CAAC,WAAW,CAAC,CAAC;IAElD,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,YAAY,CAAC,EAAE,CAAC;QACrC,MAAM,IAAI,KAAK,CACb,yBAAyB,YAAY,sHAAsH,CAC5J,CAAC;IACJ,CAAC;IAED,MAAM,QAAQ,GAAG,uBAAuB;QACtC,CAAC,CAAC,CAAC,IAAY,EAAE,EAAE;YACf,uBAAuB,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;QACvC,CAAC;QACH,CAAC,CAAC,SAAS,CAAC;IAEd,OAAO,gCAAgC,CAAC;QACtC,uBAAuB,EAAE,YAAY;QACrC,QAAQ,EAAE,WAAW;QACrB,SAAS,EAAE,SAAS;QACpB,aAAa,EAAE;YACb,eAAe,EAAE,KAAK;YACtB,YAAY,EAAE,IAAI;YAClB,cAAc,EAAE,QAAQ;YACxB,eAAe,EAAE,KAAK;YACtB,YAAY,EAAE,IAAI;YAClB,cAAc,EAAE,QAAQ;SACzB;KACF,CAAC,CAAC;AACL,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,qBAAqB,CACnC,WAAmB,EACnB,uBAAoD;IAKpD,MAAM,YAAY,GAAG,eAAe,CAAC,WAAW,CAAC,CAAC;IAElD,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,YAAY,CAAC,EAAE,CAAC;QACrC,MAAM,IAAI,KAAK,CACb,kCAAkC,WAAW,mBAAmB,CACjE,CAAC;IACJ,CAAC;IAED,MAAM,QAAQ,GAAG,uBAAuB;QACtC,CAAC,CAAC,CAAC,IAAY,EAAE,EAAE;YACf,uBAAuB,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;QACvC,CAAC;QACH,CAAC,CAAC,SAAS,CAAC;IAEd,OAAO,kCAAkC,CAAC;QACxC,WAAW,EAAE,WAAW;QACxB,uBAAuB,EAAE,YAAY;QACrC,aAAa,EAAE;YACb,eAAe,EAAE,KAAK;YACtB,YAAY,EAAE,IAAI;YAClB,cAAc,EAAE,QAAQ;YACxB,eAAe,EAAE,KAAK;YACtB,YAAY,EAAE,IAAI;YAClB,cAAc,EAAE,QAAQ;SACzB;KACF,CAAC,CAAC;AACL,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,eAAe,CAAC,WA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package/codeyam-cli/src/utils/editorAudit.js

@@ -4,6 +4,7 @@
  * Cross-references glossary entries against registered scenarios (components)
  * and test files (functions) to detect gaps Claude may have missed.
  */
+import { isIsolationUrl, } from "./entityChangeStatus.js";
 // ─── Logic ───────────────────────────────────────────────────────────
 const COMPONENT_RETURN_PATTERNS = ['JSX', 'React', 'Element', 'ReactNode'];
 /**
@@ -39,14 +40,25 @@ export function classifyGlossaryEntries(entries) {
  * @param scenarioCounts - Map of component_name → number of registered scenarios
  * @param testFileExistence - Map of testFile path → whether the file exists on disk
  */
-export function computeAudit({ components, functions, scenarioCounts, testFileExistence, testResults, clientErrors, }) {
+export function computeAudit({ components, functions, scenarioCounts, testFileExistence, testResults, clientErrors, totalScenarioCounts, entityChangeStatus, }) {
     const componentResults = components.map((c) => {
         const count = scenarioCounts[c.name] || 0;
+        const totalCount = totalScenarioCounts?.[c.name] || 0;
+        const changeStatus = entityChangeStatus?.[c.name];
         const errors = clientErrors?.[c.name];
         const hasErrors = count > 0 && errors && errors.length > 0;
         let status;
         if (count === 0) {
-            status = 'missing';
+            // Entities with existing scenarios from prior sessions don't need
+            // new scenarios — they need recapture. This applies to both "edited"
+            // and "impacted" entities: an edited page may not have been re-registered
+            // this session, and an impacted page's dependency changed.
+            if (changeStatus && totalCount > 0) {
+                status = 'needs_recapture';
+            }
+            else {
+                status = 'missing';
+            }
         }
         else if (hasErrors) {
             status = 'has_errors';
@@ -54,12 +66,27 @@ export function computeAudit({ components, functions, scenarioCounts, testFileEx
         else {
             status = 'ok';
         }
+        // Generate actionable hint for missing components
+        let hint;
+        if (status === 'missing') {
+            const fileName = c.filePath.split('/').pop() || '';
+            if (fileName === 'layout.tsx' || fileName === 'layout.ts') {
+                hint = `This is a layout file — register an app-level scenario with pageFilePath instead of componentName: codeyam editor register '{"name":"${c.name} - Default","pageFilePath":"${c.filePath}","url":"/<route>","dimensions":["Desktop"]}'`;
+            }
+            else if (fileName === 'page.tsx' || fileName === 'page.ts') {
+                hint = `This is a page file — register an app-level scenario with pageFilePath: codeyam editor register '{"name":"${c.name} - Default","pageFilePath":"${c.filePath}","url":"/<route>","dimensions":["Desktop"]}'`;
+            }
+            else {
+                hint = `Register a component scenario via an isolation route: codeyam editor isolate ${c.name} then codeyam editor register '{"name":"${c.name} - Default","componentName":"${c.name}","url":"/isolated-components/${c.name}?s=Default","dimensions":["Desktop"]}'`;
+            }
+        }
         return {
             name: c.name,
             filePath: c.filePath,
-            scenarioCount: count,
+            scenarioCount: status === 'needs_recapture' ? totalCount : count,
             status,
             ...(hasErrors ? { clientErrors: errors } : {}),
+            ...(hint ? { hint } : {}),
         };
     });
     const functionResults = functions.map((f) => {
@@ -67,12 +94,17 @@ export function computeAudit({ components, functions, scenarioCounts, testFileEx
             ? (testFileExistence[f.testFile] ?? false)
             : false;
         if (!exists) {
+            // Suggest conventional test file path when testFile isn't in the glossary
+            const suggestedTestFile = !f.testFile
+                ? f.filePath.replace(/\.tsx?$/, '.test.ts')
+                : undefined;
             return {
                 name: f.name,
                 filePath: f.filePath,
                 testFile: f.testFile,
                 testFileExists: false,
                 status: 'missing',
+                ...(suggestedTestFile ? { suggestedTestFile } : {}),
             };
         }
         // If we have test results for this file, use them for deeper status
@@ -111,9 +143,10 @@ export function computeAudit({ components, functions, scenarioCounts, testFileEx
             ...(tr.errorMessage ? { errorMessage: tr.errorMessage } : {}),
         };
     });
-    const componentsOk = componentResults.filter((c) => c.status === 'ok').length;
+    const componentsOk = componentResults.filter((c) => c.status === 'ok' || c.status === 'needs_recapture').length;
     const componentsWithErrors = componentResults.filter((c) => c.status === 'has_errors').length;
     const componentsMissing = componentResults.filter((c) => c.status === 'missing').length;
+    const componentsNeedingRecapture = componentResults.filter((c) => c.status === 'needs_recapture').length;
     const functionsOk = functionResults.filter((f) => f.status === 'ok').length;
     const functionsFailing = functionResults.filter((f) => f.status === 'failing').length;
     const functionsRunnerError = functionResults.filter((f) => f.status === 'runner_error').length;
@@ -127,6 +160,7 @@ export function computeAudit({ components, functions, scenarioCounts, testFileEx
             componentsOk,
             componentsMissing,
             componentsWithErrors,
+            componentsNeedingRecapture,
             totalFunctions: functionResults.length,
             functionsOk,
             functionsMissing,
@@ -143,21 +177,62 @@ export function computeAudit({ components, functions, scenarioCounts, testFileEx
     };
 }
 /**
- * Returns true when the audit failure can be auto-fixed by running
- * analyze-imports: incomplete entities are the only issue AND we haven't
- * already tried (to prevent infinite retry loops when analysis has errors).
+ * Returns true when the audit failure can be auto-fixed inline.
+ *
+ * Always returns false — full analyze-imports takes minutes on large projects
+ * and must never run as part of the audit. The audit only does lightweight
+ * entity SHA backfill. Users should run `codeyam editor analyze-imports`
+ * separately if incomplete entities persist.
  */
-export function isAutoRemediable(summary, alreadyAttempted) {
-    if (alreadyAttempted)
-        return false;
-    if (!summary.incompleteEntities || summary.incompleteEntities === 0)
-        return false;
-    return isOnlyIncompleteEntities(summary);
+export function isAutoRemediable(_summary, _alreadyAttempted) {
+    return false;
+}
+/**
+ * Generate clear, actionable guidance for an incomplete entity.
+ *
+ * Tells Claude exactly what's wrong, whether it's pre-existing, and
+ * the exact command to fix it — no guessing required.
+ */
+export function formatIncompleteEntityGuidance(entity) {
+    const parts = [];
+    if (entity.preExisting) {
+        parts.push(`${entity.name}: ${entity.scenarioCount} scenario(s) without import graph (pre-existing issue, not from this session).`);
+        parts.push(`This is non-blocking — the entity had scenarios before this session but analyze-imports was never run for it.`);
+    }
+    else {
+        parts.push(`${entity.name}: ${entity.scenarioCount} scenario(s) without import graph — analyze-imports has not been run for this entity.`);
+        parts.push(`The entity has scenarios registered but its import graph is not built, so the editor cannot track its dependencies.`);
+    }
+    parts.push(`Fix: Run \`codeyam editor analyze-imports\` to build the import graph for all entities.`);
+    return parts.join(' ');
+}
+/**
+ * Resolve incomplete entity SHAs to their source file paths.
+ *
+ * Used by the audit to run targeted analysis on just the files that need it,
+ * instead of scanning all 117+ project files. Returns deduplicated file paths.
+ */
+export async function getIncompleteEntityFilePaths(db, incompleteEntities) {
+    if (incompleteEntities.length === 0)
+        return [];
+    const shas = incompleteEntities.map((e) => e.entitySha);
+    const rows = await db
+        .selectFrom('entities')
+        .select('file_path')
+        .where('sha', 'in', shas)
+        .execute();
+    const paths = new Set();
+    for (const row of rows) {
+        if (row.file_path)
+            paths.add(row.file_path);
+    }
+    return [...paths];
 }
 /**
- * Returns true when incompleteEntities is the ONLY audit failure —
- * all other failure counts are zero. Used to decide whether auto-running
- * analyze-imports can fix the audit without manual intervention.
+ * Returns true when the only audit failures are auto-fixable entity issues
+ * (incompleteEntities and/or unassociatedScenarios) — all other failure
+ * counts are zero. Used to decide whether auto-running analyze-imports +
+ * entity SHA sync can fix the audit without manual intervention.
  */
 export function isOnlyIncompleteEntities(summary) {
     return ((summary.componentsMissing ?? 0) === 0 &&
@@ -169,6 +244,49 @@ export function isOnlyIncompleteEntities(summary) {
         (summary.miscategorizedScenarios ?? 0) === 0 &&
         (summary.scenariosNeedingRecapture ?? 0) === 0);
 }
+/**
+ * Returns true when the only audit failures are incomplete entities that ALL
+ * existed before the current session. Used by the step gate to avoid blocking
+ * progress on pre-existing issues the user didn't cause.
+ *
+ * Requires both the summary (to confirm no other failure types) and the
+ * incompleteEntities array (to verify every entry is pre-existing).
+ */
+export function isOnlyPreExistingIncomplete(summary, incompleteEntities) {
+    // Must have at least one incomplete entity to be relevant
+    if (!incompleteEntities || incompleteEntities.length === 0)
+        return false;
+    // All other failure types must be zero
+    if (!isOnlyIncompleteEntities(summary))
+        return false;
+    // Every incomplete entity must be pre-existing
+    return incompleteEntities.every((e) => e.preExisting);
+}
+/**
+ * Filter a list of file paths to only those that need analysis.
+ *
+ * A file is excluded if ANY entity at that file path has an analysis
+ * record (direct or inherited from a sibling version with the same
+ * name+filePath). Everything else passes through.
+ *
+ * Used by handleAnalyzeImports to avoid re-analyzing ~120 files when
+ * only a few need it.
+ */
+export async function filterToIncompleteFilePaths(db, _projectId, allFilePaths) {
+    if (allFilePaths.length === 0)
+        return [];
+    // Single query: find all file paths that have at least one entity
+    // with an analysis record. These are already analyzed and can be skipped.
+    const analyzedRows = await db
+        .selectFrom('entities')
+        .innerJoin('analyses', 'analyses.entity_sha', 'entities.sha')
+        .select('entities.file_path')
+        .where('entities.file_path', 'in', allFilePaths)
+        .groupBy('entities.file_path')
+        .execute();
+    const analyzedFilePaths = new Set(analyzedRows.map((r) => r.file_path));
+    return allFilePaths.filter((fp) => !analyzedFilePaths.has(fp));
+}
 /**
  * Ensures the two audit filters — glossary scoping and scenario-count scoping —
  * are consistent. When entityChangeStatus is empty/undefined (meaning the glossary
@@ -215,22 +333,15 @@ export function filterGlossaryByChangeStatus(entries, entityChangeStatus) {
  */
 export async function queryIncompleteEntities(db, projectId, featureStartedAt) {
     // Step 1: Get distinct entity SHAs from scenarios (with counts)
-    let scenarioQuery = db
+    // No time filter — we check ALL scenarios to catch entities whose
+    // scenario SHAs were updated mid-session without touching updated_at.
+    const scenarioQuery = db
         .selectFrom('editor_scenarios')
         .select(['entity_sha'])
         .select(db.fn.count('id').as('count'))
         .where('project_id', '=', projectId)
         .where('entity_sha', 'is not', null)
         .groupBy('entity_sha');
-    if (featureStartedAt) {
-        const sqliteTimestamp = featureStartedAt
-            .replace('T', ' ')
-            .replace(/\.\d{3}Z$/, '');
-        scenarioQuery = scenarioQuery.where((eb) => eb.or([
-            eb('created_at', '>=', sqliteTimestamp),
-            eb('updated_at', '>=', sqliteTimestamp),
-        ]));
-    }
     const scenarioRows = await scenarioQuery.execute();
     if (scenarioRows.length === 0)
         return [];
@@ -259,24 +370,41 @@ export async function queryIncompleteEntities(db, projectId, featureStartedAt) {
     // A new entity version (created by the file watcher) may not have direct
     // analyses, but an older version (same name+filePath) might. This matches
     // getAllEntities() behavior which inherits analyses across versions.
-    const entityNames = [
-        ...new Set(entityRows.map((r) => r.name).filter(Boolean)),
+    // IMPORTANT: Must match by name+filePath, not name alone. When a component
+    // is extracted to a new file, the old version (different filePath) may have
+    // analyses but getAllEntities() won't inherit across different file paths.
+    const entityFilePathMap = new Map(entityRows.map((r) => [r.sha, r.file_path]));
+    const entityKeys = [
+        ...new Set(entityRows
+            .map((r) => `${r.name}::${r.file_path}`)
+            .filter((k) => !k.startsWith('::') && !k.endsWith('::'))),
     ];
-    let namesWithInheritedAnalyses = new Set();
-    if (entityNames.length > 0) {
+    let keysWithInheritedAnalyses = new Set();
+    if (entityKeys.length > 0) {
+        // We need to find entities that share name+filePath AND have analyses.
+        // Since Kysely doesn't support WHERE (name || '::' || file_path) IN (...),
+        // query by the entity names and filter by filePath in JS.
+        const entityNames = [
+            ...new Set(entityRows.map((r) => r.name).filter(Boolean)),
+        ];
         const siblingRows = await db
             .selectFrom('entities')
             .innerJoin('analyses', 'analyses.entity_sha', 'entities.sha')
-            .select('entities.name')
+            .select(['entities.name', 'entities.file_path'])
             .where('entities.name', 'in', entityNames)
-            .groupBy('entities.name')
+            .groupBy(['entities.name', 'entities.file_path'])
             .execute();
-        namesWithInheritedAnalyses = new Set(siblingRows.map((r) => r.name));
+        keysWithInheritedAnalyses = new Set(siblingRows.map((r) => `${r.name}::${r.file_path}`));
     }
-    // Filter out entities that have inherited analyses
+    // Filter out entities that have inherited analyses (same name+filePath)
     const trulyIncompleteShas = incompleteShas.filter((r) => {
-        const name = entityNameMap.get(r.entity_sha);
-        return !name || !namesWithInheritedAnalyses.has(name);
+        const sha = r.entity_sha;
+        const name = entityNameMap.get(sha);
+        const filePath = entityFilePathMap.get(sha);
+        if (!name)
+            return false; // No entity record (phantom SHA) — skip, not fixable by analysis
+        const key = `${name}::${filePath}`;
+        return !keysWithInheritedAnalyses.has(key);
     });
     if (trulyIncompleteShas.length === 0)
         return [];
@@ -294,12 +422,34 @@ export async function queryIncompleteEntities(db, projectId, featureStartedAt) {
         r.entity_sha,
         r.component_name,
     ]));
+    // Step 6: Determine preExisting flag — if featureStartedAt is provided,
+    // check which entity SHAs have at least one scenario created/updated
+    // during the session. Those without any are pre-existing issues.
+    let sessionShas = new Set();
+    if (featureStartedAt) {
+        const sqliteTimestamp = featureStartedAt
+            .replace('T', ' ')
+            .replace(/\.\d{3}Z$/, '');
+        const sessionRows = await db
+            .selectFrom('editor_scenarios')
+            .select('entity_sha')
+            .where('project_id', '=', projectId)
+            .where('entity_sha', 'in', trulyIncompleteShalist)
+            .where((eb) => eb.or([
+            eb('created_at', '>=', sqliteTimestamp),
+            eb('updated_at', '>=', sqliteTimestamp),
+        ]))
+            .groupBy('entity_sha')
+            .execute();
+        sessionShas = new Set(sessionRows.map((r) => r.entity_sha));
+    }
     return trulyIncompleteShas.map((r) => {
         const sha = r.entity_sha;
         return {
             entitySha: sha,
             name: entityNameMap.get(sha) || scenarioNameMap.get(sha) || 'Unknown',
             scenarioCount: Number(r.count),
+            preExisting: featureStartedAt ? !sessionShas.has(sha) : false,
         };
     });
 }
@@ -331,7 +481,7 @@ export async function queryMiscategorizedScenarios(db, projectId, featureStarted
     }
     const rows = await query.execute();
     // Filter to only rows where URL is NOT an isolation route
-    const miscategorized = rows.filter((r) => r.url && !r.url.includes('/isolated-components'));
+    const miscategorized = rows.filter((r) => r.url && !isIsolationUrl(r.url));
     if (miscategorized.length === 0)
         return [];
     // Group by (component_name, url)
@@ -420,6 +570,96 @@ export async function queryPageScenarioCounts(db, projectId, featureStartedAt) {
     }
     return counts;
 }
+// ─── Unassociated Scenarios ───────────────────────────────────────────
+/**
+ * Find scenarios with NULL entity_sha that have a file path
+ * (component_path or page_file_path). These scenarios were registered
+ * before entity records existed in the DB — typically because a subagent
+ * registered scenarios without running analyze-imports first.
+ *
+ * Fix: run `codeyam editor analyze-imports` to create entity records,
+ * then entity_sha backfill will associate them automatically.
+ *
+ * Optionally scoped to the current feature session via featureStartedAt.
+ */
+export async function queryUnassociatedScenarios(db, projectId, featureStartedAt) {
+    let query = db
+        .selectFrom('editor_scenarios')
+        .select(['component_name', 'component_path', 'page_file_path', 'name'])
+        .where('project_id', '=', projectId)
+        .where('entity_sha', 'is', null)
+        .where((eb) => eb.or([
+        eb('component_path', 'is not', null),
+        eb('page_file_path', 'is not', null),
+    ]));
+    if (featureStartedAt) {
+        const sqliteTimestamp = featureStartedAt
+            .replace('T', ' ')
+            .replace(/\.\d{3}Z$/, '');
+        query = query.where((eb) => eb.or([
+            eb('created_at', '>=', sqliteTimestamp),
+            eb('updated_at', '>=', sqliteTimestamp),
+        ]));
+    }
+    const rows = await query.execute();
+    if (rows.length === 0)
+        return [];
+    // Group by file path (component_path or page_file_path)
+    const groups = new Map();
+    for (const row of rows) {
+        const r = row;
+        const filePath = r.component_path || r.page_file_path;
+        const existing = groups.get(filePath);
+        if (existing) {
+            existing.scenarioNames.push(r.name);
+        }
+        else {
+            // Derive a display name: use component_name if available,
+            // otherwise extract from file path (e.g., "src/lib/LibraryApp.tsx" → "LibraryApp")
+            const displayName = r.component_name ||
+                filePath
+                    .split('/')
+                    .pop()
+                    ?.replace(/\.\w+$/, '') ||
+                filePath;
+            groups.set(filePath, {
+                name: displayName,
+                filePath,
+                scenarioNames: [r.name],
+            });
+        }
+    }
+    return [...groups.values()].map((g) => ({
+        name: g.name,
+        filePath: g.filePath,
+        scenarioCount: g.scenarioNames.length,
+        scenarioNames: g.scenarioNames,
+    }));
+}
+// ─── Duplicate Name Detection ─────────────────────────────────────────
+/**
+ * Detect glossary entries that share the same `name`.
+ *
+ * Returns a Map of name → entries[] for names that appear more than once.
+ * Single-occurrence names are excluded. Used to warn Claude that ambiguous
+ * names will make audit output confusing (e.g., three entries all named "Page").
+ */
+export function detectDuplicateNames(entries) {
+    const groups = new Map();
+    for (const entry of entries) {
+        const existing = groups.get(entry.name);
+        if (existing)
+            existing.push(entry);
+        else
+            groups.set(entry.name, [entry]);
+    }
+    // Only return groups with duplicates
+    for (const [name, group] of groups) {
+        if (group.length <= 1)
+            groups.delete(name);
+    }
+    return groups;
+}
 /**
  * Identify scenarios that need recapture because their entity (or an entity
  * in their dependency tree) has changed.