@codemcp/ade 0.2.0 → 0.2.2

package/.changeset/README.md

@@ -0,0 +1,8 @@
+# Changesets
+
+Hello and welcome! This folder has been automatically generated by `@changesets/cli`, a build tool that works
+with multi-package repos, or single-package repos to help you version and publish your code. You can
+find the full documentation for it [in our repository](https://github.com/changesets/changesets).
+
+We have a quick list of common questions to get you started engaging with this project in
+[our documentation](https://github.com/changesets/changesets/blob/main/docs/common-questions.md).

package/.changeset/config.json

@@ -0,0 +1,11 @@
+{
+  "$schema": "https://unpkg.com/@changesets/config@3.1.3/schema.json",
+  "changelog": "@changesets/cli/changelog",
+  "commit": false,
+  "fixed": [],
+  "linked": [],
+  "access": "restricted",
+  "baseBranch": "main",
+  "updateInternalDependencies": "patch",
+  "ignore": []
+}

package/.lintstagedrc.js

@@ -1,4 +1,4 @@
 export default {
   "*": "prettier --write --ignore-unknown",
-  "*.js,*.ts": "eslint --fix"
+  "*.{js,ts,mjs,mts,cjs,cts}": "oxlint --fix"
 };

package/.oxlintrc.json

@@ -0,0 +1,19 @@
+{
+  "$schema": "https://raw.githubusercontent.com/oxc-project/oxc/main/npm/oxlint/configuration_schema.json",
+  "plugins": ["typescript"],
+  "env": {
+    "es2022": true,
+    "node": true
+  },
+  "rules": {
+    "no-unused-vars": "off",
+    "@typescript-eslint/no-unused-vars": "error",
+    "@typescript-eslint/no-explicit-any": "error"
+  },
+  "ignorePatterns": [
+    "dist/",
+    "node_modules/",
+    "docs/.vitepress/cache/",
+    "pnpm-lock.yaml"
+  ]
+}

package/.prettierignore

@@ -1,2 +1,3 @@
 dist
 .knowledge/docsets
+.claude

package/commitlint.config.js

@@ -0,0 +1,3 @@
+export default {
+  extends: ["@commitlint/config-conventional"]
+};

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@codemcp/ade",
-  "version": "0.2.0",
+  "version": "0.2.2",
   "description": "ADE CLI — Agentic Development Environment setup and configuration tool",
   "license": "MIT",
   "keywords": [
@@ -16,7 +16,7 @@
   },
   "engines": {
     "node": ">=22",
-    "pnpm": ">=9.0.0"
+    "pnpm": ">=10.0.0"
   },
   "type": "module",
   "bin": {
@@ -26,54 +26,52 @@
     "access": "public"
   },
   "devDependencies": {
-    "@braintree/sanitize-url": "7.1.1",
-    "@eslint/js": "9.18.0",
-    "@swc/core": "^1.10.9",
-    "@tsconfig/node22": "22.0.0",
-    "@tsconfig/strictest": "2.0.5",
-    "@types/eslint-config-prettier": "6.11.3",
+    "@changesets/cli": "^2.30.0",
+    "@commitlint/cli": "^19.6.0",
+    "@commitlint/config-conventional": "^19.6.0",
+    "@tsconfig/node22": "^22.0.5",
+    "@turbo/gen": "^2.8.17",
     "@types/node": "^22.10.7",
-    "@typescript-eslint/eslint-plugin": "^8.21.0",
-    "@typescript-eslint/parser": "^8.21.0",
-    "@vitest/coverage-v8": "^3.0.3",
+    "@vitest/coverage-v8": "^3.2.4",
     "cytoscape": "3.31.0",
     "cytoscape-cose-bilkent": "4.1.0",
     "dayjs": "1.11.13",
     "debug": "4.4.0",
-    "eslint": "^9.18.0",
-    "eslint-config-prettier": "^10.0.1",
     "husky": "^9.1.7",
-    "lint-staged": "^15.4.1",
-    "nodemon": "^3.1.9",
+    "knip": "^5.86.0",
+    "lint-staged": "^16.0.0",
+    "oxlint": "^1.0.0",
     "prettier": "^3.4.2",
-    "rimraf": "^6.0.1",
-    "turbo": "^2.3.3",
-    "typescript": "^5.7.3",
-    "typescript-eslint": "8.21.0",
+    "turbo": "^2.8.17",
+    "typescript": "^5.9.3",
     "vitepress": "1.6.2",
     "vitepress-plugin-mermaid": "2.0.17",
-    "vitest": "^3.0.3"
+    "vitest": "^3.2.4"
   },
   "dependencies": {
     "yaml": "^2.8.2"
   },
   "scripts": {
     "build": "turbo run build",
-    "build:clean": "turbo run clean:build",
+    "clean": "turbo run clean:build",
     "dev": "turbo run dev",
     "docs:dev": "vitepress dev docs",
     "docs:build": "vitepress build docs",
     "docs:preview": "vitepress preview docs",
-    "test": "turbo run --parallel test",
-    "test:watch": "turbo run --parallel test:watch",
+    "test": "vitest --run",
+    "test:watch": "vitest",
     "lint:all": "turbo run --parallel lint",
     "lint:fix:all": "turbo run --parallel lint:fix",
     "format:check:all": "turbo run --parallel format",
     "format:all": "turbo run --parallel format:fix",
     "typecheck:all": "turbo run --parallel typecheck",
-    "lint": "eslint",
-    "lint:fix": "eslint --fix",
+    "lint": "oxlint .",
+    "lint:fix": "oxlint --fix .",
     "format": "prettier --check .",
-    "format:fix": "prettier --write ."
+    "format:fix": "prettier --write .",
+    "knip": "knip",
+    "changeset": "changeset",
+    "version": "changeset version",
+    "release": "pnpm build && changeset publish"
   }
 }

package/packages/cli/dist/index.js

@@ -1,43 +1,285 @@
 #!/usr/bin/env node
-import { version } from "./version.js";
-import { runSetup } from "./commands/setup.js";
-import { runInstall } from "./commands/install.js";
-import { getDefaultCatalog } from "@codemcp/ade-core";
-import { getHarnessIds } from "@codemcp/ade-harnesses";
-const args = process.argv.slice(2);
-const command = args[0];
-if (command === "setup") {
-    const projectRoot = args[1] ?? process.cwd();
-    const catalog = getDefaultCatalog();
-    await runSetup(projectRoot, catalog);
+
+// src/version.ts
+var version = "0.0.0-development";
+
+// src/commands/setup.ts
+import * as clack from "@clack/prompts";
+import {
+  readUserConfig,
+  writeUserConfig,
+  writeLockFile,
+  resolve,
+  collectDocsets,
+  createDefaultRegistry,
+  getFacet,
+  getOption,
+  sortFacets,
+  getVisibleOptions
+} from "@codemcp/ade-core";
+import {
+  allHarnessWriters,
+  getHarnessWriter,
+  installSkills,
+  writeInlineSkills
+} from "@codemcp/ade-harnesses";
+async function runSetup(projectRoot, catalog) {
+  clack.intro("ade setup");
+  const existingConfig = await readUserConfig(projectRoot);
+  const existingChoices = existingConfig?.choices ?? {};
+  for (const [facetId, value] of Object.entries(existingChoices)) {
+    const facet = getFacet(catalog, facetId);
+    if (!facet) continue;
+    const ids = Array.isArray(value) ? value : [value];
+    for (const optionId of ids) {
+      if (!getOption(facet, optionId)) {
+        clack.log.warn(
+          `Previously selected option "${optionId}" is no longer available in facet "${facet.label}".`
+        );
+      }
+    }
+  }
+  const choices = {};
+  const sortedFacets = sortFacets(catalog);
+  for (const facet of sortedFacets) {
+    const visibleOptions = getVisibleOptions(facet, choices, catalog);
+    if (visibleOptions.length === 0) continue;
+    const visibleFacet = { ...facet, options: visibleOptions };
+    if (facet.multiSelect) {
+      const selected = await promptMultiSelect(visibleFacet, existingChoices);
+      if (typeof selected === "symbol") {
+        clack.cancel("Setup cancelled.");
+        return;
+      }
+      if (selected.length > 0) {
+        choices[facet.id] = selected;
+      }
+    } else {
+      const selected = await promptSelect(visibleFacet, existingChoices);
+      if (typeof selected === "symbol") {
+        clack.cancel("Setup cancelled.");
+        return;
+      }
+      if (typeof selected === "string" && selected !== "__skip__") {
+        choices[facet.id] = selected;
+      }
+    }
+  }
+  const impliedDocsets = collectDocsets(choices, catalog);
+  let excludedDocsets;
+  if (impliedDocsets.length > 0) {
+    const selected = await clack.multiselect({
+      message: "Documentation \u2014 deselect any you don't need",
+      options: impliedDocsets.map((d) => ({
+        value: d.id,
+        label: d.label,
+        hint: d.description
+      })),
+      initialValues: impliedDocsets.map((d) => d.id),
+      required: false
+    });
+    if (typeof selected === "symbol") {
+      clack.cancel("Setup cancelled.");
+      return;
+    }
+    const selectedSet = new Set(selected);
+    const excluded = impliedDocsets.filter((d) => !selectedSet.has(d.id)).map((d) => d.id);
+    if (excluded.length > 0) {
+      excludedDocsets = excluded;
+    }
+  }
+  const existingHarnesses = existingConfig?.harnesses;
+  const harnessOptions = allHarnessWriters.map((w) => ({
+    value: w.id,
+    label: w.label,
+    hint: w.description
+  }));
+  const validExistingHarnesses = existingHarnesses?.filter(
+    (h) => allHarnessWriters.some((w) => w.id === h)
+  );
+  const selectedHarnesses = await clack.multiselect({
+    message: "Harnesses \u2014 which coding agents should receive config?",
+    options: harnessOptions,
+    initialValues: validExistingHarnesses && validExistingHarnesses.length > 0 ? validExistingHarnesses : ["universal"],
+    required: false
+  });
+  if (typeof selectedHarnesses === "symbol") {
+    clack.cancel("Setup cancelled.");
+    return;
+  }
+  const harnesses = selectedHarnesses;
+  const userConfig = {
+    choices,
+    ...excludedDocsets && { excluded_docsets: excludedDocsets },
+    ...harnesses.length > 0 && { harnesses }
+  };
+  const registry = createDefaultRegistry();
+  const logicalConfig = await resolve(userConfig, catalog, registry);
+  await writeUserConfig(projectRoot, userConfig);
+  const lockFile = {
+    version: 1,
+    generated_at: (/* @__PURE__ */ new Date()).toISOString(),
+    choices: userConfig.choices,
+    ...harnesses.length > 0 && { harnesses },
+    logical_config: logicalConfig
+  };
+  await writeLockFile(projectRoot, lockFile);
+  for (const harnessId of harnesses) {
+    const writer = getHarnessWriter(harnessId);
+    if (writer) {
+      await writer.install(logicalConfig, projectRoot);
+    }
+  }
+  const modifiedSkills = await writeInlineSkills(logicalConfig, projectRoot);
+  if (modifiedSkills.length > 0) {
+    clack.log.warn(
+      `The following skills have been locally modified and will NOT be updated:
+` + modifiedSkills.map((s) => `  - ${s}`).join("\n") + `
+
+To use the latest defaults, remove .ade/skills/ and re-run setup.`
+    );
+  }
+  await installSkills(logicalConfig.skills, projectRoot);
+  if (logicalConfig.knowledge_sources.length > 0) {
+    clack.log.info(
+      "Knowledge sources selected. Initialize them separately:\n  npx @codemcp/knowledge init"
+    );
+  }
+  for (const note of logicalConfig.setup_notes) {
+    clack.log.info(note);
+  }
+  clack.outro("Setup complete!");
+}
+function getValidInitialValue(facet, existingChoices) {
+  const value = existingChoices[facet.id];
+  if (typeof value !== "string") return void 0;
+  return facet.options.some((o) => o.id === value) ? value : void 0;
 }
-else if (command === "install") {
-    const projectRoot = args[1] ?? process.cwd();
-    let harnessIds;
-    // Support --harness flag (comma-separated)
-    if (args.includes("--harness")) {
-        const val = args[args.indexOf("--harness") + 1];
-        if (val) {
-            harnessIds = val.split(",").map((s) => s.trim());
-        }
-    }
-    await runInstall(projectRoot, harnessIds);
+function getValidInitialValues(facet, existingChoices) {
+  const value = existingChoices[facet.id];
+  if (!Array.isArray(value)) return void 0;
+  const valid = value.filter((v) => facet.options.some((o) => o.id === v));
+  return valid.length > 0 ? valid : void 0;
 }
-else if (command === "--version" || command === "-v") {
-    console.log(version);
+function promptSelect(facet, existingChoices) {
+  const options = facet.options.map((o) => ({
+    value: o.id,
+    label: o.label,
+    hint: o.description
+  }));
+  if (!facet.required) {
+    options.push({ value: "__skip__", label: "Skip", hint: "" });
+  }
+  const initialValue = getValidInitialValue(facet, existingChoices);
+  return clack.select({
+    message: facet.label,
+    options,
+    ...initialValue !== void 0 && { initialValue }
+  });
 }
-else {
-    const allIds = getHarnessIds();
-    console.log(`ade v${version}`);
-    console.log();
-    console.log("Usage: ade <command> [options]");
-    console.log();
-    console.log("Commands:");
-    console.log("  setup [dir]      Interactive setup wizard (re-run to change selections)");
-    console.log("  install [dir]    Apply lock file to generate agent files (idempotent)");
-    console.log();
-    console.log("Options:");
-    console.log(`  --harness <ids>  Comma-separated harnesses (${allIds.join(", ")})`);
-    console.log("  -v, --version    Show version");
-    process.exitCode = command ? 1 : 0;
+function promptMultiSelect(facet, existingChoices) {
+  const options = facet.options.map((o) => ({
+    value: o.id,
+    label: o.label,
+    hint: o.description
+  }));
+  const initialValues = getValidInitialValues(facet, existingChoices);
+  return clack.multiselect({
+    message: facet.label,
+    options,
+    required: false,
+    ...initialValues !== void 0 && { initialValues }
+  });
+}
+
+// src/commands/install.ts
+import * as clack2 from "@clack/prompts";
+import { readLockFile } from "@codemcp/ade-core";
+import {
+  getHarnessWriter as getHarnessWriter2,
+  getHarnessIds,
+  installSkills as installSkills2,
+  writeInlineSkills as writeInlineSkills2
+} from "@codemcp/ade-harnesses";
+async function runInstall(projectRoot, harnessIds) {
+  clack2.intro("ade install");
+  const lockFile = await readLockFile(projectRoot);
+  if (!lockFile) {
+    throw new Error("config.lock.yaml not found. Run `ade setup` first.");
+  }
+  const ids = harnessIds ?? lockFile.harnesses ?? ["universal"];
+  const validIds = getHarnessIds();
+  for (const id of ids) {
+    if (!validIds.includes(id)) {
+      throw new Error(
+        `Unknown harness "${id}". Available: ${validIds.join(", ")}`
+      );
+    }
+  }
+  const logicalConfig = lockFile.logical_config;
+  for (const id of ids) {
+    const writer = getHarnessWriter2(id);
+    if (writer) {
+      await writer.install(logicalConfig, projectRoot);
+    }
+  }
+  const modifiedSkills = await writeInlineSkills2(logicalConfig, projectRoot);
+  if (modifiedSkills.length > 0) {
+    clack2.log.warn(
+      `The following skills have been locally modified and will NOT be updated:
+` + modifiedSkills.map((s) => `  - ${s}`).join("\n") + `
+
+To use the latest defaults, remove .ade/skills/ and re-run install.`
+    );
+  }
+  await installSkills2(logicalConfig.skills, projectRoot);
+  if (logicalConfig.knowledge_sources.length > 0) {
+    clack2.log.info(
+      "Knowledge sources configured. Initialize them separately:\n  npx @codemcp/knowledge init"
+    );
+  }
+  clack2.outro("Install complete!");
+}
+
+// src/index.ts
+import { getDefaultCatalog } from "@codemcp/ade-core";
+import { getHarnessIds as getHarnessIds2 } from "@codemcp/ade-harnesses";
+var args = process.argv.slice(2);
+var command = args[0];
+if (command === "setup") {
+  const projectRoot = args[1] ?? process.cwd();
+  const catalog = getDefaultCatalog();
+  await runSetup(projectRoot, catalog);
+} else if (command === "install") {
+  const projectRoot = args[1] ?? process.cwd();
+  let harnessIds;
+  if (args.includes("--harness")) {
+    const val = args[args.indexOf("--harness") + 1];
+    if (val) {
+      harnessIds = val.split(",").map((s) => s.trim());
+    }
+  }
+  await runInstall(projectRoot, harnessIds);
+} else if (command === "--version" || command === "-v") {
+  console.log(version);
+} else {
+  const allIds = getHarnessIds2();
+  console.log(`ade v${version}`);
+  console.log();
+  console.log("Usage: ade <command> [options]");
+  console.log();
+  console.log("Commands:");
+  console.log(
+    "  setup [dir]      Interactive setup wizard (re-run to change selections)"
+  );
+  console.log(
+    "  install [dir]    Apply lock file to generate agent files (idempotent)"
+  );
+  console.log();
+  console.log("Options:");
+  console.log(
+    `  --harness <ids>  Comma-separated harnesses (${allIds.join(", ")})`
+  );
+  console.log("  -v, --version    Show version");
+  process.exitCode = command ? 1 : 0;
 }

package/packages/cli/package.json

@@ -6,20 +6,23 @@
   "bin": {
     "ade": "dist/index.js"
   },
+  "files": [
+    "dist"
+  ],
   "publishConfig": {
     "access": "public"
   },
   "scripts": {
-    "build": "tsc -p tsconfig.build.json",
+    "build": "tsup",
     "clean:build": "rimraf ./dist",
-    "dev": "nodemon",
-    "lint": "eslint .",
-    "lint:fix": "eslint --fix .",
+    "dev": "tsup --watch",
+    "lint": "oxlint .",
+    "lint:fix": "oxlint --fix .",
     "format": "prettier --check .",
     "format:fix": "prettier --write .",
     "test": "vitest --run",
     "test:watch": "vitest",
-    "typecheck": "tsc"
+    "typecheck": "tsc --noEmit"
   },
   "dependencies": {
     "@codemcp/ade-core": "workspace:*",
@@ -28,13 +31,12 @@
   },
   "devDependencies": {
     "@codemcp/knowledge": "2.1.0",
-    "@typescript-eslint/eslint-plugin": "^8.21.0",
-    "@typescript-eslint/parser": "^8.21.0",
-    "eslint": "^9.18.0",
-    "eslint-config-prettier": "^10.0.1",
-    "prettier": "^3.4.2",
-    "rimraf": "^6.0.1",
-    "typescript": "^5.7.3"
+    "oxlint": "catalog:",
+    "prettier": "catalog:",
+    "rimraf": "catalog:",
+    "tsup": "catalog:",
+    "typescript": "catalog:",
+    "vitest": "catalog:"
   },
-  "version": "0.2.0"
+  "version": "0.2.2"
 }

package/packages/cli/tsup.config.ts

@@ -0,0 +1,10 @@
+import { defineConfig } from "tsup";
+
+export default defineConfig({
+  entry: ["src/index.ts"],
+  format: ["esm"],
+  dts: true,
+  tsconfig: "tsconfig.build.json",
+  target: "node22",
+  clean: true
+});

package/packages/core/package.json

@@ -3,32 +3,40 @@
   "main": "dist/index.js",
   "types": "dist/index.d.ts",
   "type": "module",
+  "files": [
+    "dist"
+  ],
+  "exports": {
+    ".": {
+      "import": "./dist/index.js",
+      "types": "./dist/index.d.ts"
+    }
+  },
   "publishConfig": {
     "access": "public"
   },
   "scripts": {
     "build": "tsc -p tsconfig.build.json",
     "clean:build": "rimraf ./dist",
-    "dev": "nodemon",
-    "lint": "eslint .",
-    "lint:fix": "eslint --fix .",
+    "dev": "tsx watch src/index.ts",
+    "lint": "oxlint .",
+    "lint:fix": "oxlint --fix .",
     "format": "prettier --check .",
     "format:fix": "prettier --write .",
     "test": "vitest --run",
     "test:watch": "vitest",
-    "typecheck": "tsc"
-  },
-  "devDependencies": {
-    "@typescript-eslint/eslint-plugin": "^8.21.0",
-    "@typescript-eslint/parser": "^8.21.0",
-    "eslint": "^9.18.0",
-    "eslint-config-prettier": "^10.0.1",
-    "prettier": "^3.4.2",
-    "rimraf": "^6.0.1",
-    "typescript": "^5.7.3"
+    "typecheck": "tsc --noEmit"
   },
   "dependencies": {
     "yaml": "^2.8.2"
   },
-  "version": "0.2.0"
+  "devDependencies": {
+    "oxlint": "catalog:",
+    "prettier": "catalog:",
+    "rimraf": "catalog:",
+    "tsx": "catalog:",
+    "typescript": "catalog:",
+    "vitest": "catalog:"
+  },
+  "version": "0.2.2"
 }

package/packages/harnesses/package.json

@@ -3,33 +3,41 @@
   "main": "dist/index.js",
   "types": "dist/index.d.ts",
   "type": "module",
+  "files": [
+    "dist"
+  ],
+  "exports": {
+    ".": {
+      "import": "./dist/index.js",
+      "types": "./dist/index.d.ts"
+    }
+  },
   "publishConfig": {
     "access": "public"
   },
   "scripts": {
     "build": "tsc -p tsconfig.build.json",
     "clean:build": "rimraf ./dist",
-    "dev": "nodemon",
-    "lint": "eslint .",
-    "lint:fix": "eslint --fix .",
+    "dev": "tsx watch src/index.ts",
+    "lint": "oxlint .",
+    "lint:fix": "oxlint --fix .",
     "format": "prettier --check .",
     "format:fix": "prettier --write .",
     "test": "vitest --run",
     "test:watch": "vitest",
-    "typecheck": "tsc"
+    "typecheck": "tsc --noEmit"
   },
   "dependencies": {
     "@codemcp/ade-core": "workspace:*",
     "@codemcp/skills": "^2.3.0"
   },
   "devDependencies": {
-    "@typescript-eslint/eslint-plugin": "^8.21.0",
-    "@typescript-eslint/parser": "^8.21.0",
-    "eslint": "^9.18.0",
-    "eslint-config-prettier": "^10.0.1",
-    "prettier": "^3.4.2",
-    "rimraf": "^6.0.1",
-    "typescript": "^5.7.3"
+    "oxlint": "catalog:",
+    "prettier": "catalog:",
+    "rimraf": "catalog:",
+    "tsx": "catalog:",
+    "typescript": "catalog:",
+    "vitest": "catalog:"
   },
-  "version": "0.2.0"
+  "version": "0.2.2"
 }

package/pnpm-workspace.yaml

@@ -1,2 +1,19 @@
 packages:
   - "packages/*"
+
+catalog:
+  # TypeScript
+  typescript: "^5.9.3"
+  "@tsconfig/node22": "^22.0.5"
+  "@types/node": "^22.10.7"
+  # Linting — oxlint replaces ESLint + typescript-eslint + eslint-config-prettier
+  oxlint: "^1.0.0"
+  # Formatting
+  prettier: "^3.4.2"
+  # Testing — pinned to 3.x; vitest 4+ requires vite 6 which vitepress 1.x doesn't support yet
+  vitest: "^3.2.4"
+  "@vitest/coverage-v8": "^3.2.4"
+  # Build / Dev
+  rimraf: "^6.1.3"
+  tsx: "^4.19.0"
+  tsup: "^8.3.0"

package/packages/cli/dist/commands/install.js

@@ -1,39 +0,0 @@
-import * as clack from "@clack/prompts";
-import { readLockFile } from "@codemcp/ade-core";
-import { getHarnessWriter, getHarnessIds, installSkills, writeInlineSkills } from "@codemcp/ade-harnesses";
-export async function runInstall(projectRoot, harnessIds) {
-    clack.intro("ade install");
-    const lockFile = await readLockFile(projectRoot);
-    if (!lockFile) {
-        throw new Error("config.lock.yaml not found. Run `ade setup` first.");
-    }
-    // Determine which harnesses to install for:
-    // 1. --harness flag (comma-separated)
-    // 2. harnesses saved in the lock file
-    // 3. default: universal
-    const ids = harnessIds ?? lockFile.harnesses ?? ["universal"];
-    const validIds = getHarnessIds();
-    for (const id of ids) {
-        if (!validIds.includes(id)) {
-            throw new Error(`Unknown harness "${id}". Available: ${validIds.join(", ")}`);
-        }
-    }
-    const logicalConfig = lockFile.logical_config;
-    for (const id of ids) {
-        const writer = getHarnessWriter(id);
-        if (writer) {
-            await writer.install(logicalConfig, projectRoot);
-        }
-    }
-    const modifiedSkills = await writeInlineSkills(logicalConfig, projectRoot);
-    if (modifiedSkills.length > 0) {
-        clack.log.warn(`The following skills have been locally modified and will NOT be updated:\n` +
-            modifiedSkills.map((s) => `  - ${s}`).join("\n") +
-            `\n\nTo use the latest defaults, remove .ade/skills/ and re-run install.`);
-    }
-    await installSkills(logicalConfig.skills, projectRoot);
-    if (logicalConfig.knowledge_sources.length > 0) {
-        clack.log.info("Knowledge sources configured. Initialize them separately:\n  npx @codemcp/knowledge init");
-    }
-    clack.outro("Install complete!");
-}

package/packages/cli/dist/commands/setup.js

@@ -1,177 +0,0 @@
-import * as clack from "@clack/prompts";
-import { readUserConfig, writeUserConfig, writeLockFile, resolve, collectDocsets, createDefaultRegistry, getFacet, getOption, sortFacets, getVisibleOptions } from "@codemcp/ade-core";
-import { allHarnessWriters, getHarnessWriter, installSkills, writeInlineSkills } from "@codemcp/ade-harnesses";
-export async function runSetup(projectRoot, catalog) {
-    clack.intro("ade setup");
-    const existingConfig = await readUserConfig(projectRoot);
-    const existingChoices = existingConfig?.choices ?? {};
-    // Warn about stale choices that reference options no longer in the catalog
-    for (const [facetId, value] of Object.entries(existingChoices)) {
-        const facet = getFacet(catalog, facetId);
-        if (!facet)
-            continue;
-        const ids = Array.isArray(value) ? value : [value];
-        for (const optionId of ids) {
-            if (!getOption(facet, optionId)) {
-                clack.log.warn(`Previously selected option "${optionId}" is no longer available in facet "${facet.label}".`);
-            }
-        }
-    }
-    const choices = {};
-    const sortedFacets = sortFacets(catalog);
-    for (const facet of sortedFacets) {
-        const visibleOptions = getVisibleOptions(facet, choices, catalog);
-        if (visibleOptions.length === 0)
-            continue;
-        const visibleFacet = { ...facet, options: visibleOptions };
-        if (facet.multiSelect) {
-            const selected = await promptMultiSelect(visibleFacet, existingChoices);
-            if (typeof selected === "symbol") {
-                clack.cancel("Setup cancelled.");
-                return;
-            }
-            if (selected.length > 0) {
-                choices[facet.id] = selected;
-            }
-        }
-        else {
-            const selected = await promptSelect(visibleFacet, existingChoices);
-            if (typeof selected === "symbol") {
-                clack.cancel("Setup cancelled.");
-                return;
-            }
-            if (typeof selected === "string" && selected !== "__skip__") {
-                choices[facet.id] = selected;
-            }
-        }
-    }
-    // Docset confirmation step: collect implied docsets, let user deselect
-    const impliedDocsets = collectDocsets(choices, catalog);
-    let excludedDocsets;
-    if (impliedDocsets.length > 0) {
-        const selected = await clack.multiselect({
-            message: "Documentation — deselect any you don't need",
-            options: impliedDocsets.map((d) => ({
-                value: d.id,
-                label: d.label,
-                hint: d.description
-            })),
-            initialValues: impliedDocsets.map((d) => d.id),
-            required: false
-        });
-        if (typeof selected === "symbol") {
-            clack.cancel("Setup cancelled.");
-            return;
-        }
-        const selectedSet = new Set(selected);
-        const excluded = impliedDocsets
-            .filter((d) => !selectedSet.has(d.id))
-            .map((d) => d.id);
-        if (excluded.length > 0) {
-            excludedDocsets = excluded;
-        }
-    }
-    // Harness selection — multi-select from all available harnesses
-    const existingHarnesses = existingConfig?.harnesses;
-    const harnessOptions = allHarnessWriters.map((w) => ({
-        value: w.id,
-        label: w.label,
-        hint: w.description
-    }));
-    const validExistingHarnesses = existingHarnesses?.filter((h) => allHarnessWriters.some((w) => w.id === h));
-    const selectedHarnesses = await clack.multiselect({
-        message: "Harnesses — which coding agents should receive config?",
-        options: harnessOptions,
-        initialValues: validExistingHarnesses && validExistingHarnesses.length > 0
-            ? validExistingHarnesses
-            : ["universal"],
-        required: false
-    });
-    if (typeof selectedHarnesses === "symbol") {
-        clack.cancel("Setup cancelled.");
-        return;
-    }
-    const harnesses = selectedHarnesses;
-    const userConfig = {
-        choices,
-        ...(excludedDocsets && { excluded_docsets: excludedDocsets }),
-        ...(harnesses.length > 0 && { harnesses })
-    };
-    const registry = createDefaultRegistry();
-    const logicalConfig = await resolve(userConfig, catalog, registry);
-    await writeUserConfig(projectRoot, userConfig);
-    const lockFile = {
-        version: 1,
-        generated_at: new Date().toISOString(),
-        choices: userConfig.choices,
-        ...(harnesses.length > 0 && { harnesses }),
-        logical_config: logicalConfig
-    };
-    await writeLockFile(projectRoot, lockFile);
-    // Install to all selected harnesses
-    for (const harnessId of harnesses) {
-        const writer = getHarnessWriter(harnessId);
-        if (writer) {
-            await writer.install(logicalConfig, projectRoot);
-        }
-    }
-    const modifiedSkills = await writeInlineSkills(logicalConfig, projectRoot);
-    if (modifiedSkills.length > 0) {
-        clack.log.warn(`The following skills have been locally modified and will NOT be updated:\n` +
-            modifiedSkills.map((s) => `  - ${s}`).join("\n") +
-            `\n\nTo use the latest defaults, remove .ade/skills/ and re-run setup.`);
-    }
-    await installSkills(logicalConfig.skills, projectRoot);
-    if (logicalConfig.knowledge_sources.length > 0) {
-        clack.log.info("Knowledge sources selected. Initialize them separately:\n  npx @codemcp/knowledge init");
-    }
-    for (const note of logicalConfig.setup_notes) {
-        clack.log.info(note);
-    }
-    clack.outro("Setup complete!");
-}
-function getValidInitialValue(facet, existingChoices) {
-    const value = existingChoices[facet.id];
-    if (typeof value !== "string")
-        return undefined;
-    // Only set initialValue if the option still exists in the catalog
-    return facet.options.some((o) => o.id === value) ? value : undefined;
-}
-function getValidInitialValues(facet, existingChoices) {
-    const value = existingChoices[facet.id];
-    if (!Array.isArray(value))
-        return undefined;
-    // Only include options that still exist in the catalog
-    const valid = value.filter((v) => facet.options.some((o) => o.id === v));
-    return valid.length > 0 ? valid : undefined;
-}
-function promptSelect(facet, existingChoices) {
-    const options = facet.options.map((o) => ({
-        value: o.id,
-        label: o.label,
-        hint: o.description
-    }));
-    if (!facet.required) {
-        options.push({ value: "__skip__", label: "Skip", hint: "" });
-    }
-    const initialValue = getValidInitialValue(facet, existingChoices);
-    return clack.select({
-        message: facet.label,
-        options,
-        ...(initialValue !== undefined && { initialValue })
-    });
-}
-function promptMultiSelect(facet, existingChoices) {
-    const options = facet.options.map((o) => ({
-        value: o.id,
-        label: o.label,
-        hint: o.description
-    }));
-    const initialValues = getValidInitialValues(facet, existingChoices);
-    return clack.multiselect({
-        message: facet.label,
-        options,
-        required: false,
-        ...(initialValues !== undefined && { initialValues })
-    });
-}

package/packages/cli/dist/knowledge-installer.js

@@ -1,38 +0,0 @@
-import { createDocset, initDocset } from "@codemcp/knowledge/packages/cli/dist/exports.js";
-/**
- * Install knowledge sources using the @codemcp/knowledge programmatic API.
- *
- * For each knowledge source:
- * 1. Creates a docset config entry via `createDocset`
- * 2. Initializes (downloads) the docset via `initDocset`
- *
- * Errors on individual sources are logged and skipped so that one failure
- * doesn't block the rest.
- */
-export async function installKnowledge(sources, projectRoot) {
-    if (sources.length === 0)
-        return;
-    for (const source of sources) {
-        try {
-            await createDocset({
-                id: source.name,
-                name: source.description,
-                preset: "git-repo",
-                url: source.origin
-            }, { cwd: projectRoot });
-        }
-        catch (err) {
-            console.warn(`Warning: failed to create docset "${source.name}":`, err instanceof Error ? err.message : err);
-            continue;
-        }
-        try {
-            await initDocset({
-                docsetId: source.name,
-                cwd: projectRoot
-            });
-        }
-        catch (err) {
-            console.warn(`Warning: failed to initialize docset "${source.name}":`, err instanceof Error ? err.message : err);
-        }
-    }
-}

package/packages/cli/dist/version.js

@@ -1 +0,0 @@
-export const version = "0.0.0-development";

package/packages/cli/eslint.config.mjs

@@ -1,40 +0,0 @@
-import js from "@eslint/js";
-import { parser, configs } from "typescript-eslint";
-import prettier from "eslint-config-prettier";
-
-export default [
-  js.configs.recommended,
-  ...configs.recommended,
-  prettier,
-  {
-    // Config for TypeScript files
-    files: ["**/*.{ts,tsx}"],
-    languageOptions: {
-      parser,
-      parserOptions: {
-        project: ["./tsconfig.json", "./tsconfig.vitest.json"]
-      }
-    }
-  },
-  {
-    // Config for JavaScript files - no TypeScript parsing
-    files: ["**/*.{js,jsx}"],
-    ...js.configs.recommended
-  },
-  {
-    // Relaxed rules for test files
-    files: ["**/*.test.ts", "**/*.spec.ts"],
-    rules: {
-      "@typescript-eslint/no-explicit-any": "off",
-      "@typescript-eslint/no-unused-vars": "off"
-    }
-  },
-  {
-    ignores: [
-      "**/node_modules/**",
-      "**/dist/**",
-      ".pnpm-store/**",
-      "pnpm-lock.yaml"
-    ]
-  }
-];

package/packages/cli/nodemon.json

@@ -1,7 +0,0 @@
-{
-  "$schema": "https://json.schemastore.org/nodemon.json",
-  "watch": ["./src/**", "./node_modules/@mme/**/dist/**"],
-  "ignoreRoot": [],
-  "ext": "ts,js",
-  "exec": "pnpm typecheck && pnpm build"
-}

package/packages/core/eslint.config.mjs

@@ -1,40 +0,0 @@
-import js from "@eslint/js";
-import { parser, configs } from "typescript-eslint";
-import prettier from "eslint-config-prettier";
-
-export default [
-  js.configs.recommended,
-  ...configs.recommended,
-  prettier,
-  {
-    // Config for TypeScript files
-    files: ["**/*.{ts,tsx}"],
-    languageOptions: {
-      parser,
-      parserOptions: {
-        project: ["./tsconfig.json", "./tsconfig.vitest.json"]
-      }
-    }
-  },
-  {
-    // Config for JavaScript files - no TypeScript parsing
-    files: ["**/*.{js,jsx}"],
-    ...js.configs.recommended
-  },
-  {
-    // Relaxed rules for test files
-    files: ["**/*.test.ts", "**/*.spec.ts"],
-    rules: {
-      "@typescript-eslint/no-explicit-any": "off",
-      "@typescript-eslint/no-unused-vars": "off"
-    }
-  },
-  {
-    ignores: [
-      "**/node_modules/**",
-      "**/dist/**",
-      ".pnpm-store/**",
-      "pnpm-lock.yaml"
-    ]
-  }
-];

package/packages/core/nodemon.json

@@ -1,7 +0,0 @@
-{
-  "$schema": "https://json.schemastore.org/nodemon.json",
-  "watch": ["./src/**", "./node_modules/@mme/**/dist/**"],
-  "ignoreRoot": [],
-  "ext": "ts,js",
-  "exec": "pnpm typecheck && pnpm build"
-}

package/packages/harnesses/eslint.config.mjs

@@ -1,40 +0,0 @@
-import js from "@eslint/js";
-import { parser, configs } from "typescript-eslint";
-import prettier from "eslint-config-prettier";
-
-export default [
-  js.configs.recommended,
-  ...configs.recommended,
-  prettier,
-  {
-    // Config for TypeScript files
-    files: ["**/*.{ts,tsx}"],
-    languageOptions: {
-      parser,
-      parserOptions: {
-        project: ["./tsconfig.json", "./tsconfig.vitest.json"]
-      }
-    }
-  },
-  {
-    // Config for JavaScript files - no TypeScript parsing
-    files: ["**/*.{js,jsx}"],
-    ...js.configs.recommended
-  },
-  {
-    // Relaxed rules for test files
-    files: ["**/*.test.ts", "**/*.spec.ts"],
-    rules: {
-      "@typescript-eslint/no-explicit-any": "off",
-      "@typescript-eslint/no-unused-vars": "off"
-    }
-  },
-  {
-    ignores: [
-      "**/node_modules/**",
-      "**/dist/**",
-      ".pnpm-store/**",
-      "pnpm-lock.yaml"
-    ]
-  }
-];