@codebakers/cli 3.9.32 → 3.9.34

package/dist/mcp/server.js

@@ -1353,6 +1353,28 @@ class CodeBakersServer {
                         properties: {},
                     },
                 },
+                {
+                    name: 'coherence_audit',
+                    description: 'Full codebase coherence audit. Checks all imports/exports, type flows, schema dependencies, API contracts, env vars, circular dependencies, and dead code. Use this for the /coherence command or when user asks to check wiring/dependencies.',
+                    inputSchema: {
+                        type: 'object',
+                        properties: {
+                            focus: {
+                                type: 'string',
+                                enum: ['all', 'imports', 'types', 'schema', 'api', 'env', 'circular', 'dead-code'],
+                                description: 'Focus area for the audit (default: all)',
+                            },
+                            autoFix: {
+                                type: 'boolean',
+                                description: 'Automatically fix issues that can be auto-fixed (default: false)',
+                            },
+                            includeNodeModules: {
+                                type: 'boolean',
+                                description: 'Include node_modules in analysis (default: false, very slow)',
+                            },
+                        },
+                    },
+                },
                 // ============================================
                 // PROJECT TRACKING - Server-Side Dashboard
                 // ============================================
@@ -1632,6 +1654,8 @@ class CodeBakersServer {
                     return this.handleGuardianVerify(args);
                 case 'guardian_status':
                     return this.handleGuardianStatus();
+                case 'coherence_audit':
+                    return this.handleCoherenceAudit(args);
                 // Project Tracking - Server-Side Dashboard
                 case 'project_sync':
                     return this.handleProjectSync(args);
@@ -2466,9 +2490,17 @@ Or if user declines, call without fullDeploy:
         catch {
             // Use default
         }
-        results.push(`# 🎨 Adding CodeBakers v6.15 to: ${projectName}\n`);
-        // v6.15 bootstrap content - SHORT template with rules at START and END
-        const V6_CLAUDE_MD = `# CodeBakers v6.15
+        results.push(`# 🎨 Adding CodeBakers v6.18 to: ${projectName}\n`);
+        // v6.18 bootstrap content - magic phrase + rules at START and END + coherence
+        const V6_CLAUDE_MD = `# CodeBakers v6.18
+
+## 🪄 MAGIC PHRASE: "codebakers go"
+When user says "codebakers go" in chat, start the onboarding conversation:
+1. Ask: "Is this an existing project or are you starting fresh?" (1=existing, 2=new)
+2. If existing: "Great! What would you like to work on?"
+3. If new: "What do you want to build? Describe your project."
+4. Then call \`init_project()\` to set up CodeBakers files
+5. Continue helping them build
 
 ## 🚨 ALWAYS DO THIS (Critical - Read First)
 1. ALWAYS call \`project_status()\` FIRST → If works show "🍪 CodeBakers is working..." / If fails show "⚠️ Not connected"
@@ -2487,10 +2519,13 @@ Or if user declines, call without fullDeploy:
 project_status()                                    → Verify connection FIRST
 discover_patterns({ task: "what you're building" }) → Get patterns BEFORE code
 validate_complete({ feature: "name", files: [...] }) → Validate BEFORE done
+coherence_audit()                                   → Check wiring & dependencies
 \`\`\`
 
+Commands: /build, /feature, /design, /status, /audit, /coherence, /upgrade
+
 Header (after project_status succeeds): 🍪 CodeBakers is working on this...
-Header (if project_status fails): ⚠️ CodeBakers not connected - run: codebakers go
+Header (if project_status fails): ⚠️ CodeBakers not connected
 Footer (after code): 🍪 **CodeBakers** | Patterns: X | TSC: ✅ | Tests: ✅
 
 ## 🚨 ALWAYS DO THIS (Critical - Repeated at End)
@@ -2499,7 +2534,10 @@ Footer (after code): 🍪 **CodeBakers** | Patterns: X | TSC: ✅ | Tests: ✅
 3. Call \`validate_complete()\` before done
 4. Show footer after code responses
 `;
-        const V6_CURSORRULES = `# CodeBakers v6.15
+        const V6_CURSORRULES = `# CodeBakers v6.18
+
+## 🪄 "codebakers go" = Start onboarding conversation
+Ask existing/new → Ask what to build → Call init_project() → Help them build
 
 ## 🚨 ALWAYS (Read First)
 1. Call project_status() FIRST → 🍪 Working... or ⚠️ Not connected
@@ -2513,30 +2551,33 @@ Footer (after code): 🍪 **CodeBakers** | Patterns: X | TSC: ✅ | Tests: ✅
 3. Show header without project_status succeeding
 4. Skip writing tests for new features
 
+Commands: /build, /feature, /design, /status, /audit, /coherence, /upgrade
+Use coherence_audit() to check wiring & dependencies
+
 ## 🚨 ALWAYS (Repeated at End)
 1. project_status() FIRST
 2. discover_patterns() before code
 3. validate_complete() before done
 `;
-        // Check if already v6.15
+        // Check if already v6.16
         const claudeMdPath = path.join(cwd, 'CLAUDE.md');
         if (fs.existsSync(claudeMdPath)) {
             const content = fs.readFileSync(claudeMdPath, 'utf-8');
-            if (content.includes('v6.15') && content.includes('discover_patterns')) {
-                results.push('✓ CodeBakers v6.15 already installed\n');
+            if ((content.includes('v6.16') || content.includes('v6.18')) && content.includes('discover_patterns')) {
+                results.push('✓ CodeBakers v6.18 already installed\n');
                 results.push('Patterns are server-enforced. Just call `discover_patterns` before coding!');
                 return {
                     content: [{ type: 'text', text: results.join('\n') }],
                 };
             }
-            results.push('⚠️ Upgrading to v6.15 (server-enforced patterns)...\n');
+            results.push('⚠️ Upgrading to v6.16 (server-enforced patterns)...\n');
         }
         try {
-            // Write v6.15 bootstrap files
+            // Write v6.16 bootstrap files
             fs.writeFileSync(claudeMdPath, V6_CLAUDE_MD);
-            results.push('✓ Created CLAUDE.md (v6.15 bootstrap)');
+            results.push('✓ Created CLAUDE.md (v6.16 bootstrap)');
             fs.writeFileSync(path.join(cwd, '.cursorrules'), V6_CURSORRULES);
-            results.push('✓ Created .cursorrules (v6.15 bootstrap)');
+            results.push('✓ Created .cursorrules (v6.16 bootstrap)');
             // Remove old .claude folder if it exists (v5 → v6 migration)
             const claudeDir = path.join(cwd, '.claude');
             if (fs.existsSync(claudeDir)) {
@@ -2581,7 +2622,7 @@ Footer (after code): 🍪 **CodeBakers** | Patterns: X | TSC: ✅ | Tests: ✅
             state.updatedAt = new Date().toISOString();
             fs.writeFileSync(stateFile, JSON.stringify(state, null, 2));
             results.push('\n---\n');
-            results.push('## ✅ CodeBakers v6.15 Installed!\n');
+            results.push('## ✅ CodeBakers v6.18 Installed!\n');
             results.push('**How it works now:**');
             results.push('1. Call `discover_patterns` before writing code');
             results.push('2. Server returns all patterns and rules');
@@ -6675,7 +6716,7 @@ ${handlers.join('\n')}
 `;
     }
     /**
-     * Update to CodeBakers v6.14 - server-enforced patterns
+     * Update to CodeBakers v6.18 - server-enforced patterns with magic phrase + coherence
      * This is the MCP equivalent of the `codebakers upgrade` CLI command
      */
     async handleUpdatePatterns(args) {
@@ -6684,9 +6725,17 @@ ${handlers.join('\n')}
         const claudeMdPath = path.join(cwd, 'CLAUDE.md');
         const claudeDir = path.join(cwd, '.claude');
         const codebakersJson = path.join(cwd, '.codebakers.json');
-        let response = `# 🔄 CodeBakers v6.15 Update\n\n`;
-        // v6.15 bootstrap content - SHORT template with rules at START and END
-        const V6_CLAUDE_MD = `# CodeBakers v6.15
+        let response = `# 🔄 CodeBakers v6.18 Update\n\n`;
+        // v6.18 bootstrap content - magic phrase + rules at START and END + coherence
+        const V6_CLAUDE_MD = `# CodeBakers v6.18
+
+## 🪄 MAGIC PHRASE: "codebakers go"
+When user says "codebakers go" in chat, start the onboarding conversation:
+1. Ask: "Is this an existing project or are you starting fresh?" (1=existing, 2=new)
+2. If existing: "Great! What would you like to work on?"
+3. If new: "What do you want to build? Describe your project."
+4. Then call \`init_project()\` to set up CodeBakers files
+5. Continue helping them build
 
 ## 🚨 ALWAYS DO THIS (Critical - Read First)
 1. ALWAYS call \`project_status()\` FIRST → If works show "🍪 CodeBakers is working..." / If fails show "⚠️ Not connected"
@@ -6705,10 +6754,13 @@ ${handlers.join('\n')}
 project_status()                                    → Verify connection FIRST
 discover_patterns({ task: "what you're building" }) → Get patterns BEFORE code
 validate_complete({ feature: "name", files: [...] }) → Validate BEFORE done
+coherence_audit()                                   → Check wiring & dependencies
 \`\`\`
 
+Commands: /build, /feature, /design, /status, /audit, /coherence, /upgrade
+
 Header (after project_status succeeds): 🍪 CodeBakers is working on this...
-Header (if project_status fails): ⚠️ CodeBakers not connected - run: codebakers go
+Header (if project_status fails): ⚠️ CodeBakers not connected
 Footer (after code): 🍪 **CodeBakers** | Patterns: X | TSC: ✅ | Tests: ✅
 
 ## 🚨 ALWAYS DO THIS (Critical - Repeated at End)
@@ -6717,7 +6769,10 @@ Footer (after code): 🍪 **CodeBakers** | Patterns: X | TSC: ✅ | Tests: ✅
 3. Call \`validate_complete()\` before done
 4. Show footer after code responses
 `;
-        const V6_CURSORRULES = `# CodeBakers v6.15
+        const V6_CURSORRULES = `# CodeBakers v6.18
+
+## 🪄 "codebakers go" = Start onboarding conversation
+Ask existing/new → Ask what to build → Call init_project() → Help them build
 
 ## 🚨 ALWAYS (Read First)
 1. Call project_status() FIRST → 🍪 Working... or ⚠️ Not connected
@@ -6731,6 +6786,9 @@ Footer (after code): 🍪 **CodeBakers** | Patterns: X | TSC: ✅ | Tests: ✅
 3. Show header without project_status succeeding
 4. Skip writing tests for new features
 
+Commands: /build, /feature, /design, /status, /audit, /coherence, /upgrade
+Use coherence_audit() to check wiring & dependencies
+
 ## 🚨 ALWAYS (Repeated at End)
 1. project_status() FIRST
 2. discover_patterns() before code
@@ -6742,7 +6800,7 @@ Footer (after code): 🍪 **CodeBakers** | Patterns: X | TSC: ✅ | Tests: ✅
             let isV6 = false;
             if (fs.existsSync(claudeMdPath)) {
                 const content = fs.readFileSync(claudeMdPath, 'utf-8');
-                isV6 = content.includes('v6.15') && content.includes('discover_patterns');
+                isV6 = content.includes('v6.16') && content.includes('discover_patterns');
             }
             if (fs.existsSync(codebakersJson)) {
                 try {
@@ -6755,10 +6813,10 @@ Footer (after code): 🍪 **CodeBakers** | Patterns: X | TSC: ✅ | Tests: ✅
             }
             response += `## Current Status\n`;
             response += `- Version: ${currentVersion || 'Unknown'}\n`;
-            response += `- v6.15 (Server-Enforced): ${isV6 ? 'Yes ✓' : 'No'}\n\n`;
+            response += `- v6.16 (Server-Enforced): ${isV6 ? 'Yes ✓' : 'No'}\n\n`;
             // Check if already on v6
             if (isV6 && !force) {
-                response += `✅ **Already on v6.15!**\n\n`;
+                response += `✅ **Already on v6.16!**\n\n`;
                 response += `Your patterns are server-enforced. Just use \`discover_patterns\` before coding.\n`;
                 response += `Use \`force: true\` to reinstall bootstrap files.\n`;
                 response += this.getUpdateNotice();
@@ -6769,12 +6827,12 @@ Footer (after code): 🍪 **CodeBakers** | Patterns: X | TSC: ✅ | Tests: ✅
                         }],
                 };
             }
-            response += `## Upgrading to v6.15...\n\n`;
-            // Write v6.15 bootstrap files
+            response += `## Upgrading to v6.16...\n\n`;
+            // Write v6.16 bootstrap files
             fs.writeFileSync(claudeMdPath, V6_CLAUDE_MD);
-            response += `✓ Updated CLAUDE.md (v6.15 bootstrap)\n`;
+            response += `✓ Updated CLAUDE.md (v6.16 bootstrap)\n`;
             fs.writeFileSync(path.join(cwd, '.cursorrules'), V6_CURSORRULES);
-            response += `✓ Updated .cursorrules (v6.15 bootstrap)\n`;
+            response += `✓ Updated .cursorrules (v6.16 bootstrap)\n`;
             // Remove old .claude folder (v5 → v6 migration)
             if (fs.existsSync(claudeDir)) {
                 try {
@@ -7950,6 +8008,650 @@ ${events.includes('call-started') ? `      case 'call-started':
         return { content: [{ type: 'text', text: response }] };
     }
     // ============================================================================
+    // COHERENCE AUDIT - Full Codebase Wiring Check
+    // ============================================================================
+    /**
+     * Full coherence audit - checks all wiring, dependencies, and connections
+     */
+    handleCoherenceAudit(args) {
+        const { focus = 'all', autoFix = false } = args;
+        const cwd = process.cwd();
+        const issues = [];
+        const stats = {
+            filesScanned: 0,
+            importsChecked: 0,
+            exportsFound: 0,
+            typesAnalyzed: 0,
+            envVarsFound: 0,
+        };
+        // Helper to extract imports from a file
+        const extractImports = (content) => {
+            const imports = [];
+            const lines = content.split('\n');
+            lines.forEach((line, i) => {
+                // Match: import { X, Y } from 'path'
+                const namedMatch = line.match(/import\s+(type\s+)?{([^}]+)}\s+from\s+['"]([^'"]+)['"]/);
+                if (namedMatch) {
+                    const isTypeOnly = !!namedMatch[1];
+                    const names = namedMatch[2].split(',').map(n => n.trim().split(' as ')[0].trim()).filter(Boolean);
+                    imports.push({ path: namedMatch[3], names, line: i + 1, isTypeOnly });
+                }
+                // Match: import X from 'path'
+                const defaultMatch = line.match(/import\s+(type\s+)?(\w+)\s+from\s+['"]([^'"]+)['"]/);
+                if (defaultMatch && !namedMatch) {
+                    imports.push({ path: defaultMatch[3], names: ['default'], line: i + 1, isTypeOnly: !!defaultMatch[1] });
+                }
+                // Match: import * as X from 'path'
+                const namespaceMatch = line.match(/import\s+\*\s+as\s+(\w+)\s+from\s+['"]([^'"]+)['"]/);
+                if (namespaceMatch) {
+                    imports.push({ path: namespaceMatch[2], names: ['*'], line: i + 1, isTypeOnly: false });
+                }
+            });
+            return imports;
+        };
+        // Helper to extract exports from a file
+        const extractExports = (content) => {
+            const exports = [];
+            // Named exports: export { X, Y }
+            const namedExportMatches = content.matchAll(/export\s+{([^}]+)}/g);
+            for (const match of namedExportMatches) {
+                const names = match[1].split(',').map(n => n.trim().split(' as ').pop()?.trim() || '').filter(Boolean);
+                exports.push(...names);
+            }
+            // Direct exports: export const/function/class/type/interface X
+            const directExportMatches = content.matchAll(/export\s+(const|let|var|function|class|type|interface|enum)\s+(\w+)/g);
+            for (const match of directExportMatches) {
+                exports.push(match[2]);
+            }
+            // Default export
+            if (content.includes('export default')) {
+                exports.push('default');
+            }
+            // Re-exports: export * from, export { X } from
+            const reExportMatches = content.matchAll(/export\s+(?:\*|{[^}]+})\s+from\s+['"]([^'"]+)['"]/g);
+            for (const match of reExportMatches) {
+                exports.push(`__reexport:${match[1]}`);
+            }
+            return exports;
+        };
+        // Helper to resolve import path to file
+        const resolveImportPath = (importPath, fromFile) => {
+            // Skip external packages
+            if (!importPath.startsWith('.') && !importPath.startsWith('@/') && !importPath.startsWith('~/')) {
+                return null;
+            }
+            // Handle @ alias (common Next.js pattern)
+            let resolvedPath = importPath;
+            if (importPath.startsWith('@/')) {
+                resolvedPath = path.join(cwd, 'src', importPath.slice(2));
+            }
+            else if (importPath.startsWith('~/')) {
+                resolvedPath = path.join(cwd, importPath.slice(2));
+            }
+            else {
+                resolvedPath = path.resolve(path.dirname(fromFile), importPath);
+            }
+            // Try different extensions
+            const extensions = ['', '.ts', '.tsx', '.js', '.jsx', '/index.ts', '/index.tsx', '/index.js'];
+            for (const ext of extensions) {
+                const fullPath = resolvedPath + ext;
+                if (fs.existsSync(fullPath) && fs.statSync(fullPath).isFile()) {
+                    return fullPath;
+                }
+            }
+            return null;
+        };
+        // Build export map for all files
+        const exportMap = new Map();
+        const importGraph = new Map(); // file -> files it imports
+        const usedExports = new Set(); // track which exports are actually used
+        const searchDirs = ['src', 'app', 'lib', 'components', 'services', 'types', 'utils', 'hooks', 'pages'];
+        const extensions = ['.ts', '.tsx', '.js', '.jsx'];
+        // First pass: collect all exports
+        const collectExports = (dir) => {
+            if (!fs.existsSync(dir))
+                return;
+            const entries = fs.readdirSync(dir, { withFileTypes: true });
+            for (const entry of entries) {
+                const fullPath = path.join(dir, entry.name);
+                if (entry.isDirectory() && !entry.name.startsWith('.') && entry.name !== 'node_modules') {
+                    collectExports(fullPath);
+                }
+                else if (entry.isFile() && extensions.some(ext => entry.name.endsWith(ext))) {
+                    try {
+                        const content = fs.readFileSync(fullPath, 'utf-8');
+                        const exports = extractExports(content);
+                        exportMap.set(fullPath, exports);
+                        stats.exportsFound += exports.length;
+                        stats.filesScanned++;
+                    }
+                    catch {
+                        // Skip unreadable files
+                    }
+                }
+            }
+        };
+        // Collect exports from all directories
+        for (const dir of searchDirs) {
+            collectExports(path.join(cwd, dir));
+        }
+        // Also check root-level files
+        try {
+            const rootEntries = fs.readdirSync(cwd, { withFileTypes: true });
+            for (const entry of rootEntries) {
+                if (entry.isFile() && extensions.some(ext => entry.name.endsWith(ext))) {
+                    const fullPath = path.join(cwd, entry.name);
+                    try {
+                        const content = fs.readFileSync(fullPath, 'utf-8');
+                        const exports = extractExports(content);
+                        exportMap.set(fullPath, exports);
+                    }
+                    catch {
+                        // Skip
+                    }
+                }
+            }
+        }
+        catch {
+            // Skip if can't read root
+        }
+        // Second pass: check imports and build graph
+        const checkImports = (dir) => {
+            if (!fs.existsSync(dir))
+                return;
+            const entries = fs.readdirSync(dir, { withFileTypes: true });
+            for (const entry of entries) {
+                const fullPath = path.join(dir, entry.name);
+                if (entry.isDirectory() && !entry.name.startsWith('.') && entry.name !== 'node_modules') {
+                    checkImports(fullPath);
+                }
+                else if (entry.isFile() && extensions.some(ext => entry.name.endsWith(ext))) {
+                    try {
+                        const content = fs.readFileSync(fullPath, 'utf-8');
+                        const imports = extractImports(content);
+                        const relativePath = path.relative(cwd, fullPath);
+                        const importedFiles = [];
+                        for (const imp of imports) {
+                            stats.importsChecked++;
+                            const resolvedPath = resolveImportPath(imp.path, fullPath);
+                            if (resolvedPath === null) {
+                                // External package or unresolvable - skip
+                                continue;
+                            }
+                            importedFiles.push(resolvedPath);
+                            // Check if file exists
+                            if (!fs.existsSync(resolvedPath)) {
+                                if (focus === 'all' || focus === 'imports') {
+                                    issues.push({
+                                        category: 'import',
+                                        severity: 'error',
+                                        file: relativePath,
+                                        line: imp.line,
+                                        message: `Import target not found: '${imp.path}'`,
+                                        fix: `Create the file or update the import path`,
+                                        autoFixable: false,
+                                    });
+                                }
+                                continue;
+                            }
+                            // Check if named imports exist in the target
+                            const targetExports = exportMap.get(resolvedPath) || [];
+                            for (const name of imp.names) {
+                                if (name === '*' || name === 'default') {
+                                    if (name === 'default' && !targetExports.includes('default')) {
+                                        if (focus === 'all' || focus === 'imports') {
+                                            issues.push({
+                                                category: 'import',
+                                                severity: 'error',
+                                                file: relativePath,
+                                                line: imp.line,
+                                                message: `No default export in '${imp.path}'`,
+                                                fix: `Add 'export default' or change to named import`,
+                                                autoFixable: false,
+                                            });
+                                        }
+                                    }
+                                    continue;
+                                }
+                                // Track that this export is used
+                                usedExports.add(`${resolvedPath}:${name}`);
+                                if (!targetExports.includes(name)) {
+                                    if (focus === 'all' || focus === 'imports') {
+                                        issues.push({
+                                            category: 'export',
+                                            severity: 'error',
+                                            file: relativePath,
+                                            line: imp.line,
+                                            message: `'${name}' is not exported from '${imp.path}'`,
+                                            fix: `Add 'export { ${name} }' to ${path.basename(resolvedPath)} or update import`,
+                                            autoFixable: false,
+                                        });
+                                    }
+                                }
+                            }
+                        }
+                        importGraph.set(fullPath, importedFiles);
+                    }
+                    catch {
+                        // Skip unreadable files
+                    }
+                }
+            }
+        };
+        // Run import checks
+        for (const dir of searchDirs) {
+            checkImports(path.join(cwd, dir));
+        }
+        // Check for circular dependencies
+        if (focus === 'all' || focus === 'circular') {
+            const visited = new Set();
+            const recursionStack = new Set();
+            const circularPaths = [];
+            const detectCircular = (file, pathStack) => {
+                if (recursionStack.has(file)) {
+                    // Found circular dependency
+                    const cycleStart = pathStack.indexOf(file);
+                    if (cycleStart !== -1) {
+                        circularPaths.push(pathStack.slice(cycleStart).concat(file));
+                    }
+                    return true;
+                }
+                if (visited.has(file))
+                    return false;
+                visited.add(file);
+                recursionStack.add(file);
+                const imports = importGraph.get(file) || [];
+                for (const imported of imports) {
+                    detectCircular(imported, [...pathStack, file]);
+                }
+                recursionStack.delete(file);
+                return false;
+            };
+            for (const file of importGraph.keys()) {
+                detectCircular(file, []);
+            }
+            // Add unique circular dependencies as issues
+            const seenCycles = new Set();
+            for (const cycle of circularPaths) {
+                const cycleKey = cycle.map(f => path.relative(cwd, f)).sort().join(' -> ');
+                if (!seenCycles.has(cycleKey)) {
+                    seenCycles.add(cycleKey);
+                    issues.push({
+                        category: 'circular',
+                        severity: 'warning',
+                        file: path.relative(cwd, cycle[0]),
+                        message: `Circular dependency: ${cycle.map(f => path.basename(f)).join(' → ')}`,
+                        fix: 'Break the cycle by extracting shared code to a separate module',
+                        autoFixable: false,
+                    });
+                }
+            }
+        }
+        // Check for dead code (unused exports)
+        if (focus === 'all' || focus === 'dead-code') {
+            for (const [file, exports] of exportMap.entries()) {
+                const relativePath = path.relative(cwd, file);
+                // Skip entry points and config files
+                if (relativePath.includes('page.tsx') ||
+                    relativePath.includes('layout.tsx') ||
+                    relativePath.includes('route.ts') ||
+                    relativePath.includes('middleware.ts') ||
+                    relativePath.endsWith('.config.ts') ||
+                    relativePath.endsWith('.config.js')) {
+                    continue;
+                }
+                for (const exp of exports) {
+                    if (exp.startsWith('__reexport:') || exp === 'default')
+                        continue;
+                    const exportKey = `${file}:${exp}`;
+                    if (!usedExports.has(exportKey)) {
+                        issues.push({
+                            category: 'dead-code',
+                            severity: 'info',
+                            file: relativePath,
+                            message: `Export '${exp}' is never imported`,
+                            fix: `Remove if unused, or verify it's used externally`,
+                            autoFixable: true,
+                        });
+                    }
+                }
+            }
+        }
+        // Check environment variables
+        if (focus === 'all' || focus === 'env') {
+            const envVarsUsed = new Set();
+            const envVarsDefined = new Set();
+            // Scan for process.env usage
+            const scanEnvUsage = (dir) => {
+                if (!fs.existsSync(dir))
+                    return;
+                const entries = fs.readdirSync(dir, { withFileTypes: true });
+                for (const entry of entries) {
+                    const fullPath = path.join(dir, entry.name);
+                    if (entry.isDirectory() && !entry.name.startsWith('.') && entry.name !== 'node_modules') {
+                        scanEnvUsage(fullPath);
+                    }
+                    else if (entry.isFile() && extensions.some(ext => entry.name.endsWith(ext))) {
+                        try {
+                            const content = fs.readFileSync(fullPath, 'utf-8');
+                            const envMatches = content.matchAll(/process\.env\.(\w+)|process\.env\[['"](\w+)['"]\]/g);
+                            for (const match of envMatches) {
+                                const varName = match[1] || match[2];
+                                envVarsUsed.add(varName);
+                                stats.envVarsFound++;
+                            }
+                        }
+                        catch {
+                            // Skip
+                        }
+                    }
+                }
+            };
+            for (const dir of searchDirs) {
+                scanEnvUsage(path.join(cwd, dir));
+            }
+            // Check .env.example and .env.local
+            const envFiles = ['.env', '.env.local', '.env.example', '.env.development'];
+            for (const envFile of envFiles) {
+                const envPath = path.join(cwd, envFile);
+                if (fs.existsSync(envPath)) {
+                    try {
+                        const content = fs.readFileSync(envPath, 'utf-8');
+                        const lines = content.split('\n');
+                        for (const line of lines) {
+                            const match = line.match(/^([A-Z][A-Z0-9_]*)=/);
+                            if (match) {
+                                envVarsDefined.add(match[1]);
+                            }
+                        }
+                    }
+                    catch {
+                        // Skip
+                    }
+                }
+            }
+            // Find env vars used but not defined
+            for (const varName of envVarsUsed) {
+                // Skip common Next.js vars
+                if (varName.startsWith('NEXT_') || varName === 'NODE_ENV')
+                    continue;
+                if (!envVarsDefined.has(varName)) {
+                    issues.push({
+                        category: 'env',
+                        severity: 'warning',
+                        file: '.env.example',
+                        message: `Environment variable '${varName}' is used but not defined in .env files`,
+                        fix: `Add ${varName}= to .env.example`,
+                        autoFixable: true,
+                    });
+                }
+            }
+            // Find env vars defined but not used
+            for (const varName of envVarsDefined) {
+                if (!envVarsUsed.has(varName) && !varName.startsWith('NEXT_')) {
+                    issues.push({
+                        category: 'env',
+                        severity: 'info',
+                        file: '.env',
+                        message: `Environment variable '${varName}' is defined but never used`,
+                        fix: 'Remove if no longer needed',
+                        autoFixable: false,
+                    });
+                }
+            }
+        }
+        // Check for Drizzle schema issues
+        if (focus === 'all' || focus === 'schema') {
+            const schemaPath = path.join(cwd, 'src', 'db', 'schema.ts');
+            const altSchemaPath = path.join(cwd, 'drizzle', 'schema.ts');
+            const schemaFile = fs.existsSync(schemaPath) ? schemaPath : fs.existsSync(altSchemaPath) ? altSchemaPath : null;
+            if (schemaFile) {
+                try {
+                    const schemaContent = fs.readFileSync(schemaFile, 'utf-8');
+                    // Extract table names
+                    const tableMatches = schemaContent.matchAll(/export\s+const\s+(\w+)\s*=\s*(?:pgTable|mysqlTable|sqliteTable)\s*\(/g);
+                    const tableNames = new Set();
+                    for (const match of tableMatches) {
+                        tableNames.add(match[1]);
+                    }
+                    // Scan for .insert(), .update(), .delete() calls on non-existent tables
+                    const scanSchemaUsage = (dir) => {
+                        if (!fs.existsSync(dir))
+                            return;
+                        const entries = fs.readdirSync(dir, { withFileTypes: true });
+                        for (const entry of entries) {
+                            const fullPath = path.join(dir, entry.name);
+                            if (entry.isDirectory() && !entry.name.startsWith('.') && entry.name !== 'node_modules') {
+                                scanSchemaUsage(fullPath);
+                            }
+                            else if (entry.isFile() && (entry.name.endsWith('.ts') || entry.name.endsWith('.tsx'))) {
+                                try {
+                                    const content = fs.readFileSync(fullPath, 'utf-8');
+                                    const relativePath = path.relative(cwd, fullPath);
+                                    // Check for db operations on tables
+                                    const opMatches = content.matchAll(/db\.(insert|update|delete|select)\((\w+)\)/g);
+                                    for (const match of opMatches) {
+                                        const tableName = match[2];
+                                        if (!tableNames.has(tableName) && !tableName.startsWith('sql')) {
+                                            issues.push({
+                                                category: 'schema',
+                                                severity: 'error',
+                                                file: relativePath,
+                                                message: `Database operation on unknown table '${tableName}'`,
+                                                fix: `Verify table exists in schema or fix the table name`,
+                                                autoFixable: false,
+                                            });
+                                        }
+                                    }
+                                }
+                                catch {
+                                    // Skip
+                                }
+                            }
+                        }
+                    };
+                    for (const dir of searchDirs) {
+                        scanSchemaUsage(path.join(cwd, dir));
+                    }
+                }
+                catch {
+                    // Skip if can't read schema
+                }
+            }
+        }
+        // Check API contracts (Next.js API routes vs fetch calls)
+        if (focus === 'all' || focus === 'api') {
+            const apiRoutes = new Map();
+            // Find all API routes
+            const apiDir = path.join(cwd, 'src', 'app', 'api');
+            const altApiDir = path.join(cwd, 'app', 'api');
+            const pagesApiDir = path.join(cwd, 'pages', 'api');
+            const scanApiRoutes = (dir, prefix = '/api') => {
+                if (!fs.existsSync(dir))
+                    return;
+                const entries = fs.readdirSync(dir, { withFileTypes: true });
+                for (const entry of entries) {
+                    const fullPath = path.join(dir, entry.name);
+                    if (entry.isDirectory()) {
+                        scanApiRoutes(fullPath, `${prefix}/${entry.name}`);
+                    }
+                    else if (entry.name === 'route.ts' || entry.name === 'route.js') {
+                        try {
+                            const content = fs.readFileSync(fullPath, 'utf-8');
+                            const methods = [];
+                            if (content.includes('export async function GET') || content.includes('export function GET'))
+                                methods.push('GET');
+                            if (content.includes('export async function POST') || content.includes('export function POST'))
+                                methods.push('POST');
+                            if (content.includes('export async function PUT') || content.includes('export function PUT'))
+                                methods.push('PUT');
+                            if (content.includes('export async function DELETE') || content.includes('export function DELETE'))
+                                methods.push('DELETE');
+                            if (content.includes('export async function PATCH') || content.includes('export function PATCH'))
+                                methods.push('PATCH');
+                            apiRoutes.set(prefix, { methods, file: path.relative(cwd, fullPath) });
+                        }
+                        catch {
+                            // Skip
+                        }
+                    }
+                }
+            };
+            scanApiRoutes(apiDir);
+            scanApiRoutes(altApiDir);
+            // Scan for fetch calls to API routes
+            const scanFetchCalls = (dir) => {
+                if (!fs.existsSync(dir))
+                    return;
+                const entries = fs.readdirSync(dir, { withFileTypes: true });
+                for (const entry of entries) {
+                    const fullPath = path.join(dir, entry.name);
+                    if (entry.isDirectory() && !entry.name.startsWith('.') && entry.name !== 'node_modules' && entry.name !== 'api') {
+                        scanFetchCalls(fullPath);
+                    }
+                    else if (entry.isFile() && (entry.name.endsWith('.ts') || entry.name.endsWith('.tsx'))) {
+                        try {
+                            const content = fs.readFileSync(fullPath, 'utf-8');
+                            const relativePath = path.relative(cwd, fullPath);
+                            // Match fetch('/api/...') or fetch(`/api/...`)
+                            const fetchMatches = content.matchAll(/fetch\s*\(\s*[`'"]([^`'"]+)[`'"]/g);
+                            for (const match of fetchMatches) {
+                                const url = match[1];
+                                if (url.startsWith('/api/')) {
+                                    // Extract base path (before query params or dynamic segments)
+                                    const basePath = url.split('?')[0].replace(/\$\{[^}]+\}/g, '[dynamic]');
+                                    // Check if this route exists
+                                    let routeFound = false;
+                                    for (const [route] of apiRoutes) {
+                                        // Simple matching - could be improved
+                                        if (basePath === route || basePath.startsWith(route + '/')) {
+                                            routeFound = true;
+                                            break;
+                                        }
+                                    }
+                                    if (!routeFound && !basePath.includes('[dynamic]')) {
+                                        issues.push({
+                                            category: 'api',
+                                            severity: 'warning',
+                                            file: relativePath,
+                                            message: `Fetch to '${url}' but no matching API route found`,
+                                            fix: `Create the API route or fix the URL`,
+                                            autoFixable: false,
+                                        });
+                                    }
+                                }
+                            }
+                        }
+                        catch {
+                            // Skip
+                        }
+                    }
+                }
+            };
+            for (const dir of ['src', 'app', 'components', 'lib']) {
+                scanFetchCalls(path.join(cwd, dir));
+            }
+        }
+        // Generate report
+        let response = `# 🔗 Coherence Audit Report\n\n`;
+        // Summary
+        const errorCount = issues.filter(i => i.severity === 'error').length;
+        const warningCount = issues.filter(i => i.severity === 'warning').length;
+        const infoCount = issues.filter(i => i.severity === 'info').length;
+        const autoFixableCount = issues.filter(i => i.autoFixable).length;
+        response += `## 📊 Summary\n\n`;
+        response += `| Metric | Value |\n`;
+        response += `|--------|-------|\n`;
+        response += `| Files scanned | ${stats.filesScanned} |\n`;
+        response += `| Imports checked | ${stats.importsChecked} |\n`;
+        response += `| Exports found | ${stats.exportsFound} |\n`;
+        response += `| 🔴 Errors | ${errorCount} |\n`;
+        response += `| 🟡 Warnings | ${warningCount} |\n`;
+        response += `| 🔵 Info | ${infoCount} |\n`;
+        response += `| 🔧 Auto-fixable | ${autoFixableCount} |\n\n`;
+        if (issues.length === 0) {
+            response += `## ✅ All Clear!\n\n`;
+            response += `No coherence issues found. Your codebase wiring is solid.\n`;
+        }
+        else {
+            // Group issues by category
+            const categories = {
+                import: [],
+                export: [],
+                type: [],
+                schema: [],
+                api: [],
+                env: [],
+                circular: [],
+                'dead-code': [],
+            };
+            for (const issue of issues) {
+                categories[issue.category].push(issue);
+            }
+            const categoryNames = {
+                import: '🔴 Broken Imports',
+                export: '🔴 Missing Exports',
+                type: '🟠 Type Mismatches',
+                schema: '🟠 Schema Issues',
+                api: '🟡 API Contract Issues',
+                env: '🟡 Environment Variables',
+                circular: '⚪ Circular Dependencies',
+                'dead-code': '🔵 Dead Code',
+            };
+            for (const [category, catIssues] of Object.entries(categories)) {
+                if (catIssues.length === 0)
+                    continue;
+                response += `## ${categoryNames[category]} (${catIssues.length})\n\n`;
+                // Show first 10 issues per category
+                const displayIssues = catIssues.slice(0, 10);
+                for (const issue of displayIssues) {
+                    response += `### \`${issue.file}${issue.line ? `:${issue.line}` : ''}\`\n`;
+                    response += `**Issue:** ${issue.message}\n`;
+                    if (issue.fix) {
+                        response += `**Fix:** ${issue.fix}${issue.autoFixable ? ' 🔧' : ''}\n`;
+                    }
+                    response += `\n`;
+                }
+                if (catIssues.length > 10) {
+                    response += `*... and ${catIssues.length - 10} more ${category} issues*\n\n`;
+                }
+            }
+        }
+        // Recommendations
+        response += `## 💡 Recommendations\n\n`;
+        if (errorCount > 0) {
+            response += `1. **Fix ${errorCount} errors first** - These will cause runtime failures\n`;
+        }
+        if (warningCount > 0) {
+            response += `2. **Review ${warningCount} warnings** - These may cause issues\n`;
+        }
+        response += `3. Run \`npx tsc --noEmit\` to verify TypeScript compiles\n`;
+        response += `4. Run your test suite to verify functionality\n`;
+        if (autoFixableCount > 0) {
+            response += `\n---\n\n`;
+            response += `**${autoFixableCount} issues can be auto-fixed.** Run \`guardian_heal\` to fix them.\n`;
+        }
+        // Save state for guardian_heal
+        const statePath = path.join(cwd, '.codebakers', 'coherence-state.json');
+        try {
+            fs.mkdirSync(path.dirname(statePath), { recursive: true });
+            fs.writeFileSync(statePath, JSON.stringify({
+                lastAudit: new Date().toISOString(),
+                focus,
+                stats,
+                issues: issues.map(i => ({
+                    ...i,
+                    // Include only auto-fixable for healing
+                })),
+                summary: { errors: errorCount, warnings: warningCount, info: infoCount, autoFixable: autoFixableCount },
+            }, null, 2));
+        }
+        catch {
+            // Ignore write errors
+        }
+        return { content: [{ type: 'text', text: response }] };
+    }
+    // ============================================================================
     // PROJECT TRACKING - Server-Side Dashboard
     // ============================================================================
     /**