@code-yeongyu/senpi 2026.7.31 → 2026.8.3

package/dist/core/pi-manifest.d.ts

@@ -0,0 +1,9 @@
+export interface PiManifest {
+    extensions?: string[];
+    skills?: string[];
+    prompts?: string[];
+    themes?: string[];
+    hooks?: string[];
+}
+export declare function readPiManifest(packageJsonPath: string): PiManifest | null;
+//# sourceMappingURL=pi-manifest.d.ts.map

package/dist/core/pi-manifest.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"pi-manifest.d.ts","sourceRoot":"","sources":["../../src/core/pi-manifest.ts"],"names":[],"mappings":"AAEA,MAAM,WAAW,UAAU;IAC1B,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;IACtB,MAAM,CAAC,EAAE,MAAM,EAAE,CAAC;IAClB,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,MAAM,CAAC,EAAE,MAAM,EAAE,CAAC;IAClB,KAAK,CAAC,EAAE,MAAM,EAAE,CAAC;CACjB;AAQD,wBAAgB,cAAc,CAAC,eAAe,EAAE,MAAM,GAAG,UAAU,GAAG,IAAI,CAkBzE"}

package/dist/core/pi-manifest.js

@@ -0,0 +1,25 @@
+import { readFileSync } from "node:fs";
+const RESOURCE_FIELDS = ["extensions", "skills", "prompts", "themes", "hooks"];
+function isObject(value) {
+    return typeof value === "object" && value !== null && !Array.isArray(value);
+}
+export function readPiManifest(packageJsonPath) {
+    try {
+        const pkg = JSON.parse(readFileSync(packageJsonPath, "utf-8"));
+        if (!isObject(pkg) || !isObject(pkg.pi)) {
+            return null;
+        }
+        const manifest = {};
+        for (const field of RESOURCE_FIELDS) {
+            const entries = pkg.pi[field];
+            if (Array.isArray(entries) && entries.every((entry) => typeof entry === "string")) {
+                manifest[field] = entries;
+            }
+        }
+        return manifest;
+    }
+    catch {
+        return null;
+    }
+}
+//# sourceMappingURL=pi-manifest.js.map

package/dist/core/pi-manifest.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"pi-manifest.js","sourceRoot":"","sources":["../../src/core/pi-manifest.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,YAAY,EAAE,MAAM,SAAS,CAAC;AAUvC,MAAM,eAAe,GAAG,CAAC,YAAY,EAAE,QAAQ,EAAE,SAAS,EAAE,QAAQ,EAAE,OAAO,CAAU,CAAC;AAExF,SAAS,QAAQ,CAAC,KAAc;IAC/B,OAAO,OAAO,KAAK,KAAK,QAAQ,IAAI,KAAK,KAAK,IAAI,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC;AAC7E,CAAC;AAED,MAAM,UAAU,cAAc,CAAC,eAAuB;IACrD,IAAI,CAAC;QACJ,MAAM,GAAG,GAAY,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC,eAAe,EAAE,OAAO,CAAC,CAAC,CAAC;QACxE,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,CAAC;YACzC,OAAO,IAAI,CAAC;QACb,CAAC;QAED,MAAM,QAAQ,GAAe,EAAE,CAAC;QAChC,KAAK,MAAM,KAAK,IAAI,eAAe,EAAE,CAAC;YACrC,MAAM,OAAO,GAAG,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC;YAC9B,IAAI,KAAK,CAAC,OAAO,CAAC,OAAO,CAAC,IAAI,OAAO,CAAC,KAAK,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,OAAO,KAAK,KAAK,QAAQ,CAAC,EAAE,CAAC;gBACnF,QAAQ,CAAC,KAAK,CAAC,GAAG,OAAO,CAAC;YAC3B,CAAC;QACF,CAAC;QACD,OAAO,QAAQ,CAAC;IACjB,CAAC;IAAC,MAAM,CAAC;QACR,OAAO,IAAI,CAAC;IACb,CAAC;AACF,CAAC","sourcesContent":["import { readFileSync } from \"node:fs\";\n\nexport interface PiManifest {\n\textensions?: string[];\n\tskills?: string[];\n\tprompts?: string[];\n\tthemes?: string[];\n\thooks?: string[];\n}\n\nconst RESOURCE_FIELDS = [\"extensions\", \"skills\", \"prompts\", \"themes\", \"hooks\"] as const;\n\nfunction isObject(value: unknown): value is Record<string, unknown> {\n\treturn typeof value === \"object\" && value !== null && !Array.isArray(value);\n}\n\nexport function readPiManifest(packageJsonPath: string): PiManifest | null {\n\ttry {\n\t\tconst pkg: unknown = JSON.parse(readFileSync(packageJsonPath, \"utf-8\"));\n\t\tif (!isObject(pkg) || !isObject(pkg.pi)) {\n\t\t\treturn null;\n\t\t}\n\n\t\tconst manifest: PiManifest = {};\n\t\tfor (const field of RESOURCE_FIELDS) {\n\t\t\tconst entries = pkg.pi[field];\n\t\t\tif (Array.isArray(entries) && entries.every((entry) => typeof entry === \"string\")) {\n\t\t\t\tmanifest[field] = entries;\n\t\t\t}\n\t\t}\n\t\treturn manifest;\n\t} catch {\n\t\treturn null;\n\t}\n}\n"]}

package/dist/core/resource-loader.d.ts

@@ -60,8 +60,14 @@ export interface ResourceLoader {
         }>;
     };
     getSystemPrompt(): string | undefined;
+    getSystemPromptSource(): {
+        path: string;
+    } | undefined;
     getAppendSystemPrompt(): string[];
     getLoadedHookSources?(): LoadedHookSources;
+    getAppendSystemPromptSources(): Array<{
+        path: string;
+    }>;
     extendResources(paths: ResourceExtensionPaths): void;
     reload(options?: ResourceLoaderReloadOptions): Promise<void>;
 }
@@ -166,11 +172,14 @@ export declare class DefaultResourceLoader implements ResourceLoader {
     private themeDiagnostics;
     private agentsFiles;
     private systemPrompt?;
+    private systemPromptSourcePath?;
     private appendSystemPrompt;
+    private appendSystemPromptSourcePaths;
     private lastSkillPaths;
     private extensionSkillSourceInfos;
     private extensionPromptSourceInfos;
     private extensionThemeSourceInfos;
+    private resourceMetadataByPath;
     private lastPromptPaths;
     private lastThemePaths;
     private globalHookSourcePaths;
@@ -199,8 +208,14 @@ export declare class DefaultResourceLoader implements ResourceLoader {
         }>;
     };
     getSystemPrompt(): string | undefined;
+    getSystemPromptSource(): {
+        path: string;
+    } | undefined;
     getAppendSystemPrompt(): string[];
     getLoadedHookSources(): LoadedHookSources;
+    getAppendSystemPromptSources(): Array<{
+        path: string;
+    }>;
     extendResources(paths: ResourceExtensionPaths): void;
     loadProjectTrustExtensions(): Promise<LoadExtensionsResult>;
     reload(options?: ResourceLoaderReloadOptions): Promise<void>;

package/dist/core/resource-loader.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"resource-loader.d.ts","sourceRoot":"","sources":["../../src/core/resource-loader.ts"],"names":[],"mappings":"AAMA,OAAO,EAAqB,KAAK,KAAK,EAAE,MAAM,qCAAqC,CAAC;AACpF,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,kBAAkB,CAAC;AAE3D,YAAY,EAAE,iBAAiB,EAAE,kBAAkB,EAAE,MAAM,kBAAkB,CAAC;AAG9E,OAAO,EAAkB,KAAK,QAAQ,EAAE,MAAM,gBAAgB,CAAC;AAc/D,OAAO,KAAK,EAIX,eAAe,EACf,oBAAoB,EACpB,iBAAiB,EACjB,MAAM,uBAAuB,CAAC;AAE/B,OAAO,EAAyB,KAAK,YAAY,EAAyB,MAAM,sBAAsB,CAAC;AACvG,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,uBAAuB,CAAC;AAE5D,OAAO,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAC;AACxD,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,aAAa,CAAC;AAKzC,MAAM,WAAW,sBAAsB;IACtC,UAAU,CAAC,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,QAAQ,EAAE,YAAY,CAAA;KAAE,CAAC,CAAC;IAC7D,WAAW,CAAC,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,QAAQ,EAAE,YAAY,CAAA;KAAE,CAAC,CAAC;IAC9D,UAAU,CAAC,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,QAAQ,EAAE,YAAY,CAAA;KAAE,CAAC,CAAC;IAC7D,SAAS,CAAC,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,QAAQ,EAAE,YAAY,CAAA;KAAE,CAAC,CAAC;CAC5D;AAED,MAAM,WAAW,2BAA2B;IAC3C,mBAAmB,CAAC,EAAE,CAAC,KAAK,EAAE;QAAE,gBAAgB,EAAE,oBAAoB,CAAA;KAAE,KAAK,OAAO,CAAC,OAAO,CAAC,CAAC;IAC9F;;;;;;;OAOG;IACH,0BAA0B,CAAC,EAAE,eAAe,CAAC;CAC7C;AAED,MAAM,WAAW,cAAc;IAC9B,aAAa,IAAI,oBAAoB,CAAC;IACtC,SAAS,IAAI;QAAE,MAAM,EAAE,KAAK,EAAE,CAAC;QAAC,WAAW,EAAE,kBAAkB,EAAE,CAAA;KAAE,CAAC;IACpE,UAAU,IAAI;QAAE,OAAO,EAAE,cAAc,EAAE,CAAC;QAAC,WAAW,EAAE,kBAAkB,EAAE,CAAA;KAAE,CAAC;IAC/E,SAAS,IAAI;QAAE,MAAM,EAAE,KAAK,EAAE,CAAC;QAAC,WAAW,EAAE,kBAAkB,EAAE,CAAA;KAAE,CAAC;IACpE,cAAc,IAAI;QAAE,WAAW,EAAE,KAAK,CAAC;YAAE,IAAI,EAAE,MAAM,CAAC;YAAC,OAAO,EAAE,MAAM,CAAA;SAAE,CAAC,CAAA;KAAE,CAAC;IAC5E,eAAe,IAAI,MAAM,GAAG,SAAS,CAAC;IACtC,qBAAqB,IAAI;QAAE,IAAI,EAAE,MAAM,CAAA;KAAE,GAAG,SAAS,CAAC;IACtD,qBAAqB,IAAI,MAAM,EAAE,CAAC;IAClC,oBAAoB,CAAC,IAAI,iBAAiB,CAAC;IAC3C,4BAA4B,IAAI,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IACxD,eAAe,CAAC,KAAK,EAAE,sBAAsB,GAAG,IAAI,CAAC;IACrD,MAAM,CAAC,OAAO,CAAC,EAAE,2BAA2B,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;CAC7D;AAmED;;;;;;GAMG;AACH,wBAAgB,4CAA4C,CAAC,UAAU,EAAE,MAAM,GAAG,MAAM,CAMvF;AA4GD,wBAAgB,uBAAuB,CAAC,OAAO,EAAE;IAChD,GAAG,EAAE,MAAM,CAAC;IACZ,QAAQ,EAAE,MAAM,CAAC;CACjB,GAAG,KAAK,CAAC;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAA;CAAE,CAAC,CAmC3C;AAED,MAAM,WAAW,4BAA4B;IAC5C,GAAG,EAAE,MAAM,CAAC;IACZ,QAAQ,EAAE,MAAM,CAAC;IACjB,eAAe,CAAC,EAAE,eAAe,CAAC;IAClC,QAAQ,CAAC,EAAE,QAAQ,CAAC;IACpB,wBAAwB,CAAC,EAAE,MAAM,EAAE,CAAC;IACpC,oBAAoB,CAAC,EAAE,MAAM,EAAE,CAAC;IAChC,6BAA6B,CAAC,EAAE,MAAM,EAAE,CAAC;IACzC,oBAAoB,CAAC,EAAE,MAAM,EAAE,CAAC;IAChC,mBAAmB,CAAC,EAAE,MAAM,EAAE,CAAC;IAC/B,kBAAkB,CAAC,EAAE,eAAe,EAAE,CAAC;IACvC,YAAY,CAAC,EAAE,OAAO,CAAC;IACvB,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,iBAAiB,CAAC,EAAE,OAAO,CAAC;IAC5B,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,cAAc,CAAC,EAAE,OAAO,CAAC;IACzB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,kBAAkB,CAAC,EAAE,MAAM,EAAE,CAAC;IAC9B,kBAAkB,CAAC,EAAE,CAAC,IAAI,EAAE,oBAAoB,KAAK,oBAAoB,CAAC;IAC1E,cAAc,CAAC,EAAE,CAAC,IAAI,EAAE;QAAE,MAAM,EAAE,KAAK,EAAE,CAAC;QAAC,WAAW,EAAE,kBAAkB,EAAE,CAAA;KAAE,KAAK;QAClF,MAAM,EAAE,KAAK,EAAE,CAAC;QAChB,WAAW,EAAE,kBAAkB,EAAE,CAAC;KAClC,CAAC;IACF,eAAe,CAAC,EAAE,CAAC,IAAI,EAAE;QAAE,OAAO,EAAE,cAAc,EAAE,CAAC;QAAC,WAAW,EAAE,kBAAkB,EAAE,CAAA;KAAE,KAAK;QAC7F,OAAO,EAAE,cAAc,EAAE,CAAC;QAC1B,WAAW,EAAE,kBAAkB,EAAE,CAAC;KAClC,CAAC;IACF,cAAc,CAAC,EAAE,CAAC,IAAI,EAAE;QAAE,MAAM,EAAE,KAAK,EAAE,CAAC;QAAC,WAAW,EAAE,kBAAkB,EAAE,CAAA;KAAE,KAAK;QAClF,MAAM,EAAE,KAAK,EAAE,CAAC;QAChB,WAAW,EAAE,kBAAkB,EAAE,CAAC;KAClC,CAAC;IACF,mBAAmB,CAAC,EAAE,CAAC,IAAI,EAAE;QAAE,WAAW,EAAE,KAAK,CAAC;YAAE,IAAI,EAAE,MAAM,CAAC;YAAC,OAAO,EAAE,MAAM,CAAA;SAAE,CAAC,CAAA;KAAE,KAAK;QAC1F,WAAW,EAAE,KAAK,CAAC;YAAE,IAAI,EAAE,MAAM,CAAC;YAAC,OAAO,EAAE,MAAM,CAAA;SAAE,CAAC,CAAC;KACtD,CAAC;CACF;AAED,qBAAa,qBAAsB,YAAW,cAAc;IAC3D,OAAO,CAAC,GAAG,CAAS;IACpB,OAAO,CAAC,QAAQ,CAAS;IACzB,OAAO,CAAC,eAAe,CAAkB;IACzC,OAAO,CAAC,QAAQ,CAAW;IAC3B,OAAO,CAAC,cAAc,CAAwB;IAC9C,OAAO,CAAC,wBAAwB,CAAW;IAC3C,OAAO,CAAC,oBAAoB,CAAW;IACvC,OAAO,CAAC,6BAA6B,CAAW;IAChD,OAAO,CAAC,oBAAoB,CAAW;IACvC,OAAO,CAAC,mBAAmB,CAAW;IACtC,OAAO,CAAC,yBAAyB,CAA4B;IAC7D,OAAO,CAAC,kBAAkB,CAAoB;IAC9C,OAAO,CAAC,YAAY,CAAU;IAC9B,OAAO,CAAC,QAAQ,CAAU;IAC1B,OAAO,CAAC,iBAAiB,CAAU;IACnC,OAAO,CAAC,QAAQ,CAAU;IAC1B,OAAO,CAAC,cAAc,CAAU;IAChC,OAAO,CAAC,kBAAkB,CAAC,CAAS;IACpC,OAAO,CAAC,wBAAwB,CAAC,CAAW;IAC5C,OAAO,CAAC,kBAAkB,CAAC,CAAuD;IAClF,OAAO,CAAC,cAAc,CAAC,CAGrB;IACF,OAAO,CAAC,eAAe,CAAC,CAGtB;IACF,OAAO,CAAC,cAAc,CAAC,CAGrB;IACF,OAAO,CAAC,mBAAmB,CAAC,CAE1B;IAEF,OAAO,CAAC,gBAAgB,CAAuB;IAC/C,OAAO,CAAC,MAAM,CAAU;IACxB,OAAO,CAAC,gBAAgB,CAAuB;IAC/C,OAAO,CAAC,OAAO,CAAmB;IAClC,OAAO,CAAC,iBAAiB,CAAuB;IAChD,OAAO,CAAC,MAAM,CAAU;IACxB,OAAO,CAAC,gBAAgB,CAAuB;IAC/C,OAAO,CAAC,WAAW,CAA2C;IAC9D,OAAO,CAAC,YAAY,CAAC,CAAS;IAC9B,OAAO,CAAC,sBAAsB,CAAC,CAAS;IACxC,OAAO,CAAC,kBAAkB,CAAW;IACrC,OAAO,CAAC,6BAA6B,CAAW;IAChD,OAAO,CAAC,cAAc,CAAW;IACjC,OAAO,CAAC,yBAAyB,CAA0B;IAC3D,OAAO,CAAC,0BAA0B,CAA0B;IAC5D,OAAO,CAAC,yBAAyB,CAA0B;IAC3D,OAAO,CAAC,sBAAsB,CAA4B;IAC1D,OAAO,CAAC,eAAe,CAAW;IAClC,OAAO,CAAC,cAAc,CAAW;IACjC,OAAO,CAAC,qBAAqB,CAAW;IACxC,OAAO,CAAC,sBAAsB,CAAW;IACzC,OAAO,CAAC,yBAAyB,CAAW;IAC5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package/dist/core/resource-loader.js

@@ -1,6 +1,6 @@
 import { existsSync, mkdirSync, readdirSync, readFileSync, realpathSync, statSync, writeFileSync } from "node:fs";
 import { createRequire } from "node:module";
-import { dirname, join, relative, resolve, sep } from "node:path";
+import { basename, dirname, join, relative, resolve, sep } from "node:path";
 import { fileURLToPath, pathToFileURL } from "node:url";
 import chalk from "chalk";
 import { CONFIG_DIR_NAME, getAgentDir, getPackageDir } from "../config.js";
@@ -9,6 +9,7 @@ import { canonicalizePath, isLocalPath, resolvePath } from "../utils/paths.js";
 import { createEventBus } from "./event-bus.js";
 import { builtinExtensions, globalDefaultExtensionFactories, globalDefaultExtensionIds, } from "./extensions/builtin/index.js";
 import { clearExtensionCache, createExtensionRuntime, loadExtensionFromFactory, loadExtensions, } from "./extensions/loader.js";
+import { findGitPaths } from "./footer-data-provider.js";
 import { DefaultPackageManager } from "./package-manager.js";
 import { loadPromptTemplates } from "./prompt-templates.js";
 import { SettingsManager } from "./settings-manager.js";
@@ -151,6 +152,35 @@ function loadContextFileFromDir(dir) {
     }
     return null;
 }
+/**
+ * The main repo's context file that a nested linked worktree's own copy shadows: both
+ * are the same tracked AGENTS.md/CLAUDE.md, so loading both loads it twice. Returns
+ * undefined when nothing is shadowed, leaving normal ancestor inheritance alone.
+ *
+ * Returned canonicalized (realpath), because `git worktree add` writes the `.git`
+ * file's `gitdir:` target in realpath form while cwd may still be symlinked
+ * (macOS `/tmp` -> `/private/tmp`).
+ */
+function findShadowedContextFile(cwd) {
+    const gitPaths = findGitPaths(cwd);
+    if (!gitPaths)
+        return undefined;
+    const commonGitDir = canonicalizePath(gitPaths.commonGitDir);
+    const worktreeRoot = canonicalizePath(gitPaths.repoDir);
+    const mainRepoRoot = dirname(commonGitDir);
+    // False for an ordinary repo, where the two are the same dir, and for a sibling
+    // worktree (`git worktree add ../feat`), whose main repo is not an ancestor.
+    if (!worktreeRoot.startsWith(`${mainRepoRoot}${sep}`))
+        return undefined;
+    // dirname of the common git dir is the main worktree root only when that dir is
+    // itself checked out from the same repo. In a bare layout (`proj/.bare` +
+    // `proj/main`) it is just the directory holding `.bare`, which tracks nothing; a
+    // submodule's gitdir has no `commondir`, so it lands under `.git/modules`.
+    if (canonicalizePath(join(mainRepoRoot, ".git")) !== commonGitDir)
+        return undefined;
+    const worktreeContextFile = loadContextFileFromDir(worktreeRoot);
+    return worktreeContextFile ? join(mainRepoRoot, basename(worktreeContextFile.path)) : undefined;
+}
 export function loadProjectContextFiles(options) {
     const resolvedCwd = resolvePath(options.cwd);
     const resolvedAgentDir = resolvePath(options.agentDir);
@@ -162,10 +192,12 @@ export function loadProjectContextFiles(options) {
         seenPaths.add(globalContext.path);
     }
     const ancestorContextFiles = [];
+    const shadowedContextFile = findShadowedContextFile(resolvedCwd);
     let currentDir = resolvedCwd;
     while (true) {
         const contextFile = loadContextFileFromDir(currentDir);
-        if (contextFile && !seenPaths.has(contextFile.path)) {
+        const isShadowed = shadowedContextFile !== undefined && canonicalizePath(contextFile?.path ?? "") === shadowedContextFile;
+        if (contextFile && !isShadowed && !seenPaths.has(contextFile.path)) {
             ancestorContextFiles.unshift(contextFile);
             seenPaths.add(contextFile.path);
         }
@@ -216,10 +248,12 @@ export class DefaultResourceLoader {
         this.themeDiagnostics = [];
         this.agentsFiles = [];
         this.appendSystemPrompt = [];
+        this.appendSystemPromptSourcePaths = [];
         this.lastSkillPaths = [];
         this.extensionSkillSourceInfos = new Map();
         this.extensionPromptSourceInfos = new Map();
         this.extensionThemeSourceInfos = new Map();
+        this.resourceMetadataByPath = new Map();
         this.lastPromptPaths = [];
         this.lastThemePaths = [];
         this.globalHookSourcePaths = [];
@@ -246,12 +280,18 @@ export class DefaultResourceLoader {
     getSystemPrompt() {
         return this.systemPrompt;
     }
+    getSystemPromptSource() {
+        return this.systemPromptSourcePath ? { path: this.systemPromptSourcePath } : undefined;
+    }
     getAppendSystemPrompt() {
         return this.appendSystemPrompt;
     }
     getLoadedHookSources() {
         return this.loadedHookSources;
     }
+    getAppendSystemPromptSources() {
+        return this.appendSystemPromptSourcePaths.map((path) => ({ path }));
+    }
     extendResources(paths) {
         const skillPaths = this.normalizeExtensionPaths(paths.skillPaths ?? []);
         const promptPaths = this.normalizeExtensionPaths(paths.promptPaths ?? []);
@@ -268,15 +308,15 @@ export class DefaultResourceLoader {
         }
         if (skillPaths.length > 0) {
             this.lastSkillPaths = this.mergePaths(this.lastSkillPaths, skillPaths.map((entry) => entry.path));
-            this.updateSkillsFromPaths(this.lastSkillPaths);
+            this.updateSkillsFromPaths(this.lastSkillPaths, this.resourceMetadataByPath);
         }
         if (promptPaths.length > 0) {
             this.lastPromptPaths = this.mergePaths(this.lastPromptPaths, promptPaths.map((entry) => entry.path));
-            this.updatePromptsFromPaths(this.lastPromptPaths);
+            this.updatePromptsFromPaths(this.lastPromptPaths, this.resourceMetadataByPath);
         }
         if (themePaths.length > 0) {
             this.lastThemePaths = this.mergePaths(this.lastThemePaths, themePaths.map((entry) => entry.path));
-            this.updateThemesFromPaths(this.lastThemePaths);
+            this.updateThemesFromPaths(this.lastThemePaths, this.resourceMetadataByPath);
         }
         if (hookPaths.length > 0) {
             const runtimeHookSourcePaths = this.mergePaths([...this.loadedHookSources.runtimeHookSourcePaths], hookPaths.map((entry) => entry.path));
@@ -312,7 +352,9 @@ export class DefaultResourceLoader {
             temporary: true,
         });
         time("packageResolve", "extensions");
-        const metadataByPath = new Map();
+        // Keep package metadata available for later extendResources() passes.
+        this.resourceMetadataByPath = new Map();
+        const metadataByPath = this.resourceMetadataByPath;
         this.extensionSkillSourceInfos = new Map();
         this.extensionPromptSourceInfos = new Map();
         this.extensionThemeSourceInfos = new Map();
@@ -438,6 +480,13 @@ export class DefaultResourceLoader {
         this.appendSystemPrompt = (this.appendSystemPromptSource ?? [])
             .map((source) => resolvePromptInput(source, "append system prompt"))
             .filter((source) => source !== undefined);
+        this.systemPromptSourcePath =
+            this.systemPromptSource && existsSync(this.systemPromptSource)
+                ? resolvePath(this.systemPromptSource)
+                : undefined;
+        this.appendSystemPromptSourcePaths = (this.appendSystemPromptSource ?? [])
+            .filter((source) => existsSync(source))
+            .map((source) => resolvePath(source));
         this.loaded = true;
     }
     ensureGlobalDefaultExtensions() {