@co-engram/core 0.1.0

package/dist/storage/repository.js.map

@@ -0,0 +1 @@
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package/dist/storage/synapse-store.d.ts

@@ -0,0 +1,113 @@
+/**
+ * Synapse per-edge 存储
+ *
+ * 设计要点:
+ * - 每条 synapse 一个 YAML 文件:`synapses/{kind}/syn-{hash}.yaml`
+ * - from/to 引用 stable id(ULID),不是路径
+ * - bidirectional 只存一次,解决对称边悖论
+ * - 同 (from, to, kind) 必同 id(确定性哈希),支持 idempotent create
+ * - evidence[] append-only,多人追加天然不冲突
+ *
+ * @module @co-engram/core/storage
+ */
+import type { EngramId, SynapseId } from "../types/engram.js";
+import type { Synapse, SynapseKind, SynapseDirection, SynapseEvidence, SynapseResolutionState } from "../types/synapse.js";
+import type { Language } from "../i18n/types.js";
+/** Synapse 文件结构(per-edge 单文件) */
+export type SynapseFile = Synapse;
+/** synapses/ 顶层目录名(与人类笔记平级) */
+export declare const SYNAPSES_DIR = "synapses";
+/**
+ * 计算 synapse 文件的相对路径(相对 dataRoot):
+ * `synapses/{kind}/syn-{hash}.yaml`
+ */
+export declare function synapseRelativePath(synapseId: SynapseId, kind: SynapseKind): string;
+/**
+ * 序列化 synapse 文件
+ *
+ * @param language `'en'`(默认)用英文字段名;`'zh'` 用中文字段名 + 追加 `__语言: zh` 标记
+ */
+export declare function serializeSynapseFile(file: SynapseFile, language?: Language): string;
+/**
+ * 解析 synapse 文件,自动归一化字段名(中/英 → 英文运行时)
+ */
+export declare function parseSynapseFile(raw: string): SynapseFile;
+/**
+ * 读取单条 synapse 文件
+ */
+export declare function readSynapseFile(filePath: string): SynapseFile;
+/**
+ * 写入 synapse 文件(自动创建父目录)
+ */
+export declare function writeSynapseFile(filePath: string, file: SynapseFile, language?: Language): void;
+/**
+ * 删除 synapse 文件
+ */
+export declare function deleteSynapseFile(filePath: string): void;
+/**
+ * 从 (from, to, kind, direction) 计算并落盘一条 synapse。
+ *
+ * 幂等性:
+ * - 同 (from, to, kind) 必同 id
+ * - 文件已存在时合并 evidence(去重),不覆盖
+ * - weight/direction 以新值为准(更新 updatedAt)
+ *
+ * @returns 写入后的 synapse 完整对象
+ */
+export declare function upsertSynapse(dataRoot: string, params: {
+    from: EngramId;
+    to: EngramId;
+    kind: SynapseKind;
+    direction?: SynapseDirection;
+    weight?: number;
+    evidence?: readonly Omit<SynapseEvidence, "addedAt">[];
+    createdBy: string;
+    sourceSemantic?: string;
+    targetSemantic?: string;
+    resolutionState?: SynapseResolutionState;
+    now?: string;
+    language?: Language;
+}): Synapse;
+/**
+ * 扫描所有 synapse 文件并返回 Synapse[]。
+ *
+ * 遍历 `synapses/{kind}/*.yaml`,按 kind 分组失败时跳过单条不阻塞整体。
+ *
+ * @param dataRoot 仓库根目录
+ * @param onCorrupt 可选回调,遇到损坏文件时调用(用于 doctor 收集 issue)
+ */
+export declare function collectAllSynapses(dataRoot: string, onCorrupt?: (filePath: string, error: Error) => void): Synapse[];
+/**
+ * 按 endpoints 查单条 synapse(确定性 ID 让 O(1))。
+ *
+ * @returns 找到的 Synapse 或 undefined
+ */
+export declare function readSynapseByEndpoints(dataRoot: string, from: EngramId, to: EngramId, kind: SynapseKind, direction?: SynapseDirection): Synapse | undefined;
+/**
+ * 按 id 查 synapse。
+ *
+ * 需要遍历所有 kind 子目录(因为 id 不包含 kind 信息,kind 由路径承载)。
+ */
+export declare function readSynapseById(dataRoot: string, synapseId: SynapseId): Synapse | undefined;
+/**
+ * 删除所有触及 engramId 的 edge(级联删除)。
+ *
+ * @returns 删除的 edge 数
+ */
+export declare function deleteSynapsesTouching(dataRoot: string, engramId: EngramId): number;
+/**
+ * 列出某 engram 的所有相关 edge(出 + 入)。
+ *
+ * bidirectional synapse 同时计入 outgoing 和 incoming(对称语义)。
+ */
+export declare function listSynapsesForEngram(dataRoot: string, engramId: EngramId): {
+    outgoing: Synapse[];
+    incoming: Synapse[];
+};
+/**
+ * 从文件名提取 synapse id。
+ *
+ * `syn-a1b2c3d4e5f67890.yaml` → `syn-a1b2c3d4e5f67890`
+ */
+export declare function extractSynapseIdFromFilename(filename: string): SynapseId | undefined;
+//# sourceMappingURL=synapse-store.d.ts.map

package/dist/storage/synapse-store.d.ts.map

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package/dist/storage/synapse-store.js

@@ -0,0 +1,279 @@
+/**
+ * Synapse per-edge 存储
+ *
+ * 设计要点:
+ * - 每条 synapse 一个 YAML 文件:`synapses/{kind}/syn-{hash}.yaml`
+ * - from/to 引用 stable id(ULID),不是路径
+ * - bidirectional 只存一次,解决对称边悖论
+ * - 同 (from, to, kind) 必同 id(确定性哈希),支持 idempotent create
+ * - evidence[] append-only,多人追加天然不冲突
+ *
+ * @module @co-engram/core/storage
+ */
+import { readFileSync, writeFileSync, mkdirSync, existsSync, unlinkSync, readdirSync, } from "node:fs";
+import { dirname, join, basename } from "node:path";
+import { parse, stringify } from "yaml";
+import { computeSynapseId, isSynapseId } from "../types/synapse-id.js";
+import { DEFAULT_LANGUAGE } from "../i18n/index.js";
+import { delocalizeSynapse, localizeSynapse } from "../i18n/field-names.js";
+/** synapses/ 顶层目录名(与人类笔记平级) */
+export const SYNAPSES_DIR = "synapses";
+/**
+ * 计算 synapse 文件的相对路径(相对 dataRoot):
+ * `synapses/{kind}/syn-{hash}.yaml`
+ */
+export function synapseRelativePath(synapseId, kind) {
+    return join(SYNAPSES_DIR, kind, `${synapseId}.yaml`);
+}
+/**
+ * 序列化 synapse 文件
+ *
+ * @param language `'en'`(默认)用英文字段名;`'zh'` 用中文字段名 + 追加 `__语言: zh` 标记
+ */
+export function serializeSynapseFile(file, language = DEFAULT_LANGUAGE) {
+    const obj = localizeSynapse(file, language, {
+        attachLangMarker: true,
+    });
+    return stringify(obj, { lineWidth: 0 });
+}
+/**
+ * 解析 synapse 文件,自动归一化字段名(中/英 → 英文运行时)
+ */
+export function parseSynapseFile(raw) {
+    const parsed = parse(raw);
+    if (!parsed || typeof parsed !== "object") {
+        throw new Error("Invalid synapse file: not an object");
+    }
+    const { normalized } = delocalizeSynapse(parsed);
+    const s = normalized;
+    if (typeof s.id !== "string" || !isSynapseId(s.id)) {
+        throw new Error(`Invalid synapse file: bad id "${s.id}"`);
+    }
+    if (typeof s.from !== "string" || typeof s.to !== "string") {
+        throw new Error("Invalid synapse file: missing from/to");
+    }
+    if (typeof s.kind !== "string") {
+        throw new Error("Invalid synapse file: missing kind");
+    }
+    return {
+        id: s.id,
+        from: s.from,
+        to: s.to,
+        kind: s.kind,
+        weight: typeof s.weight === "number" ? s.weight : 0.5,
+        direction: s.direction ?? "directional",
+        evidence: Array.isArray(s.evidence)
+            ? s.evidence
+            : [],
+        createdBy: s.createdBy ?? "",
+        createdAt: s.createdAt ?? "",
+        updatedAt: s.updatedAt ?? "",
+        retrievalWeight: typeof s.retrievalWeight === "number" ? s.retrievalWeight : 0.5,
+        sourceSemantic: s.sourceSemantic,
+        targetSemantic: s.targetSemantic,
+        resolutionState: s.resolutionState,
+    };
+}
+/**
+ * 读取单条 synapse 文件
+ */
+export function readSynapseFile(filePath) {
+    const raw = readFileSync(filePath, "utf8");
+    return parseSynapseFile(raw);
+}
+/**
+ * 写入 synapse 文件(自动创建父目录)
+ */
+export function writeSynapseFile(filePath, file, language = DEFAULT_LANGUAGE) {
+    mkdirSync(dirname(filePath), { recursive: true });
+    writeFileSync(filePath, serializeSynapseFile(file, language), "utf8");
+}
+/**
+ * 删除 synapse 文件
+ */
+export function deleteSynapseFile(filePath) {
+    if (existsSync(filePath)) {
+        unlinkSync(filePath);
+    }
+}
+/**
+ * 从 (from, to, kind, direction) 计算并落盘一条 synapse。
+ *
+ * 幂等性:
+ * - 同 (from, to, kind) 必同 id
+ * - 文件已存在时合并 evidence(去重),不覆盖
+ * - weight/direction 以新值为准(更新 updatedAt)
+ *
+ * @returns 写入后的 synapse 完整对象
+ */
+export function upsertSynapse(dataRoot, params) {
+    const now = params.now ?? new Date().toISOString();
+    const direction = params.direction ?? "directional";
+    const language = params.language ?? DEFAULT_LANGUAGE;
+    const id = computeSynapseId(params.from, params.to, params.kind, direction);
+    const relativePath = synapseRelativePath(id, params.kind);
+    const absolutePath = join(dataRoot, relativePath);
+    let existing;
+    if (existsSync(absolutePath)) {
+        try {
+            existing = readSynapseFile(absolutePath);
+        }
+        catch {
+            existing = undefined;
+        }
+    }
+    const newEvidence = (params.evidence ?? []).map((e) => ({
+        description: e.description,
+        source: e.source,
+        confidence: e.confidence,
+        addedBy: e.addedBy,
+        addedAt: now,
+    }));
+    // 合并 evidence:去重(description + addedBy 相同视为重复)
+    const evidenceMap = new Map();
+    for (const ev of existing?.evidence ?? []) {
+        evidenceMap.set(`${ev.description}|${ev.addedBy}`, ev);
+    }
+    for (const ev of newEvidence) {
+        evidenceMap.set(`${ev.description}|${ev.addedBy}`, ev);
+    }
+    const merged = {
+        id,
+        from: params.from,
+        to: params.to,
+        kind: params.kind,
+        weight: params.weight ?? existing?.weight ?? 0.5,
+        direction,
+        evidence: Array.from(evidenceMap.values()),
+        createdBy: existing?.createdBy ?? params.createdBy,
+        createdAt: existing?.createdAt ?? now,
+        updatedAt: now,
+        retrievalWeight: existing?.retrievalWeight ?? 0.5,
+        sourceSemantic: params.sourceSemantic ?? existing?.sourceSemantic,
+        targetSemantic: params.targetSemantic ?? existing?.targetSemantic,
+        resolutionState: params.resolutionState ?? existing?.resolutionState,
+    };
+    writeSynapseFile(absolutePath, merged, language);
+    return merged;
+}
+/**
+ * 扫描所有 synapse 文件并返回 Synapse[]。
+ *
+ * 遍历 `synapses/{kind}/*.yaml`,按 kind 分组失败时跳过单条不阻塞整体。
+ *
+ * @param dataRoot 仓库根目录
+ * @param onCorrupt 可选回调,遇到损坏文件时调用(用于 doctor 收集 issue)
+ */
+export function collectAllSynapses(dataRoot, onCorrupt) {
+    const root = join(dataRoot, SYNAPSES_DIR);
+    if (!existsSync(root))
+        return [];
+    const results = [];
+    for (const kindDir of readdirSync(root, { withFileTypes: true })) {
+        if (!kindDir.isDirectory())
+            continue;
+        for (const entry of readdirSync(join(root, kindDir.name), {
+            withFileTypes: true,
+        })) {
+            if (!entry.isFile())
+                continue;
+            if (!entry.name.endsWith(".yaml") && !entry.name.endsWith(".yml"))
+                continue;
+            const filePath = join(root, kindDir.name, entry.name);
+            try {
+                results.push(readSynapseFile(filePath));
+            }
+            catch (err) {
+                if (onCorrupt)
+                    onCorrupt(filePath, err instanceof Error ? err : new Error(String(err)));
+            }
+        }
+    }
+    return results;
+}
+/**
+ * 按 endpoints 查单条 synapse(确定性 ID 让 O(1))。
+ *
+ * @returns 找到的 Synapse 或 undefined
+ */
+export function readSynapseByEndpoints(dataRoot, from, to, kind, direction = "directional") {
+    const id = computeSynapseId(from, to, kind, direction);
+    const absolutePath = join(dataRoot, synapseRelativePath(id, kind));
+    if (!existsSync(absolutePath))
+        return undefined;
+    return readSynapseFile(absolutePath);
+}
+/**
+ * 按 id 查 synapse。
+ *
+ * 需要遍历所有 kind 子目录(因为 id 不包含 kind 信息,kind 由路径承载)。
+ */
+export function readSynapseById(dataRoot, synapseId) {
+    if (!isSynapseId(synapseId))
+        return undefined;
+    const root = join(dataRoot, SYNAPSES_DIR);
+    if (!existsSync(root))
+        return undefined;
+    for (const kindDir of readdirSync(root, { withFileTypes: true })) {
+        if (!kindDir.isDirectory())
+            continue;
+        const candidate = join(root, kindDir.name, `${synapseId}.yaml`);
+        if (existsSync(candidate))
+            return readSynapseFile(candidate);
+    }
+    return undefined;
+}
+/**
+ * 删除所有触及 engramId 的 edge(级联删除)。
+ *
+ * @returns 删除的 edge 数
+ */
+export function deleteSynapsesTouching(dataRoot, engramId) {
+    const all = collectAllSynapses(dataRoot);
+    let count = 0;
+    for (const syn of all) {
+        if (syn.from !== engramId && syn.to !== engramId)
+            continue;
+        const path = join(dataRoot, synapseRelativePath(syn.id, syn.kind));
+        deleteSynapseFile(path);
+        count++;
+    }
+    return count;
+}
+/**
+ * 列出某 engram 的所有相关 edge(出 + 入)。
+ *
+ * bidirectional synapse 同时计入 outgoing 和 incoming(对称语义)。
+ */
+export function listSynapsesForEngram(dataRoot, engramId) {
+    const all = collectAllSynapses(dataRoot);
+    const outgoing = [];
+    const incoming = [];
+    for (const syn of all) {
+        const touchesFrom = syn.from === engramId;
+        const touchesTo = syn.to === engramId;
+        if (syn.direction === "bidirectional") {
+            if (touchesFrom || touchesTo) {
+                outgoing.push(syn);
+                incoming.push(syn);
+            }
+        }
+        else {
+            if (touchesFrom)
+                outgoing.push(syn);
+            if (touchesTo)
+                incoming.push(syn);
+        }
+    }
+    return { outgoing, incoming };
+}
+/**
+ * 从文件名提取 synapse id。
+ *
+ * `syn-a1b2c3d4e5f67890.yaml` → `syn-a1b2c3d4e5f67890`
+ */
+export function extractSynapseIdFromFilename(filename) {
+    const base = basename(filename).replace(/\.(ya?ml)$/, "");
+    return isSynapseId(base) ? base : undefined;
+}
+//# sourceMappingURL=synapse-store.js.map

package/dist/storage/synapse-store.js.map

@@ -0,0 +1 @@
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package/dist/tools/doctor-tools.d.ts

@@ -0,0 +1,53 @@
+/**
+ * 仓库健康工具集
+ *
+ *   - engram_doctor        触发自愈扫描
+ *   - engram_list_paths    列出目录树(渐进式披露)
+ *
+ * @module @co-engram/core/tools
+ */
+import { z } from "zod";
+import type { Tool } from "./tool.js";
+export declare const EngramDoctorInputSchema: z.ZodObject<{
+    incremental: z.ZodOptional<z.ZodBoolean>;
+}, "strict", z.ZodTypeAny, {
+    incremental?: boolean | undefined;
+}, {
+    incremental?: boolean | undefined;
+}>;
+export type EngramDoctorToolInput = z.infer<typeof EngramDoctorInputSchema>;
+export interface EngramDoctorResult {
+    readonly startedAt: string;
+    readonly finishedAt: string;
+    readonly totalEngrams: number;
+    readonly totalSynapses: number;
+    readonly autoFixesApplied: number;
+    readonly pendingManualReview: number;
+    readonly issues: readonly {
+        readonly kind: string;
+        readonly stableId?: string;
+        readonly path?: string;
+        readonly message: string;
+        readonly autoFixed: boolean;
+    }[];
+}
+export declare const engramDoctorTool: Tool<EngramDoctorToolInput, EngramDoctorResult>;
+export declare const EngramListPathsInputSchema: z.ZodObject<{
+    maxDepth: z.ZodOptional<z.ZodNumber>;
+}, "strict", z.ZodTypeAny, {
+    maxDepth?: number | undefined;
+}, {
+    maxDepth?: number | undefined;
+}>;
+export type EngramListPathsToolInput = z.infer<typeof EngramListPathsInputSchema>;
+export interface PathNodeDto {
+    readonly path: string;
+    readonly engramCount: number;
+    readonly children: readonly PathNodeDto[];
+}
+export interface EngramListPathsResult {
+    readonly root: PathNodeDto;
+}
+export declare const engramListPathsTool: Tool<EngramListPathsToolInput, EngramListPathsResult>;
+export declare const ALL_DOCTOR_TOOLS: readonly Tool[];
+//# sourceMappingURL=doctor-tools.d.ts.map

package/dist/tools/doctor-tools.d.ts.map

@@ -0,0 +1 @@
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package/dist/tools/doctor-tools.js

@@ -0,0 +1,97 @@
+/**
+ * 仓库健康工具集
+ *
+ *   - engram_doctor        触发自愈扫描
+ *   - engram_list_paths    列出目录树(渐进式披露)
+ *
+ * @module @co-engram/core/tools
+ */
+import { z } from "zod";
+import { validateInput } from "./tool.js";
+// ============================================================
+// engram_doctor
+// ============================================================
+export const EngramDoctorInputSchema = z
+    .object({
+    incremental: z
+        .boolean()
+        .optional()
+        .describe("增量扫描(只比对 mtime 变化的文件);默认全量"),
+})
+    .strict();
+export const engramDoctorTool = {
+    name: "engram_doctor",
+    description: "Run a self-healing scan over the memory repo. Detects and auto-fixes: moved files (index re-pointed), title renames (re-slug + file rename), missing files (index cleared). Reports for manual review: orphan markdown without frontmatter and dangling synapse references. Returns a structured report.",
+    inputSchema: EngramDoctorInputSchema,
+    execute(input, ctx) {
+        const parsed = validateInput(EngramDoctorInputSchema, input);
+        if (!ctx.repository) {
+            throw new Error("engram_doctor requires a Repository — inject `repository` into ToolContext");
+        }
+        const report = ctx.repository.runDoctor({
+            incremental: parsed.incremental,
+        });
+        return {
+            startedAt: report.startedAt,
+            finishedAt: report.finishedAt,
+            totalEngrams: report.totalEngrams,
+            totalSynapses: report.totalSynapses,
+            autoFixesApplied: report.fixes.length,
+            pendingManualReview: report.pendingManualReview.length,
+            issues: [...report.fixes, ...report.pendingManualReview].map((i) => ({
+                kind: i.kind,
+                stableId: i.stableId,
+                path: i.path,
+                message: i.message,
+                autoFixed: i.autoFixed,
+            })),
+        };
+    },
+};
+// ============================================================
+// engram_list_paths
+// ============================================================
+export const EngramListPathsInputSchema = z
+    .object({
+    maxDepth: z
+        .number()
+        .int()
+        .positive()
+        .max(10)
+        .optional()
+        .describe("目录树最大深度(默认 5)"),
+})
+    .strict();
+export const engramListPathsTool = {
+    name: "engram_list_paths",
+    description: "List the physical directory tree of the memory repo (human-organized paths). Each node carries an engramCount (cumulative subtree count). Used for progressive disclosure: the LLM can see where current work is concentrated before searching.",
+    inputSchema: EngramListPathsInputSchema,
+    execute(input, ctx) {
+        validateInput(EngramListPathsInputSchema, input);
+        if (!ctx.repository) {
+            throw new Error("engram_list_paths requires a Repository — inject `repository` into ToolContext");
+        }
+        const tree = ctx.repository.listPathTree();
+        return {
+            root: pruneTree(tree, input.maxDepth ?? 5, 0),
+        };
+    },
+};
+function pruneTree(node, maxDepth, currentDepth) {
+    const children = currentDepth + 1 >= maxDepth
+        ? []
+        : node.children.map((c) => pruneTree(c, maxDepth, currentDepth + 1));
+    return {
+        path: node.path,
+        engramCount: node.engramCount,
+        children,
+    };
+}
+// ============================================================
+// 注册
+// ============================================================
+export const ALL_DOCTOR_TOOLS = [
+    engramDoctorTool,
+    engramListPathsTool,
+];
+//# sourceMappingURL=doctor-tools.js.map

package/dist/tools/doctor-tools.js.map

@@ -0,0 +1 @@
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