@cmdcolin/jbrowse-plugin-hubs 1.0.5 → 1.0.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/dist/index.js
CHANGED
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@@ -35,7 +35,7 @@ export default class HubsViewerPlugin extends Plugin {
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const connectionId = `jb2hub-${assemblyName}`;
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if (!session.connections.find(f => f.connectionId === connectionId)) {
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const conf = {
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-
type: '
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type: 'JB2TrackHubConnection',
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uri,
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name: `conn_${assemblyName}`,
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assemblyNames: [assemblyName],
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package/dist/index.js.map
CHANGED
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@@ -1 +1 @@
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1
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-
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{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,MAAM,MAAM,sBAAsB,CAAA;AAGzC,OAAO,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AAQzC,SAAS,kBAAkB,CAAC,SAAiB;IAC3C,MAAM,CAAC,IAAI,EAAE,IAAI,CAAC,GAAG,SAAS,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;IACzC,IAAI,CAAC,IAAI,EAAE,CAAC;QACV,OAAO,SAAS,CAAA;IAClB,CAAC;IACD,MAAM,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC,SAAS,CAAC,CAAA;IACnC,IAAI,CAAC,KAAK,IAAI,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC/B,OAAO,SAAS,CAAA;IAClB,CAAC;IACD,MAAM,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC,GAAG,KAAK,CAAA;IAC1B,OAAO,mCAAmC,IAAI,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,SAAS,cAAc,CAAA;AAC7F,CAAC;AAED,SAAS,YAAY,CAAC,YAAoB;IACxC,IAAI,YAAY,CAAC,UAAU,CAAC,MAAM,CAAC,IAAI,YAAY,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,CAAC;QACvE,OAAO,kBAAkB,CAAC,YAAY,CAAC,CAAA;IACzC,CAAC;IACD,OAAO,4BAA4B,YAAY,cAAc,CAAA;AAC/D,CAAC;AAED,MAAM,CAAC,OAAO,OAAO,gBAAiB,SAAQ,MAAM;IAClD,IAAI,GAAG,kBAAkB,CAAA;IACzB,OAAO,GAAG,OAAO,CAAA;IAEjB,OAAO,CAAC,aAA4B;QAClC,aAAa,CAAC,mBAAmB,CAC/B,iCAAiC,EACjC,CAAC,cAAc,EAAE,IAAI,EAAE,EAAE;YACvB,MAAM,OAAO,GAAG,IAAI,CAAC,OAA8B,CAAA;YACnD,MAAM,YAAY,GAAG,IAAI,CAAC,YAAkC,CAAA;YAC5D,IAAI,CAAC,OAAO,IAAI,CAAC,YAAY,EAAE,CAAC;gBAC9B,OAAM;YACR,CAAC;YACD,MAAM,GAAG,GAAG,YAAY,CAAC,YAAY,CAAC,CAAA;YACtC,IAAI,CAAC,GAAG,EAAE,CAAC;gBACT,OAAM;YACR,CAAC;YACD,MAAM,YAAY,GAAG,UAAU,YAAY,EAAE,CAAA;YAC7C,IAAI,CAAC,OAAO,CAAC,WAAW,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,YAAY,KAAK,YAAY,CAAC,EAAE,CAAC;gBACpE,MAAM,IAAI,GAAG;oBACX,IAAI,EAAE,uBAAuB;oBAC7B,GAAG;oBACH,IAAI,EAAE,QAAQ,YAAY,EAAE;oBAC5B,aAAa,EAAE,CAAC,YAAY,CAAC;oBAC7B,YAAY;iBACb,CAAA;gBACD,OAAO,CAAC,iBAAiB,CAAC,IAAI,CAAC,CAAA;gBAC/B,OAAO,CAAC,cAAc,CAAC,IAAI,CAAC,CAAA;YAC9B,CAAC;QACH,CAAC,CACF,CAAA;IACH,CAAC;IAED,SAAS,CAAC,cAA6B,IAAG,CAAC;CAC5C"}
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@@ -1,2 +1,2 @@
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1
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"use strict";var JBrowsePluginHubs=(()=>{var b=Object.create;var a=Object.defineProperty;var j=Object.getOwnPropertyDescriptor;var w=Object.getOwnPropertyNames;var h=Object.getPrototypeOf,x=Object.prototype.hasOwnProperty;var y=(n,e)=>()=>(e||n((e={exports:{}}).exports,e),e.exports),C=(n,e)=>{for(var t in e)a(n,t,{get:e[t],enumerable:!0})},l=(n,e,t,i)=>{if(e&&typeof e=="object"||typeof e=="function")for(let s of w(e))!x.call(n,s)&&s!==t&&a(n,s,{get:()=>e[s],enumerable:!(i=j(e,s))||i.enumerable});return n};var k=(n,e,t)=>(t=n!=null?b(h(n)):{},l(e||!n||!n.__esModule?a(t,"default",{value:n,enumerable:!0}):t,n)),v=n=>l(a({},"__esModule",{value:!0}),n);var p=y((I,g)=>{g.exports=JBrowseExports["@jbrowse/core/Plugin"]});var M={};C(M,{default:()=>d});var m=k(p());var f="1.0.
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"use strict";var JBrowsePluginHubs=(()=>{var b=Object.create;var a=Object.defineProperty;var j=Object.getOwnPropertyDescriptor;var w=Object.getOwnPropertyNames;var h=Object.getPrototypeOf,x=Object.prototype.hasOwnProperty;var y=(n,e)=>()=>(e||n((e={exports:{}}).exports,e),e.exports),C=(n,e)=>{for(var t in e)a(n,t,{get:e[t],enumerable:!0})},l=(n,e,t,i)=>{if(e&&typeof e=="object"||typeof e=="function")for(let s of w(e))!x.call(n,s)&&s!==t&&a(n,s,{get:()=>e[s],enumerable:!(i=j(e,s))||i.enumerable});return n};var k=(n,e,t)=>(t=n!=null?b(h(n)):{},l(e||!n||!n.__esModule?a(t,"default",{value:n,enumerable:!0}):t,n)),v=n=>l(a({},"__esModule",{value:!0}),n);var p=y((I,g)=>{g.exports=JBrowseExports["@jbrowse/core/Plugin"]});var M={};C(M,{default:()=>d});var m=k(p());var f="1.0.6";function _(n){let[e,t]=n.split("_");if(!t)return;let i=t.match(/.{1,3}/g);if(!i||i.length<3)return;let[s,o,r]=i;return`https://jbrowse.org/hubs/genark/${e}/${s}/${o}/${r}/${n}/config.json`}function P(n){return n.startsWith("GCA_")||n.startsWith("GCF_")?_(n):`https://jbrowse.org/ucsc/${n}/config.json`}var d=class extends m.default{name="HubsViewerPlugin";version=f;install(e){e.addToExtensionPoint("Core-handleUnrecognizedAssembly",(t,i)=>{let s=i.session,o=i.assemblyName;if(!s||!o)return;let r=P(o);if(!r)return;let u=`jb2hub-${o}`;if(!s.connections.find(c=>c.connectionId===u)){let c={type:"JB2TrackHubConnection",uri:r,name:`conn_${o}`,assemblyNames:[o],connectionId:u};s.addConnectionConf(c),s.makeConnection(c)}})}configure(e){}};return v(M);})();
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//# sourceMappingURL=jbrowse-plugin-hubs.umd.production.min.js.map
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@@ -1,7 +1,7 @@
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{
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"version": 3,
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"sources": ["global-externals:@jbrowse/core/Plugin", "../src/index.ts", "../package.json"],
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"sourcesContent": ["module.exports = JBrowseExports[\"@jbrowse/core/Plugin\"];", "import Plugin from '@jbrowse/core/Plugin'\nimport PluginManager from '@jbrowse/core/PluginManager'\n\nimport { version } from '../package.json'\n\ninterface Session {\n makeConnection: (conf: unknown) => void\n addConnectionConf: (conf: unknown) => void\n connections: { connectionId: string }[]\n}\n\nfunction getGenArkConfigUrl(accession: string) {\n const [base, rest] = accession.split('_')\n if (!rest) {\n return undefined\n }\n const match = rest.match(/.{1,3}/g)\n if (!match || match.length < 3) {\n return undefined\n }\n const [b1, b2, b3] = match\n return `https://jbrowse.org/hubs/genark/${base}/${b1}/${b2}/${b3}/${accession}/config.json`\n}\n\nfunction getConfigUrl(assemblyName: string) {\n if (assemblyName.startsWith('GCA_') || assemblyName.startsWith('GCF_')) {\n return getGenArkConfigUrl(assemblyName)\n }\n return `https://jbrowse.org/ucsc/${assemblyName}/config.json`\n}\n\nexport default class HubsViewerPlugin extends Plugin {\n name = 'HubsViewerPlugin'\n version = version\n\n install(pluginManager: PluginManager) {\n pluginManager.addToExtensionPoint(\n 'Core-handleUnrecognizedAssembly',\n (_defaultResult, args) => {\n const session = args.session as Session | undefined\n const assemblyName = args.assemblyName as string | undefined\n if (!session || !assemblyName) {\n return\n }\n const uri = getConfigUrl(assemblyName)\n if (!uri) {\n return\n }\n const connectionId = `jb2hub-${assemblyName}`\n if (!session.connections.find(f => f.connectionId === connectionId)) {\n const conf = {\n type: '
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-
"mappings": "gpBAAA,IAAAA,EAAAC,EAAA,CAAAC,EAAAC,IAAA,CAAAA,EAAO,QAAU,eAAe,sBAAsB,ICAtD,IAAAC,EAAA,GAAAC,EAAAD,EAAA,aAAAE,IAAA,IAAAC,EAAmB,OCCjB,IAAAC,EAAW,QDUb,SAASC,EAAmBC,EAAmB,CAC7C,GAAM,CAACC,EAAMC,CAAI,EAAIF,EAAU,MAAM,GAAG,EACxC,GAAI,CAACE,EACH,OAEF,IAAMC,EAAQD,EAAK,MAAM,SAAS,EAClC,GAAI,CAACC,GAASA,EAAM,OAAS,EAC3B,OAEF,GAAM,CAACC,EAAIC,EAAIC,CAAE,EAAIH,EACrB,MAAO,mCAAmCF,CAAI,IAAIG,CAAE,IAAIC,CAAE,IAAIC,CAAE,IAAIN,CAAS,cAC/E,CAEA,SAASO,EAAaC,EAAsB,CAC1C,OAAIA,EAAa,WAAW,MAAM,GAAKA,EAAa,WAAW,MAAM,EAC5DT,EAAmBS,CAAY,EAEjC,4BAA4BA,CAAY,cACjD,CAEA,IAAqBC,EAArB,cAA8C,EAAAC,OAAO,CACnD,KAAO,mBACP,QAAUC,EAEV,QAAQC,EAA8B,CACpCA,EAAc,oBACZ,kCACA,CAACC,EAAgBC,IAAS,CACxB,IAAMC,EAAUD,EAAK,QACfN,EAAeM,EAAK,aAC1B,GAAI,CAACC,GAAW,CAACP,EACf,OAEF,IAAMQ,EAAMT,EAAaC,CAAY,EACrC,GAAI,CAACQ,EACH,OAEF,IAAMC,EAAe,UAAUT,CAAY,GAC3C,GAAI,CAACO,EAAQ,YAAY,KAAKG,GAAKA,EAAE,eAAiBD,CAAY,EAAG,CACnE,IAAME,EAAO,CACX,KAAM,
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"sourcesContent": ["module.exports = JBrowseExports[\"@jbrowse/core/Plugin\"];", "import Plugin from '@jbrowse/core/Plugin'\nimport PluginManager from '@jbrowse/core/PluginManager'\n\nimport { version } from '../package.json'\n\ninterface Session {\n makeConnection: (conf: unknown) => void\n addConnectionConf: (conf: unknown) => void\n connections: { connectionId: string }[]\n}\n\nfunction getGenArkConfigUrl(accession: string) {\n const [base, rest] = accession.split('_')\n if (!rest) {\n return undefined\n }\n const match = rest.match(/.{1,3}/g)\n if (!match || match.length < 3) {\n return undefined\n }\n const [b1, b2, b3] = match\n return `https://jbrowse.org/hubs/genark/${base}/${b1}/${b2}/${b3}/${accession}/config.json`\n}\n\nfunction getConfigUrl(assemblyName: string) {\n if (assemblyName.startsWith('GCA_') || assemblyName.startsWith('GCF_')) {\n return getGenArkConfigUrl(assemblyName)\n }\n return `https://jbrowse.org/ucsc/${assemblyName}/config.json`\n}\n\nexport default class HubsViewerPlugin extends Plugin {\n name = 'HubsViewerPlugin'\n version = version\n\n install(pluginManager: PluginManager) {\n pluginManager.addToExtensionPoint(\n 'Core-handleUnrecognizedAssembly',\n (_defaultResult, args) => {\n const session = args.session as Session | undefined\n const assemblyName = args.assemblyName as string | undefined\n if (!session || !assemblyName) {\n return\n }\n const uri = getConfigUrl(assemblyName)\n if (!uri) {\n return\n }\n const connectionId = `jb2hub-${assemblyName}`\n if (!session.connections.find(f => f.connectionId === connectionId)) {\n const conf = {\n type: 'JB2TrackHubConnection',\n uri,\n name: `conn_${assemblyName}`,\n assemblyNames: [assemblyName],\n connectionId,\n }\n session.addConnectionConf(conf)\n session.makeConnection(conf)\n }\n },\n )\n }\n\n configure(_pluginManager: PluginManager) {}\n}\n", "{\n \"version\": \"1.0.6\",\n \"license\": \"MIT\",\n \"name\": \"@cmdcolin/jbrowse-plugin-hubs\",\n \"keywords\": [\n \"jbrowse\",\n \"jbrowse2\"\n ],\n \"main\": \"dist/index.js\",\n \"module\": \"dist/index.esm.js\",\n \"typings\": \"dist/index.d.ts\",\n \"files\": [\n \"dist\",\n \"src\"\n ],\n \"scripts\": {\n \"clean\": \"rimraf dist\",\n \"start\": \"node esbuild.mjs --watch\",\n \"test\": \"echo 'no tests'\",\n \"format\": \"prettier --write .\",\n \"prebuild\": \"yarn clean\",\n \"build\": \"tsc && NODE_ENV=production node esbuild.mjs\",\n \"lint\": \"eslint --report-unused-disable-directives --max-warnings 0\",\n \"prepack\": \"yarn build\",\n \"postversion\": \"git push --follow-tags\"\n },\n \"devDependencies\": {\n \"@eslint/js\": \"^9.39.2\",\n \"@fal-works/esbuild-plugin-global-externals\": \"^2.1.2\",\n \"@jbrowse/core\": \"^4.1.3\",\n \"@jbrowse/mobx-state-tree\": \"^5.0.2\",\n \"@mui/material\": \"^7.3.7\",\n \"@mui/system\": \"^7.3.7\",\n \"@mui/x-data-grid\": \"^8.26.0\",\n \"@types/node\": \"^25.1.0\",\n \"@types/react\": \"^19.2.10\",\n \"esbuild\": \"^0.27.2\",\n \"eslint\": \"^9.39.2\",\n \"eslint-plugin-import\": \"^2.31.0\",\n \"eslint-plugin-unicorn\": \"^62.0.0\",\n \"mobx\": \"^6.0.0\",\n \"mobx-react\": \"^9.0.1\",\n \"prettier\": \"^3.8.1\",\n \"pretty-bytes\": \"^7.0.0\",\n \"react\": \"^19.2.4\",\n \"react-dom\": \"^19.2.4\",\n \"rimraf\": \"^6.1.2\",\n \"rxjs\": \"^7.8.1\",\n \"serve\": \"^14.2.0\",\n \"typescript\": \"^5.1.6\",\n \"typescript-eslint\": \"^8.54.0\"\n },\n \"publishConfig\": {\n \"access\": \"public\"\n }\n}\n"],
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"mappings": "gpBAAA,IAAAA,EAAAC,EAAA,CAAAC,EAAAC,IAAA,CAAAA,EAAO,QAAU,eAAe,sBAAsB,ICAtD,IAAAC,EAAA,GAAAC,EAAAD,EAAA,aAAAE,IAAA,IAAAC,EAAmB,OCCjB,IAAAC,EAAW,QDUb,SAASC,EAAmBC,EAAmB,CAC7C,GAAM,CAACC,EAAMC,CAAI,EAAIF,EAAU,MAAM,GAAG,EACxC,GAAI,CAACE,EACH,OAEF,IAAMC,EAAQD,EAAK,MAAM,SAAS,EAClC,GAAI,CAACC,GAASA,EAAM,OAAS,EAC3B,OAEF,GAAM,CAACC,EAAIC,EAAIC,CAAE,EAAIH,EACrB,MAAO,mCAAmCF,CAAI,IAAIG,CAAE,IAAIC,CAAE,IAAIC,CAAE,IAAIN,CAAS,cAC/E,CAEA,SAASO,EAAaC,EAAsB,CAC1C,OAAIA,EAAa,WAAW,MAAM,GAAKA,EAAa,WAAW,MAAM,EAC5DT,EAAmBS,CAAY,EAEjC,4BAA4BA,CAAY,cACjD,CAEA,IAAqBC,EAArB,cAA8C,EAAAC,OAAO,CACnD,KAAO,mBACP,QAAUC,EAEV,QAAQC,EAA8B,CACpCA,EAAc,oBACZ,kCACA,CAACC,EAAgBC,IAAS,CACxB,IAAMC,EAAUD,EAAK,QACfN,EAAeM,EAAK,aAC1B,GAAI,CAACC,GAAW,CAACP,EACf,OAEF,IAAMQ,EAAMT,EAAaC,CAAY,EACrC,GAAI,CAACQ,EACH,OAEF,IAAMC,EAAe,UAAUT,CAAY,GAC3C,GAAI,CAACO,EAAQ,YAAY,KAAKG,GAAKA,EAAE,eAAiBD,CAAY,EAAG,CACnE,IAAME,EAAO,CACX,KAAM,wBACN,IAAAH,EACA,KAAM,QAAQR,CAAY,GAC1B,cAAe,CAACA,CAAY,EAC5B,aAAAS,CACF,EACAF,EAAQ,kBAAkBI,CAAI,EAC9BJ,EAAQ,eAAeI,CAAI,CAC7B,CACF,CACF,CACF,CAEA,UAAUC,EAA+B,CAAC,CAC5C",
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"names": ["require_Plugin", "__commonJSMin", "exports", "module", "index_exports", "__export", "HubsViewerPlugin", "import_Plugin", "version", "getGenArkConfigUrl", "accession", "base", "rest", "match", "b1", "b2", "b3", "getConfigUrl", "assemblyName", "HubsViewerPlugin", "Plugin", "version", "pluginManager", "_defaultResult", "args", "session", "uri", "connectionId", "f", "conf", "_pluginManager"]
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}
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package/package.json
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package/src/index.ts
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const connectionId = `jb2hub-${assemblyName}`
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if (!session.connections.find(f => f.connectionId === connectionId)) {
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const conf = {
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type: '
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type: 'JB2TrackHubConnection',
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uri,
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name: `conn_${assemblyName}`,
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assemblyNames: [assemblyName],
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