@cluesmith/codev 2.1.0 → 2.1.2

package/dist/commands/porch/protocol.js

@@ -119,12 +119,23 @@ function normalizeProtocol(json) {
             }
         }
     }
+    // Extract phase_completion checks (string predicates)
+    let phase_completion;
+    if (obj.phase_completion && typeof obj.phase_completion === 'object') {
+        phase_completion = {};
+        for (const [name, val] of Object.entries(obj.phase_completion)) {
+            if (typeof val === 'string') {
+                phase_completion[name] = val;
+            }
+        }
+    }
     return {
         name: obj.name,
         version: obj.version,
         description: obj.description,
         phases,
         checks,
+        phase_completion,
     };
 }
 /**
@@ -219,17 +230,54 @@ export function getNextPhase(protocol, currentPhaseId) {
     return getPhaseConfig(protocol, current.next);
 }
 /**
- * Get check definitions for a phase
+ * Get check definitions for a phase, optionally merging in af-config.json overrides.
+ *
+ * Override semantics (applied per check name):
+ *   - skip: true   → check is omitted from the result
+ *   - command set  → replaces the protocol's command
+ *   - cwd set      → replaces the protocol's cwd
+ *
+ * Unknown override names (not found in this phase's check list) are warned
+ * via a chalk.yellow log line. All existing call sites that pass no overrides
+ * continue to work unchanged.
  */
-export function getPhaseChecks(protocol, phaseId) {
+export function getPhaseChecks(protocol, phaseId, overrides) {
     const phase = getPhaseConfig(protocol, phaseId);
     if (!phase || !phase.checks) {
         return {};
     }
+    // Warn about override keys that don't exist anywhere in the protocol.
+    // Keys valid in other phases or phase_completion are silently accepted here.
+    if (overrides) {
+        const phaseNames = new Set(phase.checks);
+        const allProtocolChecks = new Set([
+            ...Object.keys(protocol.checks ?? {}),
+            ...Object.keys(protocol.phase_completion ?? {}),
+        ]);
+        for (const name of Object.keys(overrides)) {
+            if (phaseNames.has(name))
+                continue; // In this phase — normal case
+            if (allProtocolChecks.has(name))
+                continue; // Valid elsewhere in protocol
+            process.stderr.write(`\x1b[33m  ⚠ Unknown check override "${name}" (not found in protocol)\x1b[0m\n`);
+        }
+    }
     const result = {};
     for (const checkName of phase.checks) {
-        if (protocol.checks?.[checkName]) {
-            result[checkName] = protocol.checks[checkName];
+        const base = protocol.checks?.[checkName];
+        if (!base)
+            continue;
+        const override = overrides?.[checkName];
+        if (override) {
+            if (override.skip)
+                continue; // Omit this check
+            result[checkName] = {
+                command: override.command ?? base.command,
+                cwd: override.cwd ?? base.cwd,
+            };
+        }
+        else {
+            result[checkName] = base;
         }
     }
     return result;
@@ -249,10 +297,42 @@ export function isPhased(protocol, phaseId) {
     return phase?.type === 'per_plan_phase';
 }
 /**
- * Get checks to run when a plan phase completes (after evaluate stage)
+ * Get checks to run when a plan phase completes (after evaluate stage).
+ *
+ * Accepts optional overrides from af-config.json:
+ *   - skip: true   → condition removed from gating (does NOT auto-pass)
+ *   - command set  → replaces the protocol's command string
+ *
+ * Note: phase_completion checks are simple string predicates, not CheckDef
+ * objects. Skipping one removes that gating condition entirely.
  */
-export function getPhaseCompletionChecks(protocol) {
-    return protocol.phase_completion ?? {};
+export function getPhaseCompletionChecks(protocol, overrides) {
+    const base = protocol.phase_completion ?? {};
+    if (!overrides)
+        return base;
+    // Warn about override keys that don't exist anywhere in the protocol.
+    const allProtocolChecks = new Set([
+        ...Object.keys(protocol.checks ?? {}),
+        ...Object.keys(protocol.phase_completion ?? {}),
+    ]);
+    for (const name of Object.keys(overrides)) {
+        if (allProtocolChecks.has(name))
+            continue;
+        process.stderr.write(`\x1b[33m  ⚠ Unknown check override "${name}" (not found in protocol)\x1b[0m\n`);
+    }
+    const result = {};
+    for (const [name, command] of Object.entries(base)) {
+        const override = overrides[name];
+        if (override?.skip)
+            continue; // Remove this gating condition
+        if (override?.command) {
+            result[name] = override.command;
+        }
+        else {
+            result[name] = command;
+        }
+    }
+    return result;
 }
 /**
  * Check if a phase uses the build-verify cycle.

package/dist/commands/porch/protocol.js.map

@@ -1 +1 @@
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package/dist/commands/porch/types.d.ts

@@ -48,6 +48,17 @@ export interface CheckDef {
     command: string;
     cwd?: string;
 }
+/**
+ * Per-check override from af-config.json porch.checks section.
+ * Any or all fields may be specified; absent fields use the protocol default.
+ */
+export interface CheckOverride {
+    command?: string;
+    cwd?: string;
+    skip?: boolean;
+}
+/** Map of check name → override, from af-config.json `porch.checks` */
+export type CheckOverrides = Record<string, CheckOverride>;
 /**
  * Protocol definition (loaded from protocol.json)
  */

package/dist/commands/porch/types.d.ts.map

@@ -1 +1 @@
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package/dist/lib/github.d.ts

@@ -76,6 +76,7 @@ export interface MergedPR {
     createdAt: string;
     mergedAt: string;
     body: string;
+    headRefName: string;
 }
 export interface ClosedIssue {
     number: number;
@@ -98,6 +99,18 @@ export declare function fetchMergedPRs(since: string | null, cwd?: string): Prom
  * Returns null on failure.
  */
 export declare function fetchClosedIssues(since: string | null, cwd?: string): Promise<ClosedIssue[] | null>;
+/**
+ * Fetch the "On it!" comment timestamp for multiple issues using GraphQL.
+ *
+ * Uses a batched GraphQL query via `gh api graphql` to fetch comments for
+ * many issues in a single API call. Finds the first comment containing
+ * "On it!" (posted by `af spawn`). Returns a map of issue number → ISO timestamp.
+ * Issues without an "On it!" comment are omitted from the result.
+ *
+ * Batches in groups of 50 to stay within GraphQL complexity limits.
+ * For 100 issues, this makes 2 API calls instead of 100.
+ */
+export declare function fetchOnItTimestamps(issueNumbers: number[], cwd?: string): Promise<Map<number, string>>;
 /**
  * Parse a linked issue number from a PR body and title.
  *

package/dist/lib/github.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"github.d.ts","sourceRoot":"","sources":["../../src/lib/github.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAWH,MAAM,WAAW,WAAW;IAC1B,KAAK,EAAE,MAAM,CAAC;IACd,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,KAAK,CAAC;QACd,IAAI,EAAE,MAAM,CAAC;QACb,SAAS,EAAE,MAAM,CAAC;QAClB,MAAM,EAAE;YAAE,KAAK,EAAE,MAAM,CAAA;SAAE,CAAC;KAC3B,CAAC,CAAC;CACJ;AAED,MAAM,WAAW,QAAQ;IACvB,MAAM,EAAE,MAAM,CAAC;IACf,KAAK,EAAE,MAAM,CAAC;IACd,GAAG,EAAE,MAAM,CAAC;IACZ,cAAc,EAAE,MAAM,CAAC;IACvB,IAAI,EAAE,MAAM,CAAC;IACb,SAAS,EAAE,MAAM,CAAC;IAClB,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,mBAAmB;IAClC,MAAM,EAAE,MAAM,CAAC;IACf,KAAK,EAAE,MAAM,CAAC;IACd,GAAG,EAAE,MAAM,CAAC;IACZ,MAAM,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IAChC,SAAS,EAAE,MAAM,CAAC;IAClB,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB;AAMD;;;GAGG;AACH,wBAAsB,gBAAgB,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,WAAW,GAAG,IAAI,CAAC,CAUvF;AAED;;;GAGG;AACH,wBAAsB,uBAAuB,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,WAAW,CAAC,CAMvF;AAED;;;;GAIG;AACH,wBAAsB,WAAW,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,EAAE,GAAG,IAAI,CAAC,CAY1E;AAED;;;;GAIG;AACH,wBAAsB,cAAc,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,mBAAmB,EAAE,GAAG,IAAI,CAAC,CAaxF;AAED;;;;GAIG;AACH,wBAAsB,mBAAmB,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,mBAAmB,EAAE,GAAG,IAAI,CAAC,CAiB7F;AAED;;;;GAIG;AACH,wBAAsB,oBAAoB,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,EAAE,GAAG,IAAI,CAAC,CAiBnF;AAMD,MAAM,WAAW,QAAQ;IACvB,MAAM,EAAE,MAAM,CAAC;IACf,KAAK,EAAE,MAAM,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;IAClB,QAAQ,EAAE,MAAM,CAAC;IACjB,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,WAAW;IAC1B,MAAM,EAAE,MAAM,CAAC;IACf,KAAK,EAAE,MAAM,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;IAClB,QAAQ,EAAE,MAAM,CAAC;IACjB,MAAM,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;CACjC;AAED;;;;GAIG;AACH,wBAAsB,cAAc,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI,EAAE,GAAG,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,EAAE,GAAG,IAAI,CAAC,CAkBnG;AAED;;;;GAIG;AACH,wBAAsB,iBAAiB,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI,EAAE,GAAG,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,WAAW,EAAE,GAAG,IAAI,CAAC,CAkBzG;AAED;;;;;;;;;;GAUG;AACH,wBAAsB,mBAAmB,CACvC,YAAY,EAAE,MAAM,EAAE,EACtB,GAAG,CAAC,EAAE,MAAM,GACX,OAAO,CAAC,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC,CAgE9B;AAMD;;;;;;;;GAQG;AACH,wBAAgB,gBAAgB,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAkC/E;AAED;;;;;;;;;GASG;AACH,wBAAgB,oBAAoB,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,EAAE,CAsB9E;AAoBD,wBAAgB,kBAAkB,CAChC,MAAM,EAAE,KAAK,CAAC;IAAE,IAAI,EAAE,MAAM,CAAA;CAAE,CAAC,EAC/B,KAAK,CAAC,EAAE,MAAM,GACb;IACD,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,MAAM,CAAC;CAClB,CA6BA"}

package/dist/lib/github.js

@@ -135,7 +135,7 @@ export async function fetchMergedPRs(since, cwd) {
         const args = [
             'pr', 'list',
             '--state', 'merged',
-            '--json', 'number,title,createdAt,mergedAt,body',
+            '--json', 'number,title,createdAt,mergedAt,body,headRefName',
             '--limit', '1000',
         ];
         if (since) {
@@ -175,6 +175,74 @@ export async function fetchClosedIssues(since, cwd) {
         return null;
     }
 }
+/**
+ * Fetch the "On it!" comment timestamp for multiple issues using GraphQL.
+ *
+ * Uses a batched GraphQL query via `gh api graphql` to fetch comments for
+ * many issues in a single API call. Finds the first comment containing
+ * "On it!" (posted by `af spawn`). Returns a map of issue number → ISO timestamp.
+ * Issues without an "On it!" comment are omitted from the result.
+ *
+ * Batches in groups of 50 to stay within GraphQL complexity limits.
+ * For 100 issues, this makes 2 API calls instead of 100.
+ */
+export async function fetchOnItTimestamps(issueNumbers, cwd) {
+    const result = new Map();
+    if (issueNumbers.length === 0)
+        return result;
+    const unique = [...new Set(issueNumbers)];
+    // Get repo owner/name for GraphQL query
+    let owner;
+    let repoName;
+    try {
+        const { stdout } = await execFileAsync('gh', [
+            'repo', 'view', '--json', 'owner,name',
+        ], { cwd });
+        const repo = JSON.parse(stdout);
+        owner = repo.owner.login;
+        repoName = repo.name;
+    }
+    catch {
+        return result; // Can't determine repo, skip gracefully
+    }
+    const BATCH_SIZE = 50;
+    for (let i = 0; i < unique.length; i += BATCH_SIZE) {
+        const batch = unique.slice(i, i + BATCH_SIZE);
+        // Build aliased GraphQL query — one field per issue
+        const issueFragments = batch.map((num) => `issue${num}: issue(number: ${num}) { comments(first: 50) { nodes { body createdAt } } }`).join('\n    ');
+        const query = `query($owner: String!, $name: String!) {
+  repository(owner: $owner, name: $name) {
+    ${issueFragments}
+  }
+}`;
+        try {
+            const { stdout } = await execFileAsync('gh', [
+                'api', 'graphql',
+                '-f', `query=${query}`,
+                '-f', `owner=${owner}`,
+                '-f', `name=${repoName}`,
+            ], { cwd });
+            const data = JSON.parse(stdout);
+            const repoData = data.data?.repository;
+            if (!repoData)
+                continue;
+            for (const num of batch) {
+                const issueData = repoData[`issue${num}`];
+                if (!issueData?.comments?.nodes)
+                    continue;
+                const onItComment = issueData.comments.nodes
+                    .find((c) => c.body.includes('On it!'));
+                if (onItComment) {
+                    result.set(num, onItComment.createdAt);
+                }
+            }
+        }
+        catch {
+            // Silently skip batch — fallback to PR createdAt will be used
+        }
+    }
+    return result;
+}
 // =============================================================================
 // Parsing utilities
 // =============================================================================

package/dist/lib/github.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@cluesmith/codev",
-  "version": "2.1.0",
+  "version": "2.1.2",
   "description": "Codev CLI - AI-assisted software development framework",
   "type": "module",
   "bin": {

package/skeleton/.claude/skills/af/SKILL.md

@@ -103,14 +103,20 @@ Edit `af-config.json` at project root to customize shell commands.
 
 ## Pre-Spawn Checklist
 
-**Before `af spawn`, commit all local changes.** Builders work in git worktrees
-branched from HEAD — uncommitted files (specs, plans, codev updates) are invisible
-to the builder. The spawn command will refuse if the worktree is dirty (override
-with `--force`).
+**Before every `af spawn`:**
+
+1. **`git status`** — Check for uncommitted changes
+2. **Commit if dirty** — Builders branch from HEAD; uncommitted specs/plans are invisible
+3. **Include `--protocol`** — It is **REQUIRED** for all numbered spawns (e.g., `af spawn 42 --protocol spir`)
+
+The spawn command will refuse if the worktree is dirty (override with `--force`,
+but the builder won't see uncommitted files).
 
 ## Common Mistakes
 
+- **Forgetting `--protocol`** — `af spawn 42` fails; use `af spawn 42 --protocol spir` (or bugfix, tick, etc.)
 - **Spawning with uncommitted changes** — builder won't see specs, plans, or codev updates
+- **Running `git pull` after spawn failure** — Usually unnecessary; check `git status` first, commit, then retry
 - There is NO `codev tower` command — Tower is managed via `af tower`
 - There is NO `restart` subcommand — stop then start
 - There is NO `af start` for Tower — use `af tower start` or `af workspace start`

package/skeleton/protocols/air/protocol.json

@@ -65,7 +65,7 @@
       },
       "checks": {
         "pr_exists": {
-          "command": "gh pr list --head \"$(git branch --show-current)\" --json number --jq 'length' | grep -q '^[1-9]'",
+          "command": "gh pr list --state all --head \"$(git branch --show-current)\" --json number --jq 'length' | grep -q '^[1-9]'",
           "description": "PR must be created before signaling completion"
         },
         "e2e_tests": {

package/skeleton/protocols/aspir/protocol.json

@@ -114,7 +114,7 @@
       },
       "checks": {
         "pr_exists": {
-          "command": "gh pr list --head \"$(git branch --show-current)\" --json number --jq 'length' | grep -q '^[1-9]'",
+          "command": "gh pr list --state all --head \"$(git branch --show-current)\" --json number --jq 'length' | grep -q '^[1-9]'",
           "description": "PR must be created before signaling completion"
         },
         "review_has_arch_updates": {

package/skeleton/protocols/spir/protocol.json

@@ -117,7 +117,7 @@
       },
       "checks": {
         "pr_exists": {
-          "command": "gh pr list --head \"$(git branch --show-current)\" --json number --jq 'length' | grep -q '^[1-9]'",
+          "command": "gh pr list --state all --head \"$(git branch --show-current)\" --json number --jq 'length' | grep -q '^[1-9]'",
           "description": "PR must be created before signaling completion"
         },
         "review_has_arch_updates": {

package/skeleton/resources/commands/agent-farm.md

@@ -146,20 +146,30 @@ Does NOT clean up worktrees - use `af cleanup` for that.
 Spawn a new builder.
 
 ```bash
-af spawn [issue-number] [options]
+af spawn [issue-number] --protocol <name> [options]
 ```
 
 **Arguments:**
 - `issue-number` - Issue number to build (positional, e.g., `42`)
 
+**Required:**
+- `--protocol <name>` - Protocol to use: spir, bugfix, tick, maintain, experiment. **REQUIRED** for all numbered spawns. Only `--task`, `--shell`, and `--worktree` spawns skip this flag.
+
 **Options:**
-- `--task <text>` - Spawn builder with a task description
-- `--protocol <name>` - Spawn builder to run a protocol
-- `--shell` - Spawn a bare Claude session
-- `--worktree` - Spawn worktree session
+- `--task <text>` - Spawn builder with a task description (no `--protocol` needed)
+- `--shell` - Spawn a bare Claude session (no `--protocol` needed)
+- `--worktree` - Spawn worktree session (no `--protocol` needed)
 - `--files <files>` - Context files (comma-separated)
 - `--no-role` - Skip loading role prompt
 
+**Preconditions:**
+
+The spawn command requires a **clean git worktree**. Before spawning:
+
+1. Run `git status` to check for uncommitted changes
+2. Commit any pending changes — builders branch from HEAD, so uncommitted specs/plans are invisible to the builder
+3. The command will refuse to spawn if the worktree is dirty (override with `--force`, but the builder won't see your uncommitted files)
+
 **Description:**
 
 Creates a new builder in an isolated git worktree. The builder gets:
@@ -170,19 +180,30 @@ Creates a new builder in an isolated git worktree. The builder gets:
 **Examples:**
 
 ```bash
-# Spawn builder for issue #42
-af spawn 42
+# Spawn builder for issue #42 — --protocol is REQUIRED
+af spawn 42 --protocol spir
 
-# Spawn with task description
+# Spawn builder for a bugfix
+af spawn 42 --protocol bugfix
+
+# Spawn with task description (no --protocol needed)
 af spawn --task "Fix login bug in auth module"
 
-# Spawn bare Claude session
+# Spawn bare Claude session (no --protocol needed)
 af spawn --shell
 
 # Spawn with context files
-af spawn 42 --files "src/auth.ts,tests/auth.test.ts"
+af spawn 42 --protocol spir --files "src/auth.ts,tests/auth.test.ts"
 ```
 
+**Common Errors:**
+
+| Error | Cause | Fix |
+|-------|-------|-----|
+| "Missing required flag: --protocol" | Forgot `--protocol` | Add `--protocol spir` (or bugfix, tick, etc.) |
+| "Dirty worktree" | Uncommitted changes | Run `git status`, commit changes, retry |
+| "Builder already exists" | Worktree collision | Use `--resume` to resume, or `af cleanup` first |
+
 ---
 
 ### af status
@@ -532,7 +553,7 @@ Or override via CLI flags:
 
 ```bash
 af workspace start --architect-cmd "claude --model opus"
-af spawn 42 --builder-cmd "claude --model haiku"
+af spawn 42 --protocol spir --builder-cmd "claude --model haiku"
 ```
 
 ---

package/skeleton/roles/architect.md

@@ -16,30 +16,42 @@ Builders work autonomously in isolated git worktrees. The Architect:
 
 | Mode | Command | Use When |
 |------|---------|----------|
-| **Strict** (default) | `af spawn XXXX` | Porch orchestrates - runs autonomously to completion |
-| **Soft** | `af spawn XXXX --soft` | AI follows protocol - you verify compliance |
+| **Strict** (default) | `af spawn XXXX --protocol spir` | Porch orchestrates - runs autonomously to completion |
+| **Soft** | `af spawn XXXX --protocol spir --soft` | AI follows protocol - you verify compliance |
 
 **Strict mode** (default): Porch orchestrates the builder with automated gates, 3-way consultations, and enforced phase transitions. More likely to complete autonomously without intervention.
 
 **Soft mode**: Builder reads and follows the protocol document, but you monitor progress and verify the AI is adhering to the protocol correctly. Use when you want more hands-on oversight.
 
+### Pre-Spawn Checklist
+
+**Before every `af spawn`, complete these steps:**
+
+1. **`git status`** — Ensure worktree is clean (no uncommitted changes)
+2. **Commit if needed** — Builders branch from HEAD; uncommitted specs/plans are invisible
+3. **`af spawn N --protocol <name>`** — `--protocol` is **REQUIRED** (spir, bugfix, tick, etc.)
+
+The spawn command will refuse if the worktree is dirty (override with `--force`, but your builder won't see uncommitted files).
+
 ## Key Tools
 
 ### Agent Farm CLI (`af`)
 
 ```bash
-af spawn 1                          # Strict mode (default) - porch-driven
-af spawn 1 -t "feature"             # Strict mode with title (no spec yet)
-af spawn 1 --resume                 # Resume existing porch state
-af spawn 1 --soft                   # Soft mode - protocol-guided
-af spawn --task "fix the bug"             # Ad-hoc task builder (soft mode)
-af spawn --worktree                       # Worktree with no initial prompt
-af status                                 # Check all builders
-af cleanup -p 0001                        # Remove completed builder
-af workspace start/stop                   # Workspace management
-af send 0001 "message"                    # Short message to builder
+af spawn 1 --protocol spir               # Strict mode (default) - porch-driven
+af spawn 1 --protocol spir -t "feature"  # Strict mode with title (no spec yet)
+af spawn 1 --resume                      # Resume existing porch state
+af spawn 1 --protocol spir --soft        # Soft mode - protocol-guided
+af spawn --task "fix the bug"            # Ad-hoc task builder (soft mode)
+af spawn --worktree                      # Worktree with no initial prompt
+af status                                # Check all builders
+af cleanup -p 0001                       # Remove completed builder
+af workspace start/stop                  # Workspace management
+af send 0001 "message"                   # Short message to builder
 ```
 
+> **Note:** `--protocol` is REQUIRED for all numbered spawns. Only `--task`, `--shell`, and `--worktree` spawns skip it.
+
 **Note:** `af`, `consult`, `porch`, and `codev` are global commands. They work from any directory.
 
 ### Porch CLI (for strict mode)
@@ -79,16 +91,20 @@ wait
 
 ```bash
 # 1. Create a GitHub Issue for the feature
-# 2. Spawn the builder
+# 2. Ensure worktree is clean: git status → commit if needed
+# 3. Spawn the builder (--protocol is REQUIRED)
 
 # Default: Strict mode (porch-driven with gates)
-af spawn 42
+af spawn 42 --protocol spir
 
 # With project title (if no spec exists yet)
-af spawn 42 -t "user-authentication"
+af spawn 42 --protocol spir -t "user-authentication"
 
 # Or: Soft mode (builder follows protocol independently)
-af spawn 42 --soft
+af spawn 42 --protocol spir --soft
+
+# For bugfixes
+af spawn 42 --protocol bugfix
 ```
 
 ### 2. Approving Gates (Strict Mode Only)
@@ -205,13 +221,14 @@ af cleanup -p 0042
 2. **DO NOT commit directly to main** - All changes go through builder PRs
 3. **DO NOT use `af send` for long messages** - Use GitHub PR comments instead
 4. **DO NOT run `af` commands from inside a builder worktree** - All `af` commands must be run from the repository root on `main`. Spawning from a worktree nests builders inside it, breaking everything.
+5. **DO NOT `cd` into a builder worktree** - All CLI tools (`af`, `porch`, `consult`, `codev`) are global commands that work from any directory. If a command fails, debug it — don't cd into the worktree. Use absolute paths with the Read tool to inspect builder files (e.g., `Read /path/to/.builders/0042/codev/specs/...`).
 
 ### ALWAYS Do These:
 1. **Create GitHub Issues first** - Track projects as issues before spawning
 2. **Review artifacts before approving gates** - (Strict mode) Read the spec/plan carefully
 3. **Use PR comments for feedback** - Not terminal send-keys
 4. **Let builders own their work** - Guide, don't take over
-5. **Stay on `main` at the repo root** - All architect operations happen from the main workspace
+5. **Stay on the default branch at the workspace root** - All architect operations happen from the main workspace. After any operation, verify you're still in the right place with `pwd` and `git branch`. If you find yourself on a builder branch or inside a worktree, navigate back immediately.
 
 ## Project Tracking
 
@@ -266,8 +283,9 @@ Before approving implementations with UX requirements:
 
 | Task | Command |
 |------|---------|
-| Start feature (strict, default) | `af spawn <id>` |
-| Start feature (soft) | `af spawn <id> --soft` |
+| Start feature (strict, default) | `af spawn <id> --protocol spir` |
+| Start feature (soft) | `af spawn <id> --protocol spir --soft` |
+| Start bugfix | `af spawn <id> --protocol bugfix` |
 | Check all builders | `af status` |
 | Check one project | `porch status <id>` |
 | Approve spec | `porch approve <id> spec-approval` |