@cliwant/mcp-sam-gov 1.3.0 → 1.5.0

package/src/openfda-drugsfda.ts

@@ -0,0 +1,313 @@
+/**
+ * openfda-drugsfda.ts — openFDA DRUG APPROVALS (Drugs@FDA, api.fda.gov) — the
+ * PHARMA REGULATORY-APPROVAL lane. FDA-approved drug applications (NDA/ANDA/BLA):
+ * the sponsor, the application number, each approved product (brand/generic name,
+ * dosage form, route, marketing status), and the submission/approval history.
+ * Answers "what drugs did sponsor X get approved, and which are still marketed" —
+ * pharma vendor product/approval intelligence.
+ *
+ * ★ SAME SOURCE + ENVELOPE + CRUX as openfda.ts / openfda-device.ts (ADR-0054/0056).
+ *   Same host (api.fda.gov), same envelope `{ meta:{ results:{ skip,limit,total }},
+ *   results:[…] }`, same ★no-match→HTTP-404-NOT_FOUND-as-honest-empty crux, same
+ *   optional query-key K-test, same fixed-host SSRF idiom, same structured-only (no
+ *   raw Lucene passthrough) search. REUSES openfda.ts's `fetchOpenfda`,
+ *   `readOpenfdaError`, `luceneQuote`, `openfdaApiKey`, `OPENFDA_HOST` verbatim.
+ *
+ *   GET https://api.fda.gov/drug/drugsfda.json?search=<lucene>&limit=&skip=[&api_key=]
+ *   → { meta:{ results:{ skip,limit,total }}, results:[ { application_number,
+ *       sponsor_name, products:[…], submissions:[…] } ] }.
+ *
+ * ★ HONESTY (mirrors the siblings exactly): [P1] totalAvailable = meta.results.total
+ *   EXACT (never results.length); skip/limit offset pagination. [★P2] 404 NOT_FOUND
+ *   ⇒ honest empty (never thrown); other 4xx ⇒ invalid_input surfacing openFDA's
+ *   message; 5xx/429 ⇒ THROW. [P3] every scalar via `str` (null-never-""); nested
+ *   products/submissions arrays default to [] and each field is str (never fabricated).
+ *   [P4] meta.results / results absent-or-mis-shaped ⇒ driftError. [K-test] the
+ *   OPTIONAL OPENFDA_API_KEY rides ONLY &api_key=; label/source name mode only.
+ *   [SSRF] fixed host; all VALUES Lucene-escaped + phrase-quoted via URLSearchParams.
+ */
+
+import { ToolErrorCarrier, errorFromResponse } from "./errors.js";
+import { driftError } from "./datasource.js";
+import { str } from "./coerce.js";
+import { withMeta, type MetaBundle, type ResponseMeta } from "./meta.js";
+import {
+  OPENFDA_HOST,
+  fetchOpenfda,
+  readOpenfdaError,
+  luceneQuote,
+  openfdaApiKey,
+} from "./openfda.js";
+
+const DEFAULT_LIMIT = 25;
+const MAX_LIMIT = 100;
+
+/** host+path-only label (→ ToolError.upstreamEndpoint); NEVER carries the key. */
+const DRUGSFDA_LABEL = "openfda:/drug/drugsfda";
+
+// ─── Honesty notes ────────────────────────────────────────────────
+const NOT_DETERMINATION_NOTE =
+  "openFDA Drugs@FDA records are FDA-published drug-application data; treat approval/marketing status as of the source's last publication. This is reference data, not a live regulatory determination.";
+const KEYLESS_NOTE =
+  "Keyless: no OPENFDA_API_KEY is set. openFDA allows ~1000 requests/day without a key; a free key raises the rate limit (get one at https://open.fda.gov/apis/authentication/).";
+const KEYED_NOTE =
+  "OPENFDA_API_KEY is set — it rides ONLY the &api_key= query parameter to api.fda.gov (openFDA has no header option), raising the rate limit. Its value is NEVER logged, echoed, or placed in this response.";
+const NO_FILTER_NOTE =
+  "No structured filters were applied — this is an unscoped scan of the WHOLE Drugs@FDA collection. Add sponsorName / brandName / activeIngredient / applicationNumber to scope the result set.";
+const MARKETING_NOTE =
+  "products[].marketingStatus is the FDA marketing category (e.g. 'Prescription', 'Over-the-counter', 'Discontinued', 'None (Tentative Approval)') — a 'Discontinued' product is NOT an approval revocation. submissions[] is the application's action history (ORIG approval + subsequent supplements).";
+
+// ─── Curated row shape ────────────────────────────────────────────
+export type DrugsfdaProduct = {
+  brandName: string | null;
+  genericIngredients: { name: string | null; strength: string | null }[];
+  dosageForm: string | null;
+  route: string | null;
+  marketingStatus: string | null;
+};
+export type DrugsfdaSubmission = {
+  submissionType: string | null; // ORIG / SUPPL
+  submissionNumber: string | null;
+  submissionStatus: string | null; // AP (approved) etc.
+  submissionStatusDate: string | null; // YYYYMMDD string, preserved (P3)
+  submissionClass: string | null;
+};
+export type DrugsfdaApplication = {
+  applicationNumber: string | null;
+  sponsorName: string | null;
+  products: DrugsfdaProduct[];
+  submissions: DrugsfdaSubmission[];
+};
+
+/** Map ONE Drugs@FDA result row → the curated shape. Every scalar via `str`. */
+function mapApplication(row: unknown): DrugsfdaApplication {
+  const r = (row ?? {}) as Record<string, unknown>;
+  const products = Array.isArray(r.products) ? r.products : [];
+  const submissions = Array.isArray(r.submissions) ? r.submissions : [];
+  return {
+    applicationNumber: str(r.application_number),
+    sponsorName: str(r.sponsor_name),
+    products: products.map((p) => {
+      const pr = (p ?? {}) as Record<string, unknown>;
+      const ings = Array.isArray(pr.active_ingredients) ? pr.active_ingredients : [];
+      return {
+        brandName: str(pr.brand_name),
+        genericIngredients: ings.map((a) => {
+          const ai = (a ?? {}) as Record<string, unknown>;
+          return { name: str(ai.name), strength: str(ai.strength) };
+        }),
+        dosageForm: str(pr.dosage_form),
+        route: str(pr.route),
+        marketingStatus: str(pr.marketing_status),
+      };
+    }),
+    submissions: submissions.map((s) => {
+      const su = (s ?? {}) as Record<string, unknown>;
+      return {
+        submissionType: str(su.submission_type),
+        submissionNumber: str(su.submission_number),
+        submissionStatus: str(su.submission_status),
+        submissionStatusDate: str(su.submission_status_date),
+        submissionClass: str(su.submission_class_code_description),
+      };
+    }),
+  };
+}
+
+// ─── Lucene search assembly (structured-only; injection-safe) ─────
+export type DrugsfdaFilters = {
+  sponsorName?: string; // → sponsor_name
+  brandName?: string; // → products.brand_name
+  activeIngredient?: string; // → products.active_ingredients.name
+  applicationNumber?: string; // → application_number
+};
+
+export function buildDrugsfdaSearch(f: DrugsfdaFilters): string {
+  const clauses: string[] = [];
+  if (f.sponsorName !== undefined)
+    clauses.push(`sponsor_name:${luceneQuote(f.sponsorName)}`);
+  if (f.brandName !== undefined)
+    clauses.push(`products.brand_name:${luceneQuote(f.brandName)}`);
+  if (f.activeIngredient !== undefined)
+    clauses.push(`products.active_ingredients.name:${luceneQuote(f.activeIngredient)}`);
+  if (f.applicationNumber !== undefined)
+    clauses.push(`application_number:${luceneQuote(f.applicationNumber)}`);
+  return clauses.join(" AND ");
+}
+
+// ─── Tool: openfda_drug_approvals ─────────────────────────────────
+export type DrugApprovalsArgs = DrugsfdaFilters & {
+  limit?: number;
+  skip?: number;
+};
+
+/**
+ * Search openFDA Drugs@FDA drug-approval applications with structured filters →
+ * curated application rows (sponsor, application number, approved products, submission
+ * history) + honest `_meta`. KEYLESS (OPTIONAL OPENFDA_API_KEY only raises the rate
+ * limit). totalAvailable = meta.results.total (EXACT); skip/limit pagination. A
+ * no-match query (openFDA HTTP 404 NOT_FOUND) ⇒ an honest empty, never a throw.
+ */
+export async function drugApprovals(args: DrugApprovalsArgs): Promise<MetaBundle> {
+  const limit = clampLimit(args.limit);
+  const skip = clampSkip(args.skip);
+
+  const filters: DrugsfdaFilters = {
+    sponsorName: args.sponsorName,
+    brandName: args.brandName,
+    activeIngredient: args.activeIngredient,
+    applicationNumber: args.applicationNumber,
+  };
+  const search = buildDrugsfdaSearch(filters);
+  const filtersApplied: string[] = [];
+  if (args.sponsorName !== undefined) filtersApplied.push("sponsorName");
+  if (args.brandName !== undefined) filtersApplied.push("brandName");
+  if (args.activeIngredient !== undefined) filtersApplied.push("activeIngredient");
+  if (args.applicationNumber !== undefined) filtersApplied.push("applicationNumber");
+
+  const params = new URLSearchParams();
+  if (search !== "") params.set("search", search);
+  params.set("limit", String(limit));
+  params.set("skip", String(skip));
+  const key = openfdaApiKey();
+  if (key !== undefined) params.set("api_key", key); // OPTIONAL — &api_key= ONLY
+
+  const url = `https://${OPENFDA_HOST}/drug/drugsfda.json?${params.toString()}`;
+
+  const res = await fetchOpenfda(url, DRUGSFDA_LABEL);
+
+  if (res.status === 404) {
+    const { code, message } = await readOpenfdaError(res);
+    if (code === "NOT_FOUND") {
+      return emptyResult(limit, skip, filtersApplied, key !== undefined);
+    }
+    throw new ToolErrorCarrier({
+      ...errorFromResponse(res, DRUGSFDA_LABEL),
+      message: message
+        ? `openFDA returned HTTP 404 at ${DRUGSFDA_LABEL}: ${message}`
+        : `Resource not found at ${DRUGSFDA_LABEL} (HTTP 404).`,
+    });
+  }
+
+  if (res.status >= 400 && res.status < 500 && res.status !== 429) {
+    const { message } = await readOpenfdaError(res);
+    throw new ToolErrorCarrier({
+      kind: "invalid_input",
+      retryable: false,
+      message: message
+        ? `openFDA rejected the request (HTTP ${res.status}) at ${DRUGSFDA_LABEL}: ${message}`
+        : `Bad request (HTTP ${res.status}) at ${DRUGSFDA_LABEL}.`,
+      upstreamStatus: res.status,
+      upstreamEndpoint: DRUGSFDA_LABEL,
+    });
+  }
+
+  if (!res.ok) {
+    throw new ToolErrorCarrier(errorFromResponse(res, DRUGSFDA_LABEL));
+  }
+
+  let body: unknown;
+  try {
+    body = await res.json();
+  } catch (e) {
+    if (e instanceof SyntaxError) {
+      throw driftError(
+        DRUGSFDA_LABEL,
+        `openFDA ${DRUGSFDA_LABEL} returned a non-JSON body at HTTP 200 — schema drift (never read as an empty result).`,
+      );
+    }
+    throw e;
+  }
+
+  const b = (body ?? {}) as { meta?: unknown; results?: unknown };
+  const meta = (b.meta ?? {}) as { results?: unknown };
+  const metaResults = meta.results as { total?: unknown } | undefined;
+  if (metaResults === undefined || metaResults === null || typeof metaResults !== "object") {
+    throw driftError(
+      DRUGSFDA_LABEL,
+      `openFDA ${DRUGSFDA_LABEL} shape drift — meta.results (the skip/limit/total carrier) is missing.`,
+    );
+  }
+  if (!Array.isArray(b.results)) {
+    throw driftError(
+      DRUGSFDA_LABEL,
+      `openFDA ${DRUGSFDA_LABEL} shape drift — results must be an array.`,
+    );
+  }
+
+  const applications = (b.results as unknown[]).map(mapApplication);
+  const returned = applications.length;
+
+  const rawTotal = metaResults.total;
+  const totalAvailable =
+    typeof rawTotal === "number" && Number.isFinite(rawTotal) ? rawTotal : null;
+  const hasMore = totalAvailable !== null && skip + returned < totalAvailable;
+  const nextOffset = hasMore ? skip + returned : null;
+
+  const notes: string[] = [NOT_DETERMINATION_NOTE, MARKETING_NOTE, keyNote(key !== undefined)];
+  if (filtersApplied.length === 0) notes.push(NO_FILTER_NOTE);
+
+  return withMeta(
+    { applications },
+    {
+      source: `${OPENFDA_HOST} /drug/drugsfda (openFDA Drugs@FDA approvals; ${
+        key !== undefined ? "OPENFDA_API_KEY rate-limit key applied" : "keyless"
+      })`,
+      keylessMode: true,
+      returned,
+      totalAvailable,
+      filtersApplied,
+      filtersDropped: [],
+      fieldsUnavailable: [],
+      pagination: { offset: skip, limit, hasMore, nextOffset },
+      notes,
+    } satisfies Partial<ResponseMeta>,
+  );
+}
+
+// ─── Small helpers ────────────────────────────────────────────────
+function keyNote(hasKey: boolean): string {
+  return hasKey ? KEYED_NOTE : KEYLESS_NOTE;
+}
+
+function emptyResult(
+  limit: number,
+  skip: number,
+  filtersApplied: string[],
+  hasKey: boolean,
+): MetaBundle {
+  return withMeta(
+    { applications: [] as DrugsfdaApplication[] },
+    {
+      source: `${OPENFDA_HOST} /drug/drugsfda (openFDA Drugs@FDA approvals; ${
+        hasKey ? "OPENFDA_API_KEY rate-limit key applied" : "keyless"
+      })`,
+      keylessMode: true,
+      returned: 0,
+      totalAvailable: 0,
+      filtersApplied,
+      filtersDropped: [],
+      fieldsUnavailable: [],
+      pagination: { offset: skip, limit, hasMore: false, nextOffset: null },
+      notes: [
+        "No Drugs@FDA applications matched this query (openFDA returned HTTP 404 NOT_FOUND — the source's honest no-match). This is an exact empty, not an error.",
+        NOT_DETERMINATION_NOTE,
+        keyNote(hasKey),
+      ],
+    } satisfies Partial<ResponseMeta>,
+  );
+}
+
+function clampLimit(v: unknown): number {
+  if (typeof v !== "number" || !Number.isFinite(v)) return DEFAULT_LIMIT;
+  const n = Math.floor(v);
+  if (n < 1) return 1;
+  if (n > MAX_LIMIT) return MAX_LIMIT;
+  return n;
+}
+
+function clampSkip(v: unknown): number {
+  if (typeof v !== "number" || !Number.isFinite(v)) return 0;
+  const n = Math.floor(v);
+  return n < 0 ? 0 : n;
+}