@cleocode/worktree 2026.10.8-rc.ci.675 → 2026.10.9-rc.ci.676

package/dist/index.d.ts

@@ -31,14 +31,14 @@ export type { WorktreeAuditPayload } from './worktree-audit.js';
 export { addWorktreeToSentinelIndex, appendWorktreeAuditLog, removeWorktreeFromSentinelIndex, resolveWorktreeIndexPath, WORKTREE_INDEX_RELATIVE_PATH, WORKTREE_LIFECYCLE_AUDIT_FILE, } from './worktree-audit.js';
 export { createWorktree } from './worktree-create.js';
 export { destroyWorktree } from './worktree-destroy.js';
-export { runWorktreeHooks } from './worktree-hooks.js';
+export { runProjectWorktreeHooks, runWorktreeHooks } from './worktree-hooks.js';
 export { applyIncludePatterns, loadWorktreeIncludePatterns } from './worktree-include.js';
 export { listWorktrees, listWorktreesByProjectRoot, resolveWorktreeRoot, } from './worktree-list.js';
 export * from './worktree-locate.js';
 export { type AcquireWorktreeTaskLockOptions, acquireWorktreeTaskLock, assessWorktreeLockHolder, DEFAULT_WORKTREE_LOCK_TTL_MS, heartbeatWorktreeTaskLock, isSameLockCaller, isWorktreeLockedError, type ProcessLiveness, type ProcessProbe, probeProcess, readProcessStartTime, readStableDeviceId, readWorktreeTaskLock, releaseWorktreeTaskLock, releaseWorktreeTaskLocksForSession, resolveWorktreeLockTtlMs, WORKTREE_LOCK_TTL_ENV, type WorktreeLockAssessment, type WorktreeLockedError, } from './worktree-lock.js';
 export type { MigrateWorktreeResult } from './worktree-migrate.js';
 export { discoverParentProjectRoot, migrateAllWorktreeIdentities, migrateWorktreeIdentity, } from './worktree-migrate.js';
-export { installWorktreeDependencies } from './worktree-pnpm.js';
+export { configureWorktreePnpmStore, installWorktreeDependencies } from './worktree-pnpm.js';
 export type { CoreWorktreeLeakResult, InstallStatus } from './worktree-preflight.js';
 export { assertNoWorktreeConfigLeak, detectAndHealCoreWorktreeLeak, ensureWorktreeBuildReady, } from './worktree-preflight.js';
 export { pruneWorktrees } from './worktree-prune.js';

package/dist/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;GAqBG;AAGH,YAAY,EACV,qBAAqB,EACrB,oBAAoB,EACpB,sBAAsB,EACtB,qBAAqB,EACrB,oBAAoB,EACpB,qBAAqB,EACrB,oBAAoB,EACpB,YAAY,EACZ,kBAAkB,EAClB,sBAAsB,EACtB,iBAAiB,GAClB,MAAM,qBAAqB,CAAC;AAC7B,YAAY,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAC;AAC3D,OAAO,EAAE,oBAAoB,EAAE,MAAM,oBAAoB,CAAC;AAC1D,OAAO,EACL,KAAK,2BAA2B,EAChC,oBAAoB,EACpB,oBAAoB,EACpB,sBAAsB,EACtB,UAAU,EACV,SAAS,EACT,OAAO,EACP,uBAAuB,GACxB,MAAM,UAAU,CAAC;AAGlB,OAAO,EACL,eAAe,IAAI,mBAAmB,EACtC,iBAAiB,EACjB,iBAAiB,EACjB,iBAAiB,IAAI,qBAAqB,EAC1C,cAAc,IAAI,kBAAkB,EACpC,SAAS,IAAI,aAAa,GAC3B,MAAM,mBAAmB,CAAC;AAC3B,YAAY,EAAE,sBAAsB,EAAE,cAAc,EAAE,MAAM,eAAe,CAAC;AAC5E,OAAO,EAAE,qBAAqB,EAAE,sBAAsB,EAAE,MAAM,eAAe,CAAC;AAC9E,YAAY,EAAE,oBAAoB,EAAE,MAAM,qBAAqB,CAAC;AAChE,OAAO,EACL,0BAA0B,EAC1B,sBAAsB,EACtB,+BAA+B,EAC/B,wBAAwB,EACxB,4BAA4B,EAC5B,6BAA6B,GAC9B,MAAM,qBAAqB,CAAC;AAC7B,OAAO,EAAE,cAAc,EAAE,MAAM,sBAAsB,CAAC;AACtD,OAAO,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAC;AACxD,OAAO,EAAE,uBAAuB,EAAE,gBAAgB,EAAE,MAAM,qBAAqB,CAAC;AAChF,OAAO,EAAE,oBAAoB,EAAE,2BAA2B,EAAE,MAAM,uBAAuB,CAAC;AAC1F,OAAO,EACL,aAAa,EACb,0BAA0B,EAC1B,mBAAmB,GACpB,MAAM,oBAAoB,CAAC;AAC5B,cAAc,sBAAsB,CAAC;AACrC,OAAO,EACL,KAAK,8BAA8B,EACnC,uBAAuB,EACvB,wBAAwB,EACxB,4BAA4B,EAC5B,yBAAyB,EACzB,gBAAgB,EAChB,qBAAqB,EACrB,KAAK,eAAe,EACpB,KAAK,YAAY,EACjB,YAAY,EACZ,oBAAoB,EACpB,kBAAkB,EAClB,oBAAoB,EACpB,uBAAuB,EACvB,kCAAkC,EAClC,wBAAwB,EACxB,qBAAqB,EACrB,KAAK,sBAAsB,EAC3B,KAAK,mBAAmB,GACzB,MAAM,oBAAoB,CAAC;AAC5B,YAAY,EAAE,qBAAqB,EAAE,MAAM,uBAAuB,CAAC;AACnE,OAAO,EACL,yBAAyB,EACzB,4BAA4B,EAC5B,uBAAuB,GACxB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EAAE,0BAA0B,EAAE,2BAA2B,EAAE,MAAM,oBAAoB,CAAC;AAC7F,YAAY,EAAE,sBAAsB,EAAE,aAAa,EAAE,MAAM,yBAAyB,CAAC;AACrF,OAAO,EACL,0BAA0B,EAC1B,6BAA6B,EAC7B,wBAAwB,GACzB,MAAM,yBAAyB,CAAC;AACjC,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC"}

package/dist/index.js

@@ -29,13 +29,13 @@ export { detectPartialWorktree, recoverPartialWorktree } from './recovery.js';
 export { addWorktreeToSentinelIndex, appendWorktreeAuditLog, removeWorktreeFromSentinelIndex, resolveWorktreeIndexPath, WORKTREE_INDEX_RELATIVE_PATH, WORKTREE_LIFECYCLE_AUDIT_FILE, } from './worktree-audit.js';
 export { createWorktree } from './worktree-create.js';
 export { destroyWorktree } from './worktree-destroy.js';
-export { runWorktreeHooks } from './worktree-hooks.js';
+export { runProjectWorktreeHooks, runWorktreeHooks } from './worktree-hooks.js';
 export { applyIncludePatterns, loadWorktreeIncludePatterns } from './worktree-include.js';
 export { listWorktrees, listWorktreesByProjectRoot, resolveWorktreeRoot, } from './worktree-list.js';
 export * from './worktree-locate.js';
 export { acquireWorktreeTaskLock, assessWorktreeLockHolder, DEFAULT_WORKTREE_LOCK_TTL_MS, heartbeatWorktreeTaskLock, isSameLockCaller, isWorktreeLockedError, probeProcess, readProcessStartTime, readStableDeviceId, readWorktreeTaskLock, releaseWorktreeTaskLock, releaseWorktreeTaskLocksForSession, resolveWorktreeLockTtlMs, WORKTREE_LOCK_TTL_ENV, } from './worktree-lock.js';
 export { discoverParentProjectRoot, migrateAllWorktreeIdentities, migrateWorktreeIdentity, } from './worktree-migrate.js';
-export { installWorktreeDependencies } from './worktree-pnpm.js';
+export { configureWorktreePnpmStore, installWorktreeDependencies } from './worktree-pnpm.js';
 export { assertNoWorktreeConfigLeak, detectAndHealCoreWorktreeLeak, ensureWorktreeBuildReady, } from './worktree-preflight.js';
 export { pruneWorktrees } from './worktree-prune.js';
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;GAqBG;AAiBH,OAAO,EAAE,oBAAoB,EAAE,MAAM,oBAAoB,CAAC;AAC1D,OAAO,EAEL,oBAAoB,EACpB,oBAAoB,EACpB,sBAAsB,EACtB,UAAU,EACV,SAAS,EACT,OAAO,EACP,uBAAuB,GACxB,MAAM,UAAU,CAAC;AAClB,mEAAmE;AACnE,sEAAsE;AACtE,OAAO,EACL,eAAe,IAAI,mBAAmB,EACtC,iBAAiB,EACjB,iBAAiB,EACjB,iBAAiB,IAAI,qBAAqB,EAC1C,cAAc,IAAI,kBAAkB,EACpC,SAAS,IAAI,aAAa,GAC3B,MAAM,mBAAmB,CAAC;AAE3B,OAAO,EAAE,qBAAqB,EAAE,sBAAsB,EAAE,MAAM,eAAe,CAAC;AAE9E,OAAO,EACL,0BAA0B,EAC1B,sBAAsB,EACtB,+BAA+B,EAC/B,wBAAwB,EACxB,4BAA4B,EAC5B,6BAA6B,GAC9B,MAAM,qBAAqB,CAAC;AAC7B,OAAO,EAAE,cAAc,EAAE,MAAM,sBAAsB,CAAC;AACtD,OAAO,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAC;AACxD,OAAO,EAAE,uBAAuB,EAAE,gBAAgB,EAAE,MAAM,qBAAqB,CAAC;AAChF,OAAO,EAAE,oBAAoB,EAAE,2BAA2B,EAAE,MAAM,uBAAuB,CAAC;AAC1F,OAAO,EACL,aAAa,EACb,0BAA0B,EAC1B,mBAAmB,GACpB,MAAM,oBAAoB,CAAC;AAC5B,cAAc,sBAAsB,CAAC;AACrC,OAAO,EAEL,uBAAuB,EACvB,wBAAwB,EACxB,4BAA4B,EAC5B,yBAAyB,EACzB,gBAAgB,EAChB,qBAAqB,EAGrB,YAAY,EACZ,oBAAoB,EACpB,kBAAkB,EAClB,oBAAoB,EACpB,uBAAuB,EACvB,kCAAkC,EAClC,wBAAwB,EACxB,qBAAqB,GAGtB,MAAM,oBAAoB,CAAC;AAE5B,OAAO,EACL,yBAAyB,EACzB,4BAA4B,EAC5B,uBAAuB,GACxB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EAAE,0BAA0B,EAAE,2BAA2B,EAAE,MAAM,oBAAoB,CAAC;AAE7F,OAAO,EACL,0BAA0B,EAC1B,6BAA6B,EAC7B,wBAAwB,GACzB,MAAM,yBAAyB,CAAC;AACjC,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC"}

package/dist/worktree-create.d.ts

@@ -12,20 +12,14 @@
  *
  * @task T1161
  */
-import type { CreateWorktreeOptions, CreateWorktreeResult, WorktreeHookResult } from '@cleocode/contracts';
+import type { CreateWorktreeOptions, CreateWorktreeResult } from '@cleocode/contracts';
 /**
  * Extended result type including the bootstrap field.
  *
- * The contracts package will be updated separately to add this field to
- * {@link CreateWorktreeResult}; this local extension allows the implementation
- * to compile in the interim.
+ * Creation always supplies the canonical bootstrap result.
  */
 interface CreateWorktreeResultWithBootstrap extends CreateWorktreeResult {
-    bootstrap: {
-        copiedPaths: string[];
-        failedPaths: string[];
-        hookResults: WorktreeHookResult[];
-    };
+    bootstrap: NonNullable<CreateWorktreeResult['bootstrap']>;
     /** Glob patterns actually excluded via sparse-checkout (T9226). */
     appliedExcludePatterns: string[];
     /**
@@ -34,6 +28,19 @@ interface CreateWorktreeResultWithBootstrap extends CreateWorktreeResult {
      */
     appliedScope: string | null;
 }
+/**
+ * What a worker runs when provisioning did not install dependencies (T13524).
+ * It goes through the heavy queue and installs into the worktree's own store:
+ * concurrent installs into the shared global store corrupt `.pnpm/` with
+ * `@@`-prefixed directories (T9938, T13538), and deferral happens exactly when
+ * many spawns are in flight.
+ *
+ * @param worktreePath - The worktree the command installs into.
+ * @returns The shell command.
+ * @task T13524
+ * @task T13538
+ */
+export declare function workerInstallCommand(worktreePath: string): string;
 /**
  * Create a git worktree for an agent task.
  *

package/dist/worktree-create.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"worktree-create.d.ts","sourceRoot":"","sources":["../src/worktree-create.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAKH,OAAO,KAAK,EACV,qBAAqB,EACrB,oBAAoB,EAIrB,MAAM,qBAAqB,CAAC;AAE7B;;;;GAIG;AACH,UAAU,iCAAkC,SAAQ,oBAAoB;IACtE,SAAS,EAAE,WAAW,CAAC,oBAAoB,CAAC,WAAW,CAAC,CAAC,CAAC;IAC1D,mEAAmE;IACnE,sBAAsB,EAAE,MAAM,EAAE,CAAC;IACjC;;;OAGG;IACH,YAAY,EAAE,MAAM,GAAG,IAAI,CAAC;CAC7B;AAmMD;;;;;;;;;;;GAWG;AACH,wBAAgB,oBAAoB,CAAC,YAAY,EAAE,MAAM,GAAG,MAAM,CAKjE;AA6CD;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAgCG;AACH,wBAAsB,cAAc,CAClC,WAAW,EAAE,MAAM,EACnB,OAAO,EAAE,qBAAqB,GAC7B,OAAO,CAAC,iCAAiC,CAAC,CA8D5C"}

package/dist/worktree-create.js

@@ -50,9 +50,9 @@ function assertCanonicalWorktreeLocation(targetPath) {
             `There is no override — see Saga T9800 SG-WORKTREE-CANON and ADR decision D009.`), { code: 'E_WT_LOCATION_FORBIDDEN', targetPath, canonicalRoot });
     }
 }
-import { runWorktreeHooks } from './worktree-hooks.js';
+import { runProjectWorktreeHooks, runWorktreeHooks } from './worktree-hooks.js';
 import { applyIncludePatterns, loadWorktreeIncludePatterns } from './worktree-include.js';
-import { installWorktreeDependencies } from './worktree-pnpm.js';
+import { configureWorktreePnpmStore, installWorktreeDependencies, isNpmrcTracked, } from './worktree-pnpm.js';
 /**
  * Apply the T9226 spawn-clone-exclude filter to a newly created worktree.
  *
@@ -185,6 +185,58 @@ function discardBranchName(gitRoot, branch, fallbackRef) {
     gitSync(['branch', '-m', branch, preserved], gitRoot);
     process.stderr.write(`[worktree] preserved unmerged history of ${branch} as ${preserved} (never deleted)\n`);
 }
+/**
+ * What a worker runs when provisioning did not install dependencies (T13524).
+ * It goes through the heavy queue and installs into the worktree's own store:
+ * concurrent installs into the shared global store corrupt `.pnpm/` with
+ * `@@`-prefixed directories (T9938, T13538), and deferral happens exactly when
+ * many spawns are in flight.
+ *
+ * @param worktreePath - The worktree the command installs into.
+ * @returns The shell command.
+ * @task T13524
+ * @task T13538
+ */
+export function workerInstallCommand(worktreePath) {
+    return ('cleo run --wait --class build -- pnpm install --frozen-lockfile --prefer-offline ' +
+        `--store-dir ${shellQuote(join(worktreePath, '.pnpm-store'))}`);
+}
+/**
+ * Run the dependency install for a fresh worktree (T9938 / T11489), recording
+ * the paths in `copiedPaths` / `failedPaths` for the bootstrap envelope.
+ */
+function runWorktreeInstall(worktreePath, gitRoot, appliedPatterns, copiedPaths, failedPaths) {
+    // Both install paths use the worktree's own store: point its .npmrc there and
+    // exclude the store from git before pnpm creates it (T13542).
+    configureWorktreePnpmStore(worktreePath);
+    if (appliedPatterns.some((p) => p.pattern === 'pnpm-lock.yaml')) {
+        if (installWorktreeDependencies(worktreePath, gitRoot)) {
+            copiedPaths.push('node_modules/ (pnpm install)');
+            return { status: 'installed' };
+        }
+        failedPaths.push('pnpm install');
+        return {
+            status: 'failed',
+            reason: 'pnpm install failed',
+            command: workerInstallCommand(worktreePath),
+        };
+    }
+    // T11489 — DHQ-019: guarantee build-ready even when .worktreeinclude does not list pnpm-lock.yaml.
+    const status = ensureWorktreeBuildReady(worktreePath, gitRoot);
+    if (status.action === 'installed') {
+        copiedPaths.push('node_modules/ (pnpm install — auto build-ready)');
+        return { status: 'installed' };
+    }
+    if (status.action === 'install-failed') {
+        failedPaths.push(`pnpm install (auto build-ready): ${status.error ?? 'unknown'}`);
+        return {
+            status: 'failed',
+            reason: status.error ?? 'pnpm install failed',
+            command: workerInstallCommand(worktreePath),
+        };
+    }
+    return { status: 'not-needed', reason: status.action };
+}
 /**
  * Create a git worktree for an agent task.
  *
@@ -388,6 +440,9 @@ async function provisionUnderLock(projectRoot, options, ctx) {
         ? applySpawnScope(worktreePath, spawnScope)
         : null;
     // Run post-create hooks before returning the handle.
+    const postCreateProjectHookResults = reattached
+        ? []
+        : await runProjectWorktreeHooks(options.projectHookExecutor, hooks, 'post-create', worktreePath, taskId);
     const postCreateHookResults = reattached
         ? []
         : await runWorktreeHooks(hooks, 'post-create', worktreePath);
@@ -462,56 +517,80 @@ async function provisionUnderLock(projectRoot, options, ctx) {
     const failedPaths = [];
     // T9938 — Install dependencies with serialized pnpm lock to prevent
     // @@-prefixed doubled-directory corruption in .pnpm/ when multiple
-    // worktrees are provisioned concurrently. Only runs when pnpm-lock.yaml
-    // was included via .worktreeinclude (i.e. the project uses pnpm).
-    // Uses per-worktree pnpm store (.pnpm-store/) for full isolation.
+    // worktrees are provisioned concurrently. Uses per-worktree pnpm store
+    // (.pnpm-store/) for full isolation.
+    //
+    // T13524 — the install is heavy work: it runs only once the caller's
+    // `admitInstall` grants a slot in the machine-wide queue, is deferred to the
+    // worker when the budget is busy, and is skipped under `skipInstall`.
+    let install;
     if (reattached) {
         // T12506: never install into (or otherwise mutate) a re-attached worktree.
+        install = { status: 'not-needed', reason: 're-attached worktree' };
     }
-    else if (appliedPatterns.some((p) => p.pattern === 'pnpm-lock.yaml')) {
-        const installed = installWorktreeDependencies(worktreePath, gitRoot);
-        if (installed) {
-            copiedPaths.push('node_modules/ (pnpm install)');
-        }
-        else {
-            failedPaths.push('pnpm install');
-        }
+    else if (!existsSync(join(worktreePath, 'pnpm-lock.yaml')) ||
+        existsSync(join(worktreePath, 'node_modules'))) {
+        install = {
+            status: 'not-needed',
+            reason: 'no pnpm-lock.yaml, or node_modules already present',
+        };
+    }
+    else if (options.skipInstall) {
+        configureWorktreePnpmStore(worktreePath);
+        install = {
+            status: 'skipped',
+            reason: '--no-install',
+            command: workerInstallCommand(worktreePath),
+        };
     }
     else {
-        // T11489 — DHQ-019: guarantee build-ready even when .worktreeinclude does
-        // not list pnpm-lock.yaml. ensureWorktreeBuildReady is a best-effort pass
-        // that detects pnpm-lock.yaml in the worktree and auto-installs rather than
-        // leaving the worktree non-functional. The structured InstallStatus is
-        // captured in copiedPaths/failedPaths for the spawn envelope.
-        const installStatus = ensureWorktreeBuildReady(worktreePath, gitRoot);
-        if (installStatus.action === 'installed') {
-            copiedPaths.push('node_modules/ (pnpm install — auto build-ready)');
+        const release = options.admitInstall ? await options.admitInstall() : async () => { };
+        if (release === null) {
+            configureWorktreePnpmStore(worktreePath);
+            install = {
+                status: 'deferred',
+                reason: 'the machine-wide heavy-work budget is busy; install deferred to the worker',
+                command: workerInstallCommand(worktreePath),
+            };
         }
-        else if (installStatus.action === 'install-failed') {
-            failedPaths.push(`pnpm install (auto build-ready): ${installStatus.error ?? 'unknown'}`);
+        else {
+            try {
+                install = runWorktreeInstall(worktreePath, gitRoot, appliedPatterns, copiedPaths, failedPaths);
+            }
+            finally {
+                await release();
+            }
         }
-        // 'already-ready' and 'no-lockfile' require no action on copiedPaths/failedPaths.
     }
     // Run post-start hooks after copy-on-write bootstrap.
+    const postStartProjectHookResults = reattached
+        ? []
+        : await runProjectWorktreeHooks(options.projectHookExecutor, hooks, 'post-start', worktreePath, taskId);
     const postStartHookResults = reattached
         ? []
         : await runWorktreeHooks(hooks, 'post-start', worktreePath);
     // Build env vars for agent spawn.
     const pathKey = pathEnvKey();
-    const shimDir = join(projectRoot, '.cleo', 'bin', 'git-shim');
+    // T13522: advertise strict protection only when the caller installed the shim.
+    const shimActive = options.gitShim?.installed === true;
     const envVars = {
         CLEO_AGENT_ROLE: 'worker',
         CLEO_AGENT_CWD: worktreePath,
         CLEO_WORKTREE_ROOT: worktreePath,
         CLEO_WORKTREE_BRANCH: branch,
         CLEO_PROJECT_HASH: projectHash,
-        CLEO_BRANCH_PROTECTION: 'strict',
-        CLEO_SHIM_MARKER: '.cleo/bin/git-shim',
-        // Platform delimiter: ':' would fuse the shim dir with the first real
-        // Windows PATH entry and lose both (T12605).
-        [pathKey]: prependPathEntry(shimDir, process.env[pathKey]),
+        CLEO_BRANCH_PROTECTION: shimActive ? 'strict' : 'unavailable',
+        ...(shimActive && options.gitShim
+            ? {
+                CLEO_SHIM_MARKER: '.cleo/bin/git-shim',
+                // Platform delimiter: ':' would fuse the shim dir with the first real
+                // Windows PATH entry and lose both (T12605).
+                [pathKey]: prependPathEntry(options.gitShim.dir, process.env[pathKey]),
+            }
+            : {}),
     };
     // Build the preamble text for agent context isolation (per acceptance criterion).
+    const npmrcTracked = install.status === 'installed' && isNpmrcTracked(worktreePath);
     const preamble = [
         '## BRANCH ISOLATION PROTOCOL (MANDATORY)',
         '',
@@ -524,11 +603,28 @@ async function provisionUnderLock(projectRoot, options, ctx) {
         '  git checkout, git switch, git branch -b/-D, git reset --hard,',
         '  git worktree add/remove, git rebase, git stash pop, git push --force',
         '',
-        'A git shim is active on your PATH that will exit 77 if you attempt these.',
+        shimActive
+            ? 'A git shim is active on your PATH that will exit 77 if you attempt these, or a push to main.'
+            : 'No git shim could be installed for this worktree: these rules are NOT enforced, so follow them yourself.',
         `Your working directory is: ${worktreePath}`,
         `You are authorized only within \`${worktreePath}\``,
         'All your commits must land on YOUR branch only.',
         '',
+        // T13524: tell the worker to install when provisioning did not.
+        ...(install.command
+            ? [
+                `Dependencies were NOT installed (${install.status}: ${install.reason ?? ''}).`,
+                `Before building or testing, run: ${install.command}`,
+                `Pass the same --store-dir to any other pnpm install/add here (this worktree has its own pnpm store).`,
+                '',
+            ]
+            : npmrcTracked && install.status === 'installed'
+                ? [
+                    // T13541: a tracked .npmrc cannot name this worktree's store.
+                    `This repo tracks .npmrc, so it cannot name this worktree's pnpm store: pass --store-dir ${shellQuote(join(worktreePath, '.pnpm-store'))} to any later pnpm install/add.`,
+                    '',
+                ]
+                : []),
     ].join('\n');
     // T9805 AC3: Append audit log entry for every worktree creation.
     appendWorktreeAuditLog(projectRoot, {
@@ -554,6 +650,7 @@ async function provisionUnderLock(projectRoot, options, ctx) {
         envVars,
         preamble,
         hookResults: postCreateHookResults,
+        projectHookResults: postCreateProjectHookResults,
         appliedPatterns,
         appliedExcludePatterns,
         appliedScope,
@@ -561,7 +658,9 @@ async function provisionUnderLock(projectRoot, options, ctx) {
             copiedPaths,
             failedPaths,
             hookResults: postStartHookResults,
+            projectHookResults: postStartProjectHookResults,
         },
+        install,
     };
 }
 //# sourceMappingURL=worktree-create.js.map

package/dist/worktree-create.js.map

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package/dist/worktree-hooks.d.ts

@@ -9,6 +9,9 @@
  * @task T1161
  */
 import type { WorktreeHook, WorktreeHookResult } from '@cleocode/contracts';
+import type { HookExecutor, HookOutcome } from '@cleocode/contracts/project-hooks.js';
+/** Run shared post-create/start checks through an injected contracts port. */
+export declare function runProjectWorktreeHooks(executor: HookExecutor | undefined, legacyHooks: readonly WorktreeHook[], event: 'post-create' | 'post-start', worktreePath: string, taskId: string): Promise<HookOutcome[]>;
 /**
  * Execute a single declarative hook in the given worktree directory.
  *

package/dist/worktree-hooks.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"worktree-hooks.d.ts","sourceRoot":"","sources":["../src/worktree-hooks.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAGH,OAAO,KAAK,EAAE,YAAY,EAAE,kBAAkB,EAAE,MAAM,qBAAqB,CAAC;AAC5E,OAAO,KAAK,EAAE,YAAY,EAAE,WAAW,EAAE,MAAM,sCAAsC,CAAC;AAKtF,8EAA8E;AAC9E,wBAAsB,uBAAuB,CAC3C,QAAQ,EAAE,YAAY,GAAG,SAAS,EAClC,WAAW,EAAE,SAAS,YAAY,EAAE,EACpC,KAAK,EAAE,aAAa,GAAG,YAAY,EACnC,YAAY,EAAE,MAAM,EACpB,MAAM,EAAE,MAAM,GACb,OAAO,CAAC,WAAW,EAAE,CAAC,CAyCxB;AAED;;;;;;GAMG;AACH,wBAAsB,aAAa,CACjC,IAAI,EAAE,YAAY,EAClB,YAAY,EAAE,MAAM,GACnB,OAAO,CAAC,kBAAkB,CAAC,CAgC7B;AAED;;;;;;;;;;;GAWG;AACH,wBAAsB,gBAAgB,CACpC,KAAK,EAAE,SAAS,YAAY,EAAE,EAC9B,KAAK,EAAE,YAAY,CAAC,OAAO,CAAC,EAC5B,YAAY,EAAE,MAAM,GACnB,OAAO,CAAC,kBAAkB,EAAE,CAAC,CAiB/B"}

package/dist/worktree-hooks.js

@@ -8,9 +8,51 @@
  *
  * @task T1161
  */
-import { execFile } from 'node:child_process';
+import { execFile, execFileSync } from 'node:child_process';
 import { shellInvocation } from '@cleocode/paths';
 const DEFAULT_HOOK_TIMEOUT_MS = 30_000;
+/** Run shared post-create/start checks through an injected contracts port. */
+export async function runProjectWorktreeHooks(executor, legacyHooks, event, worktreePath, taskId) {
+    if (!executor)
+        return [];
+    if (legacyHooks.some((hook) => hook.event === event && hook.projectHookId)) {
+        throw new Error('HOOK_DUPLICATE_REGISTRATION');
+    }
+    let outcomes;
+    try {
+        const projectRoot = execFileSync('git', ['-C', worktreePath, 'rev-parse', '--show-toplevel'], {
+            encoding: 'utf8',
+            timeout: 5000,
+            maxBuffer: 16384,
+            stdio: ['ignore', 'pipe', 'ignore'],
+        }).trim();
+        const gitCommonDir = execFileSync('git', ['-C', worktreePath, 'rev-parse', '--path-format=absolute', '--git-common-dir'], { encoding: 'utf8', timeout: 5000, maxBuffer: 16384, stdio: ['ignore', 'pipe', 'ignore'] }).trim();
+        outcomes = await executor.execute({
+            schemaVersion: 1,
+            projectRoot,
+            gitCommonDir,
+            source: 'worktree',
+            event,
+            worktree: { taskId, path: projectRoot },
+        });
+    }
+    catch {
+        return [
+            {
+                id: 'cleo.project-hooks',
+                status: 'infrastructure-error',
+                blocks: false,
+                code: 'HOOK_INFRASTRUCTURE_ERROR',
+                exitCode: null,
+                signal: null,
+                durationMs: 0,
+            },
+        ];
+    }
+    if (outcomes.some((outcome) => outcome.blocks))
+        throw new Error('HOOK_PROJECT_BLOCK');
+    return outcomes;
+}
 /**
  * Execute a single declarative hook in the given worktree directory.
  *

package/dist/worktree-hooks.js.map

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package/dist/worktree-pnpm.d.ts

@@ -31,4 +31,42 @@
  * @task T9938
  */
 export declare function installWorktreeDependencies(worktreePath: string, projectRoot: string): boolean;
+/**
+ * Point the worktree's pnpm at its own store (`<worktree>/.pnpm-store`) via
+ * `.npmrc`, keeping every other line of an existing `.npmrc`. Called at
+ * provisioning whether or not the install runs now, so a worker that installs
+ * later (deferred or `--no-install`) never touches the shared global store,
+ * where concurrent installs corrupt `.pnpm/` (T9938, T13538). Best-effort.
+ *
+ * A TRACKED `.npmrc` is left alone: editing it would leave a dirty tracked
+ * file the worker might commit. The worker's install command carries
+ * `--store-dir` for that case.
+ *
+ * @param worktreePath - The worktree.
+ * @returns The store directory configured, or `null` when `.npmrc` is tracked
+ *   or could not be written.
+ * @task T9938
+ * @task T13538
+ */
+export declare function configureWorktreePnpmStore(worktreePath: string): string | null;
+/**
+ * Whether the worktree's `.npmrc` is tracked by git (`git ls-files
+ * --error-unmatch`): then it cannot carry the worktree's `store-dir`.
+ *
+ * @param worktreePath - The worktree.
+ * @returns `true` when tracked; `false` when untracked, absent, or git fails.
+ * @task T13538
+ * @task T13541
+ */
+export declare function isNpmrcTracked(worktreePath: string): boolean;
+/**
+ * Append patterns to the repository's `info/exclude` (from `git rev-parse
+ * --git-path info/exclude`), never to a tracked `.gitignore`. Idempotent and
+ * best-effort.
+ *
+ * @param cwd - A directory inside the worktree.
+ * @param patterns - Root-anchored patterns to exclude.
+ * @task T13538
+ */
+export declare function excludeFromGit(cwd: string, patterns: readonly string[]): void;
 //# sourceMappingURL=worktree-pnpm.d.ts.map

package/dist/worktree-pnpm.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"worktree-pnpm.d.ts","sourceRoot":"","sources":["../src/worktree-pnpm.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAoEH;;;;;;;;;;;;;;;;;GAiBG;AACH,wBAAgB,2BAA2B,CAAC,YAAY,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,GAAG,OAAO,CA2C9F;AAED;;;;;;;;;;;;;;;;GAgBG;AACH,wBAAgB,0BAA0B,CAAC,YAAY,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAoB9E;AAED;;;;;;;;GAQG;AACH,wBAAgB,cAAc,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAU5D;AAED;;;;;;;;GAQG;AACH,wBAAgB,cAAc,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,SAAS,MAAM,EAAE,GAAG,IAAI,CAkB7E"}

package/dist/worktree-pnpm.js

@@ -13,8 +13,8 @@
  * @task T9938
  */
 import { execFileSync } from 'node:child_process';
-import { closeSync, existsSync, mkdirSync, openSync, unlinkSync, writeFileSync } from 'node:fs';
-import { join } from 'node:path';
+import { closeSync, existsSync, mkdirSync, openSync, readFileSync, unlinkSync, writeFileSync, } from 'node:fs';
+import { dirname, isAbsolute, join } from 'node:path';
 const PNPM_INSTALL_TIMEOUT_MS = 120_000;
 const LOCK_RETRY_INTERVAL_MS = 500;
 const LOCK_MAX_WAIT_MS = 300_000; // 5 min max wait
@@ -97,15 +97,10 @@ export function installWorktreeDependencies(worktreePath, projectRoot) {
         releaseLock = acquirePnpmLock(projectRoot);
         // Configure per-worktree pnpm store to isolate from global store.
         // This prevents future races when agents run pnpm operations.
-        const npmrcPath = join(worktreePath, '.npmrc');
+        configureWorktreePnpmStore(worktreePath);
+        // --store-dir too: a tracked .npmrc cannot carry it (T13541).
         const storeDir = join(worktreePath, '.pnpm-store');
-        try {
-            writeFileSync(npmrcPath, `store-dir=${storeDir}\n`, 'utf-8');
-        }
-        catch {
-            // Best-effort — pnpm install still works with global store.
-        }
-        execFileSync('pnpm', ['install', '--frozen-lockfile', '--prefer-offline'], {
+        execFileSync('pnpm', ['install', '--frozen-lockfile', '--prefer-offline', '--store-dir', storeDir], {
             cwd: worktreePath,
             encoding: 'utf-8',
             timeout: PNPM_INSTALL_TIMEOUT_MS,
@@ -124,4 +119,95 @@ export function installWorktreeDependencies(worktreePath, projectRoot) {
         }
     }
 }
+/**
+ * Point the worktree's pnpm at its own store (`<worktree>/.pnpm-store`) via
+ * `.npmrc`, keeping every other line of an existing `.npmrc`. Called at
+ * provisioning whether or not the install runs now, so a worker that installs
+ * later (deferred or `--no-install`) never touches the shared global store,
+ * where concurrent installs corrupt `.pnpm/` (T9938, T13538). Best-effort.
+ *
+ * A TRACKED `.npmrc` is left alone: editing it would leave a dirty tracked
+ * file the worker might commit. The worker's install command carries
+ * `--store-dir` for that case.
+ *
+ * @param worktreePath - The worktree.
+ * @returns The store directory configured, or `null` when `.npmrc` is tracked
+ *   or could not be written.
+ * @task T9938
+ * @task T13538
+ */
+export function configureWorktreePnpmStore(worktreePath) {
+    const npmrcPath = join(worktreePath, '.npmrc');
+    const storeDir = join(worktreePath, '.pnpm-store');
+    const tracked = isNpmrcTracked(worktreePath);
+    // Keep the store out of `git add -A`. Not `.npmrc`: info/exclude lives in the
+    // COMMON .git, so excluding it would hide a new .npmrc in the main checkout
+    // too (T13541); the tracked guard plus explicit staging cover it.
+    excludeFromGit(worktreePath, ['/.pnpm-store/']);
+    if (tracked)
+        return null;
+    try {
+        const kept = existsSync(npmrcPath)
+            ? readFileSync(npmrcPath, 'utf-8')
+                .split('\n')
+                .filter((line) => line.trim() !== '' && !/^\s*store-dir\s*=/.test(line))
+            : [];
+        writeFileSync(npmrcPath, `${[...kept, `store-dir=${storeDir}`].join('\n')}\n`, 'utf-8');
+        return storeDir;
+    }
+    catch {
+        return null;
+    }
+}
+/**
+ * Whether the worktree's `.npmrc` is tracked by git (`git ls-files
+ * --error-unmatch`): then it cannot carry the worktree's `store-dir`.
+ *
+ * @param worktreePath - The worktree.
+ * @returns `true` when tracked; `false` when untracked, absent, or git fails.
+ * @task T13538
+ * @task T13541
+ */
+export function isNpmrcTracked(worktreePath) {
+    try {
+        execFileSync('git', ['ls-files', '--error-unmatch', '.npmrc'], {
+            cwd: worktreePath,
+            stdio: 'pipe',
+        });
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
+/**
+ * Append patterns to the repository's `info/exclude` (from `git rev-parse
+ * --git-path info/exclude`), never to a tracked `.gitignore`. Idempotent and
+ * best-effort.
+ *
+ * @param cwd - A directory inside the worktree.
+ * @param patterns - Root-anchored patterns to exclude.
+ * @task T13538
+ */
+export function excludeFromGit(cwd, patterns) {
+    try {
+        const rel = execFileSync('git', ['rev-parse', '--git-path', 'info/exclude'], {
+            cwd,
+            encoding: 'utf-8',
+            stdio: ['pipe', 'pipe', 'pipe'],
+        }).trim();
+        const excludePath = isAbsolute(rel) ? rel : join(cwd, rel);
+        const current = existsSync(excludePath) ? readFileSync(excludePath, 'utf-8') : '';
+        const have = new Set(current.split('\n').map((l) => l.trim()));
+        const missing = patterns.filter((p) => !have.has(p));
+        if (missing.length === 0)
+            return;
+        mkdirSync(dirname(excludePath), { recursive: true });
+        const sep = current === '' || current.endsWith('\n') ? '' : '\n';
+        writeFileSync(excludePath, `${current}${sep}${missing.join('\n')}\n`, 'utf-8');
+    }
+    catch {
+        // Best-effort: an unexcluded store is visible, not harmful.
+    }
+}
 //# sourceMappingURL=worktree-pnpm.js.map

package/dist/worktree-pnpm.js.map

@@ -1 +1 @@
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package/dist/worktree-preflight.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"worktree-preflight.d.ts","sourceRoot":"","sources":["../src/worktree-preflight.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;GAqBG;AAWH;;GAEG;AACH,MAAM,WAAW,sBAAsB;IACrC,uEAAuE;IACvE,YAAY,EAAE,OAAO,CAAC;IACtB,4CAA4C;IAC5C,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,4EAA4E;IAC5E,MAAM,EAAE,OAAO,CAAC;IAChB;;;OAGG;IACH,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB;AAED;;;;;;;;;;;;;;;;;;;;;;GAsBG;AACH,wBAAgB,6BAA6B,CAAC,OAAO,EAAE,MAAM,GAAG,sBAAsB,CAkDrF;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAgB,0BAA0B,CAAC,OAAO,EAAE,MAAM,GAAG,IAAI,CAmBhE;AAMD;;GAEG;AACH,MAAM,WAAW,aAAa;IAC5B,mEAAmE;IACnE,kBAAkB,EAAE,OAAO,CAAC;IAC5B;;;OAGG;IACH,eAAe,EAAE,OAAO,CAAC;IACzB;;;;;;OAMG;IACH,MAAM,EAAE,eAAe,GAAG,WAAW,GAAG,gBAAgB,GAAG,aAAa,CAAC;IACzE,uDAAuD;IACvD,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAED;;;;;;;;;;;;;;;;;;;;;;;GAuBG;AACH,wBAAgB,wBAAwB,CAAC,YAAY,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,GAAG,aAAa,CAsEjG"}

package/dist/worktree-preflight.js

@@ -159,9 +159,19 @@ export function ensureWorktreeBuildReady(worktreePath, projectRoot) {
     process.stderr.write(`[worktree-preflight] node_modules absent in ${worktreePath}; ` +
         `running pnpm install --prefer-offline --ignore-scripts...\n`);
     try {
-        execFileSync('pnpm', ['install', '--prefer-offline', '--ignore-scripts'], {
+        // Into the worktree's own store, never the shared global one (T9938, T13541).
+        execFileSync('pnpm', [
+            'install',
+            '--prefer-offline',
+            '--ignore-scripts',
+            '--store-dir',
+            join(worktreePath, '.pnpm-store'),
+        ], {
             cwd: worktreePath,
             encoding: 'utf-8',
+            // Piped, never 'inherit': an inherited stdout would print pnpm's output
+            // before the spawn's LAFS envelope (ADR-086) and slip past the stdout
+            // guard test, which only sees process.stdout.write (T13493).
             stdio: ['pipe', 'pipe', 'pipe'],
             timeout: 300_000, // 5 minutes
         });

package/dist/worktree-preflight.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@cleocode/worktree",
-  "version": "2026.10.8-rc.ci.675",
+  "version": "2026.10.9-rc.ci.676",
   "private": false,
   "type": "module",
   "description": "Native CLEO worktree backend SDK",
@@ -25,14 +25,14 @@
   "author": "CLEO Code <hello@cleocode.dev>",
   "license": "MIT",
   "dependencies": {
-    "@cleocode/paths": "2026.10.8-rc.ci.675",
-    "@cleocode/contracts": "2026.10.8-rc.ci.675"
+    "@cleocode/contracts": "2026.10.9-rc.ci.676",
+    "@cleocode/paths": "2026.10.9-rc.ci.676"
   },
   "devDependencies": {
     "@types/node": "^24.3.0",
     "typescript": "^6.0.2",
     "vitest": "^4.1.4",
-    "@cleocode/core": "2026.10.8-rc.ci.675"
+    "@cleocode/core": "2026.10.9-rc.ci.676"
   },
   "repository": {
     "type": "git",