@cleocode/worktree 2026.10.12 → 2026.10.13

package/dist/index.d.ts

@@ -20,7 +20,7 @@
  * @task T1161
  * @adr ADR-055
  */
-export type { CreateWorktreeOptions, CreateWorktreeResult, DestroyWorktreeOptions, DestroyWorktreeResult, ListWorktreesOptions, PruneWorktreesOptions, PruneWorktreesResult, WorktreeHook, WorktreeHookResult, WorktreeIncludePattern, WorktreeListEntry, } from '@cleocode/contracts';
+export type { CreateWorktreeOptions, CreateWorktreeResult, DestroyWorktreeOptions, DestroyWorktreeResult, ListWorktreesOptions, PruneWorktreesOptions, PruneWorktreesResult, WorktreeDisposalBlockers, WorktreeHook, WorktreeHookResult, WorktreeIncludePattern, WorktreeKeepMarker, WorktreeListEntry, } from '@cleocode/contracts';
 export type { CopyPathsOptions } from './copy-on-write.js';
 export { copyPathsWithReflock } from './copy-on-write.js';
 export { type AddTransientWorktreeOptions, addTransientWorktree, countUnmergedCommits, DEFAULT_GIT_TIMEOUT_MS, getGitRoot, gitSilent, gitSync, removeTransientWorktree, } from './git.js';
@@ -30,6 +30,7 @@ export { detectPartialWorktree, recoverPartialWorktree } from './recovery.js';
 export type { WorktreeAuditPayload } from './worktree-audit.js';
 export { addWorktreeToSentinelIndex, appendWorktreeAuditLog, removeWorktreeFromSentinelIndex, resolveWorktreeIndexPath, WORKTREE_INDEX_RELATIVE_PATH, WORKTREE_LIFECYCLE_AUDIT_FILE, } from './worktree-audit.js';
 export { createWorktree } from './worktree-create.js';
+export { describeDisposalBlockers, findDisposalBlockers, findUnrecoverableEvidence, findWorktreeDependents, guardWorktreeDisposal, keepMarkerPath, readKeepMarker, } from './worktree-dependents.js';
 export { destroyWorktree } from './worktree-destroy.js';
 export { runProjectWorktreeHooks, runWorktreeHooks } from './worktree-hooks.js';
 export { applyIncludePatterns, loadWorktreeIncludePatterns } from './worktree-include.js';

package/dist/index.d.ts.map

@@ -1 +1 @@
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package/dist/index.js

@@ -28,6 +28,7 @@ export { destroyWorktree as napiDestroyWorktree, integrateWorktree, provisionWor
 export { detectPartialWorktree, recoverPartialWorktree } from './recovery.js';
 export { addWorktreeToSentinelIndex, appendWorktreeAuditLog, removeWorktreeFromSentinelIndex, resolveWorktreeIndexPath, WORKTREE_INDEX_RELATIVE_PATH, WORKTREE_LIFECYCLE_AUDIT_FILE, } from './worktree-audit.js';
 export { createWorktree } from './worktree-create.js';
+export { describeDisposalBlockers, findDisposalBlockers, findUnrecoverableEvidence, findWorktreeDependents, guardWorktreeDisposal, keepMarkerPath, readKeepMarker, } from './worktree-dependents.js';
 export { destroyWorktree } from './worktree-destroy.js';
 export { runProjectWorktreeHooks, runWorktreeHooks } from './worktree-hooks.js';
 export { applyIncludePatterns, loadWorktreeIncludePatterns } from './worktree-include.js';

package/dist/index.js.map

@@ -1 +1 @@
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package/dist/worktree-dependents.d.ts

@@ -0,0 +1,118 @@
+/**
+ * Disposal guard for task worktrees (T13696).
+ *
+ * Disposing a worktree deletes its whole directory. Two things outside it can
+ * still need files inside it:
+ *
+ * 1. Other checkouts that symlink into it — agents share one physical
+ *    `node_modules` across worktrees, so deleting the owner breaks every
+ *    sibling that links to it.
+ * 2. The task's own evidence — a `test-run:` receipt or a gitignored `files:`
+ *    path hashed inside the worktree exists nowhere else, so deleting it makes
+ *    the recorded sha256 unverifiable forever.
+ *
+ * Evidence is kept in place rather than moved: re-validation reads the atom's
+ * `resolvedPath`, then the same path under the project root, and nothing else,
+ * so a moved file would fail it exactly like a deleted one.
+ *
+ * @task T13696
+ */
+import type { EvidenceAtom, WorktreeDisposalBlockers, WorktreeKeepMarker } from '@cleocode/contracts';
+/**
+ * Symlinks in other checkouts that resolve into `worktreePath`.
+ *
+ * @param worktreePath - The worktree about to be disposed.
+ * @param gitRoot - Git root whose registered worktrees are scanned.
+ * @returns The linking paths (empty when nothing depends on it).
+ *
+ * @task T13696
+ */
+export declare function findWorktreeDependents(worktreePath: string, gitRoot: string): string[];
+/**
+ * Evidence files inside `worktreePath` that re-validation could not find once
+ * the worktree is gone: no byte-identical file at the same relative path under
+ * `projectRoot` (where a merged, committed file lands).
+ *
+ * @param worktreePath - The worktree about to be disposed.
+ * @param projectRoot - The main checkout re-validation falls back to.
+ * @param evidence - The task's recorded evidence atoms.
+ * @returns Absolute paths of the files that would be lost.
+ *
+ * @task T13696
+ */
+export declare function findUnrecoverableEvidence(worktreePath: string, projectRoot: string, evidence: readonly EvidenceAtom[]): string[];
+/**
+ * Why `worktreePath` must not be disposed, or `null` when nothing needs it.
+ *
+ * @param worktreePath - The worktree about to be disposed.
+ * @param opts.gitRoot - Git root whose registered worktrees are scanned.
+ * @param opts.projectRoot - The main checkout evidence re-validation falls back to.
+ * @param opts.evidence - The task's recorded evidence atoms.
+ * @returns The blockers, or `null` when disposal is safe.
+ *
+ * @task T13696
+ */
+export declare function findDisposalBlockers(worktreePath: string, opts: {
+    gitRoot: string;
+    projectRoot: string;
+    evidence?: readonly EvidenceAtom[];
+}): WorktreeDisposalBlockers | null;
+/**
+ * One line naming what kept a worktree and why, for logs and `error` fields.
+ *
+ * @param worktreePath - The kept worktree.
+ * @param blockers - What kept it.
+ * @returns A human-readable explanation.
+ *
+ * @task T13696
+ */
+export declare function describeDisposalBlockers(worktreePath: string, blockers: WorktreeDisposalBlockers): string;
+/**
+ * Where the keep marker for `worktreePath` lives: beside the checkout, never
+ * inside it, so `git status` stays clean and nothing can commit it.
+ *
+ * @param worktreePath - The worktree the marker describes.
+ * @returns `<worktreePath>.keep.json`.
+ *
+ * @task T13700
+ */
+export declare function keepMarkerPath(worktreePath: string): string;
+/**
+ * The keep marker for `worktreePath`, or `null` when there is none or it is
+ * unreadable.
+ *
+ * @param worktreePath - The worktree to look up.
+ * @returns The marker, or `null`.
+ *
+ * @task T13700
+ */
+export declare function readKeepMarker(worktreePath: string): WorktreeKeepMarker | null;
+/**
+ * The one disposal guard every path that deletes a worktree calls first
+ * (T13700): dependents scan, evidence check, and the durable keep marker.
+ *
+ * Evidence from an earlier keep is re-checked from the marker, so a batch
+ * prune with no task store still honours it. While anything blocks, the marker
+ * is written (or refreshed) and the blockers returned; once nothing does, the
+ * marker is removed and `null` returned, so the caller may dispose.
+ *
+ * @param worktreePath - The worktree about to be disposed.
+ * @param opts.taskId - Owning task, recorded on a new marker.
+ * @param opts.reason - The disposal asking, recorded on a new marker.
+ * @param opts.gitRoot - Git root whose worktrees are scanned; defaults to the worktree itself.
+ * @param opts.projectRoot - Main checkout evidence falls back to; defaults to the marker's.
+ * @param opts.evidence - The task's recorded evidence atoms, when the caller has them.
+ * @param opts.dryRun - Report only; never write or remove the marker.
+ * @returns The blockers, or `null` when disposal is safe.
+ *
+ * @task T13700
+ */
+export declare function guardWorktreeDisposal(worktreePath: string, opts: {
+    taskId: string | null;
+    reason: string;
+    gitRoot?: string;
+    projectRoot?: string;
+    evidence?: readonly EvidenceAtom[];
+    dryRun?: boolean;
+}): WorktreeDisposalBlockers | null;
+//# sourceMappingURL=worktree-dependents.d.ts.map

package/dist/worktree-dependents.d.ts.map

@@ -0,0 +1 @@
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package/dist/worktree-dependents.js

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+/**
+ * Disposal guard for task worktrees (T13696).
+ *
+ * Disposing a worktree deletes its whole directory. Two things outside it can
+ * still need files inside it:
+ *
+ * 1. Other checkouts that symlink into it — agents share one physical
+ *    `node_modules` across worktrees, so deleting the owner breaks every
+ *    sibling that links to it.
+ * 2. The task's own evidence — a `test-run:` receipt or a gitignored `files:`
+ *    path hashed inside the worktree exists nowhere else, so deleting it makes
+ *    the recorded sha256 unverifiable forever.
+ *
+ * Evidence is kept in place rather than moved: re-validation reads the atom's
+ * `resolvedPath`, then the same path under the project root, and nothing else,
+ * so a moved file would fail it exactly like a deleted one.
+ *
+ * @task T13696
+ */
+import { createHash } from 'node:crypto';
+import { existsSync, lstatSync, readdirSync, readFileSync, realpathSync, rmSync, writeFileSync, } from 'node:fs';
+import { dirname, isAbsolute, join, relative, sep } from 'node:path';
+import { gitSync } from './git.js';
+/** shortcut: at most this many entries are read per scanned directory; raise it if a store outgrows it. */
+const MAX_ENTRIES_PER_DIR = 5000;
+/** Resolve symlinks when the path exists; otherwise `null`. */
+function realOrNull(path) {
+    try {
+        return realpathSync(path);
+    }
+    catch {
+        return null;
+    }
+}
+/** Whether `target` is `root` itself or strictly inside it (both already real paths). */
+function isWithin(root, target) {
+    const rel = relative(root, target);
+    return rel === '' || (!rel.startsWith(`..${sep}`) && rel !== '..' && !isAbsolute(rel));
+}
+/** Directory entries as absolute paths, bounded; `[]` when unreadable. */
+function entries(dir) {
+    try {
+        return readdirSync(dir)
+            .slice(0, MAX_ENTRIES_PER_DIR)
+            .map((name) => join(dir, name));
+    }
+    catch {
+        return [];
+    }
+}
+/**
+ * Paths a checkout could link into another worktree through: `node_modules`
+ * itself, its top-level entries and `.pnpm` entries, and each workspace
+ * package's `node_modules`.
+ */
+function linkCandidates(checkout) {
+    const nm = join(checkout, 'node_modules');
+    const packageNms = entries(join(checkout, 'packages')).map((p) => join(p, 'node_modules'));
+    return [nm, ...entries(nm), ...entries(join(nm, '.pnpm')), ...packageNms];
+}
+/** Every other checkout that could hold a link: registered git worktrees and siblings under the worktree root. */
+function otherCheckouts(worktreePath, gitRoot) {
+    const found = new Set(entries(dirname(worktreePath)));
+    try {
+        for (const line of gitSync(['worktree', 'list', '--porcelain'], gitRoot).split('\n')) {
+            if (line.startsWith('worktree '))
+                found.add(line.slice('worktree '.length));
+        }
+    }
+    catch {
+        // Not a git checkout: the sibling scan still runs.
+    }
+    return [...found];
+}
+/**
+ * Symlinks in other checkouts that resolve into `worktreePath`.
+ *
+ * @param worktreePath - The worktree about to be disposed.
+ * @param gitRoot - Git root whose registered worktrees are scanned.
+ * @returns The linking paths (empty when nothing depends on it).
+ *
+ * @task T13696
+ */
+export function findWorktreeDependents(worktreePath, gitRoot) {
+    const self = realOrNull(worktreePath);
+    if (self === null)
+        return [];
+    const dependents = [];
+    for (const checkout of otherCheckouts(worktreePath, gitRoot)) {
+        const real = realOrNull(checkout);
+        if (real === null || isWithin(self, real))
+            continue;
+        for (const candidate of linkCandidates(checkout)) {
+            let isLink = false;
+            try {
+                isLink = lstatSync(candidate).isSymbolicLink();
+            }
+            catch {
+                continue;
+            }
+            if (!isLink)
+                continue;
+            const target = realOrNull(candidate);
+            if (target !== null && isWithin(self, target))
+                dependents.push(candidate);
+        }
+    }
+    return dependents;
+}
+/** sha256 of a file, or `null` when it cannot be read. */
+function sha256Of(path) {
+    try {
+        return createHash('sha256').update(readFileSync(path)).digest('hex');
+    }
+    catch {
+        return null;
+    }
+}
+/** The hashed files an evidence atom references, with the sha256 recorded at verify time. */
+function hashedFiles(atom) {
+    if (atom.kind === 'files')
+        return atom.files;
+    if (atom.kind === 'test-run' || atom.kind === 'qa-run')
+        return [atom];
+    return [];
+}
+/**
+ * Evidence files inside `worktreePath` with no byte-identical copy at the same
+ * relative path under `projectRoot`; with `projectRoot` `null`, every one.
+ */
+function unrecoverableEvidenceFiles(worktreePath, projectRoot, evidence) {
+    const self = realOrNull(worktreePath);
+    if (self === null)
+        return [];
+    const lost = new Map();
+    for (const atom of evidence) {
+        for (const file of hashedFiles(atom)) {
+            const abs = file.resolvedPath ?? (isAbsolute(file.path) ? file.path : null);
+            const real = abs === null ? null : realOrNull(abs);
+            if (real === null || !isWithin(self, real))
+                continue;
+            const counterpart = projectRoot === null ? null : join(projectRoot, relative(self, real));
+            if (counterpart === null ||
+                !existsSync(counterpart) ||
+                sha256Of(counterpart) !== file.sha256) {
+                lost.set(real, file.sha256);
+            }
+        }
+    }
+    return [...lost].map(([path, sha256]) => ({ path, sha256 }));
+}
+/**
+ * Evidence files inside `worktreePath` that re-validation could not find once
+ * the worktree is gone: no byte-identical file at the same relative path under
+ * `projectRoot` (where a merged, committed file lands).
+ *
+ * @param worktreePath - The worktree about to be disposed.
+ * @param projectRoot - The main checkout re-validation falls back to.
+ * @param evidence - The task's recorded evidence atoms.
+ * @returns Absolute paths of the files that would be lost.
+ *
+ * @task T13696
+ */
+export function findUnrecoverableEvidence(worktreePath, projectRoot, evidence) {
+    return unrecoverableEvidenceFiles(worktreePath, projectRoot, evidence).map((f) => f.path);
+}
+/**
+ * Why `worktreePath` must not be disposed, or `null` when nothing needs it.
+ *
+ * @param worktreePath - The worktree about to be disposed.
+ * @param opts.gitRoot - Git root whose registered worktrees are scanned.
+ * @param opts.projectRoot - The main checkout evidence re-validation falls back to.
+ * @param opts.evidence - The task's recorded evidence atoms.
+ * @returns The blockers, or `null` when disposal is safe.
+ *
+ * @task T13696
+ */
+export function findDisposalBlockers(worktreePath, opts) {
+    const dependents = findWorktreeDependents(worktreePath, opts.gitRoot);
+    const evidence = findUnrecoverableEvidence(worktreePath, opts.projectRoot, opts.evidence ?? []);
+    return dependents.length > 0 || evidence.length > 0 ? { dependents, evidence } : null;
+}
+/**
+ * One line naming what kept a worktree and why, for logs and `error` fields.
+ *
+ * @param worktreePath - The kept worktree.
+ * @param blockers - What kept it.
+ * @returns A human-readable explanation.
+ *
+ * @task T13696
+ */
+export function describeDisposalBlockers(worktreePath, blockers) {
+    const parts = [];
+    if (blockers.dependents.length > 0) {
+        parts.push(`${blockers.dependents.length} link(s) from other checkouts resolve into it (${blockers.dependents.join(', ')})`);
+    }
+    if (blockers.evidence.length > 0) {
+        parts.push(`${blockers.evidence.length} evidence file(s) exist only there (${blockers.evidence.join(', ')})`);
+    }
+    return `Worktree ${worktreePath} kept: ${parts.join('; ')}. Remove the links or re-verify, then dispose it.`;
+}
+/**
+ * Where the keep marker for `worktreePath` lives: beside the checkout, never
+ * inside it, so `git status` stays clean and nothing can commit it.
+ *
+ * @param worktreePath - The worktree the marker describes.
+ * @returns `<worktreePath>.keep.json`.
+ *
+ * @task T13700
+ */
+export function keepMarkerPath(worktreePath) {
+    return `${worktreePath.replace(/[\\/]+$/, '')}.keep.json`;
+}
+/**
+ * The keep marker for `worktreePath`, or `null` when there is none or it is
+ * unreadable.
+ *
+ * @param worktreePath - The worktree to look up.
+ * @returns The marker, or `null`.
+ *
+ * @task T13700
+ */
+export function readKeepMarker(worktreePath) {
+    let parsed;
+    try {
+        parsed = JSON.parse(readFileSync(keepMarkerPath(worktreePath), 'utf-8'));
+    }
+    catch {
+        return null;
+    }
+    return {
+        taskId: typeof parsed.taskId === 'string' ? parsed.taskId : null,
+        reason: typeof parsed.reason === 'string' ? parsed.reason : 'unknown',
+        projectRoot: typeof parsed.projectRoot === 'string' ? parsed.projectRoot : null,
+        dependents: Array.isArray(parsed.dependents) ? parsed.dependents : [],
+        evidence: Array.isArray(parsed.evidence) ? parsed.evidence : [],
+        keptAt: typeof parsed.keptAt === 'string' ? parsed.keptAt : '',
+    };
+}
+/**
+ * The one disposal guard every path that deletes a worktree calls first
+ * (T13700): dependents scan, evidence check, and the durable keep marker.
+ *
+ * Evidence from an earlier keep is re-checked from the marker, so a batch
+ * prune with no task store still honours it. While anything blocks, the marker
+ * is written (or refreshed) and the blockers returned; once nothing does, the
+ * marker is removed and `null` returned, so the caller may dispose.
+ *
+ * @param worktreePath - The worktree about to be disposed.
+ * @param opts.taskId - Owning task, recorded on a new marker.
+ * @param opts.reason - The disposal asking, recorded on a new marker.
+ * @param opts.gitRoot - Git root whose worktrees are scanned; defaults to the worktree itself.
+ * @param opts.projectRoot - Main checkout evidence falls back to; defaults to the marker's.
+ * @param opts.evidence - The task's recorded evidence atoms, when the caller has them.
+ * @param opts.dryRun - Report only; never write or remove the marker.
+ * @returns The blockers, or `null` when disposal is safe.
+ *
+ * @task T13700
+ */
+export function guardWorktreeDisposal(worktreePath, opts) {
+    const marker = readKeepMarker(worktreePath);
+    const projectRoot = opts.projectRoot ?? marker?.projectRoot ?? null;
+    const evidence = [...(opts.evidence ?? [])];
+    if (marker !== null && marker.evidence.length > 0) {
+        evidence.push({
+            kind: 'files',
+            files: marker.evidence.map((f) => ({ ...f, resolvedPath: f.path })),
+        });
+    }
+    const dependents = findWorktreeDependents(worktreePath, opts.gitRoot ?? worktreePath);
+    const lost = unrecoverableEvidenceFiles(worktreePath, projectRoot, evidence);
+    const blockers = dependents.length > 0 || lost.length > 0
+        ? { dependents, evidence: lost.map((f) => f.path) }
+        : null;
+    if (opts.dryRun === true)
+        return blockers;
+    try {
+        if (blockers !== null) {
+            const next = {
+                taskId: marker?.taskId ?? opts.taskId,
+                reason: marker?.reason ?? opts.reason,
+                projectRoot,
+                dependents,
+                evidence: lost,
+                keptAt: marker?.keptAt || new Date().toISOString(),
+            };
+            writeFileSync(keepMarkerPath(worktreePath), `${JSON.stringify(next, null, 2)}\n`, 'utf-8');
+        }
+        else if (marker !== null) {
+            rmSync(keepMarkerPath(worktreePath), { force: true });
+        }
+    }
+    catch {
+        // The marker is a record, not the guard: the scan above already decided.
+    }
+    return blockers;
+}
+//# sourceMappingURL=worktree-dependents.js.map

package/dist/worktree-dependents.js.map

@@ -0,0 +1 @@
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package/dist/worktree-destroy.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"worktree-destroy.d.ts","sourceRoot":"","sources":["../src/worktree-destroy.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAGH,OAAO,KAAK,EAAE,sBAAsB,EAAE,qBAAqB,EAAE,MAAM,qBAAqB,CAAC;AASzF;;;;;;;;;;;;;;;;;;;;;;GAsBG;AACH,wBAAsB,eAAe,CACnC,WAAW,EAAE,MAAM,EACnB,OAAO,EAAE,sBAAsB,GAC9B,OAAO,CAAC,qBAAqB,CAAC,CAqLhC"}
+{"version":3,"file":"worktree-destroy.d.ts","sourceRoot":"","sources":["../src/worktree-destroy.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAGH,OAAO,KAAK,EAAE,sBAAsB,EAAE,qBAAqB,EAAE,MAAM,qBAAqB,CAAC;AAUzF;;;;;;;;;;;;;;;;;;;;;;GAsBG;AACH,wBAAsB,eAAe,CACnC,WAAW,EAAE,MAAM,EACnB,OAAO,EAAE,sBAAsB,GAC9B,OAAO,CAAC,qBAAqB,CAAC,CAuNhC"}

package/dist/worktree-destroy.js

@@ -14,6 +14,7 @@ import { countUnmergedCommits, getGitRoot, gitSilent, gitSync } from './git.js';
 import { destroyWorktree as napiDestroyWorktree } from './napi-binding.js';
 import { computeProjectHash, resolveTaskWorktreePath } from './paths.js';
 import { appendWorktreeAuditLog, removeWorktreeFromSentinelIndex } from './worktree-audit.js';
+import { describeDisposalBlockers, guardWorktreeDisposal } from './worktree-dependents.js';
 import { runWorktreeHooks } from './worktree-hooks.js';
 import { locateTaskWorktree } from './worktree-locate.js';
 import { releaseWorktreeTaskLock } from './worktree-lock.js';
@@ -79,6 +80,39 @@ export async function destroyWorktree(projectRoot, options) {
             hookResults,
         };
     }
+    // T13696: never delete files something outside the worktree still needs —
+    // a sibling's symlinked node_modules, or evidence that exists only here.
+    if (existsSync(worktreePath)) {
+        const kept = guardWorktreeDisposal(worktreePath, {
+            taskId,
+            reason: options.reason ?? 'manual',
+            gitRoot,
+            projectRoot,
+            evidence: options.evidence,
+        });
+        if (kept !== null) {
+            const message = describeDisposalBlockers(worktreePath, kept);
+            appendWorktreeAuditLog(projectRoot, {
+                action: 'destroy',
+                xdgPath: worktreePath,
+                taskId,
+                branch,
+                reason: options.reason ?? 'manual',
+                success: false,
+                error: message,
+            });
+            return {
+                taskId,
+                worktreeRemoved: false,
+                branchDeleted: false,
+                error: message,
+                dirty,
+                force,
+                hookResults,
+                kept,
+            };
+        }
+    }
     // Step 2: Run pre-remove hooks.
     if (hooks.length > 0 && existsSync(worktreePath)) {
         try {

package/dist/worktree-destroy.js.map

@@ -1 +1 @@
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package/dist/worktree-prune.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"worktree-prune.d.ts","sourceRoot":"","sources":["../src/worktree-prune.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;GAwBG;AAKH,OAAO,KAAK,EAAE,qBAAqB,EAAE,oBAAoB,EAAE,MAAM,qBAAqB,CAAC;AAEvF,OAAO,EAEL,cAAc,IAAI,SAAS,EAE5B,MAAM,mBAAmB,CAAC;AAK3B;;;;;;;;;;;;;;;;;;;GAmBG;AACH,wBAAgB,cAAc,CAAC,OAAO,EAAE,qBAAqB,GAAG,oBAAoB,CA4DnF;AAqZD;;;;;;;;;;;;;;;;;;;GAmBG;AACH,wBAAgB,sBAAsB,CACpC,OAAO,EAAE,MAAM,EACf,iBAAiB,EAAE,MAAM,GACxB,UAAU,CAAC,OAAO,SAAS,CAAC,GAAG,IAAI,CAMrC"}
+{"version":3,"file":"worktree-prune.d.ts","sourceRoot":"","sources":["../src/worktree-prune.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;GAwBG;AAKH,OAAO,KAAK,EAAE,qBAAqB,EAAE,oBAAoB,EAAE,MAAM,qBAAqB,CAAC;AAEvF,OAAO,EAEL,cAAc,IAAI,SAAS,EAE5B,MAAM,mBAAmB,CAAC;AAM3B;;;;;;;;;;;;;;;;;;;GAmBG;AACH,wBAAgB,cAAc,CAAC,OAAO,EAAE,qBAAqB,GAAG,oBAAoB,CA4DnF;AAmaD;;;;;;;;;;;;;;;;;;;GAmBG;AACH,wBAAgB,sBAAsB,CACpC,OAAO,EAAE,MAAM,EACf,iBAAiB,EAAE,MAAM,GACxB,UAAU,CAAC,OAAO,SAAS,CAAC,GAAG,IAAI,CAMrC"}

package/dist/worktree-prune.js

@@ -24,12 +24,13 @@
  * @task T10204
  */
 import { execFileSync } from 'node:child_process';
-import { appendFileSync, existsSync, mkdirSync, readdirSync } from 'node:fs';
+import { appendFileSync, existsSync, mkdirSync, readdirSync, statSync } from 'node:fs';
 import { join } from 'node:path';
 import { getGitRoot, gitSilent } from './git.js';
 import { destroyWorktree as napiDestroyWorktree, pruneWorktrees as napiPrune, removeDir as napiRemoveDir, } from './napi-binding.js';
 import { computeProjectHash, resolveWorktreeRootForHash } from './paths.js';
 import { appendWorktreeAuditLog, removeWorktreeFromSentinelIndex } from './worktree-audit.js';
+import { describeDisposalBlockers, guardWorktreeDisposal } from './worktree-dependents.js';
 import { releaseWorktreeTaskLock } from './worktree-lock.js';
 /**
  * Prune orphaned agent worktrees for a project.
@@ -164,6 +165,14 @@ function safeReaddir(dir) {
  */
 function classifyPruneCandidate(entry, preserveTaskIds, idleDays, worktreeRoot) {
     const path = join(worktreeRoot, entry);
+    // Only directories are worktrees; a sibling file (e.g. a `.keep.json` marker) never is.
+    try {
+        if (!statSync(path).isDirectory())
+            return null;
+    }
+    catch {
+        return null;
+    }
     if (preserveTaskIds !== undefined) {
         // T11996: entries in the preserve set are NEVER eligible for pruning,
         // regardless of idle age. Idle-age is only applied to orphan entries
@@ -341,6 +350,13 @@ function quarantineWorktreeDir(worktreePath, taskId, projectRoot, reason) {
  */
 function pruneSingleEntry(decision, gitRoot, projectRoot, removed, quarantined, errors) {
     const { taskId, path, reason } = decision;
+    // T13696/T13700: never delete a worktree another checkout links into, or
+    // one an earlier disposal kept (its marker's evidence is re-checked here).
+    const kept = guardWorktreeDisposal(path, { taskId, reason, gitRoot, projectRoot });
+    if (kept !== null) {
+        errors.push({ path, reason: describeDisposalBlockers(path, kept) });
+        return;
+    }
     // T11996: Dirty/unpushed guard — quarantine instead of deleting.
     const dirty = isWorktreeDirty(path);
     const unpushed = dirty ? false : hasUnpushedCommits(path);

package/dist/worktree-prune.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@cleocode/worktree",
-  "version": "2026.10.12",
+  "version": "2026.10.13",
   "private": false,
   "type": "module",
   "description": "Native CLEO worktree backend SDK",
@@ -25,14 +25,14 @@
   "author": "CLEO Code <hello@cleocode.dev>",
   "license": "MIT",
   "dependencies": {
-    "@cleocode/contracts": "2026.10.12",
-    "@cleocode/paths": "2026.10.12"
+    "@cleocode/contracts": "2026.10.13",
+    "@cleocode/paths": "2026.10.13"
   },
   "devDependencies": {
     "@types/node": "^24.3.0",
     "typescript": "^6.0.2",
     "vitest": "^4.1.4",
-    "@cleocode/core": "2026.10.12"
+    "@cleocode/core": "2026.10.13"
   },
   "repository": {
     "type": "git",