@cleocode/nexus 2026.9.15 → 2026.9.17

package/dist/src/pipeline/community-processor.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"community-processor.d.ts","sourceRoot":"","sources":["../../../src/pipeline/community-processor.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAmCG;AAMH,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,sBAAsB,CAAC;AAsF3D,wCAAwC;AACxC,MAAM,WAAW,aAAa;IAC5B,qCAAqC;IACrC,EAAE,EAAE,MAAM,CAAC;IACX,8EAA8E;IAC9E,cAAc,EAAE,MAAM,CAAC;IACvB,gCAAgC;IAChC,WAAW,EAAE,MAAM,CAAC;IACpB,6DAA6D;IAC7D,QAAQ,EAAE,MAAM,CAAC;CAClB;AAED,uDAAuD;AACvD,MAAM,WAAW,mBAAmB;IAClC,oCAAoC;IACpC,MAAM,EAAE,MAAM,CAAC;IACf,6DAA6D;IAC7D,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,8CAA8C;AAC9C,MAAM,WAAW,wBAAwB;IACvC,sDAAsD;IACtD,WAAW,EAAE,aAAa,EAAE,CAAC;IAC7B,2DAA2D;IAC3D,WAAW,EAAE,mBAAmB,EAAE,CAAC;IACnC,KAAK,EAAE;QACL,iDAAiD;QACjD,gBAAgB,EAAE,MAAM,CAAC;QACzB,0DAA0D;QAC1D,UAAU,EAAE,MAAM,CAAC;QACnB,wDAAwD;QACxD,cAAc,EAAE,MAAM,CAAC;QACvB,oEAAoE;QACpE,oBAAoB,CAAC,EAAE,MAAM,CAAC;QAC9B,oDAAoD;QACpD,UAAU,CAAC,EAAE,MAAM,CAAC;KACrB,CAAC;CACH;AAmCD;;;;;;;;;;;;;;;;;;;;;;;GAuBG;AACH,wBAAsB,iBAAiB,CAAC,KAAK,EAAE,cAAc,GAAG,OAAO,CAAC,wBAAwB,CAAC,CA2GhG"}

package/dist/src/pipeline/community-processor.js

@@ -45,6 +45,26 @@ import { confidenceLabelFromNumeric } from '@cleocode/contracts';
 const _require = createRequire(import.meta.url);
 // eslint-disable-next-line @typescript-eslint/no-require-imports
 const GraphCtor = _require('graphology');
+/** Fixed Leiden seed: the same graph must always yield the same communities (T12315). */
+const LEIDEN_SEED = 0x6c65_6964;
+/**
+ * Deterministic 32-bit PRNG (mulberry32) for Leiden's refinement step.
+ *
+ * The library defaults to `Math.random`, which made two analyses of identical
+ * source publish different community partitions — so no rebuild, incremental
+ * or full, could be compared to another, and `clusters`/`flows` answers
+ * changed between runs without any source change.
+ */
+function seededRandom(seed) {
+    let state = seed >>> 0;
+    return () => {
+        state = (state + 0x6d2b79f5) >>> 0;
+        let t = state;
+        t = Math.imul(t ^ (t >>> 15), t | 1);
+        t ^= t + Math.imul(t ^ (t >>> 7), t | 61);
+        return ((t ^ (t >>> 14)) >>> 0) / 4_294_967_296;
+    };
+}
 // eslint-disable-next-line @typescript-eslint/no-require-imports
 const leidenAlgo = _require('@aflsolutions/graphology-communities-leiden');
 // ============================================================================
@@ -131,6 +151,7 @@ export async function detectCommunities(graph) {
     const t0 = performance.now();
     const details = leidenAlgo.detailed(gGraph, {
         resolution: LEIDEN_RESOLUTION,
+        rng: seededRandom(LEIDEN_SEED),
     });
     const durationMs = performance.now() - t0;
     process.stderr.write(`[nexus] Phase 5: Leiden found ${details.count} raw communities in ${durationMs.toFixed(0)}ms\n`);

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package/dist/src/pipeline/extractors/typescript-extractor.d.ts.map

@@ -1 +1 @@
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package/dist/src/pipeline/extractors/typescript-extractor.js

@@ -55,8 +55,14 @@ function extractDocSummary(node) {
     while (sibling?.type === 'decorator') {
         sibling = sibling.previousSibling;
     }
-    if (!sibling || sibling.type !== 'comment')
+    if (!sibling)
         return undefined;
+    // Decide from the sibling's TEXT, not its `type` (T12315). node-tree-sitter
+    // 0.21 resolves `type` natively by node id, and a doc comment directly inside
+    // an interface body can share its id with that body — so it was reported as
+    // `interface_body`, and whether it was depended on per-process parser state.
+    // Two full rebuilds of identical bytes disagreed on 46 doc summaries. The
+    // text comes from the node's own recorded span and is not ambiguous.
     const raw = sibling.text;
     if (!raw.startsWith('/**') && !raw.startsWith('//'))
         return undefined;

package/dist/src/pipeline/extractors/typescript-extractor.js.map

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package/dist/src/pipeline/filesystem-walker.d.ts

@@ -40,6 +40,27 @@ export interface ScannedFile {
      */
     language: string | null;
 }
+/** Previously observed metadata and content hash of one file. */
+export interface KnownFileFingerprint {
+    /** File size in bytes when the hash was taken. */
+    size: number;
+    /** Modification time when the hash was taken. */
+    mtimeMs: number;
+    /** SHA-256 of the file's bytes. */
+    contentHash: string;
+}
+/** Optional walker behaviour. */
+export interface WalkOptions {
+    /**
+     * Files whose size AND mtime still equal a known record reuse its hash
+     * instead of being read. Only a freshness check should pass this: an index
+     * build must hash what it parses. A metadata-preserving edit can defeat it,
+     * which is why the published generation still verifies by content.
+     */
+    knownFiles?: ReadonlyMap<string, KnownFileFingerprint>;
+    /** Called for every file whose bytes were actually read and hashed. */
+    onHashed?: (path: string) => void;
+}
 /** Floor for one ignore-assessment batch, before the per-path allowance. */
 export declare const GIT_IGNORE_BASE_TIMEOUT_MS = 10000;
 /** Added per path in the batch, so the budget scales with the work asked of git. */
@@ -57,7 +78,10 @@ export declare const GIT_IGNORE_TIMEOUT_ENV = "CLEO_NEXUS_GIT_TIMEOUT_MS";
  *
  * @param repoPath - Absolute path to the repository root
  * @param onProgress - Optional progress callback invoked for each processed file
+ * @param onFileReport - Optional receiver for exclusion, size and stat outcomes
+ * @param includedRepositories - Explicitly included nested repository paths
+ * @param options - Metadata fast path for freshness checks (T12316)
  * @returns Array of scanned file entries sorted by relative path
  */
-export declare function walkRepositoryPaths(repoPath: string, onProgress?: (current: number, total: number, filePath: string) => void, onFileReport?: (report: GraphIndexFileReport) => void, includedRepositories?: readonly string[]): Promise<ScannedFile[]>;
+export declare function walkRepositoryPaths(repoPath: string, onProgress?: (current: number, total: number, filePath: string) => void, onFileReport?: (report: GraphIndexFileReport) => void, includedRepositories?: readonly string[], options?: WalkOptions): Promise<ScannedFile[]>;
 //# sourceMappingURL=filesystem-walker.d.ts.map

package/dist/src/pipeline/filesystem-walker.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"filesystem-walker.d.ts","sourceRoot":"","sources":["../../../src/pipeline/filesystem-walker.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;GAoBG;AAOH,OAAO,KAAK,EAAE,oBAAoB,EAAE,MAAM,qBAAqB,CAAC;AAuDhE;;;;GAIG;AACH,MAAM,WAAW,WAAW;IAC1B,wEAAwE;IACxE,IAAI,EAAE,MAAM,CAAC;IACb,0BAA0B;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,4DAA4D;IAC5D,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,kDAAkD;IAClD,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB;;;OAGG;IACH,QAAQ,EAAE,MAAM,GAAG,IAAI,CAAC;CACzB;AA0BD,4EAA4E;AAC5E,eAAO,MAAM,0BAA0B,QAAS,CAAC;AAEjD,oFAAoF;AACpF,eAAO,MAAM,8BAA8B,KAAK,CAAC;AAEjD,2DAA2D;AAC3D,eAAO,MAAM,oBAAoB,QAAS,CAAC;AAK3C,2EAA2E;AAC3E,eAAO,MAAM,sBAAsB,8BAA8B,CAAC;AAoHlE;;;;;;;;;;GAUG;AACH,wBAAsB,mBAAmB,CACvC,QAAQ,EAAE,MAAM,EAChB,UAAU,CAAC,EAAE,CAAC,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,KAAK,IAAI,EACvE,YAAY,CAAC,EAAE,CAAC,MAAM,EAAE,oBAAoB,KAAK,IAAI,EACrD,oBAAoB,GAAE,SAAS,MAAM,EAAO,GAC3C,OAAO,CAAC,WAAW,EAAE,CAAC,CAuKxB"}
+{"version":3,"file":"filesystem-walker.d.ts","sourceRoot":"","sources":["../../../src/pipeline/filesystem-walker.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;GAoBG;AAOH,OAAO,KAAK,EAAE,oBAAoB,EAAE,MAAM,qBAAqB,CAAC;AAuDhE;;;;GAIG;AACH,MAAM,WAAW,WAAW;IAC1B,wEAAwE;IACxE,IAAI,EAAE,MAAM,CAAC;IACb,0BAA0B;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,4DAA4D;IAC5D,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,kDAAkD;IAClD,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB;;;OAGG;IACH,QAAQ,EAAE,MAAM,GAAG,IAAI,CAAC;CACzB;AAED,iEAAiE;AACjE,MAAM,WAAW,oBAAoB;IACnC,kDAAkD;IAClD,IAAI,EAAE,MAAM,CAAC;IACb,iDAAiD;IACjD,OAAO,EAAE,MAAM,CAAC;IAChB,mCAAmC;IACnC,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,iCAAiC;AACjC,MAAM,WAAW,WAAW;IAC1B;;;;;OAKG;IACH,UAAU,CAAC,EAAE,WAAW,CAAC,MAAM,EAAE,oBAAoB,CAAC,CAAC;IACvD,uEAAuE;IACvE,QAAQ,CAAC,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,IAAI,CAAC;CACnC;AA0BD,4EAA4E;AAC5E,eAAO,MAAM,0BAA0B,QAAS,CAAC;AAEjD,oFAAoF;AACpF,eAAO,MAAM,8BAA8B,KAAK,CAAC;AAEjD,2DAA2D;AAC3D,eAAO,MAAM,oBAAoB,QAAS,CAAC;AAK3C,2EAA2E;AAC3E,eAAO,MAAM,sBAAsB,8BAA8B,CAAC;AAoHlE;;;;;;;;;;;;;GAaG;AACH,wBAAsB,mBAAmB,CACvC,QAAQ,EAAE,MAAM,EAChB,UAAU,CAAC,EAAE,CAAC,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,KAAK,IAAI,EACvE,YAAY,CAAC,EAAE,CAAC,MAAM,EAAE,oBAAoB,KAAK,IAAI,EACrD,oBAAoB,GAAE,SAAS,MAAM,EAAO,EAC5C,OAAO,GAAE,WAAgB,GACxB,OAAO,CAAC,WAAW,EAAE,CAAC,CA+KxB"}

package/dist/src/pipeline/filesystem-walker.js

@@ -215,9 +215,12 @@ function runGitCheckIgnore(repoPath, batch, timeout) {
  *
  * @param repoPath - Absolute path to the repository root
  * @param onProgress - Optional progress callback invoked for each processed file
+ * @param onFileReport - Optional receiver for exclusion, size and stat outcomes
+ * @param includedRepositories - Explicitly included nested repository paths
+ * @param options - Metadata fast path for freshness checks (T12316)
  * @returns Array of scanned file entries sorted by relative path
  */
-export async function walkRepositoryPaths(repoPath, onProgress, onFileReport, includedRepositories = []) {
+export async function walkRepositoryPaths(repoPath, onProgress, onFileReport, includedRepositories = [], options = {}) {
     // Load root .gitignore and .cleoignore patterns
     const gitignorePatterns = await readIgnorePatterns(path.join(repoPath, '.gitignore'));
     const cleoignorePatterns = await readIgnorePatterns(path.join(repoPath, '.cleoignore'));
@@ -344,13 +347,22 @@ export async function walkRepositoryPaths(repoPath, onProgress, onFileReport, in
                 });
                 return null;
             }
+            const known = options.knownFiles?.get(relPath);
+            let contentHash;
+            if (known && known.size === stat.size && known.mtimeMs === stat.mtimeMs) {
+                contentHash = known.contentHash;
+            }
+            else {
+                contentHash = createHash('sha256')
+                    .update(await fs.readFile(fullPath))
+                    .digest('hex');
+                options.onHashed?.(relPath);
+            }
             return {
                 path: relPath,
                 size: stat.size,
                 mtimeMs: stat.mtimeMs,
-                contentHash: createHash('sha256')
-                    .update(await fs.readFile(fullPath))
-                    .digest('hex'),
+                contentHash,
                 language: detectLanguageFromPath(relPath),
             };
         }));

package/dist/src/pipeline/filesystem-walker.js.map

@@ -1 +1 @@
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package/dist/src/pipeline/index.d.ts

@@ -49,7 +49,7 @@ export type { EntryPointScoreResult } from './entry-point-scoring.js';
 export { calculateEntryPointScore, isTestFile, isUtilityFile, } from './entry-point-scoring.js';
 export type { ExtractedCall, ExtractedHeritage, ExtractedReExport, TypeScriptExtractionResult, } from './extractors/typescript-extractor.js';
 export { extractCalls, extractHeritage, extractImports, extractReExports, extractTypeScript, } from './extractors/typescript-extractor.js';
-export type { ScannedFile } from './filesystem-walker.js';
+export type { KnownFileFingerprint, ScannedFile, WalkOptions } from './filesystem-walker.js';
 export { walkRepositoryPaths } from './filesystem-walker.js';
 export type { HeritageMap, HeritageProcessingResult } from './heritage-processor.js';
 export { buildHeritageMap, processHeritage } from './heritage-processor.js';
@@ -58,6 +58,8 @@ export { buildBarrelExportMap, buildImportResolutionContext, isFileInPackageDir,
 export type { KnowledgeGraph, NexusDbInsert, NexusTables } from './knowledge-graph.js';
 export { createKnowledgeGraph } from './knowledge-graph.js';
 export { detectLanguageFromPath, isIndexableFile } from './language-detection.js';
+export type { FileExtraction } from './parse-cache.js';
+export { computeExtractorFingerprint, decodeParseCacheEntry, encodeParseCacheEntry, } from './parse-cache.js';
 export type { ParseLoopOptions, ParseLoopResult } from './parse-loop.js';
 export { runParseLoop } from './parse-loop.js';
 export type { ProcessDetectionConfig, ProcessDetectionResult, ProcessInfo, ProcessStep, } from './process-processor.js';
@@ -73,7 +75,7 @@ export type { SymbolDefinition, SymbolTable } from './symbol-table.js';
 export { CALLABLE_KINDS, CLASS_KINDS, createSymbolTable } from './symbol-table.js';
 export type { WorkerPool } from './workers/worker-pool.js';
 export { createWorkerPool } from './workers/worker-pool.js';
-import type { GraphIndexFileReport, GraphIndexReferenceReport, GraphPublicationRows, ParserExecutionLimits, ParserExecutionPort } from '@cleocode/contracts';
+import type { GraphIndexFileReport, GraphIndexReferenceReport, GraphIndexRunSummary, GraphParseCacheEntry, GraphPublicationRows, ParserExecutionLimits, ParserExecutionPort } from '@cleocode/contracts';
 import type { GraphSourceRootAssessment } from '@cleocode/contracts/graph';
 import type { NexusDbInsert, NexusTables } from './knowledge-graph.js';
 /**
@@ -85,14 +87,40 @@ export interface PipelineOptions {
     /** Existing runtime process launcher; required for isolated production parsing. */
     parserExecution?: ParserExecutionPort;
     /**
-     * When `true`, skip publication when indexed source files are unchanged.
-     * Otherwise rebuild a complete staged generation so cross-file resolution
-     * includes unchanged callers. No live rows are deleted during analysis.
-     * A caller-supplied `publishGraph` provides atomic replacement and recovery.
+     * When `true`, reuse the previous generation where that is provably exact
+     * (T12315): unchanged indexes publish nothing, and changed indexes re-parse
+     * only files without a reusable {@link GraphParseCacheEntry}, then re-run
+     * every resolution phase over the complete merged extraction. Falls back to a
+     * full parse — and says why in {@link PipelineResult.summary} — when there is
+     * no previous index or parse cache, the extractor build changed, or more than
+     * {@link PipelineOptions.maxIncrementalChangeRatio} of the files changed.
+     * No live rows are deleted during analysis; `publishGraph` replaces atomically.
      *
      * @default false
      */
     incremental?: boolean;
+    /** Owner-supplied reason reported when `incremental` is false (e.g. `--full`). */
+    fullReason?: string;
+    /**
+     * Share of files that may change before an incremental run falls back to a
+     * full rebuild. Above it, reuse saves little and a clean rebuild also sheds
+     * cache entries for files that no longer exist.
+     *
+     * @default 0.3
+     */
+    maxIncrementalChangeRatio?: number;
+    /**
+     * Read the parse cache committed with the previous generation. Required for
+     * incremental reuse; without it an incremental request parses every file.
+     */
+    loadParseCache?: () => GraphParseCacheEntry[] | Promise<GraphParseCacheEntry[]>;
+    /**
+     * Extractor fingerprint recorded with the published generation (`null` when
+     * none was recorded). An unchanged tree is reported `unchanged` only when it
+     * equals the current build's fingerprint; otherwise the published graph was
+     * produced by different extractor code and is rebuilt.
+     */
+    publishedFingerprint?: string | null;
     /** Explicit relative paths of nested repositories authorized for inclusion. */
     includedRepositories?: readonly string[];
     /** Revision captured by the owning project before indexing. */
@@ -189,7 +217,19 @@ export interface PipelineResult {
     processCount: number;
     /** Number of cross-community processes detected by Phase 6. */
     crossCommunityProcessCount: number;
+    /** Mode chosen (incremental, full or unchanged), why, file counts and phase costs. */
+    summary: GraphIndexRunSummary;
 }
+/** Default share of changed files above which an incremental run rebuilds fully. */
+export declare const DEFAULT_MAX_INCREMENTAL_CHANGE_RATIO = 0.3;
+/**
+ * Share of a repository that may fail to parse before a generation is refused.
+ *
+ * Below it the unparsed files are recorded and reported and the rest is
+ * published; above it the generation would misrepresent the codebase, so the
+ * previous graph is retained instead (T12313).
+ */
+export declare const UNPARSED_FILE_REFUSAL_RATIO = 0.1;
 /**
  * Return freshness statistics for the code intelligence index of a project.
  *
@@ -201,8 +241,13 @@ export interface PipelineResult {
  * @param repoPath - Absolute path to the repository root (used for mtime checks)
  * @param db - Drizzle database instance
  * @param tables - Drizzle table references
+ * @param options - `staleScan: false` skips re-hashing every indexed file and
+ *   reports `staleFileCount: -1`; for callers with a cheaper freshness answer (T12348).
+ * @returns Counts, last indexed time and stale-file count.
  */
-export declare function getIndexStats(_projectId: string, repoPath: string, db: NexusDbReadInsert, tables: NexusTables): Promise<IndexStats>;
+export declare function getIndexStats(_projectId: string, repoPath: string, db: NexusDbReadInsert, tables: NexusTables, options?: {
+    staleScan?: boolean;
+}): Promise<IndexStats>;
 /**
  * Run the full code intelligence ingestion pipeline for a repository.
  *

package/dist/src/pipeline/index.d.ts.map

@@ -1 +1 @@
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