@cleocode/core 2026.9.7 → 2026.9.9

package/dist/memory/patterns.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"patterns.d.ts","sourceRoot":"","sources":["../../src/memory/patterns.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AASH,kCAAkC;AAClC,MAAM,MAAM,WAAW,GAAG,UAAU,GAAG,SAAS,GAAG,SAAS,GAAG,SAAS,GAAG,cAAc,CAAC;AAE1F,oBAAoB;AACpB,MAAM,MAAM,aAAa,GAAG,KAAK,GAAG,QAAQ,GAAG,MAAM,CAAC;AAEtD,4CAA4C;AAC5C,MAAM,WAAW,kBAAkB;IACjC,IAAI,EAAE,WAAW,CAAC;IAClB,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;IAChB,MAAM,CAAC,EAAE,aAAa,CAAC;IACvB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,QAAQ,CAAC,EAAE,MAAM,EAAE,CAAC;IACpB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB;;;;OAIG;IACH,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB;;;;;OAKG;IACH,SAAS,CAAC,EAAE,OAAO,CAAC;CACrB;AAED,yCAAyC;AACzC,MAAM,WAAW,mBAAmB;IAClC,IAAI,CAAC,EAAE,WAAW,CAAC;IACnB,MAAM,CAAC,EAAE,aAAa,CAAC;IACvB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AASD;;;;;;;;;;;;;;GAcG;AACH,wBAAsB,YAAY,CAAC,WAAW,EAAE,MAAM,EAAE,MAAM,EAAE,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA+MjF;AAED;;;GAGG;AACH,wBAAsB,cAAc,CAAC,WAAW,EAAE,MAAM,EAAE,MAAM,GAAE,mBAAwB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;KA0BzF;AAED;;;GAGG;AACH,wBAAsB,YAAY,CAAC,WAAW,EAAE,MAAM;;;;;iBAa5B,MAAM;mBAAa,MAAM;;GAgBlD"}

package/dist/memory/patterns.js

@@ -10,10 +10,11 @@
  * @epic T4763
  */
 import { createHash, randomBytes } from 'node:crypto';
+import { captureProjectScope, worktreeScope } from '../project-scope.js';
+import { trackBackgroundOp } from '../store/background-ops.js';
 import { getBrainAccessor } from '../store/memory-accessor.js';
 import { upsertGraphNode } from './graph-auto-populate.js';
 import { computePatternQuality } from './quality-scoring.js';
-import { detectSupersession, supersedeMemory } from './temporal-supersession.js';
 /**
  * Generate a pattern ID.
  */
@@ -23,9 +24,20 @@ function generatePatternId() {
 /**
  * Store a new pattern.
  * If a similar pattern already exists (same type + matching text), increments frequency.
+ * @param projectRoot - Explicit owning project root captured before asynchronous work.
+ * @param params - Existing pattern fields and extraction-gate policy.
+ * @returns The stored or merged pattern; graph projection remains an optional tracked effect.
+ * @remarks Both graph branches retain the original execution context and completion
+ * barrier. Cancellation after a pattern commit can prevent graph projection without
+ * undoing the committed pattern. Scoped primary writes share the same original fence.
+ * @example
+ * ```ts
+ * await storePattern(root, { type: 'workflow', pattern: 'Run tests', context: 'Before release' });
+ * ```
  * @task T4768, T5241
  */
 export async function storePattern(projectRoot, params) {
+    const scope = captureProjectScope(projectRoot, worktreeScope.getStore());
     if (!params.pattern?.trim()) {
         throw new Error('Pattern description is required');
     }
@@ -40,7 +52,7 @@ export async function storePattern(projectRoot, params) {
         const { verifyCandidate } = await import('./extraction-gate.js');
         const isAuto = params.source?.startsWith('auto') ?? false;
         const sourceConf = isAuto ? 'speculative' : 'agent';
-        const gateResult = await verifyCandidate(projectRoot, {
+        const gateResult = await verifyCandidate(scope.worktreeRoot, {
             text: params.pattern.trim(),
             title: params.context.trim().slice(0, 120),
             memoryType: 'procedural',
@@ -52,7 +64,9 @@ export async function storePattern(projectRoot, params) {
         if (gateResult.action !== 'stored') {
             // Gate merged, rejected, or queued — return best available representation
             const existing = gateResult.id
-                ? await (await getBrainAccessor(projectRoot)).getPattern(gateResult.id).catch(() => null)
+                ? await (await getBrainAccessor(scope.worktreeRoot))
+                    .getPattern(gateResult.id)
+                    .catch(() => null)
                 : null;
             if (existing) {
                 return { ...existing, examples: JSON.parse(existing.examplesJson || '[]') };
@@ -87,7 +101,7 @@ export async function storePattern(projectRoot, params) {
         }
         // Gate approved — fall through to native storage below (no recursion needed).
     }
-    const accessor = await getBrainAccessor(projectRoot);
+    const accessor = await getBrainAccessor(scope.worktreeRoot);
     // Search for duplicate pattern by normalized text within same type
     const existingPatterns = await accessor.findPatterns({ type: params.type });
     const normalizedInput = params.pattern.trim().toLowerCase();
@@ -102,16 +116,14 @@ export async function storePattern(projectRoot, params) {
             frequency: duplicate.frequency + 1,
             extractedAt: now,
             examplesJson: JSON.stringify(mergedExamples),
-        });
+        }, scope.execution);
         const updated = await accessor.getPattern(duplicate.id);
         // Refresh graph node for the updated (incremented) pattern (best-effort, T537).
-        upsertGraphNode(projectRoot, `pattern:${duplicate.id}`, 'pattern', duplicate.pattern.substring(0, 200), duplicate.qualityScore ?? 0.5, duplicate.pattern + duplicate.context, {
+        trackBackgroundOp(() => worktreeScope.run(scope, () => upsertGraphNode(scope.worktreeRoot, `pattern:${duplicate.id}`, 'pattern', duplicate.pattern.substring(0, 200), duplicate.qualityScore ?? 0.5, duplicate.pattern + duplicate.context, {
             type: duplicate.type,
             impact: duplicate.impact ?? undefined,
             frequency: duplicate.frequency + 1,
-        }).catch(() => {
-            /* best-effort */
-        });
+        }, scope.execution)), scope.execution);
         return {
             ...updated,
             examples: mergedExamples,
@@ -169,31 +181,11 @@ export async function storePattern(projectRoot, params) {
         // T737: content hash for dedup gating
         contentHash: contentHashValue,
     };
-    const saved = await accessor.addPattern(entry);
+    const saved = await accessor.addPattern(entry, scope.execution);
     // Auto-populate graph node for the new pattern (best-effort, T537).
-    upsertGraphNode(projectRoot, `pattern:${saved.id}`, 'pattern', saved.pattern.substring(0, 200), qualityScore, saved.pattern + saved.context, { type: saved.type, impact: saved.impact ?? undefined }).catch(() => {
-        /* best-effort */
-    });
-    // T738: Auto-fire detectSupersession only for high-trust writes.
-    // Agent/speculative confidence patterns rely on sleep-consolidation dedup instead.
-    // Only 'owner' or 'task-outcome' sourceConfidence triggers write-time supersession.
-    if (sourceConfidence === 'owner' || sourceConfidence === 'task-outcome') {
-        detectSupersession(projectRoot, {
-            id: saved.id,
-            text: saved.pattern + ' ' + saved.context,
-            createdAt: saved.extractedAt ?? new Date().toISOString().replace('T', ' ').slice(0, 19),
-        })
-            .then((candidates) => {
-            for (const candidate of candidates) {
-                supersedeMemory(projectRoot, candidate.existingId, saved.id, 'auto:pattern-supersedes — high overlap detected at store time').catch(() => {
-                    /* best-effort */
-                });
-            }
-        })
-            .catch(() => {
-            /* best-effort */
-        });
-    }
+    trackBackgroundOp(() => worktreeScope.run(scope, () => upsertGraphNode(scope.worktreeRoot, `pattern:${saved.id}`, 'pattern', saved.pattern.substring(0, 200), qualityScore, saved.pattern + saved.context, { type: saved.type, impact: saved.impact ?? undefined }, scope.execution)), scope.execution);
+    // Similarity identifies reconciliation candidates; it cannot establish authority.
+    // Replacement requires an explicit sourced operation from the calling agent.
     return {
         ...saved,
         examples: JSON.parse(saved.examplesJson || '[]'),

package/dist/memory/patterns.js.map

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package/dist/memory/pipeline-manifest-sqlite.d.ts

@@ -2,7 +2,7 @@
  * Pipeline Manifest SQLite Implementation
  *
  * Reimplements all 14 pipeline manifest operations using Drizzle ORM +
- * SQLite (tasks.db pipeline_manifest table) instead of JSONL file I/O.
+ * Canonical docs_pipeline_manifest writes and provenance-aware legacy history reads.
  *
  * Provides a one-time migration function to import existing MANIFEST.jsonl
  * entries into the new table.
@@ -10,8 +10,12 @@
  * @task T5581
  * @epic T5576
  */
-import type { EngineResult } from '../engine-result.js';
-import { type ContradictionDetail, type ExtendedManifestEntry, filterManifestEntries, type ResearchFilter, type SupersededDetail } from './index.js';
+import type { ManifestWithProvenance } from '@cleocode/contracts/operations/research';
+import { type EngineResult } from '../engine-result.js';
+import { docsPipelineManifest as pipelineManifest } from '../store/schema/cleo-project/docs.js';
+declare function getBinding(cwd?: string): Promise<import("../db/index.js").DomainBinding<import("drizzle-orm/node-sqlite/driver").NodeSQLiteDatabase<import("drizzle-orm").EmptyRelations>, import("../store/dual-scope-db.js").ProjectStore>>;
+import type { ContradictionDetail, ExtendedManifestEntry, ResearchFilter, SupersededDetail } from './index.js';
+import { filterManifestEntries } from './manifest-filter.js';
 export type ManifestEntry = ExtendedManifestEntry;
 export type { ContradictionDetail, ResearchFilter, SupersededDetail };
 export { filterManifestEntries };
@@ -19,7 +23,40 @@ interface PipelineManifestListParams extends ResearchFilter {
     type?: string;
     offset?: number;
 }
-/** pipeline.manifest.show - Get manifest entry details by ID */
+/**
+ * Insert authentic prepared manifest rows in one guarded project transaction.
+ *
+ * @remarks
+ * Preserves caller handle ownership and both storage histories. Identical complete
+ * payloads are idempotent; differing identities and legacy rows never authorize
+ * replacement. Any batch failure rolls back all inserted rows.
+ * @param rows - Complete persisted payloads, including raw content and metadata.
+ * @param projectRoot - Explicit project identity captured before asynchronous binding.
+ * @param expectedDb - Caller-owned canonical task-domain handle for this project.
+ * @returns Number of newly inserted rows; identical stored rows are skipped.
+ * @throws If database identity, historical evidence, or any transactional write fails.
+ * @example
+ * ```ts
+ * const inserted = await insertManifestRows(preparedRows, projectRoot, db);
+ * ```
+ */
+export declare function insertManifestRows(rows: ReadonlyArray<typeof pipelineManifest.$inferSelect>, projectRoot: string, expectedDb: Awaited<ReturnType<typeof getBinding>>['db']): Promise<number>;
+/**
+ * Retrieve a manifest and resolve its local file or canonical document reference.
+ *
+ * @remarks
+ * Supports `cleo://docs/<reference>` where the single percent-encoded segment is
+ * a document slug, attachment ID, or SHA-256 accepted by the canonical docs read
+ * model. URI syntax establishes no authority. Unsupported URIs and failed reads
+ * are explicit failures; missing ordinary files retain `fileExists: false`.
+ * @param researchId - Exact manifest identity, including historical entries.
+ * @param projectRoot - Explicit project directory used for both manifest and docs.
+ * @returns Manifest provenance and content, or a structured resolution failure.
+ * @example
+ * ```ts
+ * const result = await pipelineManifestShow('T001-report', '/project');
+ * ```
+ */
 export declare function pipelineManifestShow(researchId: string, projectRoot?: string): Promise<EngineResult>;
 /** pipeline.manifest.list - List manifest entries with filters */
 export declare function pipelineManifestList(params: PipelineManifestListParams, projectRoot?: string): Promise<EngineResult>;
@@ -34,13 +71,29 @@ export declare function pipelineManifestPending(epicId?: string, projectRoot?: s
 export declare function pipelineManifestStats(epicId?: string, projectRoot?: string): Promise<EngineResult>;
 /** pipeline.manifest.read - Read manifest entries with optional filter */
 export declare function pipelineManifestRead(filter?: ResearchFilter, projectRoot?: string): Promise<EngineResult>;
-/** pipeline.manifest.append - Append entry to pipeline_manifest table */
+/** Append to canonical manifest storage after checking both histories for unresolved identities. */
 export declare function pipelineManifestAppend(entry: ExtendedManifestEntry, projectRoot?: string): Promise<EngineResult>;
 /** pipeline.manifest.archive - Archive old manifest entries by date */
 export declare function pipelineManifestArchive(beforeDate: string, projectRoot?: string): Promise<EngineResult>;
 /** pipeline.manifest.compact - Dedup by contentHash (keep newest by createdAt) */
 export declare function pipelineManifestCompact(projectRoot?: string): Promise<EngineResult>;
-/** pipeline.manifest.validate - Validate manifest entries for a task */
+/**
+ * Validate available manifest evidence explicitly linked to one task.
+ *
+ * @remarks
+ * This exported SDK helper is not a registered CLI operation. Selection uses
+ * exact linked-task membership; manifest ID wording establishes no ownership.
+ * Absent evidence, missing output, and blank output invalidate the assessment.
+ * Canonical document/read failures retain their structured diagnostics. Content
+ * availability does not establish implementation, testing, review, or authority.
+ * @param taskId - Exact task identity whose linked evidence is assessed.
+ * @param projectRoot - Project captured before any asynchronous store access.
+ * @returns Field and content assessment, or a structured diagnostic failure.
+ * @example
+ * ```ts
+ * const result = await pipelineManifestValidate('T001', '/project');
+ * ```
+ */
 export declare function pipelineManifestValidate(taskId: string, projectRoot?: string): Promise<EngineResult>;
 /** pipeline.manifest.contradictions - Find entries with overlapping topics but conflicting key_findings */
 export declare function pipelineManifestContradictions(projectRoot?: string, params?: {
@@ -57,10 +110,20 @@ export declare function pipelineManifestSuperseded(projectRoot?: string, params?
 /** pipeline.manifest.link - Link manifest entry to a task */
 export declare function pipelineManifestLink(taskId: string, researchId: string, notes?: string, projectRoot?: string): Promise<EngineResult>;
 /**
- * Read all manifest entries from the pipeline_manifest table.
- * Replaces readManifestEntries() from pipeline-manifest-compat.
+ * Read unarchived entries from both manifest histories with physical provenance.
+ * @param projectRoot - Explicit project root; takes priority over ambient project pins.
+ * @returns Entries retaining the existing fields and observed source tables/database path.
+ * @throws EngineResultError when the same identity has conflicting persisted payloads.
+ * @throws Error when storage reads fail; failure is never represented as an empty history.
+ * @remarks Identical rows are deduplicated only after comparing every stored scalar.
+ * Legacy-only evidence remains readable and is never implicitly migrated or rewritten.
+ * @example
+ * ```ts
+ * const entries = await readManifestEntries('/project');
+ * const sources = entries.map((entry) => entry.provenance.tables);
+ * ```
  */
-export declare function readManifestEntries(projectRoot?: string): Promise<ExtendedManifestEntry[]>;
+export declare function readManifestEntries(projectRoot?: string): Promise<Array<ManifestWithProvenance<ExtendedManifestEntry>>>;
 /**
  * Filter manifest entries by criteria (alias for backward compatibility).
  */

package/dist/memory/pipeline-manifest-sqlite.d.ts.map

@@ -1 +1 @@
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