@cleocode/core 2026.9.24 → 2026.9.26

package/dist/sessions/terminal-identity.js

@@ -22,16 +22,27 @@
  * in `session-id.ts`, whose values ARE CLEO ids). They are opaque identities
  * that only mean something through a persisted binding.
  *
- * ## ppid-chain fallback
+ * ## Harness-ancestor fallback (T12864)
  *
  * When no environment key is present, the identity falls back to the nearest
- * ancestor process that is not a launcher (node, pnpm, npx, mise, …) — in
- * practice the interactive shell of the terminal tab. The key carries the
- * process start time, so a recycled pid never matches a stale binding. The walk
- * is bounded ({@link PPID_CHAIN_MAX_DEPTH}) and never climbs past the first
- * non-launcher ancestor, because anything above the shell (the terminal
- * emulator, tmux server, launchd) is shared by every tab and would re-create the
- * cross-terminal bleed this module exists to remove.
+ * ancestor that identifies ONE caller ({@link resolveAncestor}): a long-lived
+ * interactive or script shell (the terminal tab's shell, a CI step or cron
+ * script), or — past throwaway `sh -c` / `bash -c` layers — a KNOWN agent
+ * harness process ({@link KNOWN_HARNESSES}: Kimi, aider, …). Such harnesses run every tool call in a fresh `bash -c`, so the
+ * immediate parent changes on each call; the harness process does not. Any
+ * other process (a node / python host that may run several agents, a daemon
+ * spawning `cleo` directly) identifies nobody unless `CLEO_AGENT_ID` names the
+ * agent. Pid 1 / launchd / systemd / init, an unreadable shell command line or
+ * depth exhaustion also yield no key: the caller keeps the single-session guard.
+ *
+ * Env tab keys are inherited by every descendant, so when a harness (or a
+ * `CLEO_AGENT_ID` agent) runs below one, its anchor is appended as a more
+ * specific key — two harnesses in one ssh login or CI step stay apart.
+ *
+ * Before T12864 the fallback stopped at the first non-launcher ancestor, which
+ * for a harness is the per-call `bash -c` — a new key on every call, so a
+ * session started in one call was invisible to the next (T12530 therefore
+ * stopped treating it as identity).
  *
  * @module
  * @task T12499
@@ -78,6 +89,31 @@ export const TERMINAL_KEY_SOURCES = [
         origin: 'konsole',
         qualifierEnvVar: 'KONSOLE_DBUS_SERVICE',
     },
+    // T12864 — non-terminal callers whose platform exports a per-job / per-login id.
+    // GitHub Actions: GITHUB_RUN_ID is per run and shared by its jobs, so it is
+    // qualified by GITHUB_RUN_ATTEMPT and GITHUB_JOB ("Variables reference",
+    // docs.github.com/en/actions/reference/workflows-and-actions/variables).
+    // Every step of one job shares the key; the steps run sequentially.
+    {
+        envVar: 'GITHUB_RUN_ID',
+        kind: 'terminal',
+        origin: 'github-actions',
+        qualifierEnvVar: 'GITHUB_RUN_ATTEMPT',
+        extraQualifierEnvVars: ['GITHUB_JOB'],
+    },
+    // GitLab CI: CI_JOB_ID is unique per job across the instance ("Predefined
+    // CI/CD variables reference", docs.gitlab.com/ci/variables/predefined_variables).
+    { envVar: 'CI_JOB_ID', kind: 'terminal', origin: 'gitlab-ci' },
+    // OpenSSH login with a tty: SSH_TTY names the login's tty and is set only
+    // when one was allocated; SSH_CONNECTION ("client-ip client-port server-ip
+    // server-port", ssh(1) ENVIRONMENT) disambiguates it across connections. A
+    // one-shot `ssh host 'cmd'` has no tty and falls through to the ancestor walk.
+    {
+        envVar: 'SSH_TTY',
+        kind: 'terminal',
+        origin: 'openssh',
+        qualifierEnvVar: 'SSH_CONNECTION',
+    },
 ];
 /**
  * Launcher processes skipped by the ppid-chain walk: they sit between the shell
@@ -106,8 +142,79 @@ export const PPID_CHAIN_LAUNCHERS = new Set([
  * lock (T12506) renders start times identically.
  */
 export { PS_STABLE_ENV };
-/** Maximum number of ancestors the ppid-chain walk inspects. */
-export const PPID_CHAIN_MAX_DEPTH = 4;
+/** Maximum number of ancestors the harness-ancestor walk inspects (T12864). */
+export const PPID_CHAIN_MAX_DEPTH = 12;
+/**
+ * Agent harnesses recognised by the ancestor walk (T12864), by PROGRAM name:
+ * the executable, or the script / `-m` module a `node` / `python` runtime runs
+ * (see {@link programName}). A listed process becomes a caller identity, even
+ * though it runs every tool call in a fresh `bash -c`.
+ *
+ * List ONLY processes that host exactly ONE agent session for their whole
+ * life. A process that hosts several (an IDE extension host, CrewAI,
+ * LangGraph, OpenHands, a server that clients attach to) must NOT be listed:
+ * its agents would share one session. Such hosts set `CLEO_AGENT_ID` per agent.
+ * Avoid names that other common tools also use.
+ *
+ * To add a harness: append the program name its process shows (check with
+ * `ps -o args= -p <pid>` while it runs a tool call), after confirming it is
+ * single-agent.
+ *
+ * Deliberately NOT listed:
+ * - `opencode`: `opencode serve` / `opencode web` run one server process that
+ *   hosts many sessions and clients (`opencode attach`, `opencode run
+ *   --attach`, `GET /session/status` for all sessions; opencode.ai/docs/server),
+ *   and tools run in that server process.
+ * - `goose`: collides with pressly/goose, the database migration tool.
+ */
+export const KNOWN_HARNESSES = new Set([
+    'claude',
+    'codex',
+    'aider',
+    'gemini',
+    'kimi',
+    'cursor-agent',
+    'amp',
+]);
+/**
+ * Language runtimes whose program name is the script or module they run
+ * (T12864): `node /usr/local/bin/gemini` is `gemini`, `python -m aider` is
+ * `aider`. A runtime running an unknown program is a generic host.
+ */
+const RUNTIME_PATTERN = /^(node|nodejs|bun|deno|python[0-9.]*|pypy[0-9.]*|ruby|java|php|perl)$/;
+/**
+ * Thin wrappers between a caller and `cleo` (T12864). They live exactly as long
+ * as the command they wrap, so the walk skips them. Matched on program name, so
+ * `npm exec …` (npx's process title) and `node …/npm-cli.js` both match.
+ */
+export const ANCESTOR_WRAPPERS = new Set([
+    'env',
+    'timeout',
+    'gtimeout',
+    'nohup',
+    'nice',
+    'time',
+    'xargs',
+    'stdbuf',
+    'sudo',
+    'doas',
+    'npm',
+    'npm-cli',
+    'npx',
+    'npx-cli',
+    'pnpm',
+    'pnpx',
+    'yarn',
+    'bunx',
+    'corepack',
+    'mise',
+    'cleo',
+]);
+/**
+ * The system's init / service manager (T12864). An ancestor walk that reaches
+ * one of these (or pid 1) found no caller-owned process.
+ */
+export const INIT_PROCESSES = new Set(['launchd', 'systemd', 'init']);
 /** Non-empty trimmed value of `name` in `env`, or `null`. */
 function envValue(env, name) {
     if (!name)
@@ -157,25 +264,204 @@ export function readProcessEntry(pid) {
     }
 }
 /**
- * Resolve the ppid-chain fallback key: the nearest non-launcher ancestor.
+ * Read a process's command line via `ps -o args=` (POSIX only, T12864).
+ *
+ * Tells a throwaway `sh -c '…'` from a long-lived shell, and names the program
+ * a runtime runs. Returns `null` on Windows, for an unknown pid, or when `ps`
+ * fails.
+ *
+ * @param pid - Process id to inspect.
+ * @returns The command line, or `null`.
+ */
+export function readProcessArgs(pid) {
+    if (process.platform === 'win32' || !Number.isInteger(pid) || pid <= 1)
+        return null;
+    try {
+        const out = execFileSync('ps', ['-o', 'args=', '-p', String(pid)], {
+            encoding: 'utf8',
+            timeout: 1000,
+            stdio: ['ignore', 'pipe', 'ignore'],
+            env: { ...process.env, ...PS_STABLE_ENV },
+        }).trim();
+        return out === '' ? null : out;
+    }
+    catch {
+        return null;
+    }
+}
+/** Base name of a path-like token, without a leading login-shell `-`. */
+function baseName(token) {
+    return token.slice(token.lastIndexOf('/') + 1).replace(/^-/, '');
+}
+/**
+ * The program a process runs, from its command line (T12864): the executable's
+ * base name, or — for a language runtime ({@link RUNTIME_PATTERN}) — the
+ * `-m` module or script it runs (extension stripped). Matches on the FIRST
+ * word, so a process title such as `npm exec cleo` is `npm`.
+ *
+ * @param commandLine - `ps -o args=` output (or the bare command name).
+ * @returns The program name.
+ * @example
+ * ```ts
+ * programName('/usr/bin/python3.12 -m aider --yes'); // 'aider'
+ * programName('npm exec cleo start T1');             // 'npm'
+ * ```
+ */
+export function programName(commandLine) {
+    const tokens = commandLine.trim().split(/\s+/);
+    const head = baseName(tokens[0] ?? '');
+    if (!RUNTIME_PATTERN.test(head))
+        return head;
+    for (let i = 1; i < tokens.length; i++) {
+        const token = tokens[i] ?? '';
+        if (token === '-m')
+            return (tokens[i + 1] ?? head).split('.')[0] ?? head;
+        if (token.startsWith('-'))
+            continue;
+        return baseName(token).replace(/\.(c|m)?(js|ts)$|\.py$/, '');
+    }
+    return head;
+}
+/** Shell options whose NEXT token is their argument, not an operand. */
+const SHELL_OPTIONS_WITH_ARGUMENT = new Set([
+    '-o',
+    '+o',
+    '-O',
+    '+O',
+    '--rcfile',
+    '--init-file',
+]);
+/** PowerShell switches (case-insensitive) that run a command string. */
+const PWSH_COMMAND_SWITCHES = new Set([
+    '-c',
+    '-command',
+    '-commandwithargs',
+    '-cwa',
+    '-e',
+    '-ec',
+    '-encodedcommand',
+]);
+/**
+ * Whether a shell's command line runs a single command string (`sh -c '…'`,
+ * `bash -lc '…'`, `pwsh -Command …`) — a throwaway shell that exits with the
+ * command — rather than an interactive or script shell that outlives it (T12864).
+ *
+ * POSIX-style shells: options are read up to the first operand. `-c`,
+ * `--command` / `--commands` (fish, nu), or a short-option cluster containing
+ * `c` means command mode; the arguments of `-o` / `+o` / `-O` / `+O` /
+ * `--rcfile` / `--init-file` are skipped rather than read as the operand.
+ * PowerShell: any `-Command` / `-c` / `-EncodedCommand` / `-CommandWithArgs`.
+ *
+ * @param args - The shell's full command line.
+ * @returns `true` for a command-string shell.
+ */
+export function isCommandStringShell(args) {
+    const tokens = args.trim().split(/\s+/);
+    const shell = programName(args);
+    // A shell run by a runtime (`python3 /usr/bin/xonsh -c …`): its own options
+    // start after the script path.
+    let first = 1;
+    if (RUNTIME_PATTERN.test(baseName(tokens[0] ?? ''))) {
+        while (first < tokens.length && (tokens[first] ?? '').startsWith('-'))
+            first++;
+        first++;
+    }
+    const rest = tokens.slice(first);
+    if (shell === 'pwsh' || shell === 'powershell') {
+        return rest.some((t) => PWSH_COMMAND_SWITCHES.has(t.toLowerCase()));
+    }
+    for (let i = 0; i < rest.length; i++) {
+        const token = rest[i] ?? '';
+        if (token === '--')
+            return false;
+        if (token === '--command' || token === '--commands')
+            return true;
+        if (SHELL_OPTIONS_WITH_ARGUMENT.has(token)) {
+            i++;
+            continue;
+        }
+        if (token.startsWith('--'))
+            continue;
+        if (!/^[-+][A-Za-z]+$/.test(token))
+            return false;
+        if (token.startsWith('-') && token.slice(1).includes('c'))
+            return true;
+    }
+    return false;
+}
+/**
+ * Walk to the nearest ancestor that identifies ONE caller across its `cleo`
+ * calls (T12864).
+ *
+ * From `cleo`'s parent upwards, by program name ({@link programName}):
+ *
+ * - wrappers ({@link ANCESTOR_WRAPPERS}) are skipped;
+ * - a shell that is not a command-string shell ({@link isCommandStringShell})
+ *   is long-lived — one per terminal tab, CI step or script: `shell`;
+ * - a command-string shell (`bash -c`) is skipped;
+ * - a {@link KNOWN_HARNESSES} process is `harness`;
+ * - any other process ends the walk: it may host SEVERAL agents (a node or
+ *   python orchestrator, an IDE extension host, a daemon spawning `cleo`
+ *   directly), so it identifies nobody — unless `agentId` (`CLEO_AGENT_ID`)
+ *   names the agent, which makes it a `host` anchor.
+ *
+ * Returns `null` — no identity, the single-session guard applies — at pid 1 or
+ * an init process, when a shell's command line cannot be read, when the
+ * process table cannot be read, or past {@link PPID_CHAIN_MAX_DEPTH}.
  *
  * @param ppid - Parent pid to start from.
  * @param lookupProcess - Process-table reader.
- * @returns The fallback key, or `null` when the chain cannot be read.
+ * @param lookupArgs - Command-line reader.
+ * @param agentId - `CLEO_AGENT_ID`, when set.
+ * @returns The anchor, or `null`.
+ * @task T12864
  */
-function resolvePpidKey(ppid, lookupProcess) {
+export function resolveAncestor(ppid, lookupProcess, lookupArgs, agentId = null) {
     let pid = ppid;
-    for (let depth = 0; depth < PPID_CHAIN_MAX_DEPTH && pid > 1; depth++) {
+    for (let depth = 0; depth < PPID_CHAIN_MAX_DEPTH; depth++) {
+        if (pid <= 1)
+            return null;
         const entry = lookupProcess(pid);
-        if (!entry)
+        if (!entry || entry.pid <= 1)
+            return null;
+        const args = lookupArgs(entry.pid);
+        const program = programName(args ?? entry.command);
+        if (INIT_PROCESSES.has(program) || INIT_PROCESSES.has(entry.command))
             return null;
-        if (!PPID_CHAIN_LAUNCHERS.has(entry.command)) {
-            return { key: `ppid:${entry.pid}@${entry.startedAt}`, source: 'ppid', kind: 'ppid' };
+        if (OWNER_PROCESS_SHELLS.has(program)) {
+            if (args === null)
+                return null;
+            if (!isCommandStringShell(args))
+                return { entry, program, type: 'shell' };
+        }
+        else if (!ANCESTOR_WRAPPERS.has(program)) {
+            if (KNOWN_HARNESSES.has(program))
+                return { entry, program, type: 'harness' };
+            return agentId ? { entry, program, type: 'host' } : null;
         }
         pid = entry.ppid;
     }
     return null;
 }
+/**
+ * Key for an ancestor anchor. A plain long-lived shell is the terminal's own
+ * identity (`process`, tab tier). A harness, a `CLEO_AGENT_ID`-named host, or a
+ * shell with `CLEO_AGENT_ID` identifies one agent (`harness`, pane tier: more
+ * specific than the tab), qualified by the env key it runs under, if any.
+ */
+function anchorKey(anchor, agentId, under) {
+    const proc = `${anchor.entry.pid}@${anchor.entry.startedAt}`;
+    if (anchor.type === 'shell' && !agentId) {
+        return { key: `proc:${proc}`, source: 'process', kind: 'process' };
+    }
+    const agent = agentId ? `#agent=${agentId}` : '';
+    const scope = under ? `|${under.key}` : '';
+    return {
+        key: `harness:${anchor.program}:${proc}${agent}${scope}`,
+        source: 'process',
+        kind: 'harness',
+    };
+}
 /** Interactive / script shells skipped by {@link resolveOwnerProcess}, beyond the launchers. */
 export const OWNER_PROCESS_SHELLS = new Set([
     'sh',
@@ -186,6 +472,10 @@ export const OWNER_PROCESS_SHELLS = new Set([
     'ksh',
     'tcsh',
     'csh',
+    'pwsh',
+    'powershell',
+    'nu',
+    'xonsh',
 ]);
 /** Maximum number of ancestors {@link resolveOwnerProcess} inspects. */
 export const OWNER_PROCESS_MAX_DEPTH = 8;
@@ -223,8 +513,10 @@ export function resolveOwnerProcess(ppid = process.ppid, lookupProcess = readPro
  * Resolve the calling terminal's identity keys, most specific first (T12499).
  *
  * Every {@link TERMINAL_KEY_SOURCES} row whose variable is set contributes one
- * key. Only when NO row matches does the ppid-chain fallback run, so the common
- * case (an agent harness or a mainstream terminal) never spawns `ps`.
+ * key. Unless a provider key is present, the ancestor walk
+ * ({@link resolveAncestor}) then runs: with no env key its anchor is the only
+ * key; under env keys an agent-level anchor (a harness, or `CLEO_AGENT_ID`) is
+ * appended as the most specific key. The walk is memoised per process.
  *
  * Synchronous and database-free; binding persistence and lookup live in
  * `store/session-binding-store.ts`.
@@ -245,29 +537,46 @@ export function resolveTerminalKeys(options = {}) {
         const value = envValue(env, source.envVar);
         if (value === null)
             continue;
-        const qualifier = envValue(env, source.qualifierEnvVar);
+        const qualifiers = [source.qualifierEnvVar, ...(source.extraQualifierEnvVars ?? [])]
+            .map((name) => envValue(env, name))
+            .filter((q) => q !== null);
         keys.push({
-            key: `env:${source.envVar}=${qualifier === null ? value : `${qualifier}|${value}`}`,
+            key: `env:${source.envVar}=${[...qualifiers, value].join('|')}`,
             source: source.envVar,
             kind: source.kind,
         });
     }
-    if (keys.length > 0)
+    // A provider key already names one agent session: nothing is more specific.
+    if (keys.some((k) => k.kind === 'provider'))
         return keys;
-    const live = options.ppid === undefined && options.lookupProcess === undefined;
-    let ppidKey;
+    const agentId = envValue(env, 'CLEO_AGENT_ID');
+    const live = options.ppid === undefined &&
+        options.lookupProcess === undefined &&
+        options.lookupArgs === undefined;
+    let anchor;
     if (live) {
         // The live process's ancestry cannot change, so `ps` runs at most once per
-        // process even though identity resolution runs on every dispatch.
-        if (livePpidKey === undefined)
-            livePpidKey = resolvePpidKey(process.ppid, readProcessEntry);
-        ppidKey = livePpidKey;
+        // ancestor per process (and agent id) even though resolution runs per dispatch.
+        const memoKey = agentId ?? '';
+        if (!liveAnchors.has(memoKey))
+            liveAnchors.set(memoKey, resolveAncestor(process.ppid, readProcessEntry, readProcessArgs, agentId));
+        anchor = liveAnchors.get(memoKey) ?? null;
     }
     else {
-        ppidKey = resolvePpidKey(options.ppid ?? process.ppid, options.lookupProcess ?? readProcessEntry);
+        anchor = resolveAncestor(options.ppid ?? process.ppid, options.lookupProcess ?? readProcessEntry, options.lookupArgs ?? readProcessArgs, agentId);
     }
-    return ppidKey ? [ppidKey] : [];
+    if (!anchor)
+        return keys;
+    if (keys.length === 0)
+        return [anchorKey(anchor, agentId, undefined)];
+    // Env tab / pane keys are inherited by every descendant, so two harnesses
+    // (or two CLEO_AGENT_ID agents) under one ssh login, CI step or tab would
+    // share them. An agent-level anchor below them is appended as the more
+    // specific key; a plain shell anchor IS the tab and adds nothing.
+    if (anchor.type === 'shell' && !agentId)
+        return keys;
+    return [...keys, anchorKey(anchor, agentId, keys[0])];
 }
-/** Memoised ppid-chain key of the live process (`undefined` = not yet read). */
-let livePpidKey;
+/** Memoised ancestor anchors of the live process, by `CLEO_AGENT_ID` ('' = unset). */
+const liveAnchors = new Map();
 //# sourceMappingURL=terminal-identity.js.map

package/dist/sessions/terminal-identity.js.map

@@ -1 +1 @@
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package/dist/skills/manifests/research.js

@@ -224,6 +224,8 @@ const MANIFEST_STATUS_SET = new Set(MANIFEST_STATUSES);
 const VALID_AGENT_TYPES = new Set([
     'research',
     'consensus',
+    // T12521: the spawn prompt appends architecture_decision entries with their own type.
+    'architecture_decision',
     'specification',
     'decomposition',
     'implementation',

package/dist/skills/manifests/research.js.map

@@ -1 +1 @@
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package/dist/skills/orchestrator/startup.js

@@ -278,7 +278,7 @@ export async function analyzeDependencies(epicId, cwd) {
     // (T946 / Round 2 audit §8). See also dependency-check.ts:getReadyTasks.
     // T12692: ready candidates in THE comparator's order (D11161), ranked with
     // the same project context as `cleo next`.
-    const { ctx: ranking } = await loadRankingContext(acc, allTasks);
+    const { ctx: ranking } = await loadRankingContext(acc, allTasks, { cwd });
     const readyToSpawn = orderByRanking(epicTasks.filter((t) => {
         if (t.status !== 'pending')
             return false;
@@ -398,7 +398,7 @@ export async function generateHitlSummary(epicId, stopReason = 'context-limit',
             .filter((t) => t.status === 'done')
             .map((t) => ({ id: t.id, title: t.title }));
         // T12692: THE comparator (D11161) orders what remains.
-        const { ctx: ranking } = await loadRankingContext(acc);
+        const { ctx: ranking } = await loadRankingContext(acc, undefined, { cwd });
         remainingTasks = rankTasks(tasks.filter((t) => t.status !== 'done'), ranking).map(({ task: t }) => ({ id: t.id, title: t.title, status: t.status, priority: t.priority }));
         readyToSpawn = await getReadyTasks(epicId, cwd);
     }

package/dist/skills/orchestrator/startup.js.map

@@ -1 +1 @@
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package/dist/skills/orchestrator/validator.d.ts.map

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