@cleocode/core 2026.9.22 → 2026.9.24

package/dist/index.d.ts

@@ -100,8 +100,8 @@ export { adrStatusSchema, agentInstanceStatusSchema, agentTypeSchema, brainConfi
 export type { AdoptedSkillRowData, DoctorAdoptCliAdapters, DoctorAdoptOptions, DoctorAdoptOrphanRecord, DoctorAdoptResult, } from './skills/doctor-adopt.js';
 export { runDoctorAdopt } from './skills/doctor-adopt.js';
 export { AgentsSkillsRealDirError, type DoctorBridgeOptions, type DoctorBridgeResult, runDoctorBridge, } from './skills/doctor-bridge.js';
-export type { BundledSkillPruneReceipt } from './skills/prune-bundled.js';
-export { restoreBundledSkillQuarantine, runBundledSkillPrune, } from './skills/prune-bundled.js';
+export type { BundledSkillPruneReceipt, UnkeepResult } from './skills/prune-bundled.js';
+export { restoreBundledSkillQuarantine, runBundledSkillPrune, unkeepBundledSkill, } from './skills/prune-bundled.js';
 export { createDataAccessor, getAccessor, getTaskAccessor, } from './store/data-accessor.js';
 export { type CleoDbSnapshotHandle, type CleoDbSnapshotOptions, openCleoDbSnapshot, } from './store/open-cleo-db.js';
 export type { AgentServiceGrantRow, NewAgentServiceGrantRow, NewServiceConfigRow, NewServiceConnectionRow, ServiceConfigRow, ServiceConnectionRow, ServiceConnectionStatus, } from './store/schema/cleo-global/services.js';
@@ -140,7 +140,7 @@ export { assertProjectInitialized, detectStrayCleoDb, getCanonicalTemplatesTilde
 export type { Platform, SystemInfo } from './platform.js';
 export { detectPlatform, getIsoTimestamp, getSystemInfo, MINIMUM_NODE_MAJOR, PLATFORM, sha256, } from './platform.js';
 export type { ProjectInfo } from './project-info.js';
-export { getProjectInfo, getProjectInfoSync, updateProjectName } from './project-info.js';
+export { getProjectDisplayName, getProjectInfo, getProjectInfoSync, updateProjectName, } from './project-info.js';
 export type { MoveProjectResult, RelocateProjectOptions, RenameProjectResult, ReregisterProjectResult, } from './project-lifecycle.js';
 export * as projectLifecycle from './project-lifecycle.js';
 export { moveProject, renameProject, reregisterProject, rerootProject, } from './project-lifecycle.js';

package/dist/index.d.ts.map

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package/dist/index.js

@@ -137,7 +137,7 @@ tokenUsageMethodSchema, tokenUsageTransportSchema, } from './store/validation-sc
 export { runDoctorAdopt } from './skills/doctor-adopt.js';
 // Doctor — bridge helper (T9744 — flat re-exports for cleo CLI dispatch)
 export { AgentsSkillsRealDirError, runDoctorBridge, } from './skills/doctor-bridge.js';
-export { restoreBundledSkillQuarantine, runBundledSkillPrune, } from './skills/prune-bundled.js';
+export { restoreBundledSkillQuarantine, runBundledSkillPrune, unkeepBundledSkill, } from './skills/prune-bundled.js';
 export { createDataAccessor, 
 // @deprecated — use getTaskAccessor (T9054). Retained for one minor version.
 getAccessor, getTaskAccessor, } from './store/data-accessor.js';
@@ -190,7 +190,7 @@ export { assertProjectInitialized, detectStrayCleoDb, getCanonicalTemplatesTilde
 // Platform
 export { detectPlatform, getIsoTimestamp, getSystemInfo, MINIMUM_NODE_MAJOR, PLATFORM, sha256, } from './platform.js';
 // Project info
-export { getProjectInfo, getProjectInfoSync, updateProjectName } from './project-info.js';
+export { getProjectDisplayName, getProjectInfo, getProjectInfoSync, updateProjectName, } from './project-info.js';
 export * as projectLifecycle from './project-lifecycle.js';
 // Project lifecycle (T10295)
 export { moveProject, renameProject, reregisterProject, rerootProject, } from './project-lifecycle.js';

package/dist/index.js.map

@@ -1 +1 @@
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package/dist/init/scaffold-workflows.d.ts.map

@@ -1 +1 @@
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package/dist/init/scaffold-workflows.js

@@ -45,6 +45,7 @@
 import { appendFile, mkdir, readdir, readFile, rename, stat, writeFile } from 'node:fs/promises';
 import { dirname, join, resolve } from 'node:path';
 import { fileURLToPath } from 'node:url';
+import { joinCommandLine } from '../tasks/command-line.js';
 import { resolveToolCommand } from '../tasks/tool-resolver.js';
 import { getTemplatesByKind, resolveSourcePathAbsolute } from '../templates/registry.js';
 // ---------------------------------------------------------------------------
@@ -123,10 +124,12 @@ async function loadReleaseConfigJson(projectRoot) {
  */
 function resolveToolLine(canonical, projectRoot, fallback) {
     const result = resolveToolCommand(canonical, projectRoot);
+    // T12718: a workflow `run:` step IS a shell. A declared command the evidence
+    // runner refuses for its shell syntax is rendered verbatim here, and resolved
+    // argv is re-quoted rather than joined bare, so quoted words survive.
     if (!result.ok)
-        return fallback;
-    const { cmd, args } = result.command;
-    return args.length > 0 ? `${cmd} ${args.join(' ')}` : cmd;
+        return result.rawCommand ?? fallback;
+    return joinCommandLine([result.command.cmd, ...result.command.args]);
 }
 /**
  * Build the resolved placeholder set used by the substitution pass.

package/dist/init/scaffold-workflows.js.map

@@ -1 +1 @@
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+{"version":3,"file":"upgrade-workflows.d.ts","sourceRoot":"","sources":["../../src/init/upgrade-workflows.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAiDG;AAOH,OAAO,KAAK,EACV,wBAAwB,EACxB,qBAAqB,EACrB,YAAY,EACb,MAAM,yBAAyB,CAAC;AAOjC;;;;;;;;;;;;;;;;;;;GAmBG;AACH,MAAM,MAAM,qBAAqB,GAC7B,WAAW,GACX,SAAS,GACT,eAAe,GACf,gBAAgB,GAChB,SAAS,GACT,SAAS,CAAC;AAEd;;;;;;GAMG;AACH,MAAM,WAAW,sBAAsB;IACrC,sCAAsC;IACtC,QAAQ,EAAE,YAAY,CAAC;IACvB,kDAAkD;IAClD,UAAU,EAAE,MAAM,CAAC;IACnB,gFAAgF;IAChF,QAAQ,EAAE,MAAM,CAAC;IACjB,4EAA4E;IAC5E,QAAQ,EAAE,MAAM,GAAG,IAAI,CAAC;IACxB,qEAAqE;IACrE,MAAM,EAAE,qBAAqB,CAAC;IAC9B;;;;;OAKG;IACH,gBAAgB,EAAE,OAAO,CAAC;CAC3B;AAED;;GAEG;AACH,MAAM,WAAW,uBAAuB;IACtC;;OAEG;IACH,WAAW,EAAE,MAAM,CAAC;IACpB;;;;;OAKG;IACH,YAAY,EAAE,MAAM,CAAC;IACrB;;;OAGG;IACH,SAAS,CAAC,EAAE,aAAa,CAAC,YAAY,CAAC,CAAC;IACxC;;;;OAIG;IACH,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB;;;;OAIG;IACH,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB;;;OAGG;IACH,qBAAqB,CAAC,EAAE,qBAAqB,CAAC;IAC9C;;;;;OAKG;IACH,iBAAiB,CAAC,EAAE,iBAAiB,CAAC;CACvC;AAED;;;;;GAKG;AACH,MAAM,MAAM,iBAAiB,GAAG,OAAO,CAAC,MAAM,CAAC,YAAY,EAAE,OAAO,CAAC,CAAC,CAAC;AAEvE;;GAEG;AACH,MAAM,WAAW,sBAAsB;IACrC,8DAA8D;IAC9D,QAAQ,EAAE,sBAAsB,EAAE,CAAC;IACnC,yDAAyD;IACzD,aAAa,EAAE,wBAAwB,CAAC;IACxC;;;;;OAKG;IACH,QAAQ,EAAE,OAAO,CAAC;CACnB;AAyED;;;;;;;;;;;GAWG;AACH,wBAAgB,sBAAsB,CAAC,IAAI,EAAE,MAAM,GAAG,iBAAiB,CAoBtE;AAgKD;;;;;;;;;;;;;;;;;;GAkBG;AACH,wBAAsB,gBAAgB,CACpC,IAAI,EAAE,uBAAuB,GAC5B,OAAO,CAAC,sBAAsB,CAAC,CAyHjC"}

package/dist/init/upgrade-workflows.js

@@ -50,6 +50,7 @@
  */
 import { appendFile, mkdir, readFile, rename, stat, writeFile } from 'node:fs/promises';
 import { dirname, join } from 'node:path';
+import { joinCommandLine } from '../tasks/command-line.js';
 import { resolveToolCommand } from '../tasks/tool-resolver.js';
 import { DEFAULT_WORKFLOW_TEMPLATES } from './scaffold-workflows.js';
 // ---------------------------------------------------------------------------
@@ -160,10 +161,12 @@ export function parseOverridesYamlBody(body) {
  */
 function resolveToolLine(canonical, projectRoot, fallback) {
     const result = resolveToolCommand(canonical, projectRoot);
+    // T12718: a workflow `run:` step IS a shell. A declared command the evidence
+    // runner refuses for its shell syntax is rendered verbatim here, and resolved
+    // argv is re-quoted rather than joined bare, so quoted words survive.
     if (!result.ok)
-        return fallback;
-    const { cmd, args } = result.command;
-    return args.length > 0 ? `${cmd} ${args.join(' ')}` : cmd;
+        return result.rawCommand ?? fallback;
+    return joinCommandLine([result.command.cmd, ...result.command.args]);
 }
 /**
  * Build the resolved placeholder set used by the substitution pass.

package/dist/init/upgrade-workflows.js.map

@@ -1 +1 @@
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package/dist/init.d.ts.map

@@ -1 +1 @@
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package/dist/init.js

@@ -993,13 +993,17 @@ export async function updateDocs() {
 /**
  * Remove the identity files a relocated project left (or `git checkout`
  * restored) at `root`, so `cleo init --here --new-identity` mints a new id
- * instead of adopting the old one: `.cleo/project-id` and
- * `.cleo/project-info.json` only when they declare `projectId`, and the reroot
- * tombstone. Nothing else is touched.
+ * instead of adopting the old one: `.cleo/project.json`, `.cleo/project-id`
+ * and `.cleo/project-info.json` only when they declare `projectId`, and the
+ * reroot tombstone. Nothing else is touched.
  */
 async function retireRelocatedIdentity(root, projectId) {
-    const { readPortableProjectId } = await import('@cleocode/paths');
-    const tracked = readPortableProjectId(root);
+    const { readProjectIdFile, readProjectManifest } = await import('@cleocode/paths');
+    const manifest = readProjectManifest(root);
+    if (manifest.status === 'valid' && manifest.manifest.id === projectId) {
+        await unlink(join(root, '.cleo', 'project.json'));
+    }
+    const tracked = readProjectIdFile(root);
     if (tracked.status === 'valid' && tracked.projectId === projectId) {
         await unlink(join(root, '.cleo', 'project-id'));
     }
@@ -1082,7 +1086,7 @@ export async function initProject(opts = {}) {
     // separate project (a new id) may start here.
     if (relocated && !opts.newIdentity) {
         throw new CleoError(ExitCode.PROJECT_MOVED, `E_PROJECT_MOVED: ${projRoot} is where project ${relocated.projectId} was rerooted from; \`--here\` alone would create a second store for that same project`, {
-            fix: `cd "${relocated.movedTo}" (the live project). To start a DIFFERENT project here, run \`cleo init --here --new-identity\` (mints a new id; commit the new .cleo/project-id).`,
+            fix: `cd "${relocated.movedTo}" (the live project). To start a DIFFERENT project here, run \`cleo init --here --new-identity\` (mints a new id; commit the new .cleo/project.json and .cleo/project-id).`,
             details: {
                 field: 'projectRoot',
                 projectId: relocated.projectId,
@@ -1328,8 +1332,11 @@ async function scaffoldInitTarget(opts, target) {
         warnings.push(`Git hook installation: ${err instanceof Error ? err.message : String(err)}`);
     }
     // T4684: Project info (.cleo/project-info.json)
-    // T12325: the id is adopted into the tracked write-once .cleo/project-id;
-    // re-links, conflicts and missing registry coverage are reported, not hidden.
+    // T12325 · T12716: a project with no tracked identity records its id in the
+    // tracked write-once .cleo/project.json (+ the legacy .cleo/project-id
+    // mirror); re-links, conflicts, a legacy-only project (migrated only by
+    // `cleo doctor project-identity --resolve`) and missing registry coverage
+    // are reported, not hidden.
     const projectInfoResult = await ensureProjectInfo(projRoot, {
         force,
         mintNewIdentity: opts.newIdentity,
@@ -1341,11 +1348,13 @@ async function scaffoldInitTarget(opts, target) {
         created.push('project-info.json');
     }
     if (projectInfoResult.details &&
-        /re-linked|conflict|invalid|coverage missing/.test(projectInfoResult.details)) {
-        warnings.push(`Project identity: ${projectInfoResult.details}`);
+        /re-linked|conflict|invalid|coverage missing|tracked identity legacy/.test(projectInfoResult.details)) {
+        warnings.push(`Project identity: ${projectInfoResult.details}${projectInfoResult.details.includes('tracked identity legacy')
+            ? '. Migrate to .cleo/project.json: `cleo doctor project-identity --resolve --dry-run`, then `--resolve`'
+            : ''}`);
     }
     if (retiredProjectId) {
-        warnings.push(`.cleo/project-id changed: this is a NEW project, not ${retiredProjectId} (which lives on elsewhere). Commit the new .cleo/project-id.`);
+        warnings.push(`The tracked identity changed: this is a NEW project, not ${retiredProjectId} (which lives on elsewhere). Commit the new .cleo/project.json and .cleo/project-id.`);
         // Both projects are registered under this directory's name; say so rather
         // than rename either one behind the operator's back.
         warnings.push(`Project name "${basename(projRoot)}" is now ambiguous: ${retiredProjectId} was registered under the same name. Rename this one with \`cleo project rename <new-name>\`.`);