@cleocode/core 2026.9.16 → 2026.9.18

package/dist/doctor/index.d.ts

@@ -30,7 +30,7 @@ export type { PragmaSsot, PragmaSsotEntry } from './pragma-ssot.js';
 export { loadPragmaSsot, normalisePragmaValue, PRAGMA_VALUE_NORMALISERS, } from './pragma-ssot.js';
 export { auditSagaHierarchy } from './saga-audit.js';
 export type { SupersededStoreEntry, SupersededStoreScanResult } from './superseded-store.js';
-export { LIVE_STORE_FILENAME, scanSupersededStores } from './superseded-store.js';
+export { LIVE_STORE_FILENAME, SUPERSEDED_STORE_RECONCILE_COMMAND, scanSupersededStores, } from './superseded-store.js';
 export type { PruneOptions, ScanOptions } from './worktree-orphans.js';
 export { auditWorktreeOrphansComprehensive, pruneWorktreeOrphans, scanWorktreeOrphans, } from './worktree-orphans.js';
 //# sourceMappingURL=index.d.ts.map

package/dist/doctor/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/doctor/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;GAkBG;AAKH,OAAO,EACL,gBAAgB,EAChB,gBAAgB,EAChB,gBAAgB,EAChB,gBAAgB,EAChB,gBAAgB,EAChB,yBAAyB,EACzB,2BAA2B,EAC3B,8BAA8B,EAC9B,aAAa,EACb,wBAAwB,EACxB,yBAAyB,EACzB,iBAAiB,EACjB,sBAAsB,EACtB,wBAAwB,EACxB,qBAAqB,EACrB,eAAe,GAChB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,sBAAsB,EAAE,MAAM,sBAAsB,CAAC;AAG9D,OAAO,EAAE,yBAAyB,EAAE,MAAM,6BAA6B,CAAC;AAExE,YAAY,EAAE,wBAAwB,EAAE,uBAAuB,EAAE,MAAM,qBAAqB,CAAC;AAC7F,OAAO,EACL,oBAAoB,EACpB,2BAA2B,EAC3B,2BAA2B,EAC3B,sBAAsB,EACtB,uBAAuB,EACvB,kBAAkB,EAClB,kBAAkB,EAClB,iBAAiB,GAClB,MAAM,qBAAqB,CAAC;AAC7B,YAAY,EAAE,kBAAkB,EAAE,eAAe,EAAE,MAAM,oBAAoB,CAAC;AAC9E,OAAO,EAAE,mBAAmB,EAAE,eAAe,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAC;AAC5F,YAAY,EAAE,qBAAqB,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAC;AACvF,OAAO,EAAE,oBAAoB,EAAE,MAAM,yBAAyB,CAAC;AAC/D,YAAY,EAAE,UAAU,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC;AACpE,OAAO,EACL,cAAc,EACd,oBAAoB,EACpB,wBAAwB,GACzB,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EAAE,kBAAkB,EAAE,MAAM,iBAAiB,CAAC;AAErD,YAAY,EAAE,oBAAoB,EAAE,yBAAyB,EAAE,MAAM,uBAAuB,CAAC;AAC7F,OAAO,EAAE,mBAAmB,EAAE,oBAAoB,EAAE,MAAM,uBAAuB,CAAC;AAClF,YAAY,EAAE,YAAY,EAAE,WAAW,EAAE,MAAM,uBAAuB,CAAC;AACvE,OAAO,EACL,iCAAiC,EACjC,oBAAoB,EACpB,mBAAmB,GACpB,MAAM,uBAAuB,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/doctor/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;GAkBG;AAKH,OAAO,EACL,gBAAgB,EAChB,gBAAgB,EAChB,gBAAgB,EAChB,gBAAgB,EAChB,gBAAgB,EAChB,yBAAyB,EACzB,2BAA2B,EAC3B,8BAA8B,EAC9B,aAAa,EACb,wBAAwB,EACxB,yBAAyB,EACzB,iBAAiB,EACjB,sBAAsB,EACtB,wBAAwB,EACxB,qBAAqB,EACrB,eAAe,GAChB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,sBAAsB,EAAE,MAAM,sBAAsB,CAAC;AAG9D,OAAO,EAAE,yBAAyB,EAAE,MAAM,6BAA6B,CAAC;AAExE,YAAY,EAAE,wBAAwB,EAAE,uBAAuB,EAAE,MAAM,qBAAqB,CAAC;AAC7F,OAAO,EACL,oBAAoB,EACpB,2BAA2B,EAC3B,2BAA2B,EAC3B,sBAAsB,EACtB,uBAAuB,EACvB,kBAAkB,EAClB,kBAAkB,EAClB,iBAAiB,GAClB,MAAM,qBAAqB,CAAC;AAC7B,YAAY,EAAE,kBAAkB,EAAE,eAAe,EAAE,MAAM,oBAAoB,CAAC;AAC9E,OAAO,EAAE,mBAAmB,EAAE,eAAe,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAC;AAC5F,YAAY,EAAE,qBAAqB,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAC;AACvF,OAAO,EAAE,oBAAoB,EAAE,MAAM,yBAAyB,CAAC;AAC/D,YAAY,EAAE,UAAU,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC;AACpE,OAAO,EACL,cAAc,EACd,oBAAoB,EACpB,wBAAwB,GACzB,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EAAE,kBAAkB,EAAE,MAAM,iBAAiB,CAAC;AAErD,YAAY,EAAE,oBAAoB,EAAE,yBAAyB,EAAE,MAAM,uBAAuB,CAAC;AAC7F,OAAO,EACL,mBAAmB,EACnB,kCAAkC,EAClC,oBAAoB,GACrB,MAAM,uBAAuB,CAAC;AAC/B,YAAY,EAAE,YAAY,EAAE,WAAW,EAAE,MAAM,uBAAuB,CAAC;AACvE,OAAO,EACL,iCAAiC,EACjC,oBAAoB,EACpB,mBAAmB,GACpB,MAAM,uBAAuB,CAAC"}

package/dist/doctor/index.js

@@ -30,6 +30,6 @@ export { buildRecommendation, isUnitDangerous, scanLegacyReaper } from './legacy
 export { scanMalformedTaskIds } from './malformed-task-ids.js';
 export { loadPragmaSsot, normalisePragmaValue, PRAGMA_VALUE_NORMALISERS, } from './pragma-ssot.js';
 export { auditSagaHierarchy } from './saga-audit.js';
-export { LIVE_STORE_FILENAME, scanSupersededStores } from './superseded-store.js';
+export { LIVE_STORE_FILENAME, SUPERSEDED_STORE_RECONCILE_COMMAND, scanSupersededStores, } from './superseded-store.js';
 export { auditWorktreeOrphansComprehensive, pruneWorktreeOrphans, scanWorktreeOrphans, } from './worktree-orphans.js';
 //# sourceMappingURL=index.js.map

package/dist/doctor/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/doctor/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;GAkBG;AAEH,kFAAkF;AAClF,kFAAkF;AAClF,kEAAkE;AAClE,OAAO,EACL,gBAAgB,EAChB,gBAAgB,EAChB,gBAAgB,EAChB,gBAAgB,EAChB,gBAAgB,EAChB,yBAAyB,EACzB,2BAA2B,EAC3B,8BAA8B,EAC9B,aAAa,EACb,wBAAwB,EACxB,yBAAyB,EACzB,iBAAiB,EACjB,sBAAsB,EACtB,wBAAwB,EACxB,qBAAqB,EACrB,eAAe,GAChB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,sBAAsB,EAAE,MAAM,sBAAsB,CAAC;AAC9D,+EAA+E;AAC/E,8CAA8C;AAC9C,OAAO,EAAE,yBAAyB,EAAE,MAAM,6BAA6B,CAAC;AAGxE,OAAO,EACL,oBAAoB,EACpB,2BAA2B,EAC3B,2BAA2B,EAC3B,sBAAsB,EACtB,uBAAuB,EACvB,kBAAkB,EAClB,kBAAkB,EAClB,iBAAiB,GAClB,MAAM,qBAAqB,CAAC;AAE7B,OAAO,EAAE,mBAAmB,EAAE,eAAe,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAC;AAE5F,OAAO,EAAE,oBAAoB,EAAE,MAAM,yBAAyB,CAAC;AAE/D,OAAO,EACL,cAAc,EACd,oBAAoB,EACpB,wBAAwB,GACzB,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EAAE,kBAAkB,EAAE,MAAM,iBAAiB,CAAC;AAGrD,OAAO,EAAE,mBAAmB,EAAE,oBAAoB,EAAE,MAAM,uBAAuB,CAAC;AAElF,OAAO,EACL,iCAAiC,EACjC,oBAAoB,EACpB,mBAAmB,GACpB,MAAM,uBAAuB,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/doctor/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;GAkBG;AAEH,kFAAkF;AAClF,kFAAkF;AAClF,kEAAkE;AAClE,OAAO,EACL,gBAAgB,EAChB,gBAAgB,EAChB,gBAAgB,EAChB,gBAAgB,EAChB,gBAAgB,EAChB,yBAAyB,EACzB,2BAA2B,EAC3B,8BAA8B,EAC9B,aAAa,EACb,wBAAwB,EACxB,yBAAyB,EACzB,iBAAiB,EACjB,sBAAsB,EACtB,wBAAwB,EACxB,qBAAqB,EACrB,eAAe,GAChB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,sBAAsB,EAAE,MAAM,sBAAsB,CAAC;AAC9D,+EAA+E;AAC/E,8CAA8C;AAC9C,OAAO,EAAE,yBAAyB,EAAE,MAAM,6BAA6B,CAAC;AAGxE,OAAO,EACL,oBAAoB,EACpB,2BAA2B,EAC3B,2BAA2B,EAC3B,sBAAsB,EACtB,uBAAuB,EACvB,kBAAkB,EAClB,kBAAkB,EAClB,iBAAiB,GAClB,MAAM,qBAAqB,CAAC;AAE7B,OAAO,EAAE,mBAAmB,EAAE,eAAe,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAC;AAE5F,OAAO,EAAE,oBAAoB,EAAE,MAAM,yBAAyB,CAAC;AAE/D,OAAO,EACL,cAAc,EACd,oBAAoB,EACpB,wBAAwB,GACzB,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EAAE,kBAAkB,EAAE,MAAM,iBAAiB,CAAC;AAGrD,OAAO,EACL,mBAAmB,EACnB,kCAAkC,EAClC,oBAAoB,GACrB,MAAM,uBAAuB,CAAC;AAE/B,OAAO,EACL,iCAAiC,EACjC,oBAAoB,EACpB,mBAAmB,GACpB,MAAM,uBAAuB,CAAC"}

package/dist/doctor/nexus-schema-residency.d.ts

@@ -57,7 +57,7 @@
  * Each MUST exist in exactly one of the two schemas. Sourced from
  * `schema/cleo-global/nexus.ts`, which is their only declaration.
  */
-export declare const NEXUS_FALLTHROUGH_TABLES: readonly ["nexus_audit_log", "nexus_project_id_aliases", "nexus_project_registry", "nexus_sigils", "nexus_user_profile"];
+export declare const NEXUS_FALLTHROUGH_TABLES: readonly ["nexus_audit_log", "nexus_project_id_aliases", "nexus_project_paths", "nexus_project_registry", "nexus_sigils", "nexus_user_profile"];
 /**
  * Code-graph tables that moved to the project scope under ADR-090 / T11538.
  *

package/dist/doctor/nexus-schema-residency.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"nexus-schema-residency.d.ts","sourceRoot":"","sources":["../../src/doctor/nexus-schema-residency.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAoDG;AAMH;;;;;GAKG;AACH,eAAO,MAAM,wBAAwB,0HAM3B,CAAC;AAEX;;;;;GAKG;AACH,eAAO,MAAM,0BAA0B,oFAK7B,CAAC;AAEX,yDAAyD;AACzD,MAAM,WAAW,qBAAqB;IACpC,sBAAsB;IACtB,QAAQ,CAAC,KAAK,EAAE,MAAM,CAAC;IACvB,yCAAyC;IACzC,QAAQ,CAAC,IAAI,EAAE,oBAAoB,GAAG,uBAAuB,CAAC;IAC9D,kCAAkC;IAClC,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB;;;;;;OAMG;IACH,QAAQ,CAAC,UAAU,EAAE,OAAO,CAAC;CAC9B;AAED,uCAAuC;AACvC,MAAM,WAAW,wBAAwB;IACvC,0CAA0C;IAC1C,QAAQ,CAAC,gBAAgB,EAAE,MAAM,CAAC;IAClC,yCAAyC;IACzC,QAAQ,CAAC,eAAe,EAAE,MAAM,CAAC;IACjC,qEAAqE;IACrE,QAAQ,CAAC,eAAe,EAAE,OAAO,CAAC;IAClC,gDAAgD;IAChD,QAAQ,CAAC,QAAQ,EAAE,SAAS,qBAAqB,EAAE,CAAC;IACpD,mDAAmD;IACnD,QAAQ,CAAC,eAAe,EAAE,MAAM,CAAC;IACjC;;;OAGG;IACH,QAAQ,CAAC,kBAAkB,EAAE,MAAM,CAAC;CACrC;AAuBD;;;;;;;;;;GAUG;AACH,wBAAgB,wBAAwB,CACtC,WAAW,EAAE,MAAM,EACnB,QAAQ,EAAE,MAAM,GACf,wBAAwB,CA+D1B"}
+{"version":3,"file":"nexus-schema-residency.d.ts","sourceRoot":"","sources":["../../src/doctor/nexus-schema-residency.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAoDG;AAMH;;;;;GAKG;AACH,eAAO,MAAM,wBAAwB,iJAO3B,CAAC;AAEX;;;;;GAKG;AACH,eAAO,MAAM,0BAA0B,oFAK7B,CAAC;AAEX,yDAAyD;AACzD,MAAM,WAAW,qBAAqB;IACpC,sBAAsB;IACtB,QAAQ,CAAC,KAAK,EAAE,MAAM,CAAC;IACvB,yCAAyC;IACzC,QAAQ,CAAC,IAAI,EAAE,oBAAoB,GAAG,uBAAuB,CAAC;IAC9D,kCAAkC;IAClC,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB;;;;;;OAMG;IACH,QAAQ,CAAC,UAAU,EAAE,OAAO,CAAC;CAC9B;AAED,uCAAuC;AACvC,MAAM,WAAW,wBAAwB;IACvC,0CAA0C;IAC1C,QAAQ,CAAC,gBAAgB,EAAE,MAAM,CAAC;IAClC,yCAAyC;IACzC,QAAQ,CAAC,eAAe,EAAE,MAAM,CAAC;IACjC,qEAAqE;IACrE,QAAQ,CAAC,eAAe,EAAE,OAAO,CAAC;IAClC,gDAAgD;IAChD,QAAQ,CAAC,QAAQ,EAAE,SAAS,qBAAqB,EAAE,CAAC;IACpD,mDAAmD;IACnD,QAAQ,CAAC,eAAe,EAAE,MAAM,CAAC;IACjC;;;OAGG;IACH,QAAQ,CAAC,kBAAkB,EAAE,MAAM,CAAC;CACrC;AAuBD;;;;;;;;;;GAUG;AACH,wBAAgB,wBAAwB,CACtC,WAAW,EAAE,MAAM,EACnB,QAAQ,EAAE,MAAM,GACf,wBAAwB,CA+D1B"}

package/dist/doctor/nexus-schema-residency.js

@@ -63,6 +63,7 @@ import { openCleoDbSnapshot } from '../store/open-cleo-db.js';
 export const NEXUS_FALLTHROUGH_TABLES = [
     'nexus_audit_log',
     'nexus_project_id_aliases',
+    'nexus_project_paths',
     'nexus_project_registry',
     'nexus_sigils',
     'nexus_user_profile',

package/dist/doctor/nexus-schema-residency.js.map

@@ -1 +1 @@
-{"version":3,"file":"nexus-schema-residency.js","sourceRoot":"","sources":["../../src/doctor/nexus-schema-residency.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAoDG;AAEH,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACrC,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AACjC,OAAO,EAAE,kBAAkB,EAAE,MAAM,0BAA0B,CAAC;AAE9D;;;;;GAKG;AACH,MAAM,CAAC,MAAM,wBAAwB,GAAG;IACtC,iBAAiB;IACjB,0BAA0B;IAC1B,wBAAwB;IACxB,cAAc;IACd,oBAAoB;CACZ,CAAC;AAEX;;;;;GAKG;AACH,MAAM,CAAC,MAAM,0BAA0B,GAAG;IACxC,kBAAkB;IAClB,iBAAiB;IACjB,aAAa;IACb,iBAAiB;CACT,CAAC;AAuCX,4DAA4D;AAC5D,SAAS,WAAW,CAAC,EAA+C,EAAE,KAAa;IACjF,MAAM,GAAG,GAAG,EAAE;SACX,OAAO,CAAC,mEAAmE,CAAC;SAC5E,GAAG,CAAC,KAAK,CAAC,CAAC;IACd,OAAO,GAAG,KAAK,SAAS,CAAC;AAC3B,CAAC;AAED,0DAA0D;AAC1D,SAAS,SAAS,CAAC,EAA+C,EAAE,KAAa;IAC/E,IAAI,CAAC;QACH,MAAM,GAAG,GAAG,EAAE,CAAC,OAAO,CAAC,8BAA8B,KAAK,GAAG,CAAC,CAAC,GAAG,EAAE,CAAC;QACrE,MAAM,CAAC,GAAG,GAAG,EAAE,CAAC,GAAG,CAAC,CAAC;QACrB,IAAI,OAAO,CAAC,KAAK,QAAQ;YAAE,OAAO,CAAC,CAAC;QACpC,IAAI,OAAO,CAAC,KAAK,QAAQ;YAAE,OAAO,MAAM,CAAC,CAAC,CAAC,CAAC;QAC5C,OAAO,CAAC,CAAC;IACX,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,CAAC,CAAC;IACX,CAAC;AACH,CAAC;AAED;;;;;;;;;;GAUG;AACH,MAAM,UAAU,wBAAwB,CACtC,WAAmB,EACnB,QAAgB;IAEhB,MAAM,gBAAgB,GAAG,IAAI,CAAC,WAAW,EAAE,OAAO,EAAE,SAAS,CAAC,CAAC;IAC/D,MAAM,eAAe,GAAG,IAAI,CAAC,QAAQ,EAAE,SAAS,CAAC,CAAC;IAElD,IAAI,CAAC,UAAU,CAAC,gBAAgB,CAAC,IAAI,CAAC,UAAU,CAAC,eAAe,CAAC,EAAE,CAAC;QAClE,OAAO;YACL,gBAAgB;YAChB,eAAe;YACf,eAAe,EAAE,KAAK;YACtB,QAAQ,EAAE,EAAE;YACZ,eAAe,EAAE,CAAC;YAClB,kBAAkB,EAAE,CAAC;SACtB,CAAC;IACJ,CAAC;IAED,MAAM,OAAO,GAAG,kBAAkB,CAAC,gBAAgB,CAAC,CAAC;IACrD,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,kBAAkB,CAAC,eAAe,CAAC,CAAC;QACnD,IAAI,CAAC;YACH,MAAM,QAAQ,GAA4B,EAAE,CAAC;YAE7C,oDAAoD;YACpD,KAAK,MAAM,KAAK,IAAI,0BAA0B,EAAE,CAAC;gBAC/C,IAAI,CAAC,WAAW,CAAC,MAAM,CAAC,EAAE,EAAE,KAAK,CAAC;oBAAE,SAAS;gBAC7C,MAAM,IAAI,GAAG,SAAS,CAAC,MAAM,CAAC,EAAE,EAAE,KAAK,CAAC,CAAC;gBACzC,QAAQ,CAAC,IAAI,CAAC;oBACZ,KAAK;oBACL,IAAI,EAAE,oBAAoB;oBAC1B,IAAI;oBACJ,UAAU,EAAE,IAAI,KAAK,CAAC;iBACvB,CAAC,CAAC;YACL,CAAC;YAED,0EAA0E;YAC1E,uEAAuE;YACvE,2DAA2D;YAC3D,KAAK,MAAM,KAAK,IAAI,wBAAwB,EAAE,CAAC;gBAC7C,IAAI,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,EAAE,KAAK,CAAC;oBAAE,SAAS;gBAC9C,QAAQ,CAAC,IAAI,CAAC;oBACZ,KAAK;oBACL,IAAI,EAAE,uBAAuB;oBAC7B,IAAI,EAAE,SAAS,CAAC,OAAO,CAAC,EAAE,EAAE,KAAK,CAAC;oBAClC,mEAAmE;oBACnE,qEAAqE;oBACrE,8CAA8C;oBAC9C,UAAU,EAAE,KAAK;iBAClB,CAAC,CAAC;YACL,CAAC;YAED,OAAO;gBACL,gBAAgB;gBAChB,eAAe;gBACf,eAAe,EAAE,IAAI;gBACrB,QAAQ;gBACR,eAAe,EAAE,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC,MAAM;gBAC5D,kBAAkB,EAAE,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC,MAAM;aACjE,CAAC;QACJ,CAAC;gBAAS,CAAC;YACT,MAAM,CAAC,KAAK,EAAE,CAAC;QACjB,CAAC;IACH,CAAC;YAAS,CAAC;QACT,OAAO,CAAC,KAAK,EAAE,CAAC;IAClB,CAAC;AACH,CAAC"}
+{"version":3,"file":"nexus-schema-residency.js","sourceRoot":"","sources":["../../src/doctor/nexus-schema-residency.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAoDG;AAEH,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACrC,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AACjC,OAAO,EAAE,kBAAkB,EAAE,MAAM,0BAA0B,CAAC;AAE9D;;;;;GAKG;AACH,MAAM,CAAC,MAAM,wBAAwB,GAAG;IACtC,iBAAiB;IACjB,0BAA0B;IAC1B,qBAAqB;IACrB,wBAAwB;IACxB,cAAc;IACd,oBAAoB;CACZ,CAAC;AAEX;;;;;GAKG;AACH,MAAM,CAAC,MAAM,0BAA0B,GAAG;IACxC,kBAAkB;IAClB,iBAAiB;IACjB,aAAa;IACb,iBAAiB;CACT,CAAC;AAuCX,4DAA4D;AAC5D,SAAS,WAAW,CAAC,EAA+C,EAAE,KAAa;IACjF,MAAM,GAAG,GAAG,EAAE;SACX,OAAO,CAAC,mEAAmE,CAAC;SAC5E,GAAG,CAAC,KAAK,CAAC,CAAC;IACd,OAAO,GAAG,KAAK,SAAS,CAAC;AAC3B,CAAC;AAED,0DAA0D;AAC1D,SAAS,SAAS,CAAC,EAA+C,EAAE,KAAa;IAC/E,IAAI,CAAC;QACH,MAAM,GAAG,GAAG,EAAE,CAAC,OAAO,CAAC,8BAA8B,KAAK,GAAG,CAAC,CAAC,GAAG,EAAE,CAAC;QACrE,MAAM,CAAC,GAAG,GAAG,EAAE,CAAC,GAAG,CAAC,CAAC;QACrB,IAAI,OAAO,CAAC,KAAK,QAAQ;YAAE,OAAO,CAAC,CAAC;QACpC,IAAI,OAAO,CAAC,KAAK,QAAQ;YAAE,OAAO,MAAM,CAAC,CAAC,CAAC,CAAC;QAC5C,OAAO,CAAC,CAAC;IACX,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,CAAC,CAAC;IACX,CAAC;AACH,CAAC;AAED;;;;;;;;;;GAUG;AACH,MAAM,UAAU,wBAAwB,CACtC,WAAmB,EACnB,QAAgB;IAEhB,MAAM,gBAAgB,GAAG,IAAI,CAAC,WAAW,EAAE,OAAO,EAAE,SAAS,CAAC,CAAC;IAC/D,MAAM,eAAe,GAAG,IAAI,CAAC,QAAQ,EAAE,SAAS,CAAC,CAAC;IAElD,IAAI,CAAC,UAAU,CAAC,gBAAgB,CAAC,IAAI,CAAC,UAAU,CAAC,eAAe,CAAC,EAAE,CAAC;QAClE,OAAO;YACL,gBAAgB;YAChB,eAAe;YACf,eAAe,EAAE,KAAK;YACtB,QAAQ,EAAE,EAAE;YACZ,eAAe,EAAE,CAAC;YAClB,kBAAkB,EAAE,CAAC;SACtB,CAAC;IACJ,CAAC;IAED,MAAM,OAAO,GAAG,kBAAkB,CAAC,gBAAgB,CAAC,CAAC;IACrD,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,kBAAkB,CAAC,eAAe,CAAC,CAAC;QACnD,IAAI,CAAC;YACH,MAAM,QAAQ,GAA4B,EAAE,CAAC;YAE7C,oDAAoD;YACpD,KAAK,MAAM,KAAK,IAAI,0BAA0B,EAAE,CAAC;gBAC/C,IAAI,CAAC,WAAW,CAAC,MAAM,CAAC,EAAE,EAAE,KAAK,CAAC;oBAAE,SAAS;gBAC7C,MAAM,IAAI,GAAG,SAAS,CAAC,MAAM,CAAC,EAAE,EAAE,KAAK,CAAC,CAAC;gBACzC,QAAQ,CAAC,IAAI,CAAC;oBACZ,KAAK;oBACL,IAAI,EAAE,oBAAoB;oBAC1B,IAAI;oBACJ,UAAU,EAAE,IAAI,KAAK,CAAC;iBACvB,CAAC,CAAC;YACL,CAAC;YAED,0EAA0E;YAC1E,uEAAuE;YACvE,2DAA2D;YAC3D,KAAK,MAAM,KAAK,IAAI,wBAAwB,EAAE,CAAC;gBAC7C,IAAI,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,EAAE,KAAK,CAAC;oBAAE,SAAS;gBAC9C,QAAQ,CAAC,IAAI,CAAC;oBACZ,KAAK;oBACL,IAAI,EAAE,uBAAuB;oBAC7B,IAAI,EAAE,SAAS,CAAC,OAAO,CAAC,EAAE,EAAE,KAAK,CAAC;oBAClC,mEAAmE;oBACnE,qEAAqE;oBACrE,8CAA8C;oBAC9C,UAAU,EAAE,KAAK;iBAClB,CAAC,CAAC;YACL,CAAC;YAED,OAAO;gBACL,gBAAgB;gBAChB,eAAe;gBACf,eAAe,EAAE,IAAI;gBACrB,QAAQ;gBACR,eAAe,EAAE,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC,MAAM;gBAC5D,kBAAkB,EAAE,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC,MAAM;aACjE,CAAC;QACJ,CAAC;gBAAS,CAAC;YACT,MAAM,CAAC,KAAK,EAAE,CAAC;QACjB,CAAC;IACH,CAAC;YAAS,CAAC;QACT,OAAO,CAAC,KAAK,EAAE,CAAC;IAClB,CAAC;AACH,CAAC"}

package/dist/doctor/project-identity.d.ts

@@ -0,0 +1,124 @@
+/**
+ * Inspect and resolve the portable project identity (T12353 · ADR-094).
+ *
+ * `.cleo/project-id` is tracked and write-once. `project-info.json` holds the
+ * id that local state is keyed by, and it is not tracked. T12325 made
+ * `cleo init` report a disagreement between the two and keep the local id,
+ * but left the operator without a way to see or fix it. This module is that
+ * way:
+ *
+ * - {@link inspectProjectIdentity} is read-only. It classifies the pair, checks
+ *   whether git actually tracks the file, and returns the exact remedy command.
+ * - {@link resolveProjectIdentity} applies the remedy. For a conflict it
+ *   re-keys the LOCAL side to the tracked id. The registry row's primary key
+ *   and every alias pointing at the old id are updated in one registry
+ *   transaction, and the old id is itself recorded as an alias. Nothing is
+ *   deleted: rows elsewhere that still carry the old id (audit log, session
+ *   manifest, background jobs) keep resolving through the alias table.
+ *
+ * The tracked file is never modified here. It is write-once, and a malformed
+ * one is restored from version control, never regenerated.
+ *
+ * @task T12353
+ * @see ADR-094 — write-once portable project identity (amends ADR-013 §9)
+ */
+/**
+ * Classification of a project's identity pair.
+ *
+ * - `ok` — both files agree, and git tracks `.cleo/project-id`.
+ * - `uninitialized` — neither file exists.
+ * - `not-adopted` — only the tracked file exists (a fresh clone before `cleo init`).
+ * - `missing` — `project-info.json` has an id, but `.cleo/project-id` is absent.
+ * - `conflict` — both exist and disagree.
+ * - `invalid` — `.cleo/project-id` exists but cannot be parsed.
+ * - `info-invalid` — `project-info.json` exists but has no usable id.
+ * - `untracked` — the pair agrees, but git does not track the file yet.
+ * - `ignored` — the pair agrees, but a gitignore rule excludes the file.
+ */
+export type ProjectIdentityState = 'ok' | 'uninitialized' | 'not-adopted' | 'missing' | 'conflict' | 'invalid' | 'info-invalid' | 'untracked' | 'ignored';
+/** Read-only report produced by {@link inspectProjectIdentity}. */
+export interface ProjectIdentityInspection {
+    /** Absolute project root that was inspected. */
+    readonly projectRoot: string;
+    /** Classification of the pair. */
+    readonly state: ProjectIdentityState;
+    /** Id in `.cleo/project-id`, when valid. */
+    readonly trackedId: string | null;
+    /** Id in `project-info.json`, when present. */
+    readonly localId: string | null;
+    /** One-line explanation. */
+    readonly message: string;
+    /** Exact command(s) that fix it, or `null` when nothing needs fixing. */
+    readonly remedy: string | null;
+}
+/** One step {@link resolveProjectIdentity} took or would take. */
+export interface IdentityResolutionStep {
+    /** What the step does. */
+    readonly action: 'write-tracked-id' | 'rekey-registry-row' | 'repoint-aliases' | 'alias-old-id' | 'drop-inverted-alias' | 'rewrite-project-info';
+    /** Human-readable detail with the ids and counts involved. */
+    readonly detail: string;
+}
+/** Result of {@link resolveProjectIdentity}. */
+export interface IdentityResolution {
+    /** `true` when nothing was written. */
+    readonly dryRun: boolean;
+    /** State before resolving. */
+    readonly before: ProjectIdentityInspection;
+    /** Steps, in order. When `dryRun` is `true`, none of them were applied. */
+    readonly steps: readonly IdentityResolutionStep[];
+    /** Registry row count before and after; equal counts show no row was lost. */
+    readonly registryRows: {
+        readonly before: number;
+        readonly after: number;
+    };
+    /**
+     * Why no steps were planned. Set when the state needs no resolution, or
+     * when resolving is refused (the message then carries the remedy).
+     */
+    readonly refused: string | null;
+}
+/**
+ * Classify the identity pair of a project, read-only.
+ *
+ * @param projectRoot - Absolute project root.
+ * @returns The inspection with the exact remedy command.
+ *
+ * @example
+ * ```ts
+ * const report = inspectProjectIdentity('/repo');
+ * if (report.remedy) console.log(report.remedy);
+ * ```
+ */
+export declare function inspectProjectIdentity(projectRoot: string): ProjectIdentityInspection;
+/** Options for {@link resolveProjectIdentity}. */
+export interface ResolveProjectIdentityOptions {
+    /** Plan only; write nothing. */
+    dryRun?: boolean;
+    /** Global CLEO home whose registry is re-keyed (defaults to the current one). */
+    cleoHome?: string;
+}
+/**
+ * Resolve the identity state that {@link inspectProjectIdentity} reported.
+ *
+ * - `missing` writes `.cleo/project-id` from the local id (create-only).
+ * - `info-invalid` re-runs the scaffold decision (tracked id or registry re-link).
+ * - `conflict` re-keys local state to the tracked id. One registry transaction
+ *   renames the row's primary key, re-points aliases and records the old id as
+ *   an alias. Then `project-info.json` is rewritten, keeping the old id under
+ *   `previousProjectIds`.
+ *
+ * Every other state is refused with its remedy. The operation is idempotent:
+ * re-running after a partial apply completes the remaining steps.
+ *
+ * @param projectRoot - Absolute project root.
+ * @param options - `dryRun` and registry home.
+ * @returns The plan (dry run) or the applied steps, with registry row counts.
+ *
+ * @example
+ * ```ts
+ * const plan = await resolveProjectIdentity(root, { dryRun: true });
+ * if (!plan.refused) await resolveProjectIdentity(root);
+ * ```
+ */
+export declare function resolveProjectIdentity(projectRoot: string, options?: ResolveProjectIdentityOptions): Promise<IdentityResolution>;
+//# sourceMappingURL=project-identity.d.ts.map

package/dist/doctor/project-identity.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"project-identity.d.ts","sourceRoot":"","sources":["../../src/doctor/project-identity.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;GAuBG;AAgBH;;;;;;;;;;;;GAYG;AACH,MAAM,MAAM,oBAAoB,GAC5B,IAAI,GACJ,eAAe,GACf,aAAa,GACb,SAAS,GACT,UAAU,GACV,SAAS,GACT,cAAc,GACd,WAAW,GACX,SAAS,CAAC;AAEd,mEAAmE;AACnE,MAAM,WAAW,yBAAyB;IACxC,gDAAgD;IAChD,QAAQ,CAAC,WAAW,EAAE,MAAM,CAAC;IAC7B,kCAAkC;IAClC,QAAQ,CAAC,KAAK,EAAE,oBAAoB,CAAC;IACrC,4CAA4C;IAC5C,QAAQ,CAAC,SAAS,EAAE,MAAM,GAAG,IAAI,CAAC;IAClC,+CAA+C;IAC/C,QAAQ,CAAC,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;IAChC,4BAA4B;IAC5B,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;IACzB,yEAAyE;IACzE,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;CAChC;AAED,kEAAkE;AAClE,MAAM,WAAW,sBAAsB;IACrC,0BAA0B;IAC1B,QAAQ,CAAC,MAAM,EACX,kBAAkB,GAClB,oBAAoB,GACpB,iBAAiB,GACjB,cAAc,GACd,qBAAqB,GACrB,sBAAsB,CAAC;IAC3B,8DAA8D;IAC9D,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAC;CACzB;AAED,gDAAgD;AAChD,MAAM,WAAW,kBAAkB;IACjC,uCAAuC;IACvC,QAAQ,CAAC,MAAM,EAAE,OAAO,CAAC;IACzB,8BAA8B;IAC9B,QAAQ,CAAC,MAAM,EAAE,yBAAyB,CAAC;IAC3C,2EAA2E;IAC3E,QAAQ,CAAC,KAAK,EAAE,SAAS,sBAAsB,EAAE,CAAC;IAClD,8EAA8E;IAC9E,QAAQ,CAAC,YAAY,EAAE;QAAE,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAC;QAAC,QAAQ,CAAC,KAAK,EAAE,MAAM,CAAA;KAAE,CAAC;IAC3E;;;OAGG;IACH,QAAQ,CAAC,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;CACjC;AAkCD;;;;;;;;;;;GAWG;AACH,wBAAgB,sBAAsB,CAAC,WAAW,EAAE,MAAM,GAAG,yBAAyB,CAiFrF;AASD,kDAAkD;AAClD,MAAM,WAAW,6BAA6B;IAC5C,gCAAgC;IAChC,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,iFAAiF;IACjF,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB;AAED;;;;;;;;;;;;;;;;;;;;;;GAsBG;AACH,wBAAsB,sBAAsB,CAC1C,WAAW,EAAE,MAAM,EACnB,OAAO,GAAE,6BAAkC,GAC1C,OAAO,CAAC,kBAAkB,CAAC,CA4I7B"}

package/dist/doctor/project-identity.js

@@ -0,0 +1,307 @@
+/**
+ * Inspect and resolve the portable project identity (T12353 · ADR-094).
+ *
+ * `.cleo/project-id` is tracked and write-once. `project-info.json` holds the
+ * id that local state is keyed by, and it is not tracked. T12325 made
+ * `cleo init` report a disagreement between the two and keep the local id,
+ * but left the operator without a way to see or fix it. This module is that
+ * way:
+ *
+ * - {@link inspectProjectIdentity} is read-only. It classifies the pair, checks
+ *   whether git actually tracks the file, and returns the exact remedy command.
+ * - {@link resolveProjectIdentity} applies the remedy. For a conflict it
+ *   re-keys the LOCAL side to the tracked id. The registry row's primary key
+ *   and every alias pointing at the old id are updated in one registry
+ *   transaction, and the old id is itself recorded as an alias. Nothing is
+ *   deleted: rows elsewhere that still carry the old id (audit log, session
+ *   manifest, background jobs) keep resolving through the alias table.
+ *
+ * The tracked file is never modified here. It is write-once, and a malformed
+ * one is restored from version control, never regenerated.
+ *
+ * @task T12353
+ * @see ADR-094 — write-once portable project identity (amends ADR-013 §9)
+ */
+import { execFileSync } from 'node:child_process';
+import { existsSync, readFileSync, renameSync, writeFileSync } from 'node:fs';
+import { join } from 'node:path';
+import { getCleoHome, isValidPortableProjectId, PORTABLE_PROJECT_ID_FILE, readPortableProjectId, } from '@cleocode/paths';
+import { ensurePortableProjectId } from '../scaffold/project-identity.js';
+/** Command that reports identity state; the prefix of every remedy below. */
+const IDENTITY_COMMAND = 'cleo doctor project-identity';
+/** Read the id and the whole object from `project-info.json`; `undefined` when absent. */
+function readInfo(projectRoot) {
+    const path = join(projectRoot, '.cleo', 'project-info.json');
+    if (!existsSync(path))
+        return undefined;
+    try {
+        const data = JSON.parse(readFileSync(path, 'utf-8'));
+        const id = data['projectId'];
+        return { data, id: typeof id === 'string' && isValidPortableProjectId(id) ? id : null };
+    }
+    catch {
+        return 'unparseable';
+    }
+}
+/** Git's view of the tracked file: `null` when this is not a git work tree. */
+function gitFileState(projectRoot) {
+    const rel = `.cleo/${PORTABLE_PROJECT_ID_FILE}`;
+    const run = (args) => {
+        try {
+            execFileSync('git', args, { cwd: projectRoot, stdio: 'pipe' });
+            return true;
+        }
+        catch {
+            return false;
+        }
+    };
+    if (!run(['rev-parse', '--is-inside-work-tree']))
+        return null;
+    if (run(['ls-files', '--error-unmatch', rel]))
+        return 'tracked';
+    if (run(['check-ignore', '-q', rel]))
+        return 'ignored';
+    return 'untracked';
+}
+/**
+ * Classify the identity pair of a project, read-only.
+ *
+ * @param projectRoot - Absolute project root.
+ * @returns The inspection with the exact remedy command.
+ *
+ * @example
+ * ```ts
+ * const report = inspectProjectIdentity('/repo');
+ * if (report.remedy) console.log(report.remedy);
+ * ```
+ */
+export function inspectProjectIdentity(projectRoot) {
+    const tracked = readPortableProjectId(projectRoot);
+    const info = readInfo(projectRoot);
+    const trackedId = tracked.status === 'valid' ? tracked.projectId : null;
+    const localId = info && info !== 'unparseable' ? info.id : null;
+    const base = { projectRoot, trackedId, localId };
+    if (tracked.status === 'invalid') {
+        return {
+            ...base,
+            state: 'invalid',
+            message: `.cleo/project-id is unusable (${tracked.reason}). CLEO never regenerates it.`,
+            remedy: 'git checkout -- .cleo/project-id   (restore the committed id; inspect with `git log -p -- .cleo/project-id`)',
+        };
+    }
+    if (info === undefined) {
+        return trackedId
+            ? {
+                ...base,
+                state: 'not-adopted',
+                message: `.cleo/project-id declares ${trackedId}, but this checkout has not been initialized.`,
+                remedy: 'cleo init   (adopts the tracked id; it never mints a new one)',
+            }
+            : {
+                ...base,
+                state: 'uninitialized',
+                message: 'No project identity: neither .cleo/project-info.json nor .cleo/project-id exists.',
+                remedy: 'cleo init',
+            };
+    }
+    if (!localId) {
+        return {
+            ...base,
+            state: 'info-invalid',
+            message: '.cleo/project-info.json has no usable projectId.',
+            remedy: `${IDENTITY_COMMAND} --resolve   (takes the tracked id, or re-links from the registry)`,
+        };
+    }
+    if (!trackedId) {
+        return {
+            ...base,
+            state: 'missing',
+            message: `.cleo/project-id is missing. The local id is ${localId}.`,
+            remedy: `${IDENTITY_COMMAND} --resolve && git add .cleo/project-id && git commit -m "chore: track CLEO project id"`,
+        };
+    }
+    if (trackedId !== localId) {
+        return {
+            ...base,
+            state: 'conflict',
+            message: `Identity conflict: .cleo/project-id is ${trackedId}, but project-info.json is ${localId}. Two lineages; local state is still keyed by ${localId}.`,
+            remedy: `${IDENTITY_COMMAND} --resolve --dry-run   then   ${IDENTITY_COMMAND} --resolve   (re-keys local state to ${trackedId}; ${localId} stays resolvable as an alias)`,
+        };
+    }
+    const git = gitFileState(projectRoot);
+    if (git === 'ignored') {
+        return {
+            ...base,
+            state: 'ignored',
+            message: '.cleo/project-id is gitignored, so clones cannot inherit it. The .cleo/.gitignore predates ADR-094.',
+            remedy: 'cleo upgrade   (refreshes .cleo/.gitignore with `!project-id`), then git add .cleo/project-id',
+        };
+    }
+    if (git === 'untracked') {
+        return {
+            ...base,
+            state: 'untracked',
+            message: '.cleo/project-id is not committed yet, so clones cannot inherit it.',
+            remedy: 'git add .cleo/project-id && git commit -m "chore: track CLEO project id"',
+        };
+    }
+    return {
+        ...base,
+        state: 'ok',
+        message: `Project identity ${trackedId} is tracked and consistent.`,
+        remedy: null,
+    };
+}
+/** Write JSON atomically (tmp + rename) so a crash never leaves a half file. */
+function writeJsonAtomic(path, data) {
+    const tmp = `${path}.tmp-${process.pid}`;
+    writeFileSync(tmp, `${JSON.stringify(data, null, 2)}\n`);
+    renameSync(tmp, path);
+}
+/**
+ * Resolve the identity state that {@link inspectProjectIdentity} reported.
+ *
+ * - `missing` writes `.cleo/project-id` from the local id (create-only).
+ * - `info-invalid` re-runs the scaffold decision (tracked id or registry re-link).
+ * - `conflict` re-keys local state to the tracked id. One registry transaction
+ *   renames the row's primary key, re-points aliases and records the old id as
+ *   an alias. Then `project-info.json` is rewritten, keeping the old id under
+ *   `previousProjectIds`.
+ *
+ * Every other state is refused with its remedy. The operation is idempotent:
+ * re-running after a partial apply completes the remaining steps.
+ *
+ * @param projectRoot - Absolute project root.
+ * @param options - `dryRun` and registry home.
+ * @returns The plan (dry run) or the applied steps, with registry row counts.
+ *
+ * @example
+ * ```ts
+ * const plan = await resolveProjectIdentity(root, { dryRun: true });
+ * if (!plan.refused) await resolveProjectIdentity(root);
+ * ```
+ */
+export async function resolveProjectIdentity(projectRoot, options = {}) {
+    const dryRun = options.dryRun === true;
+    const before = inspectProjectIdentity(projectRoot);
+    const steps = [];
+    const result = (refused, rows = { before: 0, after: 0 }) => ({ dryRun, before, steps, registryRows: rows, refused });
+    if (before.state === 'missing' && before.localId) {
+        steps.push({
+            action: 'write-tracked-id',
+            detail: `create .cleo/project-id = ${before.localId}`,
+        });
+        if (!dryRun)
+            await ensurePortableProjectId(projectRoot, before.localId);
+        return result(null);
+    }
+    if (before.state === 'info-invalid') {
+        steps.push({
+            action: 'rewrite-project-info',
+            detail: 'regenerate the project-info.json id from .cleo/project-id or the registry',
+        });
+        if (!dryRun) {
+            const { ensureProjectInfo } = await import('../scaffold/ensure-config.js');
+            await ensureProjectInfo(projectRoot, { force: true });
+        }
+        return result(null);
+    }
+    if (before.state !== 'conflict' || !before.trackedId || !before.localId) {
+        return result(before.remedy ? `${before.message} Remedy: ${before.remedy}` : 'Nothing to resolve.');
+    }
+    const oldId = before.localId;
+    const newId = before.trackedId;
+    const { getNexusRegistryDb } = await import('../store/nexus-sqlite.js');
+    const { projectIdAliases, projectRegistry } = await import('../store/schema/nexus-schema.js');
+    const { eq } = await import('drizzle-orm');
+    const db = await getNexusRegistryDb(options.cleoHome ?? getCleoHome());
+    const countRows = () => db.select().from(projectRegistry).all().length;
+    const rowsBefore = countRows();
+    const oldRow = db
+        .select()
+        .from(projectRegistry)
+        .where(eq(projectRegistry.projectId, oldId))
+        .get();
+    const newRow = db
+        .select()
+        .from(projectRegistry)
+        .where(eq(projectRegistry.projectId, newId))
+        .get();
+    if (oldRow && newRow) {
+        return result(`Both ids are registered on this device: ${oldId} at ${oldRow.projectPath} and ${newId} at ${newRow.projectPath}. ` +
+            'One registry row cannot hold two paths. ' +
+            `Remedy: if ${newRow.projectPath} is gone or is a stale checkout, run \`cleo nexus unregister ${newId}\` and then re-run \`${IDENTITY_COMMAND} --resolve\`.`, { before: rowsBefore, after: rowsBefore });
+    }
+    const newIdAlias = db
+        .select()
+        .from(projectIdAliases)
+        .where(eq(projectIdAliases.legacyId, newId))
+        .get();
+    if (newIdAlias && newIdAlias.canonicalId !== oldId && newIdAlias.canonicalId !== newId) {
+        return result(`${newId} is already an alias of a third identity (${newIdAlias.canonicalId}). Refusing to re-key. ` +
+            `Remedy: inspect with \`cleo nexus show ${newIdAlias.canonicalId}\` before retrying.`, { before: rowsBefore, after: rowsBefore });
+    }
+    const repointed = db
+        .select()
+        .from(projectIdAliases)
+        .where(eq(projectIdAliases.canonicalId, oldId))
+        .all();
+    if (oldRow)
+        steps.push({
+            action: 'rekey-registry-row',
+            detail: `registry row ${oldId} -> ${newId} (path ${oldRow.projectPath} kept)`,
+        });
+    if (newIdAlias?.canonicalId === oldId)
+        steps.push({
+            action: 'drop-inverted-alias',
+            detail: `alias ${newId} -> ${oldId} (it would point the new id at the old one)`,
+        });
+    steps.push({
+        action: 'repoint-aliases',
+        detail: `${repointed.length} alias row(s) canonical ${oldId} -> ${newId}`,
+    });
+    steps.push({ action: 'alias-old-id', detail: `alias ${oldId} -> ${newId}` });
+    steps.push({
+        action: 'rewrite-project-info',
+        detail: `project-info.json projectId ${oldId} -> ${newId} (previousProjectIds keeps ${oldId})`,
+    });
+    if (dryRun)
+        return result(null, { before: rowsBefore, after: rowsBefore });
+    const now = new Date().toISOString();
+    db.transaction((tx) => {
+        if (oldRow)
+            tx.update(projectRegistry)
+                .set({ projectId: newId })
+                .where(eq(projectRegistry.projectId, oldId))
+                .run();
+        if (newIdAlias?.canonicalId === oldId)
+            tx.delete(projectIdAliases).where(eq(projectIdAliases.legacyId, newId)).run();
+        tx.update(projectIdAliases)
+            .set({ canonicalId: newId })
+            .where(eq(projectIdAliases.canonicalId, oldId))
+            .run();
+        const oldAlias = tx
+            .select()
+            .from(projectIdAliases)
+            .where(eq(projectIdAliases.legacyId, oldId))
+            .get();
+        if (!oldAlias)
+            tx.insert(projectIdAliases)
+                .values({ legacyId: oldId, canonicalId: newId, createdAt: now })
+                .run();
+    }, { behavior: 'immediate' });
+    const info = readInfo(projectRoot);
+    if (info && info !== 'unparseable') {
+        const previous = Array.isArray(info.data['previousProjectIds'])
+            ? info.data['previousProjectIds'].filter((id) => typeof id === 'string')
+            : [];
+        writeJsonAtomic(join(projectRoot, '.cleo', 'project-info.json'), {
+            ...info.data,
+            projectId: newId,
+            previousProjectIds: [...new Set([...previous, oldId])],
+            lastUpdated: now,
+        });
+    }
+    return result(null, { before: rowsBefore, after: countRows() });
+}
+//# sourceMappingURL=project-identity.js.map

package/dist/doctor/project-identity.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"project-identity.js","sourceRoot":"","sources":["../../src/doctor/project-identity.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;GAuBG;AAEH,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAClD,OAAO,EAAE,UAAU,EAAE,YAAY,EAAE,UAAU,EAAE,aAAa,EAAE,MAAM,SAAS,CAAC;AAC9E,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AACjC,OAAO,EACL,WAAW,EACX,wBAAwB,EACxB,wBAAwB,EACxB,qBAAqB,GACtB,MAAM,iBAAiB,CAAC;AACzB,OAAO,EAAE,uBAAuB,EAAE,MAAM,iCAAiC,CAAC;AAE1E,6EAA6E;AAC7E,MAAM,gBAAgB,GAAG,8BAA8B,CAAC;AAyExD,0FAA0F;AAC1F,SAAS,QAAQ,CACf,WAAmB;IAEnB,MAAM,IAAI,GAAG,IAAI,CAAC,WAAW,EAAE,OAAO,EAAE,mBAAmB,CAAC,CAAC;IAC7D,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC;QAAE,OAAO,SAAS,CAAC;IACxC,IAAI,CAAC;QACH,MAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC,CAA4B,CAAC;QAChF,MAAM,EAAE,GAAG,IAAI,CAAC,WAAW,CAAC,CAAC;QAC7B,OAAO,EAAE,IAAI,EAAE,EAAE,EAAE,OAAO,EAAE,KAAK,QAAQ,IAAI,wBAAwB,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;IAC1F,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,aAAa,CAAC;IACvB,CAAC;AACH,CAAC;AAED,+EAA+E;AAC/E,SAAS,YAAY,CAAC,WAAmB;IACvC,MAAM,GAAG,GAAG,SAAS,wBAAwB,EAAE,CAAC;IAChD,MAAM,GAAG,GAAG,CAAC,IAAc,EAAW,EAAE;QACtC,IAAI,CAAC;YACH,YAAY,CAAC,KAAK,EAAE,IAAI,EAAE,EAAE,GAAG,EAAE,WAAW,EAAE,KAAK,EAAE,MAAM,EAAE,CAAC,CAAC;YAC/D,OAAO,IAAI,CAAC;QACd,CAAC;QAAC,MAAM,CAAC;YACP,OAAO,KAAK,CAAC;QACf,CAAC;IACH,CAAC,CAAC;IACF,IAAI,CAAC,GAAG,CAAC,CAAC,WAAW,EAAE,uBAAuB,CAAC,CAAC;QAAE,OAAO,IAAI,CAAC;IAC9D,IAAI,GAAG,CAAC,CAAC,UAAU,EAAE,iBAAiB,EAAE,GAAG,CAAC,CAAC;QAAE,OAAO,SAAS,CAAC;IAChE,IAAI,GAAG,CAAC,CAAC,cAAc,EAAE,IAAI,EAAE,GAAG,CAAC,CAAC;QAAE,OAAO,SAAS,CAAC;IACvD,OAAO,WAAW,CAAC;AACrB,CAAC;AAED;;;;;;;;;;;GAWG;AACH,MAAM,UAAU,sBAAsB,CAAC,WAAmB;IACxD,MAAM,OAAO,GAAG,qBAAqB,CAAC,WAAW,CAAC,CAAC;IACnD,MAAM,IAAI,GAAG,QAAQ,CAAC,WAAW,CAAC,CAAC;IACnC,MAAM,SAAS,GAAG,OAAO,CAAC,MAAM,KAAK,OAAO,CAAC,CAAC,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC;IACxE,MAAM,OAAO,GAAG,IAAI,IAAI,IAAI,KAAK,aAAa,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC;IAChE,MAAM,IAAI,GAAG,EAAE,WAAW,EAAE,SAAS,EAAE,OAAO,EAAE,CAAC;IAEjD,IAAI,OAAO,CAAC,MAAM,KAAK,SAAS,EAAE,CAAC;QACjC,OAAO;YACL,GAAG,IAAI;YACP,KAAK,EAAE,SAAS;YAChB,OAAO,EAAE,iCAAiC,OAAO,CAAC,MAAM,+BAA+B;YACvF,MAAM,EACJ,8GAA8G;SACjH,CAAC;IACJ,CAAC;IACD,IAAI,IAAI,KAAK,SAAS,EAAE,CAAC;QACvB,OAAO,SAAS;YACd,CAAC,CAAC;gBACE,GAAG,IAAI;gBACP,KAAK,EAAE,aAAa;gBACpB,OAAO,EAAE,6BAA6B,SAAS,+CAA+C;gBAC9F,MAAM,EAAE,+DAA+D;aACxE;YACH,CAAC,CAAC;gBACE,GAAG,IAAI;gBACP,KAAK,EAAE,eAAe;gBACtB,OAAO,EACL,mFAAmF;gBACrF,MAAM,EAAE,WAAW;aACpB,CAAC;IACR,CAAC;IACD,IAAI,CAAC,OAAO,EAAE,CAAC;QACb,OAAO;YACL,GAAG,IAAI;YACP,KAAK,EAAE,cAAc;YACrB,OAAO,EAAE,kDAAkD;YAC3D,MAAM,EAAE,GAAG,gBAAgB,oEAAoE;SAChG,CAAC;IACJ,CAAC;IACD,IAAI,CAAC,SAAS,EAAE,CAAC;QACf,OAAO;YACL,GAAG,IAAI;YACP,KAAK,EAAE,SAAS;YAChB,OAAO,EAAE,gDAAgD,OAAO,GAAG;YACnE,MAAM,EAAE,GAAG,gBAAgB,wFAAwF;SACpH,CAAC;IACJ,CAAC;IACD,IAAI,SAAS,KAAK,OAAO,EAAE,CAAC;QAC1B,OAAO;YACL,GAAG,IAAI;YACP,KAAK,EAAE,UAAU;YACjB,OAAO,EAAE,0CAA0C,SAAS,8BAA8B,OAAO,iDAAiD,OAAO,GAAG;YAC5J,MAAM,EAAE,GAAG,gBAAgB,iCAAiC,gBAAgB,wCAAwC,SAAS,KAAK,OAAO,gCAAgC;SAC1K,CAAC;IACJ,CAAC;IACD,MAAM,GAAG,GAAG,YAAY,CAAC,WAAW,CAAC,CAAC;IACtC,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;QACtB,OAAO;YACL,GAAG,IAAI;YACP,KAAK,EAAE,SAAS;YAChB,OAAO,EACL,qGAAqG;YACvG,MAAM,EACJ,+FAA+F;SAClG,CAAC;IACJ,CAAC;IACD,IAAI,GAAG,KAAK,WAAW,EAAE,CAAC;QACxB,OAAO;YACL,GAAG,IAAI;YACP,KAAK,EAAE,WAAW;YAClB,OAAO,EAAE,qEAAqE;YAC9E,MAAM,EAAE,0EAA0E;SACnF,CAAC;IACJ,CAAC;IACD,OAAO;QACL,GAAG,IAAI;QACP,KAAK,EAAE,IAAI;QACX,OAAO,EAAE,oBAAoB,SAAS,6BAA6B;QACnE,MAAM,EAAE,IAAI;KACb,CAAC;AACJ,CAAC;AAED,gFAAgF;AAChF,SAAS,eAAe,CAAC,IAAY,EAAE,IAA6B;IAClE,MAAM,GAAG,GAAG,GAAG,IAAI,QAAQ,OAAO,CAAC,GAAG,EAAE,CAAC;IACzC,aAAa,CAAC,GAAG,EAAE,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,EAAE,IAAI,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC;IACzD,UAAU,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC;AACxB,CAAC;AAUD;;;;;;;;;;;;;;;;;;;;;;GAsBG;AACH,MAAM,CAAC,KAAK,UAAU,sBAAsB,CAC1C,WAAmB,EACnB,UAAyC,EAAE;IAE3C,MAAM,MAAM,GAAG,OAAO,CAAC,MAAM,KAAK,IAAI,CAAC;IACvC,MAAM,MAAM,GAAG,sBAAsB,CAAC,WAAW,CAAC,CAAC;IACnD,MAAM,KAAK,GAA6B,EAAE,CAAC;IAC3C,MAAM,MAAM,GAAG,CACb,OAAsB,EACtB,OAA0C,EAAE,MAAM,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,EAC7C,EAAE,CAAC,CAAC,EAAE,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,YAAY,EAAE,IAAI,EAAE,OAAO,EAAE,CAAC,CAAC;IAElF,IAAI,MAAM,CAAC,KAAK,KAAK,SAAS,IAAI,MAAM,CAAC,OAAO,EAAE,CAAC;QACjD,KAAK,CAAC,IAAI,CAAC;YACT,MAAM,EAAE,kBAAkB;YAC1B,MAAM,EAAE,6BAA6B,MAAM,CAAC,OAAO,EAAE;SACtD,CAAC,CAAC;QACH,IAAI,CAAC,MAAM;YAAE,MAAM,uBAAuB,CAAC,WAAW,EAAE,MAAM,CAAC,OAAO,CAAC,CAAC;QACxE,OAAO,MAAM,CAAC,IAAI,CAAC,CAAC;IACtB,CAAC;IACD,IAAI,MAAM,CAAC,KAAK,KAAK,cAAc,EAAE,CAAC;QACpC,KAAK,CAAC,IAAI,CAAC;YACT,MAAM,EAAE,sBAAsB;YAC9B,MAAM,EAAE,2EAA2E;SACpF,CAAC,CAAC;QACH,IAAI,CAAC,MAAM,EAAE,CAAC;YACZ,MAAM,EAAE,iBAAiB,EAAE,GAAG,MAAM,MAAM,CAAC,8BAA8B,CAAC,CAAC;YAC3E,MAAM,iBAAiB,CAAC,WAAW,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC,CAAC;QACxD,CAAC;QACD,OAAO,MAAM,CAAC,IAAI,CAAC,CAAC;IACtB,CAAC;IACD,IAAI,MAAM,CAAC,KAAK,KAAK,UAAU,IAAI,CAAC,MAAM,CAAC,SAAS,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC;QACxE,OAAO,MAAM,CACX,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,OAAO,YAAY,MAAM,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC,qBAAqB,CACrF,CAAC;IACJ,CAAC;IAED,MAAM,KAAK,GAAG,MAAM,CAAC,OAAO,CAAC;IAC7B,MAAM,KAAK,GAAG,MAAM,CAAC,SAAS,CAAC;IAC/B,MAAM,EAAE,kBAAkB,EAAE,GAAG,MAAM,MAAM,CAAC,0BAA0B,CAAC,CAAC;IACxE,MAAM,EAAE,gBAAgB,EAAE,eAAe,EAAE,GAAG,MAAM,MAAM,CAAC,iCAAiC,CAAC,CAAC;IAC9F,MAAM,EAAE,EAAE,EAAE,GAAG,MAAM,MAAM,CAAC,aAAa,CAAC,CAAC;IAC3C,MAAM,EAAE,GAAG,MAAM,kBAAkB,CAAC,OAAO,CAAC,QAAQ,IAAI,WAAW,EAAE,CAAC,CAAC;IACvE,MAAM,SAAS,GAAG,GAAW,EAAE,CAAC,EAAE,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,eAAe,CAAC,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC;IAC/E,MAAM,UAAU,GAAG,SAAS,EAAE,CAAC;IAE/B,MAAM,MAAM,GAAG,EAAE;SACd,MAAM,EAAE;SACR,IAAI,CAAC,eAAe,CAAC;SACrB,KAAK,CAAC,EAAE,CAAC,eAAe,CAAC,SAAS,EAAE,KAAK,CAAC,CAAC;SAC3C,GAAG,EAAE,CAAC;IACT,MAAM,MAAM,GAAG,EAAE;SACd,MAAM,EAAE;SACR,IAAI,CAAC,eAAe,CAAC;SACrB,KAAK,CAAC,EAAE,CAAC,eAAe,CAAC,SAAS,EAAE,KAAK,CAAC,CAAC;SAC3C,GAAG,EAAE,CAAC;IACT,IAAI,MAAM,IAAI,MAAM,EAAE,CAAC;QACrB,OAAO,MAAM,CACX,2CAA2C,KAAK,OAAO,MAAM,CAAC,WAAW,QAAQ,KAAK,OAAO,MAAM,CAAC,WAAW,IAAI;YACjH,0CAA0C;YAC1C,cAAc,MAAM,CAAC,WAAW,gEAAgE,KAAK,wBAAwB,gBAAgB,eAAe,EAC9J,EAAE,MAAM,EAAE,UAAU,EAAE,KAAK,EAAE,UAAU,EAAE,CAC1C,CAAC;IACJ,CAAC;IACD,MAAM,UAAU,GAAG,EAAE;SAClB,MAAM,EAAE;SACR,IAAI,CAAC,gBAAgB,CAAC;SACtB,KAAK,CAAC,EAAE,CAAC,gBAAgB,CAAC,QAAQ,EAAE,KAAK,CAAC,CAAC;SAC3C,GAAG,EAAE,CAAC;IACT,IAAI,UAAU,IAAI,UAAU,CAAC,WAAW,KAAK,KAAK,IAAI,UAAU,CAAC,WAAW,KAAK,KAAK,EAAE,CAAC;QACvF,OAAO,MAAM,CACX,GAAG,KAAK,6CAA6C,UAAU,CAAC,WAAW,yBAAyB;YAClG,0CAA0C,UAAU,CAAC,WAAW,qBAAqB,EACvF,EAAE,MAAM,EAAE,UAAU,EAAE,KAAK,EAAE,UAAU,EAAE,CAC1C,CAAC;IACJ,CAAC;IACD,MAAM,SAAS,GAAG,EAAE;SACjB,MAAM,EAAE;SACR,IAAI,CAAC,gBAAgB,CAAC;SACtB,KAAK,CAAC,EAAE,CAAC,gBAAgB,CAAC,WAAW,EAAE,KAAK,CAAC,CAAC;SAC9C,GAAG,EAAE,CAAC;IAET,IAAI,MAAM;QACR,KAAK,CAAC,IAAI,CAAC;YACT,MAAM,EAAE,oBAAoB;YAC5B,MAAM,EAAE,gBAAgB,KAAK,OAAO,KAAK,UAAU,MAAM,CAAC,WAAW,QAAQ;SAC9E,CAAC,CAAC;IACL,IAAI,UAAU,EAAE,WAAW,KAAK,KAAK;QACnC,KAAK,CAAC,IAAI,CAAC;YACT,MAAM,EAAE,qBAAqB;YAC7B,MAAM,EAAE,SAAS,KAAK,OAAO,KAAK,6CAA6C;SAChF,CAAC,CAAC;IACL,KAAK,CAAC,IAAI,CAAC;QACT,MAAM,EAAE,iBAAiB;QACzB,MAAM,EAAE,GAAG,SAAS,CAAC,MAAM,2BAA2B,KAAK,OAAO,KAAK,EAAE;KAC1E,CAAC,CAAC;IACH,KAAK,CAAC,IAAI,CAAC,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM,EAAE,SAAS,KAAK,OAAO,KAAK,EAAE,EAAE,CAAC,CAAC;IAC7E,KAAK,CAAC,IAAI,CAAC;QACT,MAAM,EAAE,sBAAsB;QAC9B,MAAM,EAAE,+BAA+B,KAAK,OAAO,KAAK,8BAA8B,KAAK,GAAG;KAC/F,CAAC,CAAC;IACH,IAAI,MAAM;QAAE,OAAO,MAAM,CAAC,IAAI,EAAE,EAAE,MAAM,EAAE,UAAU,EAAE,KAAK,EAAE,UAAU,EAAE,CAAC,CAAC;IAE3E,MAAM,GAAG,GAAG,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE,CAAC;IACrC,EAAE,CAAC,WAAW,CACZ,CAAC,EAAE,EAAE,EAAE;QACL,IAAI,MAAM;YACR,EAAE,CAAC,MAAM,CAAC,eAAe,CAAC;iBACvB,GAAG,CAAC,EAAE,SAAS,EAAE,KAAK,EAAE,CAAC;iBACzB,KAAK,CAAC,EAAE,CAAC,eAAe,CAAC,SAAS,EAAE,KAAK,CAAC,CAAC;iBAC3C,GAAG,EAAE,CAAC;QACX,IAAI,UAAU,EAAE,WAAW,KAAK,KAAK;YACnC,EAAE,CAAC,MAAM,CAAC,gBAAgB,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC,gBAAgB,CAAC,QAAQ,EAAE,KAAK,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC;QAChF,EAAE,CAAC,MAAM,CAAC,gBAAgB,CAAC;aACxB,GAAG,CAAC,EAAE,WAAW,EAAE,KAAK,EAAE,CAAC;aAC3B,KAAK,CAAC,EAAE,CAAC,gBAAgB,CAAC,WAAW,EAAE,KAAK,CAAC,CAAC;aAC9C,GAAG,EAAE,CAAC;QACT,MAAM,QAAQ,GAAG,EAAE;aAChB,MAAM,EAAE;aACR,IAAI,CAAC,gBAAgB,CAAC;aACtB,KAAK,CAAC,EAAE,CAAC,gBAAgB,CAAC,QAAQ,EAAE,KAAK,CAAC,CAAC;aAC3C,GAAG,EAAE,CAAC;QACT,IAAI,CAAC,QAAQ;YACX,EAAE,CAAC,MAAM,CAAC,gBAAgB,CAAC;iBACxB,MAAM,CAAC,EAAE,QAAQ,EAAE,KAAK,EAAE,WAAW,EAAE,KAAK,EAAE,SAAS,EAAE,GAAG,EAAE,CAAC;iBAC/D,GAAG,EAAE,CAAC;IACb,CAAC,EACD,EAAE,QAAQ,EAAE,WAAW,EAAE,CAC1B,CAAC;IAEF,MAAM,IAAI,GAAG,QAAQ,CAAC,WAAW,CAAC,CAAC;IACnC,IAAI,IAAI,IAAI,IAAI,KAAK,aAAa,EAAE,CAAC;QACnC,MAAM,QAAQ,GAAG,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,oBAAoB,CAAC,CAAC;YAC7D,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,oBAAoB,CAAC,CAAC,MAAM,CAAC,CAAC,EAAE,EAAgB,EAAE,CAAC,OAAO,EAAE,KAAK,QAAQ,CAAC;YACtF,CAAC,CAAC,EAAE,CAAC;QACP,eAAe,CAAC,IAAI,CAAC,WAAW,EAAE,OAAO,EAAE,mBAAmB,CAAC,EAAE;YAC/D,GAAG,IAAI,CAAC,IAAI;YACZ,SAAS,EAAE,KAAK;YAChB,kBAAkB,EAAE,CAAC,GAAG,IAAI,GAAG,CAAC,CAAC,GAAG,QAAQ,EAAE,KAAK,CAAC,CAAC,CAAC;YACtD,WAAW,EAAE,GAAG;SACjB,CAAC,CAAC;IACL,CAAC;IACD,OAAO,MAAM,CAAC,IAAI,EAAE,EAAE,MAAM,EAAE,UAAU,EAAE,KAAK,EAAE,SAAS,EAAE,EAAE,CAAC,CAAC;AAClE,CAAC"}

package/dist/doctor/superseded-store.d.ts

@@ -57,6 +57,12 @@ export interface SupersededStoreEntry {
     readonly rowsInSuperseded: number | null;
     /** Rows found in the LIVE store's prefixed table. */
     readonly rowsInLive: number | null;
+    /**
+     * Rows of the superseded table whose `id` is ABSENT from the live table —
+     * what `--reconcile` would still copy. `0` means every row is already in
+     * `cleo.db`; `null` means the comparison could not be made (T12319).
+     */
+    readonly missingInLive: number | null;
     /**
      * True when the live store demonstrably holds the data and this file does
      * not — i.e. it is safe to archive. False keeps the entry but withholds the
@@ -80,6 +86,8 @@ export interface SupersededStoreScanResult {
 }
 /** The dual-scope store filename (ADR-068). */
 export declare const LIVE_STORE_FILENAME = "cleo.db";
+/** The supported command that copies stranded rows into `cleo.db` (T12319). */
+export declare const SUPERSEDED_STORE_RECONCILE_COMMAND = "cleo doctor superseded-store --reconcile";
 /**
  * Scan a project for store files superseded by `cleo.db`.
  *

package/dist/doctor/superseded-store.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"superseded-store.d.ts","sourceRoot":"","sources":["../../src/doctor/superseded-store.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAoCG;AAMH;;;GAGG;AACH,MAAM,WAAW,oBAAoB;IACnC,4CAA4C;IAC5C,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,sCAAsC;IACtC,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,qBAAqB;IACrB,QAAQ,CAAC,SAAS,EAAE,MAAM,CAAC;IAC3B,wCAAwC;IACxC,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC;IAC5B;;;;;OAKG;IACH,QAAQ,CAAC,gBAAgB,EAAE,MAAM,GAAG,IAAI,CAAC;IACzC,qDAAqD;IACrD,QAAQ,CAAC,UAAU,EAAE,MAAM,GAAG,IAAI,CAAC;IACnC;;;;;OAKG;IACH,QAAQ,CAAC,aAAa,EAAE,OAAO,CAAC;IAChC,oEAAoE;IACpE,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAC;CACzB;AAED,8CAA8C;AAC9C,MAAM,WAAW,yBAAyB;IACxC,8CAA8C;IAC9C,QAAQ,CAAC,WAAW,EAAE,MAAM,CAAC;IAC7B,kDAAkD;IAClD,QAAQ,CAAC,aAAa,EAAE,MAAM,CAAC;IAC/B,yEAAyE;IACzE,QAAQ,CAAC,eAAe,EAAE,OAAO,CAAC;IAClC,qDAAqD;IACrD,QAAQ,CAAC,OAAO,EAAE,SAAS,oBAAoB,EAAE,CAAC;CACnD;AAgBD,+CAA+C;AAC/C,eAAO,MAAM,mBAAmB,YAAY,CAAC;AAiC7C;;;;;;;;;;;;;;;;;;GAkBG;AACH,wBAAgB,oBAAoB,CAAC,WAAW,EAAE,MAAM,GAAG,yBAAyB,CAuEnF"}
+{"version":3,"file":"superseded-store.d.ts","sourceRoot":"","sources":["../../src/doctor/superseded-store.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAoCG;AAMH;;;GAGG;AACH,MAAM,WAAW,oBAAoB;IACnC,4CAA4C;IAC5C,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,sCAAsC;IACtC,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,qBAAqB;IACrB,QAAQ,CAAC,SAAS,EAAE,MAAM,CAAC;IAC3B,wCAAwC;IACxC,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC;IAC5B;;;;;OAKG;IACH,QAAQ,CAAC,gBAAgB,EAAE,MAAM,GAAG,IAAI,CAAC;IACzC,qDAAqD;IACrD,QAAQ,CAAC,UAAU,EAAE,MAAM,GAAG,IAAI,CAAC;IACnC;;;;OAIG;IACH,QAAQ,CAAC,aAAa,EAAE,MAAM,GAAG,IAAI,CAAC;IACtC;;;;;OAKG;IACH,QAAQ,CAAC,aAAa,EAAE,OAAO,CAAC;IAChC,oEAAoE;IACpE,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAC;CACzB;AAED,8CAA8C;AAC9C,MAAM,WAAW,yBAAyB;IACxC,8CAA8C;IAC9C,QAAQ,CAAC,WAAW,EAAE,MAAM,CAAC;IAC7B,kDAAkD;IAClD,QAAQ,CAAC,aAAa,EAAE,MAAM,CAAC;IAC/B,yEAAyE;IACzE,QAAQ,CAAC,eAAe,EAAE,OAAO,CAAC;IAClC,qDAAqD;IACrD,QAAQ,CAAC,OAAO,EAAE,SAAS,oBAAoB,EAAE,CAAC;CACnD;AAgBD,+CAA+C;AAC/C,eAAO,MAAM,mBAAmB,YAAY,CAAC;AAqE7C,+EAA+E;AAC/E,eAAO,MAAM,kCAAkC,6CAA6C,CAAC;AAE7F;;;;;;;;;;;;;;;;;;GAkBG;AACH,wBAAgB,oBAAoB,CAAC,WAAW,EAAE,MAAM,GAAG,yBAAyB,CAmFnF"}